| Package | Description |
|---|---|
| net.imagej.omero | |
| net.imagej.omero.roi |
| Modifier and Type | Method and Description |
|---|---|
OMEROLocation |
OMEROFormat.Metadata.getCredentials() |
| Modifier and Type | Method and Description |
|---|---|
OMEROSession |
OMEROService.createSession(OMEROLocation location)
Creates an OMEROSession.
|
OMEROSession |
DefaultOMEROService.createSession(OMEROLocation location) |
ROITree |
OMEROService.downloadROI(OMEROLocation credentials,
long roiID)
|
ROITree |
DefaultOMEROService.downloadROI(OMEROLocation credentials,
long roiID) |
ROITree |
OMEROService.downloadROIs(OMEROLocation credentials,
long imageID)
Downloads the ROIs associated with the given
imageID from OMERO,
and returns them as a ROITree. |
ROITree |
DefaultOMEROService.downloadROIs(OMEROLocation credentials,
long imageID) |
Table<?,?> |
OMEROService.downloadTable(OMEROLocation credentials,
long tableID)
Downloads the table with the given ID from OMERO, storing the result into a
new ImageJ
Table. |
Table<?,?> |
DefaultOMEROService.downloadTable(OMEROLocation credentials,
long tableID) |
List<Table<?,?>> |
OMEROService.downloadTables(OMEROLocation credentials,
long imageID)
Downloads all tables associated with the given image ID in OMERO.
|
List<Table<?,?>> |
DefaultOMEROService.downloadTables(OMEROLocation credentials,
long imageID) |
OMEROSession |
OMEROService.session(OMEROLocation location)
Returns an
OMEROSession using the given OMEROLocation. |
OMEROSession |
DefaultOMEROService.session(OMEROLocation location) |
void |
OMEROFormat.Metadata.setCredentials(OMEROLocation credentials) |
Collection<ROIData> |
OMEROService.updateAndReturnROIs(OMEROLocation credentials,
TreeNode<?> ijROIs,
long imageID)
Converts the given
TreeNode to OMERO ROI(s), creating new Objects
on the server only for ROIs which didn't previously exist. |
Collection<ROIData> |
DefaultOMEROService.updateAndReturnROIs(OMEROLocation credentials,
TreeNode<?> ijROIs,
long imageID) |
long[] |
OMEROService.updateROIs(OMEROLocation credentials,
TreeNode<?> ijROIs,
long imageID)
Converts the given
TreeNode to OMERO ROIs(s). |
long[] |
DefaultOMEROService.updateROIs(OMEROLocation credentials,
TreeNode<?> ijROIs,
long imageID) |
Collection<ROIData> |
OMEROService.uploadAndReturnROIs(OMEROLocation credentials,
TreeNode<?> ijROIs,
long imageID)
Converts the given
TreeNode to OMERO ROI(s), and uploads them all
as new Objects to the server. |
Collection<ROIData> |
DefaultOMEROService.uploadAndReturnROIs(OMEROLocation credentials,
TreeNode<?> ijROIs,
long imageID) |
void |
OMEROService.uploadImage(OMEROLocation credentials,
Dataset image,
boolean uploadROIs,
TreeNode<?> rois,
boolean updateROIs,
boolean uploadTables,
List<Table<?,?>> tables,
String[] tableNames,
long omeroDatasetID)
Uploads the given image to OMERO, and optionally uploads the given ROIs and
tables.
|
void |
DefaultOMEROService.uploadImage(OMEROLocation credentials,
Dataset image,
boolean uploadROIs,
TreeNode<?> rois,
boolean updateROIs,
boolean uploadTables,
List<Table<?,?>> tables,
String[] tableNames,
long omeroDatasetID) |
void |
OMEROService.uploadImageAttachments(OMEROLocation credentials,
long imageID,
boolean uploadROIs,
boolean updateROIs,
boolean uploadTables,
TreeNode<?> rois,
List<Table<?,?>> tables,
String[] tableNames)
Uploads the attachments to the OMERO server, and attaches them to the image
associated with the given id.
|
void |
DefaultOMEROService.uploadImageAttachments(OMEROLocation credentials,
long imageID,
boolean uploadROIs,
boolean updateROIs,
boolean uploadTables,
TreeNode<?> rois,
List<Table<?,?>> tables,
String[] tableNames) |
long[] |
OMEROService.uploadROIs(OMEROLocation credentials,
TreeNode<?> ijROIs,
long imageID)
Converts the given
TreeNode to OMERO ROI(s), uploads them to the
OMEROServer, and attaches them to the image with the specified ID. |
long[] |
DefaultOMEROService.uploadROIs(OMEROLocation credentials,
TreeNode<?> ijROIs,
long imageID) |
long |
OMEROService.uploadTable(OMEROLocation credentials,
String name,
Table<?,?> imageJTable,
long imageID)
Uploads an ImageJ table to OMERO, returning the new table ID on the OMERO
server.
|
long |
DefaultOMEROService.uploadTable(OMEROLocation credentials,
String name,
Table<?,?> imageJTable,
long imageID) |
| Constructor and Description |
|---|
DefaultOMEROSession(OMEROLocation credentials,
client c,
OMEROService omeroService) |
DefaultOMEROSession(OMEROLocation credentials,
OMEROService omeroService) |
LazyTableList(long imageID,
OMEROLocation location,
OMEROService omero,
LogService log) |
| Constructor and Description |
|---|
LazyROITree(TreeNode<?> parent,
long imageID,
OMEROLocation location,
OMEROService omero,
LogService log) |
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