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A

a() - Method in class net.imagej.axis.Variable1Axis
 
A(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds
The partial sum A from C.
about() - Method in class net.imagej.app.ImageJApp
 
about() - Method in class net.imagej.legacy.LegacyImageJApp
 
AboutImageJ - Class in net.imagej.app
Displays information and credits about the ImageJ software.
AboutImageJ() - Constructor for class net.imagej.app.AboutImageJ
 
abs(double) - Method in class net.imagej.ops.math.MathNamespace
 
abs(float) - Method in class net.imagej.ops.math.MathNamespace
 
abs(int) - Method in class net.imagej.ops.math.MathNamespace
 
abs(long) - Method in class net.imagej.ops.math.MathNamespace
 
abs(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Abs() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Abs
 
abs() - Method in class net.imagej.types.PreciseFixedFloatType
 
AbsDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by applying the absolute value function to an input Dataset.
AbsDataValues() - Constructor for class net.imagej.plugins.commands.assign.AbsDataValues
 
Abstract3x3NeighbourhoodThinning - Class in net.imagej.ops.morphology.thin
This abstract class represents an rough framework for a Thinning algorithm operating on a 3x3 neighbourhood by providing some often needed functions.
Abstract3x3NeighbourhoodThinning() - Constructor for class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
 
Abstract3x3NeighbourhoodThinning(boolean) - Constructor for class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
Create a new abstract thinning strategy.
AbstractAnnotatedSpace<A extends Axis> - Class in net.imagej.space
Abstract base class for AnnotatedSpace implementations.
AbstractAnnotatedSpace(int) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
 
AbstractAnnotatedSpace(A...) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
 
AbstractAnnotatedSpace(List<A>) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
 
AbstractApplyThresholdImg<T> - Class in net.imagej.ops.threshold
Abstract superclass of ApplyThresholdIterable implementations that operate on Img objects.
AbstractApplyThresholdImg() - Constructor for class net.imagej.ops.threshold.AbstractApplyThresholdImg
 
AbstractApplyThresholdIterable<T,I extends Iterable<T>,O extends Iterable<BitType>> - Class in net.imagej.ops.threshold
Abstract superclass of ApplyThresholdIterable implementations.
AbstractApplyThresholdIterable() - Constructor for class net.imagej.ops.threshold.AbstractApplyThresholdIterable
 
AbstractAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale
Abstract base class for AutoscaleMethod plugins.
AbstractAutoscaleMethod() - Constructor for class net.imagej.autoscale.AbstractAutoscaleMethod
 
AbstractBinaryCommand - Class in net.imagej.plugins.commands.binary
Abstract super class for binarization commands like Create Mask and Make Binary.
AbstractBinaryCommand() - Constructor for class net.imagej.plugins.commands.binary.AbstractBinaryCommand
 
AbstractBinaryComputerOp<I1,I2,O> - Class in net.imagej.ops.special.computer
Abstract superclass for BinaryComputerOp implementations.
AbstractBinaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractBinaryComputerOp
 
AbstractBinaryFunctionOp<I1,I2,O> - Class in net.imagej.ops.special.function
Abstract superclass for BinaryFunctionOp implementations.
AbstractBinaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractBinaryFunctionOp
 
AbstractBinaryHybridC<I1,I2,O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCF and BinaryHybridCI1 implementations.
AbstractBinaryHybridC() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
 
AbstractBinaryHybridCF<I1,I2,O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCF implementations.
AbstractBinaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCF
 
AbstractBinaryHybridCFI<I,O extends I> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCFI implementations.
AbstractBinaryHybridCFI() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCFI
 
AbstractBinaryHybridCFI1<I1,I2,O extends I1> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCFI1 implementations.
AbstractBinaryHybridCFI1() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCFI1
 
AbstractBinaryHybridCI<I,O extends I> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCI implementations.
AbstractBinaryHybridCI() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCI
 
AbstractBinaryHybridCI1<I1,I2,O extends I1> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCI1 implementations.
AbstractBinaryHybridCI1() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCI1
 
AbstractBinaryInplace1Op<A,I> - Class in net.imagej.ops.special.inplace
Abstract superclass for BinaryInplace1OnlyOp implementations.
AbstractBinaryInplace1Op() - Constructor for class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op
 
AbstractBinaryInplaceOp<A> - Class in net.imagej.ops.special.inplace
Abstract superclass for BinaryInplaceOnlyOp implementations.
AbstractBinaryInplaceOp() - Constructor for class net.imagej.ops.special.inplace.AbstractBinaryInplaceOp
 
AbstractBinaryOp<I1,I2,O> - Class in net.imagej.ops.special
Abstract base class for BinaryOp implementations.
AbstractBinaryOp() - Constructor for class net.imagej.ops.special.AbstractBinaryOp
 
AbstractBoundarySizeConvexHull<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.BoundarySizeConvexHull.
AbstractBoundarySizeConvexHull(Class<I>) - Constructor for class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
 
AbstractBoxivity<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.Boxivity.
AbstractBoxivity(Class<I>) - Constructor for class net.imagej.ops.geom.AbstractBoxivity
 
AbstractCalibratedAxis - Class in net.imagej.axis
Abstract base class for CalibratedAxis.
AbstractCalibratedAxis(AxisType) - Constructor for class net.imagej.axis.AbstractCalibratedAxis
 
AbstractCalibratedAxis(AxisType, String) - Constructor for class net.imagej.axis.AbstractCalibratedAxis
 
AbstractCalibratedRealInterval<A extends CalibratedAxis> - Class in net.imagej.interval
Abstract base class for CalibratedRealInterval.
AbstractCalibratedRealInterval(RealInterval) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(RealInterval, A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(RealInterval, List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[]) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], double[]) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], double[], A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], double[], List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedSpace<A extends CalibratedAxis> - Class in net.imagej.space
Abstract base class for CalibratedSpace.
AbstractCalibratedSpace(int) - Constructor for class net.imagej.space.AbstractCalibratedSpace
 
AbstractCalibratedSpace(A...) - Constructor for class net.imagej.space.AbstractCalibratedSpace
 
AbstractCalibratedSpace(List<A>) - Constructor for class net.imagej.space.AbstractCalibratedSpace
 
AbstractCenterAwareComputerOp<I,O> - Class in net.imagej.ops.map.neighborhood
Abstract superclass for CenterAwareComputerOp implementations.
AbstractCenterAwareComputerOp() - Constructor for class net.imagej.ops.map.neighborhood.AbstractCenterAwareComputerOp
 
AbstractCenterAwareNeighborhoodBasedFilter<I,O> - Class in net.imagej.ops.filter
 
AbstractCenterAwareNeighborhoodBasedFilter() - Constructor for class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
 
AbstractChunker - Class in net.imagej.ops.thread.chunker
Abstract ChunkerOp.
AbstractChunker() - Constructor for class net.imagej.ops.thread.chunker.AbstractChunker
 
AbstractColorTool - Class in net.imagej.plugins.tools
Abstract superclass for the BgColorTool and FgColorTool classes.
AbstractColorTool() - Constructor for class net.imagej.plugins.tools.AbstractColorTool
 
AbstractComputeThresholdHistogram<T extends RealType<T>> - Class in net.imagej.ops.threshold
Abstract superclass of ComputeThresholdHistogram implementations.
AbstractComputeThresholdHistogram() - Constructor for class net.imagej.ops.threshold.AbstractComputeThresholdHistogram
 
AbstractConvexity<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.Convexity.
AbstractConvexity() - Constructor for class net.imagej.ops.geom.AbstractConvexity
 
AbstractData - Class in net.imagej
Base implementation of Data.
AbstractData(RealInterval) - Constructor for class net.imagej.AbstractData
Default constructor for use by serialization code.
AbstractData(Context, RealInterval) - Constructor for class net.imagej.AbstractData
TODO
AbstractDataView - Class in net.imagej.display
Abstract superclass for DataViews.
AbstractDataView() - Constructor for class net.imagej.display.AbstractDataView
 
AbstractFFTFilterC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter
Abstract class for FFT based filter computers
AbstractFFTFilterC() - Constructor for class net.imagej.ops.filter.AbstractFFTFilterC
 
AbstractHaralickFeature<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Abstract class for HaralickFeatures.
AbstractHaralickFeature() - Constructor for class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
AbstractHelp - Class in net.imagej.ops.help
Base class for help operations.
AbstractHelp() - Constructor for class net.imagej.ops.help.AbstractHelp
 
AbstractIdentity<T> - Class in net.imagej.ops.identity
Abstract superclass of IdentityOp implementations.
AbstractIdentity() - Constructor for class net.imagej.ops.identity.AbstractIdentity
 
AbstractIJRoiToMaskPredicate<R extends Roi,M extends MaskPredicate<? extends RealLocalizable>,C extends AbstractRoiToMaskPredicateConverter<R,M>> - Class in net.imagej.omero.legacy.convert
Abstract base class for Converters which convert Roi to MaskPredicate and updates the OMEROService roi mappings.
AbstractIJRoiToMaskPredicate() - Constructor for class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
AbstractIJRoiWrapperToShapeData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.AbstractIJRoiWrapperToShapeData
 
AbstractImageDisplayViewer - Class in net.imagej.ui.viewer.image
The AbstractImageDisplayViewer implements the UI-independent elements of an image display viewer.
AbstractImageDisplayViewer() - Constructor for class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
AbstractImageDisplayViewer.ZoomScaleOption - Enum in net.imagej.ui.viewer.image
 
AbstractImageMomentOp<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments
Abstract ImageMomentOp.
AbstractImageMomentOp() - Constructor for class net.imagej.ops.imagemoments.AbstractImageMomentOp
 
AbstractIntegralImg<I extends RealType<I>> - Class in net.imagej.ops.image.integral
Abstract base class for n-dimensional integral images.
AbstractIntegralImg() - Constructor for class net.imagej.ops.image.integral.AbstractIntegralImg
 
AbstractIterativeFFTFilterC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter
Abstract class for iterative FFT filters that perform on RAI.
AbstractIterativeFFTFilterC() - Constructor for class net.imagej.ops.filter.AbstractIterativeFFTFilterC
 
AbstractJHotDrawAdapter<O extends Overlay,F extends Figure> - Class in net.imagej.ui.swing.overlay
An abstract class that gives default behavior for the JHotDrawAdapter interface.
AbstractJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
AbstractLBP2DFeature<I extends RealType<I>> - Class in net.imagej.ops.features.lbp2d
Abstract class for 2d local binary pattern feature
AbstractLBP2DFeature() - Constructor for class net.imagej.ops.features.lbp2d.AbstractLBP2DFeature
 
AbstractLegacyAdapter - Class in net.imagej.legacy.ui
Abstract LegacyAdapter implementation.
AbstractLegacyAdapter(LegacyService) - Constructor for class net.imagej.legacy.ui.AbstractLegacyAdapter
 
AbstractLegacyConverter<I,O> - Class in net.imagej.legacy.convert
Base Converter class for converting ImageJ 1.x data structures.
AbstractLegacyConverter() - Constructor for class net.imagej.legacy.convert.AbstractLegacyConverter
 
AbstractLinearSpace<A extends LinearAxis> - Class in net.imagej.space
Abstract base class for LinearSpace.
AbstractLinearSpace(int) - Constructor for class net.imagej.space.AbstractLinearSpace
 
AbstractLinearSpace(A...) - Constructor for class net.imagej.space.AbstractLinearSpace
 
AbstractLinearSpace(List<A>) - Constructor for class net.imagej.space.AbstractLinearSpace
 
AbstractLineTool - Class in net.imagej.plugins.tools
Abstract class that is used by PencilTool, PaintBrushTool, and their erase modes to draw lines into a dataset using fg/bg values.
AbstractLineTool() - Constructor for class net.imagej.plugins.tools.AbstractLineTool
 
AbstractMapBinaryComputer<EI1,EI2,EO,PI1,PI2,PO> - Class in net.imagej.ops.map
Abstract base class for MapBinaryComputer implementations.
AbstractMapBinaryComputer() - Constructor for class net.imagej.ops.map.AbstractMapBinaryComputer
 
AbstractMapBinaryInplace<EI,EO extends EI,PA> - Class in net.imagej.ops.map
Abstract base class for MapBinaryInplace implementations.
AbstractMapBinaryInplace() - Constructor for class net.imagej.ops.map.AbstractMapBinaryInplace
 
AbstractMapBinaryInplace1<EI1,EI2,EO extends EI1,PA,PI> - Class in net.imagej.ops.map
Abstract base class for MapBinaryInplace1 implementations.
AbstractMapBinaryInplace1() - Constructor for class net.imagej.ops.map.AbstractMapBinaryInplace1
 
AbstractMapComputer<EI,EO,PI,PO> - Class in net.imagej.ops.map
Abstract base class for MapUnaryComputer implementations.
AbstractMapComputer() - Constructor for class net.imagej.ops.map.AbstractMapComputer
 
AbstractMapInplace<EI,EO extends EI,PA> - Class in net.imagej.ops.map
Abstract base class for MapInplace implementations.
AbstractMapInplace() - Constructor for class net.imagej.ops.map.AbstractMapInplace
 
AbstractMapIterableInplace<EI,EO extends EI,PA extends Iterable<EI>> - Class in net.imagej.ops.map
Abstract base class for MapInplace implementations that operate on Iterables.
AbstractMapIterableInplace() - Constructor for class net.imagej.ops.map.AbstractMapIterableInplace
 
AbstractMapNeighborhood<EI,EO,PI,PO,OP extends Op> - Class in net.imagej.ops.map.neighborhood
Abstract base class for MapNeighborhood implementations.
AbstractMapNeighborhood() - Constructor for class net.imagej.ops.map.neighborhood.AbstractMapNeighborhood
 
AbstractMapNullaryComputer<EO,PO> - Class in net.imagej.ops.map
Abstract base class for MapNullaryComputer implementations.
AbstractMapNullaryComputer() - Constructor for class net.imagej.ops.map.AbstractMapNullaryComputer
 
AbstractMapView<EI,EO,PI,PO> - Class in net.imagej.ops.map
Abstract base class for MapView implementations.
AbstractMapView() - Constructor for class net.imagej.ops.map.AbstractMapView
 
AbstractMaskPredicateToRoiConverter<M extends MaskPredicate<?>,R extends Roi> - Class in net.imagej.legacy.convert.roi
Abstract base class for converting MaskPredicates to Rois.
AbstractMaskPredicateToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
 
AbstractMaskPredicateToShapeData<L,M extends MaskPredicate<L>,S extends ShapeData> - Class in net.imagej.omero.roi
Abstract base class for converting MaskPredicate to OMERO ShapeData.
AbstractMaskPredicateToShapeData() - Constructor for class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
 
AbstractMaskPredicateUnwrapConverter<M extends MaskPredicate<?>> - Class in net.imagej.legacy.convert.roi
Abstract base class for converters which unwrap wrapped MaskPredicates.
AbstractMaskPredicateUnwrapConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
 
AbstractMaskToRAConverter<M extends Mask,R extends RandomAccessible<BoolType>> - Class in net.imagej.roi
Base class for converting Mask to RandomAccessible.
AbstractMaskToRAConverter() - Constructor for class net.imagej.roi.AbstractMaskToRAConverter
 
AbstractMinMaxMethod<T extends Type<T> & Comparable<T>> - Class in net.imagej.minmax
Abstract superclass for MinMaxMethod implementations.
AbstractMinMaxMethod() - Constructor for class net.imagej.minmax.AbstractMinMaxMethod
 
AbstractMorphOpsCommand - Class in net.imagej.plugins.commands.binary
Abstract super class for commands that modify binary images in place.
AbstractMorphOpsCommand() - Constructor for class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
 
AbstractNamespace - Class in net.imagej.ops
Abstract base class for Namespace implementations.
AbstractNamespace() - Constructor for class net.imagej.ops.AbstractNamespace
 
AbstractNeighborhoodBasedFilter<I,O> - Class in net.imagej.ops.filter
 
AbstractNeighborhoodBasedFilter() - Constructor for class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
 
AbstractNoiseReducerPlugin<U extends RealType<U>> - Class in net.imagej.plugins.commands.assign.noisereduce
Abstract super class for noise reduction plugin implementations.
AbstractNoiseReducerPlugin() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
AbstractNoiseReducerPlugin.NeighborhoodType - Enum in net.imagej.plugins.commands.assign.noisereduce
 
AbstractNullaryComputerOp<O> - Class in net.imagej.ops.special.computer
Abstract superclass for BinaryComputerOp implementations.
AbstractNullaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractNullaryComputerOp
 
AbstractNullaryFunctionOp<O> - Class in net.imagej.ops.special.function
Abstract superclass for NullaryFunctionOp implementations.
AbstractNullaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractNullaryFunctionOp
 
AbstractNullaryHybridCF<O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for NullaryHybridCF implementations.
AbstractNullaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractNullaryHybridCF
 
AbstractNullaryOp<O> - Class in net.imagej.ops.special
Abstract base class for NullaryOp implementations.
AbstractNullaryOp() - Constructor for class net.imagej.ops.special.AbstractNullaryOp
 
AbstractOMEROEllipse - Class in net.imagej.omero.roi.ellipse
Base class for OMEROEllipse.
AbstractOMEROEllipse(EllipseData, BoundaryType) - Constructor for class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse
 
AbstractOMEROPolygon - Class in net.imagej.omero.roi.polyshape
Base class for OMEROPolygon.
AbstractOMEROPolygon(PolygonData, BoundaryType) - Constructor for class net.imagej.omero.roi.polyshape.AbstractOMEROPolygon
 
AbstractOMERORealMaskRealInterval<S extends ShapeData> - Class in net.imagej.omero.roi
Abstract base class for OMERORealMaskRealInterval implementations.
AbstractOMERORealMaskRealInterval(S, BoundaryType) - Constructor for class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval
 
AbstractOMERORealMaskToIJRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi
 
AbstractOMERORealMaskUnwrapper<S extends ShapeData,O extends OMERORealMask<S>> - Class in net.imagej.omero.roi
Unwraps OMERORealMask objects.
AbstractOMERORealMaskUnwrapper() - Constructor for class net.imagej.omero.roi.AbstractOMERORealMaskUnwrapper
 
AbstractOMERORectangle - Class in net.imagej.omero.roi.rectangle
Base class for OMERORectangle.
AbstractOMERORectangle(RectangleData, BoundaryType) - Constructor for class net.imagej.omero.roi.rectangle.AbstractOMERORectangle
 
AbstractOp - Class in net.imagej.ops
Abstract superclass for Op implementations.
AbstractOp() - Constructor for class net.imagej.ops.AbstractOp
 
AbstractOverlay - Class in net.imagej.overlay
Abstract superclass of Overlay implementations.
AbstractOverlay(RealInterval) - Constructor for class net.imagej.overlay.AbstractOverlay
 
AbstractOverlay(Context, RealInterval) - Constructor for class net.imagej.overlay.AbstractOverlay
 
AbstractOverlayProperties - Class in net.imagej.plugins.commands.overlay
A plugin to change the properties (e.g., line color, line width) of a given set of overlays.
AbstractOverlayProperties() - Constructor for class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
AbstractPadAndFFTFilter<I extends RealType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.filter
Abstract class for binary filter that performs operations using an image and kernel in the frequency domain using the imglib2 FFTMethods library.
AbstractPadAndFFTFilter() - Constructor for class net.imagej.ops.filter.AbstractPadAndFFTFilter
 
AbstractPlanarCommand - Class in net.imagej.command
Abstract superclass for commands that can operate on a single plane.
AbstractPlanarCommand() - Constructor for class net.imagej.command.AbstractPlanarCommand
 
AbstractPolygonRoiWrapper - Class in net.imagej.legacy.convert.roi
Abstract base class for wrapping ImageJ 1.x objects which are PolygonRois (i.e.
AbstractPolygonRoiWrapper(int[], int[], int, int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D or Polyline.
AbstractPolygonRoiWrapper(float[], float[], int, int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D or Polyline.
AbstractPolygonRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Mask.
AbstractPolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Mask.
AbstractProgressable - Class in net.imagej.updater.util
Abstract superclass for Progressable implementations.
AbstractProgressable() - Constructor for class net.imagej.updater.util.AbstractProgressable
 
AbstractRAToMaskConverter<R extends RandomAccessible<BoolType>,M extends Mask> - Class in net.imagej.roi
Abstract base class for converting RandomAccessible to Mask.
AbstractRAToMaskConverter() - Constructor for class net.imagej.roi.AbstractRAToMaskConverter
 
AbstractRealMaskToRRAConverter<M extends RealMask,R extends RealRandomAccessible<BoolType>> - Class in net.imagej.roi
Base class for converting RealMask to RealRandomAccessible.
AbstractRealMaskToRRAConverter() - Constructor for class net.imagej.roi.AbstractRealMaskToRRAConverter
 
AbstractROIOverlay<R extends RegionOfInterest> - Class in net.imagej.overlay
An overlay that has an associated region of interest
AbstractROIOverlay(R) - Constructor for class net.imagej.overlay.AbstractROIOverlay
 
AbstractROIOverlay(Context, R) - Constructor for class net.imagej.overlay.AbstractROIOverlay
 
AbstractRoiToMaskPredicateConverter<R extends Roi,M extends MaskPredicate<? extends RealLocalizable>> - Class in net.imagej.legacy.convert.roi
Base class for all converters which convert Roi to MaskPredicate.
AbstractRoiToMaskPredicateConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
 
AbstractRoiUnwrapConverter<R extends Roi> - Class in net.imagej.legacy.convert.roi
Abstract base class for converters which unwrap wrapped ImageJ 1.x Rois.
AbstractRoiUnwrapConverter() - Constructor for class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
 
AbstractRRAToRealMaskConverter<R extends RealRandomAccessible<BoolType>,M extends RealMask> - Class in net.imagej.roi
Abstract base class for convert RealRandomAccessible to RealMask.
AbstractRRAToRealMaskConverter() - Constructor for class net.imagej.roi.AbstractRRAToRealMaskConverter
 
AbstractShadows - Class in net.imagej.plugins.commands.correlate
Abstract superclass for Shadows plugins.
AbstractShapeDataToRealMaskRealInterval<S extends ShapeData,M extends RealMaskRealInterval> - Class in net.imagej.omero.roi
Abstract base class for converting OMERO ShapeData to RealMask.
AbstractShapeDataToRealMaskRealInterval() - Constructor for class net.imagej.omero.roi.AbstractShapeDataToRealMaskRealInterval
 
AbstractSizeConvexHull<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.SizeConvexHull .
AbstractSizeConvexHull(Class<I>) - Constructor for class net.imagej.ops.geom.AbstractSizeConvexHull
 
AbstractSolidity<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.Solidity.
AbstractSolidity() - Constructor for class net.imagej.ops.geom.AbstractSolidity
 
AbstractStatsOp<I,O extends RealType<O>> - Class in net.imagej.ops.stats
Abstract Statistics Op.
AbstractStatsOp() - Constructor for class net.imagej.ops.stats.AbstractStatsOp
 
AbstractSwingImageDisplayViewer - Class in net.imagej.ui.swing.viewer.image
A Swing image display viewer, which displays 2D planes in grayscale or composite color.
AbstractSwingImageDisplayViewer() - Constructor for class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
AbstractTableToResultsTableConverter() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter
 
AbstractTamuraFeature<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d
Abstract tamura feature.
AbstractTamuraFeature() - Constructor for class net.imagej.ops.features.tamura2d.AbstractTamuraFeature
 
AbstractThin - Class in net.imagej.ops.morphology.thin
Thinning Operation
AbstractThin() - Constructor for class net.imagej.ops.morphology.thin.AbstractThin
 
AbstractTreeNodeToROIData<D extends TreeNode<?>> - Class in net.imagej.omero.roi
Abstract base layer for converting TreeNode to ROIData.
AbstractTreeNodeToROIData() - Constructor for class net.imagej.omero.roi.AbstractTreeNodeToROIData
 
AbstractTypedSpace<A extends TypedAxis> - Class in net.imagej.space
Abstract base class for TypedSpace.
AbstractTypedSpace(int) - Constructor for class net.imagej.space.AbstractTypedSpace
 
AbstractTypedSpace(A...) - Constructor for class net.imagej.space.AbstractTypedSpace
 
AbstractTypedSpace(List<A>) - Constructor for class net.imagej.space.AbstractTypedSpace
 
AbstractUnaryComputerOp<I,O> - Class in net.imagej.ops.special.computer
Abstract superclass for UnaryComputerOp implementations.
AbstractUnaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractUnaryComputerOp
 
AbstractUnaryFunctionOp<I,O> - Class in net.imagej.ops.special.function
Abstract superclass for UnaryFunctionOp implementations.
AbstractUnaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractUnaryFunctionOp
 
AbstractUnaryHybridC<I,O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for UnaryHybridCF and UnaryHybridCI implementations.
AbstractUnaryHybridC() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridC
 
AbstractUnaryHybridCF<I,O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for UnaryHybridCF implementations.
AbstractUnaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCF
 
AbstractUnaryHybridCFI<I,O extends I> - Class in net.imagej.ops.special.hybrid
Abstract superclass for UnaryHybridCFI implementations.
AbstractUnaryHybridCFI() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCFI
 
AbstractUnaryHybridCI<I,O extends I> - Class in net.imagej.ops.special.hybrid
Abstract superclass for UnaryHybridCI implementations.
AbstractUnaryHybridCI() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCI
 
AbstractUnaryInplaceOp<A> - Class in net.imagej.ops.special.inplace
Abstract superclass for UnaryInplaceOnlyOp implementations.
AbstractUnaryInplaceOp() - Constructor for class net.imagej.ops.special.inplace.AbstractUnaryInplaceOp
 
AbstractUnaryOp<I,O> - Class in net.imagej.ops.special
Abstract base class for UnaryOp implementations.
AbstractUnaryOp() - Constructor for class net.imagej.ops.special.AbstractUnaryOp
 
AbstractUploader - Class in net.imagej.updater
Abstract base class for ImageJ upload mechanisms.
AbstractUploader() - Constructor for class net.imagej.updater.AbstractUploader
 
AbstractVertexInterpolator - Class in net.imagej.ops.geom.geom3d.mesh
AbstractVertexInterpolator() - Constructor for class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
AbstractWrappedOMERORealMaskToMaskPredicate() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
 
AbstractZernikeFeature<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.features.zernike
Abstract Zernike Op.
AbstractZernikeFeature() - Constructor for class net.imagej.ops.features.zernike.AbstractZernikeFeature
 
accelerate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
accelerate(RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
AcceleratorHandler - Class in net.imagej.plugins.tools
Handles keyboard accelerator combinations that launch modules.
AcceleratorHandler() - Constructor for class net.imagej.plugins.tools.AcceleratorHandler
 
access - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
accessTextFields() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
accessTextFields() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
ACTION_ATTRIBUTE - Static variable in class net.imagej.ui.swing.updater.DiffView
 
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
 
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.updater.ReviewSiteURLsDialog
 
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
actionResolution(String, FileObject, FileObject.Action...) - Method in class net.imagej.updater.Conflicts
 
actionResolution(String, Iterable<FileObject>, FileObject.Action...) - Method in class net.imagej.updater.Conflicts
 
actionSpecified() - Method in class net.imagej.updater.FileObject
 
activate() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
 
activate(DrawingEditor) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
activateUpdateSite(UpdateSite) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
activateUpdateSite(UpdateSite, Progress) - Method in class net.imagej.updater.FilesCollection
Activate the given update site.
ActiveChannelCollectionPreprocessor - Class in net.imagej.display.process
Assigns the active ChannelCollection when there is one single unresolved ChannelCollection parameter.
ActiveChannelCollectionPreprocessor() - Constructor for class net.imagej.display.process.ActiveChannelCollectionPreprocessor
 
ActiveDatasetPreprocessor - Class in net.imagej.display.process
Fills single, unresolved module inputs with the active active Dataset.
ActiveDatasetPreprocessor() - Constructor for class net.imagej.display.process.ActiveDatasetPreprocessor
 
ActiveDatasetViewPreprocessor - Class in net.imagej.display.process
Assigns the active DatasetView when there is one single unresolved DatasetView parameter.
ActiveDatasetViewPreprocessor() - Constructor for class net.imagej.display.process.ActiveDatasetViewPreprocessor
 
ActiveDataViewPreprocessor - Class in net.imagej.display.process
Assigns the active DataView when there is one single unresolved DataView parameter.
ActiveDataViewPreprocessor() - Constructor for class net.imagej.display.process.ActiveDataViewPreprocessor
 
ActiveImageDisplayPreprocessor - Class in net.imagej.display.process
Assigns the active ImageDisplay when there is one single unresolved ImageDisplay parameter.
ActiveImageDisplayPreprocessor() - Constructor for class net.imagej.display.process.ActiveImageDisplayPreprocessor
 
ActiveImagePlusPreprocessor - Class in net.imagej.legacy.plugin
TODO: this class can be removed once Dataset and ImagePlus conversion is done properly via wrapping.
ActiveImagePlusPreprocessor() - Constructor for class net.imagej.legacy.plugin.ActiveImagePlusPreprocessor
 
ActiveOverlayPreprocessor - Class in net.imagej.display.process
Assigns the Overlay of the active ImageDisplay when there is one single unresolved Overlay parameter.
ActiveOverlayPreprocessor() - Constructor for class net.imagej.display.process.ActiveOverlayPreprocessor
 
ActivePositionPreprocessor - Class in net.imagej.display.process
Assigns the Position of the active ImageDisplay when there is one single unresolved Position parameter.
ActivePositionPreprocessor() - Constructor for class net.imagej.display.process.ActivePositionPreprocessor
 
ActiveROIPostprocessor - Class in net.imagej.omero.legacy
Checks if there are any remaining ROIs in the CacheService (put there by CacheROIPostprocessor) and if so attaches them to the active ImagePlus.
ActiveROIPostprocessor() - Constructor for class net.imagej.omero.legacy.ActiveROIPostprocessor
 
activeTool - Variable in class net.imagej.ui.swing.overlay.ToolDelegator
 
add(String) - Method in class net.imagej.display.DefaultWindowService
 
add(String) - Method in interface net.imagej.display.WindowService
Adds a path to the list of window files.
add(URLClassLoader, String) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
add(URLClassLoader, File) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
add(URLClassLoader, URL) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
add(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
Adds the given object to the end of the column.
add(int, Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
add(Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
add(int, Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
add(ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper
 
add(int, ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper
 
add(long, long, long, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
add(double, double, double, double, double, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
add(long, long, long, double, double, double) - Method in interface net.imagej.mesh.Triangles
Adds a triangle to the mesh's triangles list.
add(long, long, long) - Method in interface net.imagej.mesh.Triangles
Adds a triangle to the mesh's triangles list.
add(double, double, double, double, double, double, double, double, double, double, double, double) - Method in interface net.imagej.mesh.Triangles
Adds a triangle to the mesh's triangles list.
add(double, double, double, double, double, double, double, double, double) - Method in interface net.imagej.mesh.Triangles
Adds a triangle to the mesh's triangles list.
add(double, double, double) - Method in interface net.imagej.mesh.Vertices
Adds a vertex.
add(double, double, double, double, double, double, double, double) - Method in interface net.imagej.mesh.Vertices
Adds a vertex.
add(Table<?, ?>) - Method in class net.imagej.omero.LazyTableList
 
add(int, Table<?, ?>) - Method in class net.imagej.omero.LazyTableList
 
add(Roi) - Method in class net.imagej.omero.legacy.LazyOverlay
 
add(Roi, String) - Method in class net.imagej.omero.legacy.LazyOverlay
 
add(Object, Object) - Method in class net.imagej.omero.legacy.LegacyOMEROROIService
 
add(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
Add() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Add
 
Add() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Add
 
Add() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Add
 
Add() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Add
 
Add() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Add
 
add(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
add(float, float) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
add(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
add(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
add(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(T, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(T, T, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<LongType, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
Add() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
add() - Method in class net.imagej.plugins.commands.debug.ButtonDemo
 
add(Object, Object) - Method in interface net.imagej.roi.ROIService
Attaches the given ROI to the given image
add(Table<?, ?>, Dataset) - Method in interface net.imagej.table.TableService
Attaches the given Table to the Dataset
add(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex
Set self to the result of addition between two BigComplex values.
add(BigComplex) - Method in class net.imagej.types.BigComplex
Adds another BigComplex value to self.
add(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
add(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
add(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
add(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
add(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
add(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
add(FileObject) - Method in class net.imagej.updater.FilesCollection
 
add(FileObject, FileObject) - Method in class net.imagej.updater.FilesCollection.DependencyMap
 
addAccelerator(Component, JComponent, ActionListener, int, int) - Static method in class net.imagej.ui.swing.updater.SwingTools
Add a keyboard accelerator to a container.
addAliases(ScriptService) - Method in class net.imagej.legacy.IJ1Helper
Add name aliases for ImageJ1 classes to the ScriptService.
addAll(Collection<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
addAll(int, Collection<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
addAll(Collection<? extends Column<? extends Object>>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
addAll(int, Collection<? extends Column<? extends Object>>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
addAll(Collection<? extends ResultsTable>) - Method in class net.imagej.legacy.convert.TableListWrapper
 
addAll(int, Collection<? extends ResultsTable>) - Method in class net.imagej.legacy.convert.TableListWrapper
 
addAll(Collection<? extends Table<?, ?>>) - Method in class net.imagej.omero.LazyTableList
 
addAll(int, Collection<? extends Table<?, ?>>) - Method in class net.imagej.omero.LazyTableList
 
AddAndScale(RandomAccessibleInterval<T>, Img<T>, float) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
addAuthor(String) - Method in class net.imagej.updater.FileObject
 
AddAxis - Class in net.imagej.plugins.commands.restructure
Adds a new axis to an input Dataset.
AddAxis() - Constructor for class net.imagej.plugins.commands.restructure.AddAxis
 
addButton(String, ActionListener) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
AddByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddByte
 
AddByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddByte
 
AddByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddByte
 
addCategory(String) - Method in class net.imagej.updater.FileObject
 
addCheckbox(String, boolean) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addCheckbox(String, boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addCheckboxGroup(int, int, String[], boolean[]) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addCheckboxGroup(int, int, String[], boolean[], String[]) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addCheckboxGroup(int, int, String[], boolean[]) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addCheckboxGroup(int, int, String[], boolean[], String[]) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addChildren(List<? extends TreeNode<?>>) - Method in class net.imagej.omero.roi.DefaultOMEROROICollection
 
addChoice(String, String[], String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addChoice(String, String[], String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addClassAndInterfaces(Set<String>, Set<String>, String) - Method in class net.imagej.updater.util.DependencyAnalyzer
 
addColumns() - Method in class net.imagej.legacy.convert.TableWrapper
 
addCommand(String, String, String) - Method in class net.imagej.legacy.IJ1Helper
 
addConflict(String, String, boolean, List<File>) - Method in class net.imagej.updater.Checksummer
 
addCustomOption(String, Iterable<FileObject>) - Method in class net.imagej.ui.swing.updater.ViewOptions
 
addCustomViewOptions() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
AddData - Class in net.imagej.plugins.commands.restructure
Adds hyperplanes of data to an input Dataset along a user specified axis.
AddData() - Constructor for class net.imagej.plugins.commands.restructure.AddData
 
addDependency(FilesCollection, FileObject) - Method in class net.imagej.updater.FileObject
 
addDependency(String, File) - Method in class net.imagej.updater.FileObject
 
addDependency(String, long, boolean) - Method in class net.imagej.updater.FileObject
 
addDependency(Dependency) - Method in class net.imagej.updater.FileObject
 
addDeserializerTo(ObjectMapper) - Method in class net.imagej.server.services.DefaultJsonService
 
addDeserializerTo(ObjectMapper) - Method in interface net.imagej.server.services.JsonService
Adds a deserializer to a given ObjectMapper to modify the default behavior.
addDialogListener(DialogListener) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addDialogListener(DialogListener) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addDimensionView(RandomAccessibleInterval<T>, long, long) - Method in class net.imagej.ops.transform.TransformNamespace
Create view which adds a dimension to the source RandomAccessibleInterval.
addDimensionView(RandomAccessible<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Create view which adds a dimension to the source RandomAccessible .
AddDimensionViewMinMax<T> - Class in net.imagej.ops.transform.addDimensionView
AddDimensionViewMinMax() - Constructor for class net.imagej.ops.transform.addDimensionView.AddDimensionViewMinMax
 
addDirectoryField(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addDirectoryField(String, String, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddDouble
 
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddDouble
 
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddDouble
 
addElement(Roi) - Method in class net.imagej.omero.legacy.LazyOverlay
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
addEventDispatcher(AWTDropTargetEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
addf(long, long, long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
addf(float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
addf(long, long, long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
addf(float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
addf(long, long, long, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
addf(float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
addf(long, long, long, float, float, float) - Method in interface net.imagej.mesh.Triangles
Adds a triangle to the mesh's triangles list.
addf(long, long, long) - Method in interface net.imagej.mesh.Triangles
Adds a triangle to the mesh's triangles list.
addf(float, float, float, float, float, float, float, float, float, float, float, float) - Method in interface net.imagej.mesh.Triangles
Adds a triangle to the mesh's triangles list.
addf(float, float, float, float, float, float, float, float, float) - Method in interface net.imagej.mesh.Triangles
Adds a triangle to the mesh's triangles list.
addf(float, float, float, float, float, float, float, float) - Method in interface net.imagej.mesh.Vertices
Adds a vertex.
addf(float, float, float) - Method in interface net.imagej.mesh.Vertices
Adds a vertex.
addFaceInFront(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
addFileField(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addFileField(String, String, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddFloat
 
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddFloat
 
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddFloat
 
addHelp(String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addHelp(String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addImage(ImagePlus) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
AddImage - Class in net.imagej.plugins.commands.overlay
This is a placeholder command for as yet unfinished Add Image command.
AddImage() - Constructor for class net.imagej.plugins.commands.overlay.AddImage
 
addImageChoice(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addInImageJDirectory(URLClassLoader, String) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
AddInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddInt
 
AddInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddInt
 
AddInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddInt
 
addItem(Object) - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
addItem(Object) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
 
addItem(Object) - Method in class net.imagej.updater.util.AbstractProgressable
 
addItem(Object) - Method in interface net.imagej.updater.util.Progress
 
addItem(Object) - Method in class net.imagej.updater.util.StderrProgress
 
addLabel(String, String) - Method in class net.imagej.legacy.convert.TableWrapper
 
addLink(String) - Method in class net.imagej.updater.FileObject
 
AddLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddLong
 
AddLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddLong
 
AddLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddLong
 
addMenuItem(String, String) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Callback for ImageJ 1.x' menu parsing machinery.
addMenuItem(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
addMenuItem(String, String) - Method in class net.imagej.patcher.LegacyHooks
Callback for ImageJ 1.x' menu parsing machinery.
addMenuItems() - Method in class net.imagej.legacy.IJ1Helper
Adds legacy-compatible scripts and commands to the ImageJ1 menu structure.
addMessage(String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addMessage(String, Font) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addMessage(String, Font, Color) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addMessage(String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addMessage(String, Font) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addMessage(String, Font, Color) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addNewSite - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
addNoise(I, O, double, double, double, Random) - Static method in class net.imagej.ops.filter.addNoise.AddNoiseRealType
 
addNoise(O, I, double, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
 
addNoise(O, I, double, double, double, long) - Method in class net.imagej.ops.filter.FilterNamespace
 
addNoise(T, double, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
 
AddNoiseRealType<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.filter.addNoise
Sets the real component of an output real number to the addition of the real component of an input real number with an amount of Gaussian noise.
AddNoiseRealType() - Constructor for class net.imagej.ops.filter.addNoise.AddNoiseRealType
 
AddNoiseRealTypeCFI<T extends RealType<T>> - Class in net.imagej.ops.filter.addNoise
Adds Gaussian noise to a real number.
AddNoiseRealTypeCFI() - Constructor for class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
 
AddNoiseToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by applying a default amount of random noise to an input Dataset.
AddNoiseToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddNoiseToDataValues
 
addNumericField(String, double, int) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addNumericField(String, double, int, int, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addNumericField(String, double) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addNumericField(String, double, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addNumericField(String, double, int, int, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addOrEditUploadSite(List<String>, boolean) - Method in class net.imagej.updater.CommandLine
 
addOrEditUploadSite(String, String, String, String, boolean) - Method in class net.imagej.updater.CommandLine
 
addOverlay(int, Overlay) - Method in class net.imagej.display.OverlayInfoList
 
addOverlay(Overlay) - Method in class net.imagej.display.OverlayInfoList
 
addOverlayInfo(int, OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
 
addOverlayInfo(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
 
addOverlays(ImageDisplay, List<? extends Overlay>) - Method in class net.imagej.display.DefaultOverlayService
 
addOverlays(ImageDisplay, List<? extends Overlay>) - Method in interface net.imagej.display.OverlayService
Adds the list of Overlays to the given ImageDisplay.
addPanel(Panel) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addPanel(Panel, int, Insets) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addPanel(Panel) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addPanel(Panel, int, Insets) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addPlatform(String) - Method in class net.imagej.updater.FileObject
 
addPluginClasspath(ClassLoader) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Adds the class path of a given ClassLoader to the plugin class loader.
addPluginClasspath(File...) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Adds extra elements to the class path of ImageJ 1.x' plugin class loader.
addPluginClasspath(File) - Method in class imagej.patcher.LegacyHooks
Deprecated.
 
addPluginClasspath(ClassLoader) - Method in class net.imagej.patcher.LegacyEnvironment
Adds the class path of a given ClassLoader to the plugin class loader.
addPluginClasspath(File...) - Method in class net.imagej.patcher.LegacyEnvironment
Adds extra elements to the class path of ImageJ 1.x' plugin class loader.
addPluginClasspath(File) - Method in class net.imagej.patcher.LegacyHooks
 
addPluginDirectory(File, String[]) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Extension point to modify the order in which .jar files are added to the PluginClassLoader.
addPluginDirectory(File, String[]) - Method in class net.imagej.patcher.LegacyHooks
Extension point to modify the order in which .jar files are added to the PluginClassLoader.
addPoint(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
addPoissonNoise(O, I) - Method in class net.imagej.ops.filter.FilterNamespace
 
addPoissonNoise(O, I, long) - Method in class net.imagej.ops.filter.FilterNamespace
 
addPoissonNoise(IterableInterval<O>, IterableInterval<I>) - Method in class net.imagej.ops.filter.FilterNamespace
 
AddPoissonNoiseMap<T extends ComplexType<T>> - Class in net.imagej.ops.filter.addPoissonNoise
 
AddPoissonNoiseMap() - Constructor for class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
 
AddPoissonNoiseRealType<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.filter.addPoissonNoise
Sets the real component of an output real number to a real number sampled from a Poisson distribution with lambda of the input real number.
AddPoissonNoiseRealType() - Constructor for class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
 
addPreviewCheckbox(PlugInFilterRunner) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addPreviewCheckbox(PlugInFilterRunner, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addPreviewCheckbox(PlugInFilterRunner) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addPreviewCheckbox(PlugInFilterRunner, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addPreviousVersion(String, long, String) - Method in class net.imagej.updater.FileObject
Deprecated.
addPreviousVersion(FileObject.Version) - Method in class net.imagej.updater.FileObject
 
addPreviousVersion(String, long, String, long) - Method in class net.imagej.updater.FileObject
 
addProgress(Progress) - Method in class net.imagej.updater.util.AbstractProgressable
 
addProgress(Progress) - Method in interface net.imagej.updater.util.Progressable
 
addRadioButtonGroup(String, String[], int, int, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
Adds a radio button group.
addRadioButtonGroup(String, String[], int, int, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
Adds a radio button group.
addROIMapping(Object, ROIData) - Method in class net.imagej.omero.DefaultOMEROService
 
addROIMapping(Object, ROIData) - Method in class net.imagej.omero.legacy.LegacyOMEROService
 
addROIMapping(Object, ROIData) - Method in interface net.imagej.omero.OMEROService
Add a mapping between a ROIs originating from ImageJ and an OMERO ROIData.
addROIs(List<MaskPredicate<?>>) - Method in interface net.imagej.roi.ROITree
Adds the given list of ROIs to the tree.
addRow(Object...) - Method in class net.imagej.notebook.NotebookTable
Adds a row to the table.
adds - Variable in class net.imagej.ui.swing.updater.DiffView
 
addSearchBar(Object, IJ1Helper) - Method in class net.imagej.legacy.search.SearchBarHacker
Adds a search bar to the main image frame.
AddShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddShort
 
AddShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddShort
 
AddShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddShort
 
addSlider(String, double, double, double) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addSlider(String, double, double, double, double) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addSlider(String, double, double, double) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addSlider(String, double, double, double, double) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
AddSpecifiedNoiseToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by applying a user calibrated amount of random noise to an input Dataset.
AddSpecifiedNoiseToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
addStringField(String, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addStringField(String, String, int) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addStringField(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addStringField(String, String, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addText(String) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
addText(String, SimpleAttributeSet) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
addTextAreas(String, String, int, int) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addTextAreas(String, String, int, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
AddToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by adding a user defined constant value to an input Dataset.
AddToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddToDataValues
 
addToolListener(ToolListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
addToRegionOfInterest(BezierPath, GeneralPathRegionOfInterest) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
addToRegionOfInterest(PathIterator, GeneralPathRegionOfInterest) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
addUndoableEditListener(UndoableEditListener) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
 
addUndoableEditListener(UndoableEditListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedByte
 
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedByte
 
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedByte
 
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedInt
 
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedInt
 
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedInt
 
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedLong
 
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedLong
 
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedLong
 
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedShort
 
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedShort
 
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedShort
 
addUpdateSite(String, String, String, String, long) - Method in class net.imagej.updater.FilesCollection
 
addUpdateSite(UpdateSite) - Method in class net.imagej.updater.FilesCollection
 
addUpdateSite(String, UpdateSite) - Method in class net.imagej.updater.FilesCollection
 
addURL - Static variable in class net.imagej.launcher.ClassLoaderPlus
 
addValue(int, double) - Method in class net.imagej.legacy.convert.TableWrapper
 
addVertex(int, RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
This will always throw an UnsupportedOperationException.
addVertex(int, RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
This will always throw an UnsupportedOperationException.
addVertex(int, RealLocalizable) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
addVertices(int, Collection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
This will always throw an UnsupportedOperationException.
addVertices(int, Collection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
This will always throw an UnsupportedOperationException.
addVertices(int, Collection<RealLocalizable>) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
addWindow(Frame) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
addWindow(Frame) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
addWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
addWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
adjustmentValueChanged(AdjustmentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
adjustMinMax(Img<T>, Object) - Static method in class net.imagej.ops.create.img.Imgs
Adjusts the given Img to match the bounds of the specified Interval.
AdminResource - Class in net.imagej.server.resources
Resource for administration.
AdminResource() - Constructor for class net.imagej.server.resources.AdminResource
 
afterCycle() - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
 
afterCycle() - Method in interface net.imagej.ops.morphology.thin.ThinningStrategy
Called by the ThinningOp after each cycle, and thus exactly getIterationsPerCycle()-times per iteration.
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat32
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat64
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Float32
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Float64
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int16
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int32
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int64
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int8
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint16
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint32
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint64
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint8
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.DoG
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Gauss
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Max
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Mean
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Median
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Min
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Sigma
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Variance
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Image.DistanceTransform
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Image.Normalize
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Labeling.CCA
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThan
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThanOrEqual
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.LessThan
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.LessThanOrEqual
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Add
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Complement
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Divide
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.LeftShift
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Multiply
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Power
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Remainder
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.RightShift
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Subtract
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.UnsignedRightShift
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Stats.Mean
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Transform.Crop
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Transform.ScaleView
 
allocateColorTables(ImgPlus<?>) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Modifies an given ImgPlus by allocating 1 color table reference for each plane in the ImgPlus.
allPartialDerivatives(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "partial derivative" operation on all dimensions
allPlanes - Variable in class net.imagej.plugins.commands.assign.MathCommand
 
alpha - Variable in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
alphanumeric_both - Static variable in class net.imagej.server.Utils
 
alphanumeric_lower - Static variable in class net.imagej.server.Utils
 
analyzeByteCode(InputStream, File) - Static method in class net.imagej.updater.Diff
Inspect the byte code of a class file.
analyzeByteCode(InputStream, boolean) - Static method in class net.imagej.updater.Diff
Analyze the byte code of a class file.
analyzeDependencies(FileObject) - Method in class net.imagej.updater.FilesCollection
 
and(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.OMEROText
and(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
And() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.And
 
And() - Constructor for class net.imagej.ops.logic.IIToIIOutputII.And
 
And() - Constructor for class net.imagej.ops.logic.IIToRAIOutputII.And
 
and(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(T, T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
And() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.And
 
and(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
and(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
and(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
 
and(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
 
and(FilesCollection.Filter, FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection
 
AndDataValuesWith<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by ANDing an input Dataset with a user defined constant value.
AndDataValuesWith() - Constructor for class net.imagej.plugins.commands.assign.AndDataValuesWith
 
AngleFigure() - Constructor for class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
 
AngleJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for angle overlays.
AngleJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
AngleJHotDrawAdapter.AngleFigure - Class in net.imagej.ui.swing.overlay
 
AngleOverlay - Class in net.imagej.overlay
Represents an angle having a center point and two end points.
AngleOverlay() - Constructor for class net.imagej.overlay.AngleOverlay
 
AngleOverlay(Context) - Constructor for class net.imagej.overlay.AngleOverlay
 
AngleOverlay(Context, double[], double[], double[]) - Constructor for class net.imagej.overlay.AngleOverlay
 
Animation - Class in net.imagej.animation
The Animation class takes care of running an animation along an axis.
Animation(ImageDisplay) - Constructor for class net.imagej.animation.Animation
Creates an animation for the given ImageDisplay.
animation() - Method in class net.imagej.ImageJ
Gets this application context's AnimationService.
AnimationOptions - Class in net.imagej.plugins.commands.animation
Plugin for adjusting options that affect the behavior of animations.
AnimationOptions() - Constructor for class net.imagej.plugins.commands.animation.AnimationOptions
 
AnimationService - Interface in net.imagej.animation
Interface for service that works with Animations.
AnnotatedSpace<A extends Axis> - Interface in net.imagej.space
A Euclidean space with associated metadata about each dimension of the space.
appAbout() - Method in class net.imagej.legacy.IJ1Helper
Displays the About ImageJ 1.x dialog.
appendColumn() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendColumn(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendColumns(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendColumns(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendRow() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendRow(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendRows(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendRows(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
apply(Iterable<BitType>, Iterable<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
apply(IterableInterval<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
apply(IterableInterval<BitType>, IterableInterval<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
apply(BitType, Comparable<? super T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
apply(BitType, T, T, Comparator<? super T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
applyChanges() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
ApplyConstantThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.apply
Applies the given threshold value to every element along the given Iterable input.
ApplyConstantThreshold() - Constructor for class net.imagej.ops.threshold.apply.ApplyConstantThreshold
 
applyIfApproved() - Method in class net.imagej.updater.URLChange
 
ApplyLookupTable - Class in net.imagej.plugins.commands.misc
Reads a lookup table from a URL.
ApplyLookupTable() - Constructor for class net.imagej.plugins.commands.misc.ApplyLookupTable
 
applyLUT(ColorTable, ImageDisplay) - Method in class net.imagej.lut.DefaultLUTService
 
applyLUT(ColorTable, ImageDisplay) - Method in interface net.imagej.lut.LUTService
Applies the given ColorTable to the active view of the specified ImageDisplay.
applyMacro(String) - Method in class net.imagej.legacy.convert.TableWrapper
 
ApplyManualThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.apply
Applies a threshold to an Img.
ApplyManualThreshold() - Constructor for class net.imagej.ops.threshold.apply.ApplyManualThreshold
 
applyOrUpload - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
applyPatches() - Method in class net.imagej.patcher.LegacyEnvironment
Applies the configuration patches.
applySitesURLUpdates(FilesCollection, List<URLChange>) - Static method in class net.imagej.updater.util.AvailableSites
Apply prepared changes to update site URLs
ApplyThreshold<I,O> - Interface in net.imagej.ops.threshold
An algorithm for applying a threshold value to an object.
applyThreshold - Variable in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
applyThresholdComp - Variable in class net.imagej.ops.threshold.AbstractApplyThresholdIterable
 
ApplyThresholdComparable<T> - Class in net.imagej.ops.threshold.apply
Applies a threshold value (the second input) to the given comparable object, producing a BitType set to 1 iff the object compares above the threshold.
ApplyThresholdComparable() - Constructor for class net.imagej.ops.threshold.apply.ApplyThresholdComparable
 
ApplyThresholdComparator<T> - Class in net.imagej.ops.threshold.apply
Applies a threshold value (the second input) to the given object using the specified comparator, producing a BitType set to 1 iff the object compares above the threshold.
ApplyThresholdComparator() - Constructor for class net.imagej.ops.threshold.apply.ApplyThresholdComparator
 
ApplyThresholdIterable<T,I extends Iterable<T>,O> - Interface in net.imagej.ops.threshold
Interface for ApplyThreshold implementations that operate over an iteration.
ApplyThresholdMethod - Class in net.imagej.ops.threshold
Ops which computes and apply a global threshold to an Img.
ApplyThresholdMethod.Huang<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.IJ1<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Intermodes<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.IsoData<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Li<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.MaxEntropy<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.MaxLikelihood<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Mean<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.MinError<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Minimum<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Moments<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Otsu<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Percentile<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.RenyiEntropy<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Rosin<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Shanbhag<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Triangle<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Yen<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal - Class in net.imagej.ops.threshold
Ops that apply a global threshold locally to a RandomAccessibleInterval.
ApplyThresholdMethodLocal.LocalHuangThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalIJ1Threshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalIntermodesThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalIsoDataThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalLiThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMaxEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMinErrorThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMinimumThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMomentsThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalOtsuThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalPercentileThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalRosinThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalShanbhagThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalTriangleThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalYenThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
appPrefs() - Method in class net.imagej.legacy.IJ1Helper
Handles display of the ImageJ 1.x preferences.
appQuit() - Method in class net.imagej.legacy.IJ1Helper
Handles shutdown of ImageJ 1.x.
AppUtils - Class in net.imagej.util
Useful methods for obtaining details of the ImageJ application environment.
arccos(double) - Method in class net.imagej.ops.math.MathNamespace
 
arccos(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccos() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccos
 
arccosh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccosh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccosh
 
arccot(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccot() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccot
 
arccoth(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccoth() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccoth
 
arccsc(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccsc() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccsc
 
arccsch(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccsch() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccsch
 
arcsec(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arcsec() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsec
 
arcsech(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arcsech() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsech
 
arcsin(double) - Method in class net.imagej.ops.math.MathNamespace
 
arcsin(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arcsin() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsin
 
arcsinh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arcsinh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsinh
 
arctan(double) - Method in class net.imagej.ops.math.MathNamespace
 
arctan(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arctan() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arctan
 
arctanh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arctanh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arctanh
 
areAllSelectedFilesUploadable() - Method in class net.imagej.ui.swing.updater.FileTable
 
areInteger() - Method in class net.imagej.ChannelCollection
Returns true if all channels in the collection can be exactly represented with integer types.
areROIsLoaded() - Method in class net.imagej.omero.legacy.LazyOverlay
Check if the ROIs associated with this Overlay have been downloaded from the OMERO server.
areROIsLoaded() - Method in class net.imagej.omero.roi.LazyROITree
 
arg0() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval
 
args(Object[], Object...) - Static method in class net.imagej.ops.OpUtils
 
arrowLineDecoration - Static variable in class net.imagej.options.OptionsOverlay
 
ArrowTool - Class in net.imagej.plugins.tools
TODO
ArrowTool() - Constructor for class net.imagej.plugins.tools.ArrowTool
 
ascii(IterableInterval<T>, T, T) - Static method in class net.imagej.ops.image.ascii.DefaultASCII
 
ascii(IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "ascii" operation on the given arguments.
ascii(IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "ascii" operation on the given arguments.
ascii(IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "ascii" operation on the given arguments.
ascii - Variable in class net.imagej.plugins.commands.app.EasterEgg
 
asDouble(T) - Method in interface net.imagej.types.DataType
Converts value to a double.
asDouble(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
asDouble(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
asDouble(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
 
asDouble(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
asDouble(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
asDouble(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
 
asDouble(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
 
asDouble(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
asDouble(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
asDouble(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
 
asDouble(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
 
asDouble(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
 
asDouble(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
asDouble(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
 
asDouble(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
asDouble(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
asDouble(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
askChoice(String[]) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
asLong(T) - Method in interface net.imagej.types.DataType
Converts value to a long.
asLong(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
asLong(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
asLong(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
 
asLong(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
asLong(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
asLong(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
 
asLong(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
 
asLong(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
asLong(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
asLong(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
 
asLong(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
 
asLong(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
 
asLong(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
asLong(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
 
asLong(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
asLong(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
asLong(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
asm(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
asm(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
assign(T, T) - Method in class net.imagej.ops.math.MathNamespace
 
Assign() - Constructor for class net.imagej.ops.math.NullaryNumericTypeMath.Assign
 
assignInputs(Module, Object...) - Method in class net.imagej.ops.DefaultOpMatchingService
 
assignInputs(Module, Object...) - Method in interface net.imagej.ops.OpMatchingService
Assigns arguments into the given module's inputs.
asType(ImgPlus<?>, T) - Method in class net.imagej.DefaultImgPlusService
 
asType(ImgPlus<?>, T) - Method in interface net.imagej.ImgPlusService
Given an ImgPlus of unknown type this returns a typed ImgPlus of a given type.
atan2(PreciseFixedFloatType, PreciseFixedFloatType) - Static method in class net.imagej.types.PreciseFixedFloatType
 
atLineStart - Variable in class net.imagej.updater.util.SkipHashedLines
 
attachResultsTable() - Static method in class net.imagej.legacy.Macros
 
AttachROIPostprocessor - Class in net.imagej.omero.legacy
A post-processor which checks if there are ROIs in the CacheService (put there by CacheROIPostprocessor), and checks if they have specific attachment directives.
AttachROIPostprocessor() - Constructor for class net.imagej.omero.legacy.AttachROIPostprocessor
 
Attribute(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
 
authors - Variable in class net.imagej.updater.FileObject
 
AutoContrast - Class in net.imagej.plugins.commands.display
Plugin that auto-thresholds each channel.
AutoContrast() - Constructor for class net.imagej.plugins.commands.display.AutoContrast
 
autoGenerateConfigFile(File) - Method in class imagej.patcher.LegacyHooks
Deprecated.
 
autoGenerateConfigFile(File, File, String, String, StringBuilder) - Method in class imagej.patcher.LegacyHooks
Deprecated.
 
autoGenerateConfigFile(File) - Method in class net.imagej.patcher.LegacyHooks
 
autoGenerateConfigFile(File, File, String, String, StringBuilder) - Method in class net.imagej.patcher.LegacyHooks
 
autoscale(int) - Method in interface net.imagej.display.DatasetView
Autoscales the display range to match the data range, for the given channel.
autoscale(int) - Method in class net.imagej.display.DefaultDatasetView
 
AutoscaleMethod<T extends RealType<T>> - Interface in net.imagej.autoscale
An algorithm for computing suitable display ranges from interval data.
AutoscaleService - Interface in net.imagej.autoscale
Interface for service that works with autoscale algorithms.
autoThreshold() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
AvailableSites - Class in net.imagej.updater.util
Utility class for parsing the list of available update sites.
AvailableTensorFlowVersions - Class in net.imagej.tensorflow.ui
Utility class providing a hardcoded list of available native TensorFlow library versions which can be downloaded from the google servers.
AvailableTensorFlowVersions() - Constructor for class net.imagej.tensorflow.ui.AvailableTensorFlowVersions
 
averageScale(double, double) - Method in class net.imagej.axis.AbstractCalibratedAxis
 
averageScale(double, double) - Method in interface net.imagej.axis.CalibratedAxis
Returns the average scale between two raw value coordinates along an axis.
averageScale(int) - Method in class net.imagej.display.DefaultImageDisplay
 
averageScale(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
 
averageScale(int) - Method in class net.imagej.interval.CombinedCalibratedRealInterval
 
averageScale(int) - Method in interface net.imagej.space.CalibratedSpace
Returns the average scale along the given axis, for some reasonable interval.
AWTRenderingService - Class in net.imagej.ui.awt
AWT-based implementation of text rendering service.
AWTRenderingService() - Constructor for class net.imagej.ui.awt.AWTRenderingService
 
AWTScreenCaptureService - Class in net.imagej.ui.awt
An AWT implementation of the ScreenCaptureService interface.
AWTScreenCaptureService() - Constructor for class net.imagej.ui.awt.AWTScreenCaptureService
 
AWTTextRenderer - Class in net.imagej.ui.awt
The AWT implementation of the TextRenderer interface.
AWTTextRenderer() - Constructor for class net.imagej.ui.awt.AWTTextRenderer
 
Axes - Class in net.imagej.axis
An extensible enumeration of dimensional AxisTypes.
axes(CalibratedAxis[]) - Method in class net.imagej.DefaultDataset
 
axes(CalibratedAxis[]) - Method in class net.imagej.display.DefaultImageDisplay
 
axes(A[]) - Method in class net.imagej.space.AbstractAnnotatedSpace
 
axes(A[]) - Method in interface net.imagej.space.AnnotatedSpace
Copies the space's axes into the given array.
axes(A[]) - Method in class net.imagej.space.CombinedSpace
 
Axis - Interface in net.imagej.axis
A dimensional axis of an AnnotatedSpace.
axis(AxisType) - Method in interface net.imagej.Dataset
Gets the axis of the given type.
axis(int) - Method in class net.imagej.DefaultDataset
 
axis(int) - Method in class net.imagej.display.DefaultImageDisplay
 
axis(int) - Method in class net.imagej.space.AbstractAnnotatedSpace
 
axis(int) - Method in interface net.imagej.space.AnnotatedSpace
Gets the axis associated with the given dimension of the space.
axis(int) - Method in class net.imagej.space.CombinedSpace
 
AxisActivatedEvent - Class in net.imagej.display.event
An event indicating an axis has become the active one.
AxisActivatedEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisActivatedEvent
 
axisChanged() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
Updates the first and last values when the axis changes.
axisChanged() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
Updates the last value when the axis changes.
axisChanged() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
 
AxisEvent - Class in net.imagej.display.event
An event indicating that one of an ImageDisplay's dimensional axes has changed.
AxisEvent(ImageDisplay) - Constructor for class net.imagej.display.event.AxisEvent
 
AxisEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisEvent
 
AxisPositionBackward - Class in net.imagej.plugins.commands.axispos
Updates the current display to show the previous plane along an axis
AxisPositionBackward() - Constructor for class net.imagej.plugins.commands.axispos.AxisPositionBackward
 
AxisPositionEvent - Class in net.imagej.display.event
An event indicating that a display's dimensional position has changed.
AxisPositionEvent(ImageDisplay) - Constructor for class net.imagej.display.event.AxisPositionEvent
 
AxisPositionEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisPositionEvent
 
AxisPositionForward - Class in net.imagej.plugins.commands.axispos
Updates the current display to show the next plane along an axis
AxisPositionForward() - Constructor for class net.imagej.plugins.commands.axispos.AxisPositionForward
 
AxisPositionHandler - Class in net.imagej.plugins.tools
Handles keyboard and mouse wheel operations that change the dimensional position.
AxisPositionHandler() - Constructor for class net.imagej.plugins.tools.AxisPositionHandler
 
AxisSubrange - Class in net.imagej.sampler
An AxisSubrange defines a set of position indices using various constructors.
AxisSubrange(long) - Constructor for class net.imagej.sampler.AxisSubrange
Create an AxisSubrange from a single value.
AxisSubrange(long, long) - Constructor for class net.imagej.sampler.AxisSubrange
Create an AxisSubrange from one position to another position and everything in between.
AxisSubrange(long, long, long) - Constructor for class net.imagej.sampler.AxisSubrange
Create an AxisSubrange from one position to another position stepping by a given value.
AxisSubrange(ImageDisplay, AxisType, String, boolean) - Constructor for class net.imagej.sampler.AxisSubrange
Create an AxisSubrange from a String definition.
AxisType - Interface in net.imagej.axis
A dimensional axis type, for describing the dimensions of a TypedSpace.

B

b() - Method in class net.imagej.axis.Variable2Axis
 
B(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds
The partial sum B from C.
backgroundChange() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
base64(RenderedImage) - Static method in class net.imagej.notebook.Images
 
BASE_PRIORITY - Static variable in class net.imagej.plugins.tools.AbstractColorTool
 
Batch() - Constructor for class net.imagej.legacy.LegacyCommandline.Batch
 
bck(int) - Method in class net.imagej.display.AbstractDataView
 
bck(int) - Method in class net.imagej.display.DefaultImageDisplay
 
bck(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
bck() - Method in class net.imagej.Position
Moves the Position backward by one step.
bck(int) - Method in class net.imagej.Position
Moves the Position backward one step in specified dimension.
BCViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain
Base class for BinaryComputerOps that delegate to other BinaryComputerOps.
BCViaBC() - Constructor for class net.imagej.ops.special.chain.BCViaBC
 
BCViaBCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryComputerOps that delegate to other BinaryComputerOps with all matching types (inputs same as output).
BCViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BCViaBCAllSame
 
BCViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryComputerOps that delegate to other BinaryComputerOps with the same input and output types.
BCViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BCViaBCSameIO
 
Benchmark - Class in net.imagej.plugins.commands.misc
This is a placeholder command for as yet unfinished Benchmark command.
Benchmark() - Constructor for class net.imagej.plugins.commands.misc.Benchmark
 
beta - Variable in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
BezierPathFunctions - Class in net.imagej.ui.swing.overlay
Utility functions for GeneralPathJHotDrawAdapter.
BezierPathFunctions() - Constructor for class net.imagej.ui.swing.overlay.BezierPathFunctions
 
BezierPathFunctions.OP - Enum in net.imagej.ui.swing.overlay
 
BFViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to BinaryComputerOps.
BFViaBC() - Constructor for class net.imagej.ops.special.chain.BFViaBC
 
BFViaBCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to BinaryComputerOps with all matching types (inputs same as output).
BFViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BFViaBCAllSame
 
BFViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to BinaryComputerOps with the same input and output types.
BFViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BFViaBCSameIO
 
BFViaBF<I1 extends DI1,I2 extends DI2,O,DI1,DI2,DO extends O> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps.
BFViaBF() - Constructor for class net.imagej.ops.special.chain.BFViaBF
 
BFViaBFAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps with all matching types (inputs same as output).
BFViaBFAllSame() - Constructor for class net.imagej.ops.special.chain.BFViaBFAllSame
 
BFViaBFSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps with the same input and output types.
BFViaBFSameIO() - Constructor for class net.imagej.ops.special.chain.BFViaBFSameIO
 
BgColorTool - Class in net.imagej.plugins.tools
The tool that displays the current background color.
BgColorTool() - Constructor for class net.imagej.plugins.tools.BgColorTool
 
BHCFViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryComputerOps.
BHCFViaBC() - Constructor for class net.imagej.ops.special.chain.BHCFViaBC
 
BHCFViaBCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryComputerOps with all matching types (inputs same as output).
BHCFViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BHCFViaBCAllSame
 
BHCFViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryComputerOps with the same input and output types.
BHCFViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BHCFViaBCSameIO
 
BHCFViaBHCF<I1 extends DI1,I2 extends DI2,O,DI1,DI2> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryHybridCFs.
BHCFViaBHCF() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCF
 
BHCFViaBHCFAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryHybridCFs with all matching types (inputs same as output).
BHCFViaBHCFAllSame() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCFAllSame
 
BHCFViaBHCFSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryHybridCFs with the same input and output types.
BHCFViaBHCFSameIO() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCFSameIO
 
BIG_FONT_SIZE - Static variable in class net.imagej.ui.swing.updater.DiffView
 
bigBold - Variable in class net.imagej.ui.swing.updater.DiffView
 
BigComplex - Class in net.imagej.types
A complex number that stores values in BigDecimal (arbitrary) precision.
BigComplex() - Constructor for class net.imagej.types.BigComplex
Default constructor: value = (0,0).
BigComplex(long, long) - Constructor for class net.imagej.types.BigComplex
Constructor from longs.
BigComplex(double, double) - Constructor for class net.imagej.types.BigComplex
Constructor from doubles.
BigComplex(BigInteger, BigInteger) - Constructor for class net.imagej.types.BigComplex
Constructor from BigIntegers.
BigComplex(BigDecimal, BigDecimal) - Constructor for class net.imagej.types.BigComplex
Constructor from BigDecimals.
BigComplex(String, String) - Constructor for class net.imagej.types.BigComplex
Constructor from Strings.
bilateral(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, double, double, int) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "bilateral" filter on the given arguments.
bimodalTest(double[]) - Static method in class net.imagej.ops.threshold.Thresholds
 
Binarize<T extends RealType<T>> - Class in net.imagej.plugins.commands.binary
Creates or updates a mask Dataset of type BitType.
Binarize() - Constructor for class net.imagej.plugins.commands.binary.Binarize
 
binary(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.function.Functions
Gets the best BinaryFunctionOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.function.Functions
Gets the best BinaryFunctionOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best BinaryInplaceOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, O, O, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best BinaryInplaceOp implementation for the given types and arguments, populating its inputs.
binary1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best BinaryInplace1Op implementation for the given types and arguments, populating its inputs.
binary1(OpEnvironment, Class<? extends Op>, O, I2, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best BinaryInplace1Op implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, O, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, Class<O>, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, O, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
BinaryCompositeMaskPredicateToShapeRoiConverter - Class in net.imagej.legacy.convert.roi
BinaryCompositeMaskPredicateToShapeRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
 
binaryComputer(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
binaryComputer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
binaryComputer(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
BinaryComputerOp<I1,I2,O> - Interface in net.imagej.ops.special.computer
A binary computer computes a result from two given inputs, storing it into the specified output reference.
binaryFunction(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
binaryFunction(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
binaryFunction(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
BinaryFunctionOp<I1,I2,O> - Interface in net.imagej.ops.special.function
A binary function calculates a result from two given inputs, returning it as a new object.
binaryHybrid(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
binaryHybrid(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
binaryHybrid(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
BinaryHybridCF<I1,I2,O> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp or BinaryFunctionOp.
BinaryHybridCFI<I,O extends I> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp, BinaryFunctionOp or BinaryInplaceOp.
BinaryHybridCFI1<I1,I2,O extends I1> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp, BinaryFunctionOp or BinaryInplace1Op.
BinaryHybridCI<I,O extends I> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp or BinaryInplaceOp.
BinaryHybridCI1<I1,I2,O extends I1> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp, or BinaryInplace1Op.
BinaryInplace1OnlyOp<A,I> - Interface in net.imagej.ops.special.inplace
A BinaryInplace1Op which is not a hybrid.
BinaryInplace1Op<I1,I2,O extends I1> - Interface in net.imagej.ops.special.inplace
A binary inplace operation which computes a result from two given arguments, storing it back into the first input (i.e., mutating it).
BinaryInplaceOnlyOp<A> - Interface in net.imagej.ops.special.inplace
A BinaryInplaceOp which is not a hybrid.
BinaryInplaceOp<I,O extends I> - Interface in net.imagej.ops.special.inplace
A binary inplace operation is an op which computes a result from two given arguments, storing it either the first or second argument (i.e., mutating it).
BinaryInput<I1,I2> - Interface in net.imagej.ops.special
Interface for objects with two typed input parameters.
BinaryMaskOverlay<U extends BitType,V extends Img<U>> - Class in net.imagej.overlay
TODO
BinaryMaskOverlay() - Constructor for class net.imagej.overlay.BinaryMaskOverlay
 
BinaryMaskOverlay(Context) - Constructor for class net.imagej.overlay.BinaryMaskOverlay
 
BinaryMaskOverlay(Context, BinaryMaskRegionOfInterest<U, V>) - Constructor for class net.imagej.overlay.BinaryMaskOverlay
 
BinaryOp<I1,I2,O> - Interface in net.imagej.ops.special
A binary operation computes a result from two given inputs.
BinaryOutputFactory<I1,I2,O> - Interface in net.imagej.ops.special
Factory which creates a typed output object given two typed inputs.
BinaryRealTypeMath - Class in net.imagej.ops.math
Binary Ops of the math namespace which operate on RealTypes.
BinaryRealTypeMath.Add<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the addition of the real components of two input real numbers.
BinaryRealTypeMath.And<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the logical AND of the real component of two input real numbers.
BinaryRealTypeMath.Divide<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the division of the real component of two input real numbers.
BinaryRealTypeMath.Multiply<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the multiplication of the real component of two input real numbers.
BinaryRealTypeMath.Or<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the logical OR of the real component of two input real numbers.
BinaryRealTypeMath.Subtract<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the subtraction between the real component of two input real numbers.
BinaryRealTypeMath.Xor<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the logical XOR of the real component of two input real numbers.
Binner<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib
Reduces the size of an image by integral scale factors.
Binner() - Constructor for class net.imagej.plugins.commands.imglib.Binner
 
BIOViaBI<A extends DO,DI,DO extends DI> - Class in net.imagej.ops.special.chain
Base class for BinaryInplaceOnlyOps that delegate to BinaryInplaceOps.
BIOViaBI() - Constructor for class net.imagej.ops.special.chain.BIOViaBI
 
BIOViaBISame<A> - Class in net.imagej.ops.special.chain
Base class for BinaryInplaceOnlyOps that delegate to BinaryInplaceOps with all matching types (inputs same as output).
BIOViaBISame() - Constructor for class net.imagej.ops.special.chain.BIOViaBISame
 
Bit() - Constructor for class net.imagej.ops.convert.ConvertImages.Bit
 
bit(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(Img<BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(long) - Static method in class net.imagej.ops.convert.Types
 
bit(double) - Static method in class net.imagej.ops.convert.Types
 
bit(boolean) - Static method in class net.imagej.ops.convert.Types
 
bit(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
bitCount() - Method in interface net.imagej.types.DataType
Number of bits of information required to represent data in the type.
bitCount() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
bitCount() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataType16BitSignedInteger
 
bitCount() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataType32BitSignedFloat
 
bitCount() - Method in class net.imagej.types.DataType32BitSignedInteger
 
bitCount() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
bitCount() - Method in class net.imagej.types.DataType64BitSignedFloat
 
bitCount() - Method in class net.imagej.types.DataType64BitSignedInteger
 
bitCount() - Method in class net.imagej.types.DataType8BitSignedInteger
 
bitCount() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataTypeBoolean
 
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
BitTypeVertexInterpolator - Class in net.imagej.ops.geom.geom3d.mesh
The BitTypeVertexInterpolator returns the point which is in the middle of the two input vertices.
BitTypeVertexInterpolator() - Constructor for class net.imagej.ops.geom.geom3d.mesh.BitTypeVertexInterpolator
 
bitwiseAnd(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
bitwiseOr(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
BLACK - Static variable in class net.imagej.plugins.commands.binary.Binarize
 
blackTopHat(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
blackTopHat(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
blankLine() - Method in class net.imagej.ui.swing.updater.FileDetails
 
BLUE - Static variable in class net.imagej.display.ColorTables
 
bold - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
bold - Variable in class net.imagej.ui.swing.updater.DiffView
 
bold(String) - Method in class net.imagej.ui.swing.updater.FileDetails
 
bold - Variable in class net.imagej.ui.swing.updater.FileTable
 
BooleanAnd() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanAnd
 
BooleanEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanEqual
 
BooleanNot() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanNot
 
BooleanNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanNotEqual
 
BooleanOr() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanOr
 
BooleanTypeLogic - Class in net.imagej.ops.logic
Logic operations with BooleanType as output.
BooleanTypeLogic.And<T extends BooleanType<T>> - Class in net.imagej.ops.logic
Performs logical and (&&) between two BooleanTypes.
BooleanTypeLogic.ComparableGreaterThan<I extends Comparable<I>,O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs greater-than (>) between two Comparables.
BooleanTypeLogic.ComparableGreaterThanOrEqual<I extends Comparable<I>,O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs greater-than-or-equal (>=) between two Comparables.
BooleanTypeLogic.ComparableLessThan<I extends Comparable<I>,O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs less-than (<) between two Comparables.
BooleanTypeLogic.ComparableLessThanOrEqual<I extends Comparable<I>,O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs less-than-or-equal (<=) between two Comparables.
BooleanTypeLogic.Not<T extends BooleanType<T>> - Class in net.imagej.ops.logic
Performs logical not (!) on a BooleanType.
BooleanTypeLogic.ObjectsEqual<O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs equals (==) between two Objects.
BooleanTypeLogic.ObjectsNotEqual<O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs not-equals (!=) between two Objects.
BooleanTypeLogic.Or<T extends BooleanType<T>> - Class in net.imagej.ops.logic
Performs logical or (||) between two BooleanTypes.
BooleanTypeLogic.Xor<T extends BooleanType<T>> - Class in net.imagej.ops.logic
Performs logical xor (^) between two BooleanTypes.
BooleanXor() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanXor
 
BOOTSTRAP_REMOTE_URL - Static variable in class net.imagej.launcher.RemoteUpdater
 
bothInstallAndUninstall(FileObject, FilesCollection, FilesCollection) - Method in class net.imagej.updater.Conflicts
 
bottomPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
bottomPanel2 - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
boundaryPixelCount(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCount(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCountConvexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCountConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCountConvexHull(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCountConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySize(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySize(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySize(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySize(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySizeConvexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySizeConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySizeConvexHull(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySizeConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
boundaryType() - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper
 
boundaryType() - Method in class net.imagej.omero.legacy.text.OMEROText
boundaryType() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
boundaryType() - Method in class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval
 
boundaryType() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
 
boundaryType() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMask
 
boundaryType(S, OMEROSession, LogService) - Static method in class net.imagej.omero.roi.ROIConverters
Gets the boundary behavior of this shape.
boundingBox(Mesh) - Static method in class net.imagej.mesh.Meshes
 
boundingBox(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
bounds - Variable in class net.imagej.ui.swing.overlay.PointFigure
 
BoxCount<B extends BooleanType<B>> - Class in net.imagej.ops.topology
An N-dimensional version of fixed-grid box counting algorithm that can be used to estimate the fractal dimension of an interval
BoxCount() - Constructor for class net.imagej.ops.topology.BoxCount
 
boxCount(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxCount(RandomAccessibleInterval<B>, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxCount(RandomAccessibleInterval<B>, Long, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxCount(RandomAccessibleInterval<B>, Long, Long, Double) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxCount(RandomAccessibleInterval<B>, Long, Long, Double, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxivity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
boxivity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boxivity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
boxivity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boxLayoutPanel(int) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
BoxToRoiConverter - Class in net.imagej.legacy.convert.roi.box
Converts a Box to a Roi.
BoxToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
 
BoxWrapper - Class in net.imagej.legacy.convert.roi.box
A Roi with an associated WritableBox.
BoxWrapper(WritableBox) - Constructor for class net.imagej.legacy.convert.roi.box.BoxWrapper
 
braces(Object[]) - Method in class net.imagej.ops.eval.OpEvaluator
 
brackets(Object[]) - Method in class net.imagej.ops.eval.OpEvaluator
 
BrightnessContrast<T extends RealType<T>> - Class in net.imagej.plugins.commands.display.interactive
Plugin that sets the minimum and maximum for scaling of display values.
BrightnessContrast() - Constructor for class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
brightnessContrastChanged() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
Called when brightness or contrast changes.
bufferedImage(Dataset) - Static method in class net.imagej.notebook.Images
Converts the given Dataset to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>) - Static method in class net.imagej.notebook.Images
Converts the given RandomAccessibleInterval to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>, double, double) - Static method in class net.imagej.notebook.Images
Converts the given RandomAccessibleInterval to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>, double[], double[]) - Static method in class net.imagej.notebook.Images
Converts the given RandomAccessibleInterval to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>, int, int, int, NotebookService.ValueScaling, long...) - Static method in class net.imagej.notebook.Images
Converts the given RandomAccessibleInterval to a BufferedImage.
bufferedImage(RandomAccessibleInterval<T>, int, int, int, double[], double[], long...) - Static method in class net.imagej.notebook.Images
Converts the given RandomAccessibleInterval to a BufferedImage.
BufferedImageToHTMLConverter - Class in net.imagej.notebook.image
Converter from BufferedImage to HTMLObject.
BufferedImageToHTMLConverter() - Constructor for class net.imagej.notebook.image.BufferedImageToHTMLConverter
 
BufferFactory<A,B> - Interface in net.imagej.ops.join
An object which can produce buffers using a UnaryOutputFactory.
BufferMesh - Class in net.imagej.mesh.nio
Mesh implemented using Buffer objects.
BufferMesh(int, int) - Constructor for class net.imagej.mesh.nio.BufferMesh
 
BufferMesh(int, int, boolean) - Constructor for class net.imagej.mesh.nio.BufferMesh
 
BufferMesh(int, int, Function<Integer, ByteBuffer>) - Constructor for class net.imagej.mesh.nio.BufferMesh
 
BufferMesh(FloatBuffer, FloatBuffer, FloatBuffer, IntBuffer, FloatBuffer) - Constructor for class net.imagej.mesh.nio.BufferMesh
 
BufferMesh.Triangles - Class in net.imagej.mesh.nio
 
BufferMesh.Vertices - Class in net.imagej.mesh.nio
 
button(String, String, ActionListener, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
ButtonDemo - Class in net.imagej.plugins.commands.debug
This command is example code that shows how one can make @Parameters that are Buttons which can fire callbacks when pressed.
ButtonDemo() - Constructor for class net.imagej.plugins.commands.debug.ButtonDemo
 
ByteCodeAnalyzer - Class in net.imagej.updater.util
An analyzer to find out which .jar files a given .jar file depends on.
ByteCodeAnalyzer(byte[]) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
 
ByteCodeAnalyzer(byte[], boolean) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
 
ByteCodeAnalyzer(byte[], ByteCodeAnalyzer.Mode) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
 
ByteCodeAnalyzer.Attribute - Class in net.imagej.updater.util
 
ByteCodeAnalyzer.Field - Class in net.imagej.updater.util
 
ByteCodeAnalyzer.Interface - Class in net.imagej.updater.util
 
ByteCodeAnalyzer.Method - Class in net.imagej.updater.util
 
ByteCodeAnalyzer.Mode - Enum in net.imagej.updater.util
 
bytes - Variable in class net.imagej.updater.FilesUploader.DbXmlFile
 
ByteTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ByteTableToResultsTable
 

C

c() - Method in class net.imagej.axis.Variable3Axis
 
C(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds
The partial sum C from C.
CachedModelBundle - Class in net.imagej.tensorflow
A wrapper for SavedModelBundle remembering if it got closed.
CachedModelBundle(String, String[]) - Constructor for class net.imagej.tensorflow.CachedModelBundle
 
CachedOpEnvironment - Class in net.imagej.ops.cached
Creates CachedFunctionOps which know how to cache their outputs.
CachedOpEnvironment(OpEnvironment) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
 
CachedOpEnvironment(OpEnvironment, Collection<? extends OpInfo>) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
 
CachedOpEnvironment(OpEnvironment, Collection<? extends OpInfo>, Collection<Class<?>>) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
 
cacheFile(URL, boolean) - Method in class net.imagej.updater.Diff
Cache a file locally.
CacheROIPostprocessor - Class in net.imagej.omero.legacy
A Postprocessor which checks if there are ROIs as outputs.
CacheROIPostprocessor() - Constructor for class net.imagej.omero.legacy.CacheROIPostprocessor
 
calcOutputValue() - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher
Called after neighborhood is completely visited.
calculate(Iterable<T>, Iterable<U>) - Method in class net.imagej.ops.coloc.icq.LiICQ
 
calculate(Iterable<T>, Iterable<U>) - Method in class net.imagej.ops.coloc.kendallTau.KendallTauBRank
 
calculate(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Method in class net.imagej.ops.coloc.maxTKendallTau.MTKT
 
calculate(Iterable<T>, Iterable<U>) - Method in class net.imagej.ops.coloc.pearsons.DefaultPearsons
 
calculate(Dimensions, T) - Method in class net.imagej.ops.create.img.CreateImgFromDimsAndType
 
calculate(Img<T>) - Method in class net.imagej.ops.create.img.CreateImgFromImg
 
calculate(Img<T>) - Method in class net.imagej.ops.create.imgFactory.CreateImgFactoryFromImg
 
calculate() - Method in class net.imagej.ops.create.imgFactory.DefaultCreateImgFactory
 
calculate(Interval) - Method in class net.imagej.ops.create.imgLabeling.CreateImgLabelingFromInterval
 
calculate(Dimensions) - Method in class net.imagej.ops.create.imgLabeling.DefaultCreateImgLabeling
 
calculate(Img<T>) - Method in class net.imagej.ops.create.imgPlus.DefaultCreateImgPlus
 
calculate() - Method in class net.imagej.ops.create.integerType.DefaultCreateIntegerType
 
calculate(double[][]) - Method in class net.imagej.ops.create.kernel.CreateKernel2D
 
calculate(double[], Integer) - Method in class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernel2ndDerivBiGauss
 
calculate(double[], Integer) - Method in class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernelBiGauss
 
calculate(Dimensions) - Method in class net.imagej.ops.create.kernelDiffraction.DefaultCreateKernelGibsonLanni
 
calculate(Double, double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropic
 
calculate(double[], double[]) - Method in class net.imagej.ops.create.kernelGabor.DefaultCreateKernelGabor
 
calculate(Double) - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetric
 
calculate(double[]) - Method in class net.imagej.ops.create.kernelGauss.DefaultCreateKernelGauss
 
calculate(Double) - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetric
 
calculate(double[]) - Method in class net.imagej.ops.create.kernelLog.DefaultCreateKernelLog
 
calculate() - Method in class net.imagej.ops.create.kernelSobel.CreateKernelSobel
 
calculate() - Method in class net.imagej.ops.create.labelingMapping.DefaultCreateLabelingMapping
 
calculate() - Method in class net.imagej.ops.create.nativeType.DefaultCreateNativeType
 
calculate(Class<T>) - Method in class net.imagej.ops.create.object.CreateObjectFromClass
 
calculate(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.deconvolve.NonCirculantFirstGuess
 
calculate(String) - Method in class net.imagej.ops.eval.DefaultEval
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocHXY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocMeanX
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocMeanY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPX
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPXMinusY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPXPlusY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocStdX
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocStdY
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
 
calculate(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF
 
calculate(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFTF
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.derivative.PartialDerivativesRAI
 
calculate(Dimensions, T) - Method in class net.imagej.ops.filter.fft.CreateOutputFFTMethods
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.fft.FFTMethodsOpF
 
calculate(Dimensions) - Method in class net.imagej.ops.filter.fftSize.ComputeFFTMethodsSize
 
calculate(Dimensions) - Method in class net.imagej.ops.filter.fftSize.DefaultComputeFFTSize
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.hessian.HessianRAI
 
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PaddingIntervalCentered
 
calculate(I, Interval) - Method in class net.imagej.ops.filter.pad.PaddingIntervalOrigin
 
calculate(I) - Method in class net.imagej.ops.filter.pad.PadInput
 
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PadInputFFT
 
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PadShiftKernel
 
calculate(IterableInterval<?>) - Method in class net.imagej.ops.geom.CentroidII
 
calculate(LabelRegion<?>) - Method in class net.imagej.ops.geom.CentroidLabelRegion
 
calculate(Mesh) - Method in class net.imagej.ops.geom.CentroidMesh
 
calculate(Polygon2D) - Method in class net.imagej.ops.geom.CentroidPolygon
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.geom.DefaultCenterOfGravity
 
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultBoundingBox
 
calculate(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.geom.geom2d.DefaultContour
 
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultConvexHull2D
 
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeret
 
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeret
 
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinorMajorAxis
 
calculate(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultConvexHull3D
 
calculate(IterableRegion<B>) - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.geom.geom3d.DefaultMarchingCubes
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVolumeMesh
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVoxelization3D
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultSmallestOrientedBoundingBox
 
calculate(IterableInterval<?>) - Method in class net.imagej.ops.geom.SizeII
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.ascii.DefaultASCII
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
 
calculate(Iterable<T>) - Method in class net.imagej.ops.image.histogram.HistogramCreate
 
calculate(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.image.integral.WrappedIntegralImg
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction
 
calculate(String) - Method in class net.imagej.ops.lookup.LookupByName
 
calculate(Class<? extends Op>) - Method in class net.imagej.ops.lookup.LookupByType
 
calculate(IterableInterval<EI>) - Method in class net.imagej.ops.map.MapViewIIToII
 
calculate(RandomAccessibleInterval<EI>) - Method in class net.imagej.ops.map.MapViewRAIToRAI
 
calculate(RandomAccessible<EI>) - Method in class net.imagej.ops.map.MapViewRandomAccessToRandomAccess
 
calculate(String) - Method in class net.imagej.ops.run.RunByName
 
calculate(Op) - Method in class net.imagej.ops.run.RunByOp
 
calculate(Class<? extends Op>) - Method in class net.imagej.ops.run.RunByType
 
calculate(List<? extends WritablePolyline>) - Method in class net.imagej.ops.segment.detectJunctions.DefaultDetectJunctions
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.segment.detectRidges.DefaultDetectRidges
 
calculate(I1, I2) - Method in class net.imagej.ops.special.chain.BFViaBC
 
calculate(I1, I2) - Method in class net.imagej.ops.special.chain.BFViaBF
 
calculate(I) - Method in class net.imagej.ops.special.chain.UFViaUC
 
calculate(I) - Method in class net.imagej.ops.special.chain.UFViaUF
 
calculate(I1, I2) - Method in interface net.imagej.ops.special.function.BinaryFunctionOp
Calculates the output given two inputs.
calculate(I1) - Method in interface net.imagej.ops.special.function.BinaryFunctionOp
 
calculate() - Method in interface net.imagej.ops.special.function.NullaryFunctionOp
Calculates the output value.
calculate(I) - Method in interface net.imagej.ops.special.function.UnaryFunctionOp
Calculates the output given some input.
calculate() - Method in interface net.imagej.ops.special.function.UnaryFunctionOp
 
calculate(I1, I2) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
 
calculate(I1) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
 
calculate() - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF
 
calculate(I) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
 
calculate() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
 
calculate(Iterable<I>) - Method in class net.imagej.ops.stats.DefaultMinMax
 
calculate(Collection<Vector3d>) - Method in class net.imagej.ops.stats.regression.leastSquares.Quadric
 
calculate(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.BoxCount
Counts the number of boxes that have foreground in the interval repeatedly with different size boxes
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.addDimensionView.AddDimensionViewMinMax
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.addDimensionView.DefaultAddDimensionView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeIntervalView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeIntervalView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeIntervalView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeView
 
calculate(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.concatenateView.ConcatenateViewWithAccessMode
 
calculate(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.concatenateView.DefaultConcatenateView
 
calculate(ImgPlus<T>, Interval) - Method in class net.imagej.ops.transform.crop.CropImgPlus
 
calculate(RandomAccessibleInterval<T>, Interval) - Method in class net.imagej.ops.transform.crop.CropRAI
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.dropSingletonDimensionsView.DefaultDropSingletonDimensionsView
 
calculate(F) - Method in class net.imagej.ops.transform.extendBorderView.DefaultExtendBorderView
 
calculate(F) - Method in class net.imagej.ops.transform.extendMirrorDoubleView.DefaultExtendMirrorDoubleView
 
calculate(F) - Method in class net.imagej.ops.transform.extendMirrorSingleView.DefaultExtendMirrorSingleView
 
calculate(F) - Method in class net.imagej.ops.transform.extendPeriodicView.DefaultExtendPeriodicView
 
calculate(F) - Method in class net.imagej.ops.transform.extendRandomView.DefaultExtendRandomView
 
calculate(F) - Method in class net.imagej.ops.transform.extendValueView.DefaultExtendValueView
 
calculate(F) - Method in class net.imagej.ops.transform.extendView.DefaultExtendView
 
calculate(F) - Method in class net.imagej.ops.transform.extendZeroView.DefaultExtendZeroView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.flatIterableView.DefaultFlatIterableView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.hyperSliceView.DefaultHyperSliceView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.hyperSliceView.IntervalHyperSliceView
 
calculate(I) - Method in class net.imagej.ops.transform.interpolateView.DefaultInterpolateView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.intervalView.DefaultIntervalView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.intervalView.IntervalViewMinMax
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.invertAxisView.DefaultInvertAxisView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.invertAxisView.IntervalInvertAxisView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.DefaultOffsetView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.OffsetViewInterval
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.OffsetViewOriginSize
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesInverseView.DefaultPermuteCoordinatesInverseView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesInverseView.PermuteCoordinateInverseViewOfDimension
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesView.DefaultPermuteCoordinatesView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesView.PermuteCoordinatesViewOfDimension
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.permuteView.DefaultPermuteView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteView.IntervalPermuteView
 
calculate(RealRandomAccessible<T>) - Method in class net.imagej.ops.transform.rasterView.DefaultRasterView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.rotateView.DefaultRotateView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.rotateView.IntervalRotateView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.scaleView.DefaultScaleView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.shearView.DefaultShearView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.shearView.ShearViewInterval
 
calculate(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.stackView.DefaultStackView
 
calculate(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.stackView.StackViewWithAccessMode
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.subsampleView.DefaultSubsampleView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.subsampleView.IntervalSubsampleView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.subsampleView.SubsampleIntervalViewStepsForDims
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.subsampleView.SubsampleViewStepsForDims
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.translateView.DefaultTranslateView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.translateView.IntervalTranslateView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.unshearView.DefaultUnshearView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.unshearView.UnshearViewInterval
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.zeroMinView.DefaultZeroMinView
 
calculateNormals(Mesh, Mesh) - Static method in class net.imagej.mesh.Meshes
Calculates the normals for a mesh.
calculateTotalSize(List<Uploadable>) - Method in class net.imagej.updater.AbstractUploader
 
calculateTotalSize(List<Uploadable>) - Method in interface net.imagej.updater.Uploader
TODO
CalibratedAxis - Interface in net.imagej.axis
An axis with an associated AxisType, unit and calibration.
CalibratedRealInterval<A extends CalibratedAxis> - Interface in net.imagej.interval
A CalibratedRealInterval marries a TypedRealInterval with a CalibratedSpace.
CalibratedSpace<A extends CalibratedAxis> - Interface in net.imagej.space
A Euclidean space whose dimensions have units and calibrations.
calibratedValue(double) - Method in interface net.imagej.axis.CalibratedAxis
Returns a calibrated value given a raw position along the axis.
calibratedValue(double) - Method in class net.imagej.axis.ChapmanRichardsAxis
 
calibratedValue(double) - Method in class net.imagej.axis.DefaultLinearAxis
 
calibratedValue(double) - Method in class net.imagej.axis.EnumeratedAxis
 
calibratedValue(double) - Method in class net.imagej.axis.ExponentialAxis
 
calibratedValue(double) - Method in class net.imagej.axis.ExponentialRecoveryAxis
 
calibratedValue(double) - Method in class net.imagej.axis.GammaVariateAxis
 
calibratedValue(double) - Method in class net.imagej.axis.GaussianAxis
 
calibratedValue(double) - Method in class net.imagej.axis.IdentityAxis
 
calibratedValue(double) - Method in class net.imagej.axis.InverseRodbardAxis
 
calibratedValue(double) - Method in class net.imagej.axis.LogLinearAxis
 
calibratedValue(double) - Method in class net.imagej.axis.PolynomialAxis
 
calibratedValue(double) - Method in class net.imagej.axis.PowerAxis
 
calibratedValue(double) - Method in class net.imagej.axis.RodbardAxis
 
Calibrator - Interface in net.imagej.units
Calibrators map values bidirectionally.
cancel(String) - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness
Cancels the command execution, with the given reason for doing so.
cancel(String) - Method in class net.imagej.ops.thread.chunker.AbstractChunker
Cancels the command execution, with the given reason for doing so.
cancel() - Method in class net.imagej.plugins.commands.assign.MathCommand
 
cancel(String) - Method in class net.imagej.plugins.commands.debug.PointSetDemo
 
cancel() - Method in class net.imagej.plugins.commands.display.ChannelsTool
 
cancel() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
cancel - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
cancel() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
cancel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
cancel() - Method in class net.imagej.updater.util.Downloader
 
cancelled - Variable in class net.imagej.updater.util.Downloader
 
canConvert(Object, Type) - Method in class net.imagej.convert.ConvertListToFinalInterval
 
canConvert(Object, Class<?>) - Method in class net.imagej.convert.ConvertListToFinalInterval
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.convert.ConvertListToFinalInterval
 
canConvert(Class<?>, Type) - Method in class net.imagej.convert.ConvertListToFinalInterval
Deprecated.
canConvert(Object, Type) - Method in class net.imagej.convert.DatasetToImgConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.convert.DatasetToImgConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.AbstractLegacyConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
 
canConvert(ConversionRequest) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
 
canConvert(ConversionRequest) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable
 
canConvert(ConversionRequest) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
canConvert(Object, Type) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
canConvert(Object, Type) - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
 
canConvert(Object, Type) - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
 
canConvert(Object, Type) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
 
canConvert(ConversionRequest) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
 
canConvert(Object, Type) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
 
canConvert(Object, Type) - Method in class net.imagej.omero.roi.AbstractTreeNodeToROIData
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.AbstractTreeNodeToROIData
 
canConvert(ConversionRequest) - Method in class net.imagej.omero.roi.mask.RAIToMaskData
 
canConvert(Object, Type) - Method in class net.imagej.omero.roi.mask.RAIToMaskData
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.mask.RAIToMaskData
 
canConvert(Object, Type) - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
 
canConvert(ConversionRequest) - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
 
canConvert(Object, Type) - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
 
canConvert(ConversionRequest) - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
 
canConvert(Object, Type) - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
 
canConvert(Object, Type) - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
 
canConvert(Object, Class<?>) - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
 
canConvert(Class<?>, Type) - Method in class net.imagej.roi.AbstractMaskToRAConverter
Deprecated.
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractMaskToRAConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
 
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRAToMaskConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRAToMaskConverter
 
canConvert(Class<?>, Type) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
Deprecated.
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
 
canConvert(Object, Type) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
 
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
 
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
 
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
 
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
 
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
 
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
 
canConvert(Object, Type) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
 
canConvert(Object, Class<?>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
 
candidates(OpEnvironment, String, Class<? extends Op>, int, SpecialOp.Flavor) - Static method in interface net.imagej.ops.special.SpecialOp
 
canDisplay(Class<?>) - Method in class net.imagej.display.DefaultImageDisplay
 
canExecute(File) - Static method in class net.imagej.updater.util.UpdaterUtil
 
canOpen(String) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#canOpen instead.
canOpen(String) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#canOpen instead.
canProvide(ModuleItem<?>) - Method in class net.imagej.batch.input.DatasetBatchInputProvider
 
canSave(String) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#canSave instead.
canSave(String) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#canSave instead.
canUpload - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
CanvasEvent - Class in net.imagej.display.event
An event indicating something has happened to an ImageCanvas.
CanvasEvent(ImageCanvas) - Constructor for class net.imagej.display.event.CanvasEvent
 
canView(Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer
 
canView(Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
 
canView(Display<?>) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
canWrite(File) - Static method in class net.imagej.updater.UpToDate
 
capitalize(String) - Static method in class net.imagej.util.MediaWikiClient
 
capture() - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
 
capture() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
capture() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
Captures the current view of data displayed in the canvas, including all JHotDraw embellishments.
capture() - Method in interface net.imagej.ui.viewer.image.ImageDisplayViewer
 
CaptureImage - Class in net.imagej.plugins.commands.display
Captures the current view of an ImageDisplay to a Dataset.
CaptureImage() - Constructor for class net.imagej.plugins.commands.display.CaptureImage
 
captureScreen() - Method in class net.imagej.display.DummyScreenCaptureService
No-op implementation.
captureScreen() - Method in interface net.imagej.display.ScreenCaptureService
 
CaptureScreen - Class in net.imagej.plugins.commands.display
Captures the entire screen to a Dataset.
CaptureScreen() - Constructor for class net.imagej.plugins.commands.display.CaptureScreen
 
captureScreen() - Method in class net.imagej.ui.awt.AWTScreenCaptureService
Captures the entire screen and returns the result in a Dataset.
captureScreenRegion(int, int, int, int) - Method in class net.imagej.display.DummyScreenCaptureService
No-op implementation.
captureScreenRegion(int, int, int, int) - Method in interface net.imagej.display.ScreenCaptureService
 
captureScreenRegion(int, int, int, int) - Method in class net.imagej.ui.awt.AWTScreenCaptureService
Captures a rectangular region of the screen and returns the result in a Dataset.
cast(T, BigComplex) - Method in interface net.imagej.types.DataType
Sets a BigComplex representation from a given variable of the underlying NumericType.
cast(BigComplex, T) - Method in interface net.imagej.types.DataType
Sets a given variable of the underlying NumericType to a value that is closest to a given BigComplex number.
cast(ComplexDoubleType, BigComplex) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
cast(BigComplex, ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
cast(Unsigned12BitType, BigComplex) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
cast(BigComplex, Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
cast(ShortType, BigComplex) - Method in class net.imagej.types.DataType16BitSignedInteger
 
cast(BigComplex, ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
 
cast(UnsignedShortType, BigComplex) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
cast(BigComplex, UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
cast(BitType, BigComplex) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
cast(BigComplex, BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
cast(FloatType, BigComplex) - Method in class net.imagej.types.DataType32BitSignedFloat
 
cast(BigComplex, FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
 
cast(IntType, BigComplex) - Method in class net.imagej.types.DataType32BitSignedInteger
 
cast(BigComplex, IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
 
cast(UnsignedIntType, BigComplex) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
cast(BigComplex, UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
cast(ComplexFloatType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
cast(BigComplex, ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
cast(DoubleType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedFloat
 
cast(BigComplex, DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
 
cast(LongType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedInteger
 
cast(BigComplex, LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
 
cast(ByteType, BigComplex) - Method in class net.imagej.types.DataType8BitSignedInteger
 
cast(BigComplex, ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
 
cast(UnsignedByteType, BigComplex) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
cast(BigComplex, UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
cast(NativeBoolType, BigComplex) - Method in class net.imagej.types.DataTypeBoolean
 
cast(BigComplex, NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
 
cast(DataType<U>, U, DataType<V>, V) - Method in interface net.imagej.types.DataTypeService
Fills an output with a cast from an input given information about their DataTypes.
cast(DataType<U>, U, DataType<V>, V, BigComplex) - Method in interface net.imagej.types.DataTypeService
Fills an output with a cast from an input given information about their DataTypes.
cast(BigComplex, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
cast(PreciseFixedFloatType, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
cast(BigComplex, PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
cast(UnboundedIntegerType, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
cast(BigComplex, UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
cast(DataType<U>, U, DataType<V>, V) - Method in class net.imagej.types.DefaultDataTypeService
 
cast(DataType<U>, U, DataType<V>, V, BigComplex) - Method in class net.imagej.types.DefaultDataTypeService
 
cca(ImgLabeling<L, I>, RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement, Iterator<L>) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
cca(ImgLabeling<L, I>, RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
cca(RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
ceil(double) - Method in class net.imagej.ops.math.MathNamespace
 
ceil(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Ceil() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Ceil
 
center() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
 
center() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
center(Mesh) - Static method in class net.imagej.mesh.Meshes
Finds the center of a mesh using vertices.
center() - Method in class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse
 
center() - Method in class net.imagej.omero.roi.rectangle.AbstractOMERORectangle
 
CenterAwareComputerOp<I,O> - Interface in net.imagej.ops.map.neighborhood
A center aware computer calculates a result from a given input and its surrounding neighborhood, storing it into the specified output reference.
CenterAwareIntegralComputerOp<I,O> - Interface in net.imagej.ops.map.neighborhood
A center-aware computer calculates a result from a given input and the surrounding rectangular neighborhood in (multiple) integral images.
centerDialog(boolean) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
centerDialog(boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
centerOfGravity(IterableInterval<T>) - Method in class net.imagej.ops.geom.GeomNamespace
 
centralMoment00(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment00(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment01(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment01(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment02(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment02(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment03(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment03(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment10(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment10(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment11(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment11(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment12(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment12(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment20(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment20(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment21(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment21(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment30(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment30(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centroid(LabelRegion<?>) - Method in class net.imagej.ops.geom.GeomNamespace
 
centroid(IterableInterval<?>) - Method in class net.imagej.ops.geom.GeomNamespace
 
centroid(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
centroid(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
CentroidII - Class in net.imagej.ops.geom
This Op computes the centroid of a IterableRegion (Label).
CentroidII() - Constructor for class net.imagej.ops.geom.CentroidII
 
CentroidLabelRegion - Class in net.imagej.ops.geom
This Op computes the centroid of a IterableRegion (Label).
CentroidLabelRegion() - Constructor for class net.imagej.ops.geom.CentroidLabelRegion
 
CentroidMesh - Class in net.imagej.ops.geom
Generic implementation of geom.centroid.
CentroidMesh() - Constructor for class net.imagej.ops.geom.CentroidMesh
 
CentroidPolygon - Class in net.imagej.ops.geom
Generic implementation of geom.centroid.
CentroidPolygon() - Constructor for class net.imagej.ops.geom.CentroidPolygon
 
Cfloat32() - Constructor for class net.imagej.ops.convert.ConvertImages.Cfloat32
 
cfloat32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat32(Img<ComplexFloatType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat32(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat32(ComplexFloatType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
Cfloat64() - Constructor for class net.imagej.ops.convert.ConvertImages.Cfloat64
 
cfloat64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat64(Img<ComplexDoubleType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat64(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat64(ComplexDoubleType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
chanClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
changeInput() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets whether to change input data to contain the output mask.
changePixels() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
changes() - Method in class net.imagej.updater.FilesCollection
 
changeUploadPassword(String) - Method in class net.imagej.util.MediaWikiClient
 
CHANNEL - Static variable in class net.imagej.axis.Axes
Identifies the Channel dimensional type, representing a generic channel dimension.
ChannelCollection - Class in net.imagej
A ChannelCollection maintains a list of data values.
ChannelCollection() - Constructor for class net.imagej.ChannelCollection
Constructs a new empty channel collection.
ChannelCollection(List<Double>) - Constructor for class net.imagej.ChannelCollection
Constructs a new channel collection from a list of Double values.
ChannelCollection(ColorRGB) - Constructor for class net.imagej.ChannelCollection
Constructs a ChannelCollection containing the three RGB values of a given color.
channels(RandomAccessibleInterval<T>) - Static method in class net.imagej.notebook.chart.Charts
 
ChannelsTool - Class in net.imagej.plugins.commands.display
Plugin that allows toggling between different color modes.
ChannelsTool() - Constructor for class net.imagej.plugins.commands.display.ChannelsTool
 
ChapmanRichardsAxis - Class in net.imagej.axis
Implement an axis that uses Chapman and Richards method of scaling.
ChapmanRichardsAxis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.ChapmanRichardsAxis
 
characters(char[], int, int) - Method in class net.imagej.updater.POMParser
 
characters(char[], int, int) - Method in class net.imagej.updater.XMLFileReader
 
Charts - Class in net.imagej.notebook.chart
Utility methods for calculating histograms and plotting charts.
Charts() - Constructor for class net.imagej.notebook.chart.Charts
 
check(TreeNode<?>) - Method in class net.imagej.omero.roi.TreeNodeMaskPredicateToROIData
 
check(TreeNode<?>) - Method in class net.imagej.omero.roi.TreeNodeRAIToROIData
 
check() - Method in class net.imagej.server.health.ImageJServerHealthCheck
 
check() - Static method in class net.imagej.updater.UpToDate
Check the update status of the current ImageJ installation.
check(File) - Static method in class net.imagej.updater.UpToDate
Check the update status of a given ImageJ installation.
checkboxes - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
checkboxes - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
checkboxIndex - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
checkboxIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
checkConsistency() - Method in class net.imagej.updater.FilesCollection
 
Checker() - Constructor for class net.imagej.omero.OMEROFormat.Checker
 
checkForUpdates - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
CheckForUpdates - Class in net.imagej.updater
This plugin checks whether updates are available, and prompts the user to launch the updater if so.
CheckForUpdates() - Constructor for class net.imagej.updater.CheckForUpdates
 
checkHTTPSSupport(LogService) - Static method in class net.imagej.updater.util.HTTPSUtil
Calls HTTPSUtil.secureURL to check whether the HTTPS certificate can be handled by the JVM.
checkIfCanceled() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
checkInput() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
checkInput() - Method in interface net.imagej.minmax.MinMaxMethod
Verifies method inputs
checkInput(I, O) - Method in class net.imagej.ops.convert.clip.ClipRealTypes
 
checkInput(I, O) - Method in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
 
checkInput(IterableInterval<I>) - Method in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
 
checkInput(I, O) - Method in class net.imagej.ops.convert.RealTypeConverter
Allows the convert pix operation to determine some parameters from the concrete input and output types.
checkInput(IterableInterval<I>) - Method in class net.imagej.ops.convert.RealTypeConverter
If the pixels to be converted stem from an IterableInterval some additionally needed parameters (e.g.
checkInput(I, O) - Method in class net.imagej.ops.convert.scale.ScaleRealTypes
 
checkInput() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm
 
checkInput() - Method in class net.imagej.plugins.commands.rotate.XYFlipper
Makes sure input is okay and creates output image
checksum - Variable in class net.imagej.updater.Checksummer.StringAndFile
 
checksum - Variable in class net.imagej.updater.FileObject.Version
 
Checksummer - Class in net.imagej.updater
A class to checksum and timestamp all the files shown in the Updater's UI.
Checksummer(FilesCollection, Progress) - Constructor for class net.imagej.updater.Checksummer
 
Checksummer.StringAndFile - Class in net.imagej.updater
 
checkWritable() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
children() - Method in class net.imagej.omero.roi.DefaultOMEROROICollection
 
children() - Method in class net.imagej.omero.roi.DefaultOMEROROIElement
 
children() - Method in class net.imagej.omero.roi.LazyROITree
 
children() - Method in class net.imagej.roi.DefaultROITree
 
choiceIndex - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
choiceIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
choiceIndices - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
choiceIndices - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
choices - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
choices - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
chooseFile(String, File, String) - Method in class net.imagej.legacy.ui.LegacyUI
 
chooseFiles(File, File[], FileFilter, String) - Method in class net.imagej.legacy.ui.LegacyUI
 
chooseLabel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
chooseUpdateSite(FilesCollection, FileObject) - Method in class net.imagej.ui.swing.updater.FileTable
 
chooseUploadSite(String) - Method in class net.imagej.updater.CommandLine
 
Chunk - Interface in net.imagej.ops.thread.chunker
A Chunk of code which can be executed by a ChunkerOp.
chunkable - Variable in class net.imagej.ops.thread.chunker.AbstractChunker
Chunk to be executed
chunker(Chunk, long) - Method in class net.imagej.ops.thread.ThreadNamespace
Executes the "chunker" operation on the given arguments.
ChunkerInterleaved - Class in net.imagej.ops.thread.chunker
Implementation of a ChunkerOp that interleaves the chunks.
ChunkerInterleaved() - Constructor for class net.imagej.ops.thread.chunker.ChunkerInterleaved
 
ChunkerOp - Interface in net.imagej.ops.thread.chunker
A "chunker" operation which executes code across chunks of data using multiple threads.
cInfo() - Method in class net.imagej.ops.OpCandidate
Gets the CommandInfo metadata describing the op to match against.
cInfo() - Method in class net.imagej.ops.OpInfo
Gets the associated CommandInfo metadata.
circularity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
circularity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
Class2JarFilesMap - Class in net.imagej.updater.util
Maps class names to the .jar files containing them.
Class2JarFilesMap(File) - Constructor for class net.imagej.updater.util.Class2JarFilesMap
 
ClassLauncher - Class in imagej
Deprecated.
ClassLauncher() - Constructor for class imagej.ClassLauncher
Deprecated.
 
ClassLauncher - Class in net.imagej.launcher
This class is the central entry point into Java from the ImageJ launcher.
ClassLauncher() - Constructor for class net.imagej.launcher.ClassLauncher
 
ClassLoaderPlus - Class in net.imagej.launcher
A classloader whose classpath can be augmented after instantiation.
ClassLoaderPlus() - Constructor for class net.imagej.launcher.ClassLoaderPlus
 
ClassLoaderPlus(URL...) - Constructor for class net.imagej.launcher.ClassLoaderPlus
 
ClassLoaderPlus.FatJarFileComparator - Class in net.imagej.launcher
Comparator to ensure that problematic fat JARs are sorted last.
cleanFaceInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
clear() - Method in class net.imagej.display.DefaultWindowService
 
clear() - Method in interface net.imagej.display.WindowService
Clears the list of window files.
clear() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
clear() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
clear() - Method in class net.imagej.legacy.convert.TableListWrapper
 
clear(Class<?>) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
clear(String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
clear(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
clear() - Method in class net.imagej.omero.LazyTableList
 
clear() - Method in class net.imagej.omero.legacy.LazyOverlay
 
clear(Dataset) - Method in interface net.imagej.roi.ROIService
Clears all MaskPredicates associated with the given Dataset
clear(Dataset) - Method in interface net.imagej.table.TableService
Clears any Tables associated with the given Dataset.
clearAll() - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
clearCustomOptions() - Method in class net.imagej.ui.swing.updater.ViewOptions
 
clearDiff() - Method in class net.imagej.ui.swing.updater.DiffFile
Remove the previous diff output from the DiffView.
clearFacesInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
clearROIMappings() - Method in class net.imagej.omero.DefaultOMEROService
 
clearROIMappings() - Method in interface net.imagej.omero.OMEROService
Removes all Object ROIData mappings.
client - Static variable in class net.imagej.plugins.uploaders.webdav.WebDAVUploader
 
clip(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace
 
ClipRealTypes<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.convert.clip
Copies the value of one RealType to another, and clips values which are outside of the output types range.
ClipRealTypes() - Constructor for class net.imagej.ops.convert.clip.ClipRealTypes
 
clone() - Method in class net.imagej.ui.swing.overlay.PointFigure
 
clone(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection
 
clone() - Method in class net.imagej.updater.UpdateSite
 
close() - Method in class net.imagej.omero.DefaultOMEROSession
 
close() - Method in class net.imagej.omero.OMEROFormat.Reader
 
close() - Method in class net.imagej.omero.OMEROFormat.Writer
 
close() - Method in interface net.imagej.omero.OMEROSession
 
close(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
close(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
close() - Method in class net.imagej.tensorflow.CachedModelBundle
 
close - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
close() - Method in class net.imagej.updater.DllFile
Closes the underlying RandomAccessFile.
CloseBinaryImage - Class in net.imagej.plugins.commands.binary
Does a morphological close operation on a binary image.
CloseBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.CloseBinaryImage
 
CLOSED_BOUNDARY_TEXT - Static variable in class net.imagej.omero.roi.ROIConverters
String identifiers for boundary imagej boundary behaviors
closedBox(double[], double[]) - Method in interface net.imagej.roi.ROIService
Creates a WritableBox with closed boundary behavior.
closedEllipsoid(double[], double[]) - Method in interface net.imagej.roi.ROIService
Creates an WritableEllipsoid with closed boundary behavior.
ClosedOMEROEllipse - Class in net.imagej.omero.roi.ellipse
An OMEROEllipse with closed boundary behavior.
ClosedOMEROEllipse(EllipseData) - Constructor for class net.imagej.omero.roi.ellipse.ClosedOMEROEllipse
 
ClosedOMEROPolygon - Class in net.imagej.omero.roi.polyshape
An OMEROPolygon with closed boundary behavior.
ClosedOMEROPolygon(PolygonData) - Constructor for class net.imagej.omero.roi.polyshape.ClosedOMEROPolygon
 
ClosedOMERORectangle - Class in net.imagej.omero.roi.rectangle
An OMERORectangle with closed boundary behavior.
ClosedOMERORectangle(RectangleData) - Constructor for class net.imagej.omero.roi.rectangle.ClosedOMERORectangle
 
closedPolygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService
Creates a WritablePolygon2D with closed boundary behavior.
closedPolygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService
Creates a WritablePolygon2D with closed boundary behavior.
closedSphere(double[], double) - Method in interface net.imagej.roi.ROIService
Creates a WritableSphere with closed boundary behavior.
closedSuperEllipsoid(double[], double[], double) - Method in interface net.imagej.roi.ROIService
Creates a WritableSuperEllipsoid with closed boundary behavior.
clusterPromenence(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
clusterPromenence(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
clusterShade(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
clusterShade(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
coarseness(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
coarseness(O, RandomAccessibleInterval<I>) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
coeff(int) - Method in class net.imagej.axis.PolynomialAxis
Gets the ith coefficient of the polynomial.
collapseNumericView(RandomAccessible<N>, int) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseNumericView(RandomAccessibleInterval<N>) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseRealView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends RealType <T>> into an (n-1)-dimensional RandomAccessibleInterval<RealComposite<T>>
collapseRealView(RandomAccessible<R>, int) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends RealType <T>> into an (n-1)-dimensional RandomAccessible <RealComposite<T>>
collapseView(RandomAccessible<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessible<T> into an ( n -1)-dimensional RandomAccessible< GenericComposite <T>>
collapseView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T> into an ( n -1)-dimensional RandomAccessibleInterval< GenericComposite<T>>
coloc() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "coloc" namespace.
Colocalize<T extends RealType<T>> - Class in net.imagej.ops.commands.coloc
 
Colocalize() - Constructor for class net.imagej.ops.commands.coloc.Colocalize
 
ColocNamespace - Class in net.imagej.ops.coloc
The coloc namespace contains ops that facilitate colocalization analysis.
ColocNamespace() - Constructor for class net.imagej.ops.coloc.ColocNamespace
 
ColocUtil - Class in net.imagej.ops.coloc
Utility class for coloc ops.
colon(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
COLOR - Static variable in class net.imagej.plugins.commands.display.ChannelsTool
 
ColorMode - Enum in net.imagej.display
The mode to use to display data in a view.
colorOptions(ColorRGB, ColorRGB) - Method in class net.imagej.legacy.OptionsSynchronizer
 
ColorTableHarmonizer - Class in net.imagej.legacy.translate
This class synchronizes ImageDisplay ColorTables with ImagePlus LUTs.
ColorTableHarmonizer(ImageDisplayService) - Constructor for class net.imagej.legacy.translate.ColorTableHarmonizer
 
ColorTableRemapper - Class in net.imagej.plugins.commands.restructure
Class responsible for simple remapping of color tables from one indexing scheme to another.
ColorTableRemapper(ColorTableRemapper.RemapAlgorithm) - Constructor for class net.imagej.plugins.commands.restructure.ColorTableRemapper
 
ColorTableRemapper.RemapAlgorithm - Interface in net.imagej.plugins.commands.restructure
 
ColorTables - Class in net.imagej.display
Built-in lookup tables.
ColorTableWidget<U> - Interface in net.imagej.widget
Widget interface for color tables.
CombinedCalibratedRealInterval<A extends CalibratedAxis,S extends CalibratedRealInterval<A>> - Class in net.imagej.interval
A CombinedRealInterval that has calibrated axes.
CombinedCalibratedRealInterval() - Constructor for class net.imagej.interval.CombinedCalibratedRealInterval
 
CombinedRealInterval<A extends TypedAxis,S extends TypedRealInterval<A>> - Class in net.imagej.interval
A CombinedRealInterval is a RealInterval (specifically a TypedRealInterval) which is a union of other TypedRealIntervals.
CombinedRealInterval() - Constructor for class net.imagej.interval.CombinedRealInterval
 
CombinedRealInterval.MinMax - Class in net.imagej.interval
 
CombinedSpace<A extends TypedAxis,S extends TypedSpace<A>> - Class in net.imagej.space
A CombinedSpace is a EuclideanSpace (specifically a TypedSpace) which is a union of other TypedSpaces.
CombinedSpace() - Constructor for class net.imagej.space.CombinedSpace
 
CommandLine - Class in net.imagej.updater
This is the command-line interface into the ImageJ Updater.
CommandLine() - Constructor for class net.imagej.updater.CommandLine
Deprecated.
CommandLine(File, int) - Constructor for class net.imagej.updater.CommandLine
 
CommandLine(File, int, Progress) - Constructor for class net.imagej.updater.CommandLine
 
CommandLine.ConsoleAuthenticator - Class in net.imagej.updater
 
CommandLine.ConsoleUserInterface - Class in net.imagej.updater
 
CommandLine.FileFilter - Class in net.imagej.updater
 
commandService - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
commandsName() - Method in class net.imagej.legacy.IJ1Helper
 
compactness(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
compactness(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
ComparableGreaterThan() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThan
 
ComparableGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThanOrEqual
 
ComparableLessThan() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThan
 
ComparableLessThanOrEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThanOrEqual
 
compare(String, String) - Method in class imagej.patcher.LegacyHooks.FatJarNameComparator
Deprecated.
 
compare(File, File) - Method in class net.imagej.launcher.ClassLoaderPlus.FatJarFileComparator
 
compare(int, int) - Method in interface net.imagej.ops.coloc.IntComparator
 
compare(String, String) - Method in class net.imagej.patcher.LegacyHooks.FatJarNameComparator
 
compareTo(Data) - Method in class net.imagej.AbstractData
 
compareTo(AxisType) - Method in class net.imagej.axis.DefaultAxisType
 
compareTo(OpInfo) - Method in class net.imagej.ops.OpInfo
 
compareTo(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
compareTo(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
compareTo(FileObject.Version) - Method in class net.imagej.updater.FileObject.Version
 
compareTo(UpdateSite) - Method in class net.imagej.updater.UpdateSite
 
compatible(IterableInterval<I>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(RandomAccessibleInterval<I>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I1>, IterableInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(RandomAccessibleInterval<I1>, IterableInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I1>, RandomAccessibleInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(RandomAccessibleInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(RandomAccessibleInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
complement(Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
complement(int) - Method in class net.imagej.ops.math.MathNamespace
 
complement(long) - Method in class net.imagej.ops.math.MathNamespace
 
completeMetadataFrom(FileObject) - Method in class net.imagej.updater.FileObject
Fill unset metadata with metadata from another object
complex(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
 
complex(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService
Given an ImgPlus of unknown type this returns a typed ImgPlus of type ComplexType.
complexConjugate() - Method in class net.imagej.types.BigComplex
Does complex conjugation on self.
complexConjugate() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
complexConjugate() - Method in class net.imagej.types.PreciseFixedFloatType
 
complexConjugate() - Method in class net.imagej.types.UnboundedIntegerType
 
complexConjugateMultiply(IterableInterval<O>, IterableInterval<I>, IterableInterval<I>) - Method in class net.imagej.ops.math.MathNamespace
 
complexConjugateMultiply(C, C, C) - Method in class net.imagej.ops.math.MathNamespace
 
ComplexConjugateMultiplyMap<T extends ComplexType<T>> - Class in net.imagej.ops.math.multiply
 
ComplexConjugateMultiplyMap() - Constructor for class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
 
ComplexConjugateMultiplyOp<T extends ComplexType<T>> - Class in net.imagej.ops.math.multiply
 
ComplexConjugateMultiplyOp() - Constructor for class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
 
complexMerge(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.Horizon
Merges another facet to this facet.
ComplexToBit() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToBit
 
ComplexToCfloat32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat32
 
ComplexToCfloat64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat64
 
ComplexToFloat32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToFloat32
 
ComplexToFloat64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToFloat64
 
ComplexToInt16() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt16
 
ComplexToInt32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt32
 
ComplexToInt64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt64
 
ComplexToInt8() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt8
 
ComplexToUint12() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint12
 
ComplexToUint128() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint128
 
ComplexToUint16() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint16
 
ComplexToUint2() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint2
 
ComplexToUint32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint32
 
ComplexToUint4() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint4
 
ComplexToUint64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint64
 
ComplexToUint8() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint8
 
componentHidden(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
componentMoved(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
componentResized(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
componentShown(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
COMPOSITE - Static variable in class net.imagej.plugins.commands.display.ChannelsTool
 
CompositeHarmonizer - Class in net.imagej.legacy.translate
This class sets composite channel count for Datasets to match a given ImagePlus.
CompositeHarmonizer() - Constructor for class net.imagej.legacy.translate.CompositeHarmonizer
 
CompositeOverlay - Class in net.imagej.overlay
A composite of one or more overlays.
CompositeOverlay() - Constructor for class net.imagej.overlay.CompositeOverlay
 
CompositeOverlay(Context) - Constructor for class net.imagej.overlay.CompositeOverlay
 
CompositeOverlay(Context, int) - Constructor for class net.imagej.overlay.CompositeOverlay
 
CompositeOverlay.Operation - Enum in net.imagej.overlay
 
compute(int, long, long, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, PValueResult) - Method in class net.imagej.ops.coloc.pValue.DefaultPValue
 
compute(I, O) - Method in class net.imagej.ops.convert.clip.ClipRealTypes
 
compute(C, BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToBit
 
compute(C, ComplexFloatType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat32
 
compute(C, ComplexDoubleType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat64
 
compute(C, FloatType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat32
 
compute(C, DoubleType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat64
 
compute(C, ShortType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt16
 
compute(C, IntType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt32
 
compute(C, LongType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt64
 
compute(C, ByteType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt8
 
compute(C, Unsigned12BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint12
 
compute(C, Unsigned128BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint128
 
compute(C, UnsignedShortType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint16
 
compute(C, Unsigned2BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint2
 
compute(C, UnsignedIntType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint32
 
compute(C, Unsigned4BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint4
 
compute(C, UnsignedLongType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint64
 
compute(C, UnsignedByteType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint8
 
compute(T, BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToBit
 
compute(T, ShortType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt16
 
compute(T, IntType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt32
 
compute(T, LongType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt64
 
compute(T, ByteType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt8
 
compute(T, Unsigned12BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint12
 
compute(T, Unsigned128BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint128
 
compute(T, UnsignedShortType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint16
 
compute(T, Unsigned2BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint2
 
compute(T, UnsignedIntType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint32
 
compute(T, Unsigned4BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint4
 
compute(T, UnsignedLongType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint64
 
compute(T, UnsignedByteType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint8
 
compute(I, O) - Method in class net.imagej.ops.convert.copy.CopyRealTypes
 
compute(IterableInterval<I>, IterableInterval<O>) - Method in class net.imagej.ops.convert.imageType.ConvertIIs
 
compute(I, O) - Method in class net.imagej.ops.convert.scale.ScaleRealTypes
 
compute(ArrayImg<T, A>, ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyArrayImg
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyII
 
compute(Img<T>, Img<T>) - Method in class net.imagej.ops.copy.CopyImg
 
compute(ImgLabeling<L, T>, ImgLabeling<L, T>) - Method in class net.imagej.ops.copy.CopyImgLabeling
 
compute(LabelingMapping<L>, LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyLabelingMapping
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyRAI
 
compute(T, T) - Method in class net.imagej.ops.copy.CopyType
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyC
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<O>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyCorrection
computes the correction factor of the Richardson Lucy Algorithm
compute(I, I) - Method in class net.imagej.ops.deconvolve.RichardsonLucyTVUpdate
performs update step of the Richardson Lucy with Total Variation Algorithm
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyUpdate
performs update step of the Richardson Lucy Algorithm
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultASM
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultClusterPromenence
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultClusterShade
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultContrast
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultCorrelation
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultDifferenceEntropy
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultDifferenceVariance
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultEntropy
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultICM1
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultICM2
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultIFDM
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultMaxProbability
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumAverage
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumEntropy
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumVariance
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultTextureHomogeneity
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultVariance
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
 
compute(RandomAccessibleInterval<I>, ArrayList<LongType>) - Method in class net.imagej.ops.features.lbp2d.DefaultLBP2D
 
compute(RandomAccessibleInterval<I>, O) - Method in class net.imagej.ops.features.tamura2d.DefaultCoarsenessFeature
 
compute(RandomAccessibleInterval<I>, O) - Method in class net.imagej.ops.features.tamura2d.DefaultContrastFeature
 
compute(RandomAccessibleInterval<I>, O) - Method in class net.imagej.ops.features.tamura2d.DefaultDirectionalityFeature
 
compute(IterableInterval<T>, O) - Method in class net.imagej.ops.features.zernike.DefaultMagnitudeFeature
 
compute(IterableInterval<T>, O) - Method in class net.imagej.ops.features.zernike.DefaultPhaseFeature
 
compute(RandomAccessibleInterval<I>, IterableInterval<O>) - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
 
compute(RandomAccessibleInterval<I>, IterableInterval<O>) - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
create FFT memory, create FFT filter and run it
compute(I, O) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealType
 
compute(T, T) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
 
compute(I, O) - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.bilateral.DefaultBilateral
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.convolve.ConvolveFFTC
Call the linear filter that is set up to perform convolution
compute(RandomAccessible<I>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveC
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.correlate.CorrelateFFTC
Call the linear filter that is set up to perform correlation
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.derivative.PartialDerivativeRAI
 
compute(RandomAccessibleInterval<T>, int[], RandomAccessibleInterval<DoubleType>) - Method in class net.imagej.ops.filter.derivativeGauss.DefaultDerivativeGauss
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DefaultDoG
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DoGSingleSigmas
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.fft.FFTMethodsOpC
Computes an ND FFT using FFTMethods
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.FFTMethodsLinearFFTFilterC
Perform convolution by multiplying the FFTs in the frequency domain
compute(RandomAccessible<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.DefaultGaussRA
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.DefaultGaussRAI
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.GaussRAISingleSigma
 
compute(RandomAccessibleInterval<C>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpC
Compute an ND inverse FFT
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.sobel.SobelRAI
 
compute(RandomAccessibleInterval<T>, IterableInterval<DoubleType>) - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Method in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractBoxivity
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractConvexity
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractSizeConvexHull
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractSolidity
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultCircularity
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultEccentricity
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultElongation
 
compute(Pair<RealLocalizable, RealLocalizable>, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsAngle
 
compute(Pair<RealLocalizable, RealLocalizable>, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameter
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMajorAxis
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinorAxis
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultPerimeterLength
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultRoundness
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultSizePolygon
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon
 
compute(Polygon2D, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountPolygon
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultCompactness
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSphericity
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSurfaceArea
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountMesh
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
 
compute(UnaryFunctionOp<long[], N>, IterableInterval<T>) - Method in class net.imagej.ops.image.equation.DefaultCoordinatesEquation
 
compute(String, IterableInterval<T>) - Method in class net.imagej.ops.image.equation.DefaultEquation
 
compute(DoubleBinaryOperator, IterableInterval<T>) - Method in class net.imagej.ops.image.equation.DefaultXYEquation
 
compute(Iterable<T>) - Method in class net.imagej.ops.image.fill.DefaultFill
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<RealType<?>>) - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.invert.InvertII
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.invert.InvertIIInteger
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIComputer
 
compute(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>) - Method in class net.imagej.ops.image.watershed.Watershed
 
compute(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>) - Method in class net.imagej.ops.image.watershed.WatershedBinary
 
compute(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>) - Method in class net.imagej.ops.image.watershed.WatershedBinarySingleSigma
 
compute(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>) - Method in class net.imagej.ops.image.watershed.WatershedSeeded
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment00
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment01
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment02
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment03
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment10
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment11
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment12
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment20
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment21
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment30
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment00
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment11
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment1
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment2
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment3
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment4
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment5
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment6
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment7
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment00
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment01
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment10
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment11
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment02
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment03
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment11
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment12
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment20
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment21
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment30
 
compute(A, C) - Method in interface net.imagej.ops.join.Join2Computers
 
compute(A, BO) - Method in interface net.imagej.ops.join.JoinComputerAndInplace
 
compute(AO, B) - Method in interface net.imagej.ops.join.JoinInplaceAndComputer
 
compute(A, A) - Method in interface net.imagej.ops.join.JoinNComputers
 
compute(RandomAccessibleInterval<T>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.cca.DefaultCCA
 
compute(ImgLabeling<L, I>, ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.MergeLabeling
 
compute(Vector3d, Quaterniondc, Vector3d) - Method in class net.imagej.ops.linalg.rotate.Rotate3d
 
compute(Vector3f, Quaternionfc, Vector3f) - Method in class net.imagej.ops.linalg.rotate.Rotate3f
 
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And
 
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThan
 
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThanOrEqual
 
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThan
 
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThanOrEqual
 
compute(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Not
 
compute(Object, Object, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ObjectsEqual
 
compute(Object, Object, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ObjectsNotEqual
 
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or
 
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor
 
compute(I, O) - Method in class net.imagej.ops.logic.Default
 
compute(I, O) - Method in class net.imagej.ops.logic.If
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
 
compute(I, I) - Method in interface net.imagej.ops.loop.LoopComputer
 
compute(IterableInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToII
 
compute(IterableInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToIIParallel
 
compute(IterableInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAI
 
compute(IterableInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAIParallel
 
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToII
 
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToIIParallel
 
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAI
 
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAIParallel
 
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToII
 
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToIIParallel
 
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAI
 
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAIParallel
 
compute(RandomAccessibleInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToII
 
compute(RandomAccessibleInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToIIParallel
 
compute(Iterable<EI>, Iterable<EO>) - Method in class net.imagej.ops.map.MapIterableToIterable
 
compute(IterableInterval<O>) - Method in class net.imagej.ops.map.MapNullaryII
 
compute(Iterable<O>) - Method in class net.imagej.ops.map.MapNullaryIterable
 
compute(IterableInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToII
 
compute(IterableInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToIIParallel
 
compute(IterableInterval<EI>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAI
 
compute(IterableInterval<EI>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAIParallel
 
compute(RandomAccessibleInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToII
 
compute(RandomAccessibleInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToIIParallel
 
compute(RandomAccessibleInterval<I>, Shape, IterableInterval<O>) - Method in class net.imagej.ops.map.neighborhood.DefaultMapNeighborhood
 
compute(RandomAccessibleInterval<I>, Shape, IterableInterval<O>) - Method in class net.imagej.ops.map.neighborhood.MapNeighborhoodWithCenter
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Add
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.And
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Divide
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Multiply
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Or
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Subtract
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Xor
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Add
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Divide
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Multiply
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Subtract
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
 
compute(T, T, T) - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
 
compute(T) - Method in class net.imagej.ops.math.NullaryNumericTypeMath.Assign
 
compute(T) - Method in class net.imagej.ops.math.NullaryNumericTypeMath.Zero
 
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Abs
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccos
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccosh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccot
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccoth
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccsc
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccsch
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsec
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsech
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsin
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsinh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arctan
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arctanh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Ceil
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cos
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cosh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cot
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Coth
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Csc
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Csch
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.CubeRoot
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Exp
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.ExpMinusOne
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Floor
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.GammaConstant
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Invert
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log10
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log2
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.LogOnePlusX
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.MaxConstant
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.MinConstant
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.NearestInt
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Negate
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.PowerConstant
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Reciprocal
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Round
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sec
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sech
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Signum
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sin
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sinc
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.SincPi
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sinh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sqr
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sqrt
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Step
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Tan
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Tanh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Ulp
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.close.ListClose
 
compute(RandomAccessibleInterval<T>, Shape, IterableInterval<T>) - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.dilate.ListDilate
 
compute(RandomAccessibleInterval<T>, Shape, IterableInterval<T>) - Method in class net.imagej.ops.morphology.erode.DefaultErode
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.erode.ListErode
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesComputer
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.fillHoles.DefaultFillHoles
 
compute(RandomAccessibleInterval<T>, Localizable, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.floodFill.DefaultFloodFill
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.open.ListOpen
 
compute(RandomAccessibleInterval<B>, Boolean, RandomAccessibleInterval<BitType>) - Method in class net.imagej.ops.morphology.outline.Outline
Copies the outlines of the objects in the input interval into the output
compute(RandomAccessibleInterval<BitType>, RandomAccessibleInterval<BitType>) - Method in class net.imagej.ops.morphology.thin.AbstractThin
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.topHat.ListTopHat
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.slice.SliceRAI2RAI
 
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BCViaBC
 
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BHCFViaBC
 
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BHCFViaBHCF
 
compute(I, O) - Method in class net.imagej.ops.special.chain.UCViaUC
 
compute(I, O) - Method in class net.imagej.ops.special.chain.UHCFViaUC
 
compute(I, O) - Method in class net.imagej.ops.special.chain.UHCFViaUHCF
 
compute(I1, I2, O) - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
Computes the output given two inputs.
compute(I1, O) - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
 
compute(O) - Method in interface net.imagej.ops.special.computer.NullaryComputerOp
Computes the output value.
compute(I, O) - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
Computes the output given some input.
compute(O) - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultGeometricMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultHarmonicMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultKurtosis
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMedian
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMoment1AboutMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMoment2AboutMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMoment3AboutMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMoment4AboutMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultPercentile
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultQuantile
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSize
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSkewness
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultStandardDeviation
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSum
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSumOfInverses
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSumOfLogs
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSumOfSquares
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultVariance
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.stats.IISize
 
compute(RectangleNeighborhood<Composite<I>>, DoubleType) - Method in class net.imagej.ops.stats.IntegralMean
 
compute(RectangleNeighborhood<I>, DoubleType) - Method in class net.imagej.ops.stats.IntegralSum
 
compute(RectangleNeighborhood<Composite<I>>, DoubleType) - Method in class net.imagej.ops.stats.IntegralVariance
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableGeometricMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableHarmonicMean
 
compute(Iterable<T>, T) - Method in class net.imagej.ops.stats.IterableMax
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableMean
 
compute(Iterable<T>, T) - Method in class net.imagej.ops.stats.IterableMin
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableStandardDeviation
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableVariance
 
compute(I, O) - Method in class net.imagej.ops.threshold.AbstractApplyThresholdIterable
 
compute(Histogram1d<T>, T) - Method in class net.imagej.ops.threshold.AbstractComputeThresholdHistogram
 
compute(Iterable<T>, T, Iterable<BitType>) - Method in class net.imagej.ops.threshold.apply.ApplyConstantThreshold
 
compute(Comparable<? super T>, T, BitType) - Method in class net.imagej.ops.threshold.apply.ApplyThresholdComparable
 
compute(T, T, BitType) - Method in class net.imagej.ops.threshold.apply.ApplyThresholdComparator
 
compute(RandomAccessibleInterval<I>, IterableInterval<BitType>) - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral
 
compute(Iterable<T>, T, O) - Method in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
compute(RandomAccessibleInterval<B>, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
 
compute(RandomAccessibleInterval<B>, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
 
compute(RandomAccessibleInterval<B>, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
 
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.DefaultProjectParallel
 
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.ProjectRAIToII
 
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.ProjectRAIToIterableInterval
 
computeBin(Histogram1d<T>) - Method in interface net.imagej.ops.threshold.ComputeThresholdHistogram
Computes the bin number of the threshold cutoff within the histogram.
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.huang.ComputeHuangThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ij1.ComputeIJ1Threshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.intermodes.ComputeIntermodesThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.isoData.ComputeIsoDataThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.li.ComputeLiThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.maxEntropy.ComputeMaxEntropyThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.maxLikelihood.ComputeMaxLikelihoodThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.mean.ComputeMeanThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.minError.ComputeMinErrorThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.minimum.ComputeMinimumThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.moments.ComputeMomentsThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.otsu.ComputeOtsuThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.percentile.ComputePercentileThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.renyiEntropy.ComputeRenyiEntropyThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.rosin.ComputeRosinThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.shanbhag.ComputeShanbhagThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.triangle.ComputeTriangleThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.yen.ComputeYenThreshold
 
computeBinomialFactorial(int, int, int, double[][]) - Static method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
 
ComputeFFTMethodsSize - Class in net.imagej.ops.filter.fftSize
Op that calculates FFT sizes.
ComputeFFTMethodsSize() - Constructor for class net.imagej.ops.filter.fftSize.ComputeFFTMethodsSize
 
ComputeHuangThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.huang
Implements Huang's threshold method by Huang & Wang.
ComputeHuangThreshold() - Constructor for class net.imagej.ops.threshold.huang.ComputeHuangThreshold
 
ComputeIJ1Threshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.ij1
Implements the default threshold method from ImageJ 1.x.
ComputeIJ1Threshold() - Constructor for class net.imagej.ops.threshold.ij1.ComputeIJ1Threshold
 
ComputeIntermodesThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.intermodes
Implements an intermodes threshold method by Prewitt & Mendelsohn.
ComputeIntermodesThreshold() - Constructor for class net.imagej.ops.threshold.intermodes.ComputeIntermodesThreshold
 
ComputeIsoDataThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.isoData
Implements an IsoData (intermeans) threshold method by Ridler & Calvard.
ComputeIsoDataThreshold() - Constructor for class net.imagej.ops.threshold.isoData.ComputeIsoDataThreshold
 
ComputeLiThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.li
Implements Li's threshold method by Li & Lee, and Li & Tam, and Sezgin & Sankur.
ComputeLiThreshold() - Constructor for class net.imagej.ops.threshold.li.ComputeLiThreshold
 
ComputeMaxEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.maxEntropy
Implements Kapur-Sahoo-Wong (Maximum Entropy) thresholding method.
ComputeMaxEntropyThreshold() - Constructor for class net.imagej.ops.threshold.maxEntropy.ComputeMaxEntropyThreshold
 
ComputeMaxLikelihoodThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.maxLikelihood
Implements a maximum likelihood threshold method by Dempster, Laird, & Rubin and Glasbey.
ComputeMaxLikelihoodThreshold() - Constructor for class net.imagej.ops.threshold.maxLikelihood.ComputeMaxLikelihoodThreshold
 
ComputeMeanThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.mean
Implements a mean threshold method by Glasbey.
ComputeMeanThreshold() - Constructor for class net.imagej.ops.threshold.mean.ComputeMeanThreshold
 
ComputeMinErrorThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.minError
Implements a minimum error threshold method by Kittler & Illingworth and Glasbey.
ComputeMinErrorThreshold() - Constructor for class net.imagej.ops.threshold.minError.ComputeMinErrorThreshold
 
ComputeMinimumThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.minimum
Implements a minimum threshold method by Prewitt & Mendelsohn.
ComputeMinimumThreshold() - Constructor for class net.imagej.ops.threshold.minimum.ComputeMinimumThreshold
 
computeMinSize(Interval, List<Shape>) - Static method in class net.imagej.ops.morphology.Morphologies
Computes the min coordinate and the size of an Interval after padding with a list of Shapes in a series morphology operations.
ComputeMomentsThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.moments
Implements a moments based threshold method by Tsai.
ComputeMomentsThreshold() - Constructor for class net.imagej.ops.threshold.moments.ComputeMomentsThreshold
 
ComputeOtsuThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.otsu
Implements Otsu's threshold method.
ComputeOtsuThreshold() - Constructor for class net.imagej.ops.threshold.otsu.ComputeOtsuThreshold
 
ComputePercentileThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.percentile
Implements a percentile threshold method by Doyle.
ComputePercentileThreshold() - Constructor for class net.imagej.ops.threshold.percentile.ComputePercentileThreshold
 
computer(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
computer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
computer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<F>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
computer(OpEnvironment, Class<? extends Op>, I, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
ComputerConverter<A,B> - Class in net.imagej.ops.special.computer
A Converter backed by a UnaryComputerOp.
ComputerConverter(UnaryComputerOp<A, B>) - Constructor for class net.imagej.ops.special.computer.ComputerConverter
 
ComputeRenyiEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.renyiEntropy
Implements a Renyi entropy based threshold method by Kapur, Sahoo, & Wong.
ComputeRenyiEntropyThreshold() - Constructor for class net.imagej.ops.threshold.renyiEntropy.ComputeRenyiEntropyThreshold
 
ComputeRosinThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.rosin
Implements Rosin's threshold method.
ComputeRosinThreshold() - Constructor for class net.imagej.ops.threshold.rosin.ComputeRosinThreshold
 
Computers - Class in net.imagej.ops.special.computer
Utility class for looking up computer ops in a type-safe way.
ComputeShanbhagThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.shanbhag
Implements Shanbhag's threshold method.
ComputeShanbhagThreshold() - Constructor for class net.imagej.ops.threshold.shanbhag.ComputeShanbhagThreshold
 
ComputeThreshold<I,O> - Interface in net.imagej.ops.threshold
An algorithm for computing a threshold value that divides an object into two classes.
ComputeThresholdHistogram<T extends RealType<T>> - Interface in net.imagej.ops.threshold
Interface for threshold computation algorithms relying on a histogram.
ComputeTriangleThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.triangle
Implements a Triangle algorithm threshold method from Zack, Rogers, & Latt.
ComputeTriangleThreshold() - Constructor for class net.imagej.ops.threshold.triangle.ComputeTriangleThreshold
 
ComputeYenThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.yen
Implements Yen's threshold method (Yen, Chang, & Chang, and Sezgin & Sankur).
ComputeYenThreshold() - Constructor for class net.imagej.ops.threshold.yen.ComputeYenThreshold
 
concatenateView(List<? extends RandomAccessibleInterval<T>>, int) - Method in class net.imagej.ops.transform.TransformNamespace
Concatenate List of RandomAccessibleInterval along the specified axis.
concatenateView(List<? extends RandomAccessibleInterval<T>>, int, StackView.StackAccessMode) - Method in class net.imagej.ops.transform.TransformNamespace
Concatenate List of RandomAccessibleInterval along the specified axis.
ConcatenateViewWithAccessMode<T> - Class in net.imagej.ops.transform.concatenateView
Wraps the Views#concatenate(int, StackAccessMode, List) method.
ConcatenateViewWithAccessMode() - Constructor for class net.imagej.ops.transform.concatenateView.ConcatenateViewWithAccessMode
 
conditional(O, I, O, O) - Method in class net.imagej.ops.logic.LogicNamespace
 
conditional(I, O, O) - Method in class net.imagej.ops.logic.LogicNamespace
 
conditional(O, I, O) - Method in class net.imagej.ops.logic.LogicNamespace
 
ConfidenceIntervalAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale
Computes a confidence interval containing percentages of the an entire set of values in an IterableInterval.
ConfidenceIntervalAutoscaleMethod() - Constructor for class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
Construct a confidence interval that contains 95% of the data range.
ConfidenceIntervalAutoscaleMethod(double, double) - Constructor for class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
Construct a confidence interval with user specified percentages of the data range.
CONFIG_FILE - Static variable in class net.imagej.config.ConfigFileParameters
 
ConfigFileParameters - Class in net.imagej.config
This class reads launcher configuration parameters from a file and allows them to be maintained.
ConfigFileParameters(Context) - Constructor for class net.imagej.config.ConfigFileParameters
Constructs a ConfigFileParameters object.
ConfigFileParameters(Context, File) - Constructor for class net.imagej.config.ConfigFileParameters
Constructs a ConfigFileParameters object.
configure() - Method in class net.imagej.plugins.tools.AbstractColorTool
 
configure() - Method in class net.imagej.plugins.tools.FloodFillTool
Implements the configuration of this tool.
configure() - Method in class net.imagej.plugins.tools.PaintBrushTool
 
configure() - Method in class net.imagej.plugins.tools.PencilTool
 
configure() - Method in class net.imagej.plugins.tools.SprayCanTool
 
Conflict(FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Deprecated.
Conflict(boolean, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Deprecated.
Conflict(boolean, boolean, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Deprecated.
Conflict(boolean, boolean, String, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Deprecated.
Conflict(Conflicts.Conflict.Severity, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
 
Conflict(Conflicts.Conflict.Severity, String, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
 
ConflictDialog - Class in net.imagej.ui.swing.updater
This dialog lists conflicts and let's the user choose how to resolve (or ignore) them.
ConflictDialog(UpdaterFrame, String) - Constructor for class net.imagej.ui.swing.updater.ConflictDialog
 
conflictingVersions(FileObject, File, String) - Method in class net.imagej.updater.Conflicts
 
conflictList - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
conflicts - Variable in class net.imagej.ui.swing.updater.ResolveDependencies
 
Conflicts - Class in net.imagej.updater
A class describing conflicts in what is selected for updating/uploading.
Conflicts(FilesCollection) - Constructor for class net.imagej.updater.Conflicts
 
conflicts - Variable in class net.imagej.updater.Conflicts
 
conflicts - Variable in class net.imagej.updater.FilesCollection
 
Conflicts.Conflict - Class in net.imagej.updater
An upload or download conflict requiring user resolution.
Conflicts.Conflict.Severity - Enum in net.imagej.updater
 
Conflicts.Notice - Class in net.imagej.updater
Part of the conflict list, but really only a non-critical notice.
Conflicts.Resolution - Class in net.imagej.updater
 
conforms() - Method in class net.imagej.ops.coloc.icq.LiICQ
 
conforms() - Method in class net.imagej.ops.coloc.kendallTau.KendallTauBRank
 
conforms() - Method in class net.imagej.ops.coloc.maxTKendallTau.MTKT
 
conforms() - Method in interface net.imagej.ops.Contingent
True if the contingency holds; i.e., the current circumstances conform to the contingency's requirements.
conforms() - Method in class net.imagej.ops.copy.CopyArrayImg
 
conforms() - Method in class net.imagej.ops.copy.CopyII
 
conforms() - Method in class net.imagej.ops.copy.CopyImg
 
conforms() - Method in class net.imagej.ops.copy.CopyImgLabeling
 
conforms() - Method in class net.imagej.ops.copy.CopyRAI
 
conforms() - Method in class net.imagej.ops.create.imgPlus.DefaultCreateImgPlus
 
conforms() - Method in class net.imagej.ops.create.kernel.CreateKernel2D
 
conforms() - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
conforms() - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
 
conforms() - Method in class net.imagej.ops.features.lbp2d.AbstractLBP2DFeature
 
conforms() - Method in class net.imagej.ops.features.tamura2d.AbstractTamuraFeature
 
conforms() - Method in class net.imagej.ops.features.zernike.AbstractZernikeFeature
 
conforms() - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
 
conforms() - Method in class net.imagej.ops.filter.bilateral.DefaultBilateral
 
conforms() - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveC
 
conforms() - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF
 
conforms() - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFT
 
conforms() - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFTF
 
conforms() - Method in class net.imagej.ops.filter.correlate.PadAndCorrelateFFT
 
conforms() - Method in class net.imagej.ops.filter.derivativeGauss.DefaultDerivativeGauss
 
conforms() - Method in class net.imagej.ops.filter.dog.DoGVaryingSigmas
 
conforms() - Method in class net.imagej.ops.filter.fft.FFTMethodsOpC
Make sure that the input and output size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.gauss.DefaultGaussRA
 
conforms() - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpC
Make sure that the input size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpI
Make sure that the input size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.sigma.DefaultSigmaFilter
 
conforms() - Method in class net.imagej.ops.geom.geom2d.DefaultContour
 
conforms() - Method in class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMarchingCubes
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
 
conforms() - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
conforms() - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultSmallestOrientedBoundingBox
 
conforms() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
 
conforms() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
 
conforms() - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
 
conforms() - Method in class net.imagej.ops.image.invert.InvertIIInteger
 
conforms() - Method in class net.imagej.ops.image.watershed.Watershed
 
conforms() - Method in class net.imagej.ops.image.watershed.WatershedBinary
 
conforms() - Method in class net.imagej.ops.image.watershed.WatershedBinarySingleSigma
 
conforms() - Method in class net.imagej.ops.image.watershed.WatershedSeeded
 
conforms() - Method in class net.imagej.ops.imagemoments.AbstractImageMomentOp
 
conforms() - Method in class net.imagej.ops.labeling.cca.DefaultCCA
 
conforms() - Method in class net.imagej.ops.labeling.MergeLabeling
 
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.And
 
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
 
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
 
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
 
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
 
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAI
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAI
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAI
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAI
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapIIAndIIInplace
 
conforms() - Method in class net.imagej.ops.map.MapIIAndIIInplaceParallel
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToII
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAI
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToII
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToIIParallel
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
 
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
 
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
 
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
conforms() - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
 
conforms() - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
 
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
conforms() - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
 
conforms() - Method in class net.imagej.ops.morphology.close.ListClose
 
conforms() - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
 
conforms() - Method in class net.imagej.ops.morphology.dilate.ListDilate
 
conforms() - Method in class net.imagej.ops.morphology.erode.DefaultErode
 
conforms() - Method in class net.imagej.ops.morphology.erode.ListErode
 
conforms() - Method in class net.imagej.ops.morphology.open.ListOpen
 
conforms() - Method in class net.imagej.ops.morphology.topHat.ListTopHat
 
conforms() - Method in class net.imagej.ops.segment.detectJunctions.DefaultDetectJunctions
 
conforms() - Method in class net.imagej.ops.segment.detectRidges.DefaultDetectRidges
 
conforms() - Method in class net.imagej.ops.stats.regression.leastSquares.Quadric
 
conforms() - Method in class net.imagej.ops.threshold.apply.LocalThreshold
 
conforms() - Method in class net.imagej.ops.threshold.localMean.LocalMeanThreshold
 
conforms() - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThreshold
 
conforms() - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThreshold
 
conforms() - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold
 
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.transform.project.DefaultProjectParallel
 
conforms() - Method in class net.imagej.ops.transform.project.ProjectRAIToII
 
conforms() - Method in class net.imagej.ops.transform.project.ProjectRAIToIterableInterval
 
conforms() - Method in class net.imagej.ops.transform.scaleView.DefaultScaleView
 
conforms() - Method in class net.imagej.ops.transform.subsampleView.SubsampleIntervalViewStepsForDims
 
conforms() - Method in class net.imagej.ops.transform.subsampleView.SubsampleViewStepsForDims
 
console - Variable in class net.imagej.updater.CommandLine.ConsoleAuthenticator
 
console - Variable in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
ConsoleAuthenticator() - Constructor for class net.imagej.updater.CommandLine.ConsoleAuthenticator
 
ConsoleUserInterface() - Constructor for class net.imagej.updater.CommandLine.ConsoleUserInterface
 
constant(String, Object) - Method in class net.imagej.tensorflow.GraphBuilder
 
constant(String, float[], long...) - Method in class net.imagej.tensorflow.GraphBuilder
 
constant(String, Tensor<T>) - Method in class net.imagej.tensorflow.GraphBuilder
 
ConstantToArrayImage - Class in net.imagej.ops.math
Wrapper class for binary math operations between constant values and ArrayImgs.
ConstantToArrayImage.AddByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddDouble - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddFloat - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddUnsignedByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddUnsignedInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddUnsignedLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddUnsignedShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideDouble - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideFloat - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideUnsignedByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideUnsignedInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideUnsignedLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideUnsignedShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyDouble - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyFloat - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyUnsignedByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyUnsignedInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyUnsignedLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyUnsignedShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractDouble - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractFloat - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractUnsignedByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractUnsignedInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractUnsignedLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractUnsignedShort - Class in net.imagej.ops.math
 
ConstantToArrayImageP - Class in net.imagej.ops.math
Wrapper class for multi-threaded version of binary math operations between constant values and ArrayImgs.
ConstantToArrayImageP.AddByte - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type ByteType
ConstantToArrayImageP.AddDouble - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type DoubleType
ConstantToArrayImageP.AddFloat - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type FloatType
ConstantToArrayImageP.AddInt - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type IntType
ConstantToArrayImageP.AddLong - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type LongType
ConstantToArrayImageP.AddShort - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type ShortType
ConstantToArrayImageP.AddUnsignedByte - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.AddUnsignedInt - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.AddUnsignedLong - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.AddUnsignedShort - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.DivideByte - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type ByteType
ConstantToArrayImageP.DivideDouble - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type DoubleType
ConstantToArrayImageP.DivideFloat - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type FloatType
ConstantToArrayImageP.DivideInt - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type IntType
ConstantToArrayImageP.DivideLong - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type LongType
ConstantToArrayImageP.DivideShort - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type ShortType
ConstantToArrayImageP.DivideUnsignedByte - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.DivideUnsignedInt - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.DivideUnsignedLong - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.DivideUnsignedShort - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.MultiplyByte - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type ByteType
ConstantToArrayImageP.MultiplyDouble - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type DoubleType
ConstantToArrayImageP.MultiplyFloat - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type FloatType
ConstantToArrayImageP.MultiplyInt - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type IntType
ConstantToArrayImageP.MultiplyLong - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type LongType
ConstantToArrayImageP.MultiplyShort - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type ShortType
ConstantToArrayImageP.MultiplyUnsignedByte - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.MultiplyUnsignedInt - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.MultiplyUnsignedLong - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.MultiplyUnsignedShort - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.SubtractByte - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type ByteType
ConstantToArrayImageP.SubtractDouble - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type DoubleType
ConstantToArrayImageP.SubtractFloat - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type FloatType
ConstantToArrayImageP.SubtractInt - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type IntType
ConstantToArrayImageP.SubtractLong - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type LongType
ConstantToArrayImageP.SubtractShort - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type ShortType
ConstantToArrayImageP.SubtractUnsignedByte - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.SubtractUnsignedInt - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.SubtractUnsignedLong - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.SubtractUnsignedShort - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedShortType
ConstantToIIOutputII - Class in net.imagej.ops.math
Wrapper class for functional binary math operations between constant values and IterableIntervals, and write the result to IterableIntervals.
ConstantToIIOutputII.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputII.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputII.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputII.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputRAI - Class in net.imagej.ops.math
Wrapper class for functional binary math operations between constant values and IterableIntervals, and write the result to RandomAccessibleIntervals.
ConstantToIIOutputRAI.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputRAI.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputRAI.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputRAI.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToPlanarImage - Class in net.imagej.ops.math
Wrapper class for binary math operations between constant values and PlanarImgs.
ConstantToPlanarImage.AddByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddDouble - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddFloat - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddUnsignedByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddUnsignedInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddUnsignedLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddUnsignedShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideDouble - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideFloat - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideUnsignedByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideUnsignedInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideUnsignedLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideUnsignedShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyDouble - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyFloat - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyUnsignedByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyUnsignedInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyUnsignedLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyUnsignedShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractDouble - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractFloat - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractUnsignedByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractUnsignedInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractUnsignedLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractUnsignedShort - Class in net.imagej.ops.math
 
constrain(AxisType, AxisSubrange) - Method in class net.imagej.sampler.SamplingDefinition
Replaces the current constraining definition of a given axis within the current SamplingDefinition with a given subrange.
contains(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
contains(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
contains(Object) - Method in class net.imagej.legacy.convert.TableListWrapper
 
contains(Object) - Method in class net.imagej.omero.LazyTableList
 
contains(Roi) - Method in class net.imagej.omero.legacy.LazyOverlay
 
contains(String) - Method in class net.imagej.server.services.DefaultObjectService
 
contains(String) - Method in interface net.imagej.server.services.ObjectService
Checks if exists an Object with the given ID.
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.PointFigure
Checks if a Point2D.Double is near any point contained in the figure
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper
 
containsAll(Collection<?>) - Method in class net.imagej.omero.LazyTableList
 
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
 
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Method
 
containsDebugInfo(String) - Static method in class net.imagej.updater.util.DependencyAnalyzer
 
context() - Method in class net.imagej.AbstractData
 
context() - Static method in class net.imagej.matlab.ImageJMATLAB
 
CONTEXT_MENU_ROOT - Static variable in interface net.imagej.display.ImageDisplay
Pop-up context menu root for image displays.
ContextMenuHandler - Class in net.imagej.plugins.tools
Handles display of general-purpose context menu (e.g., on right mouse click).
ContextMenuHandler() - Constructor for class net.imagej.plugins.tools.ContextMenuHandler
 
Contingent - Interface in net.imagej.ops
A contingency that may hold, or not, depending on the circumstances.
contour(RandomAccessibleInterval<T>, boolean) - Method in class net.imagej.ops.geom.GeomNamespace
 
contrast(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
contrast(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
contrast(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
contrast(O, RandomAccessibleInterval<I>) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
convert(Object, Class<T>) - Method in class net.imagej.convert.ConvertIntArrayToFinalInterval
 
convert(Object, Class<T>) - Method in class net.imagej.convert.ConvertListToFinalInterval
 
convert(Object, Class<T>) - Method in class net.imagej.convert.ConvertLongArrayToFinalInterval
 
convert(Object, Class<T>) - Method in class net.imagej.convert.ConvertRAIToIterableInterval
 
convert(Object, Class<T>) - Method in class net.imagej.convert.DatasetToImgConverter
 
convert(Object, Class<T>) - Method in class net.imagej.convert.DatasetToImgPlusConverter
 
convert(Object, Class<I>) - Method in class net.imagej.convert.ImgLabelingToImgConverter
 
convert(Object, Class<L>) - Method in class net.imagej.convert.ImgToImgLabelingConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
 
convert(M) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
 
convert(R) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
 
convert(BinaryCompositeMaskPredicate<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
 
convert(Box) - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
 
convert(Roi) - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter
 
convert(WritableBox) - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter
 
convert(Ellipsoid) - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
 
convert(OvalRoi) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter
 
convert(WritableEllipsoid) - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter
 
convert(Line) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
 
convert(Line) - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter
 
convert(WritableLine) - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter
 
convert(PointMask) - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter
 
convert(PointRoi) - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter
 
convert(RealPointCollection<RealLocalizable>) - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter
 
convert(WritablePointMask) - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter
 
convert(WritableRealPointCollection<RealLocalizableRealPositionable>) - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter
 
convert(Polygon2D) - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter
 
convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter
 
convert(WritablePolygon2D) - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter
 
convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter
 
convert(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter
 
convert(Polyline) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter
 
convert(WritablePolyline) - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter
 
convert(RealMaskRealInterval) - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
convert(Roi) - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter
 
convert(ShapeRoi) - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter
 
convert(Object, Class<T>) - Method in class net.imagej.legacy.convert.TableUnwrapper
 
convert(Object, Class<T>) - Method in class net.imagej.matlab.DatasetMATLABConverter
 
convert(Object, Class<T>) - Method in class net.imagej.matlab.MATLABDatasetConverter
 
convert(Histogram1d<?>) - Method in class net.imagej.notebook.chart.Histogram1dToHTMLConverter
 
convert(BufferedImage) - Method in class net.imagej.notebook.image.BufferedImageToHTMLConverter
 
convert(DatasetView) - Method in class net.imagej.notebook.image.DatasetViewToHTMLConverter
 
convert(RandomAccessibleInterval<?>) - Method in class net.imagej.notebook.image.RAIToHTMLConverter
 
convert(List<?>) - Method in class net.imagej.notebook.mime.ListToHTMLConverter
 
convert(Object, Class<T>) - Method in class net.imagej.notebook.mime.MIMEConverter
 
convert(I) - Method in class net.imagej.notebook.mime.MIMEConverter
 
convert(Table<?, ?>) - Method in class net.imagej.notebook.table.TableToHTMLConverter
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
convert(R) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.IJROIToOverlay
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.IJROIToROITree
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.AbstractIJRoiWrapperToShapeData
 
convert(I) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.AbstractIJRoiWrapperToShapeData
 
convert(DefaultRoiWrapper<?>) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData
 
convert(IJLineWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IJLineWrapperToLineData
 
convert(IrregularPolylineRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData
 
convert(OvalRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData
 
convert(PolygonRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData
 
convert(PolylineRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData
 
convert(RoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.RoiWrapperToRectangleData
 
convert(ShapeRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData
 
convert(TextRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.TextRoiWrapperToTextData
 
convert(UnmodifiablePolylineRoiWrapper) - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.MaskPredicateToOverlay
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.MaskPredicateToROITree
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.OverlayToROITree
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
 
convert(Object, Class<T>) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
 
convert(TextData, BoundaryType) - Method in class net.imagej.omero.legacy.text.OMEROToImageJText
 
convert(TextRoi) - Method in class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
 
convert(M, String) - Method in class net.imagej.omero.roi.AbstractMaskPredicateToShapeData
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.AbstractOMERORealMaskUnwrapper
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.AbstractShapeDataToRealMaskRealInterval
 
convert(S, BoundaryType) - Method in class net.imagej.omero.roi.AbstractShapeDataToRealMaskRealInterval
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.AbstractTreeNodeToROIData
 
convert(Ellipsoid, String) - Method in class net.imagej.omero.roi.ellipse.ImageJToOMEROEllipse
 
convert(EllipseData, BoundaryType) - Method in class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
 
convert(Line, String) - Method in class net.imagej.omero.roi.line.ImageJToOMEROLine
 
convert(LineData, BoundaryType) - Method in class net.imagej.omero.roi.line.OMEROToImageJLine
 
convert(MaskInterval, String) - Method in class net.imagej.omero.roi.mask.MaskIntervalToMaskData
 
convert(MaskData, BoundaryType) - Method in class net.imagej.omero.roi.mask.OMEROToImageJMask
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.mask.RAIToMaskData
 
convert(RealMaskRealInterval, String) - Method in class net.imagej.omero.roi.mask.RealMaskRealIntervalToMaskData
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.OMEROROICollectionToROIData
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.OMEROROIElementToROIData
 
convert(PointMask, String) - Method in class net.imagej.omero.roi.point.ImageJToOMEROPoint
 
convert(PointData, BoundaryType) - Method in class net.imagej.omero.roi.point.OMEROToImageJPoint
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
 
convert(Polygon2D, String) - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolygon
 
convert(Polyline, String) - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolyline
 
convert(PolygonData, BoundaryType) - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
 
convert(PolylineData, BoundaryType) - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskToShapeData
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMaskToShapeData
 
convert(Box, String) - Method in class net.imagej.omero.roi.rectangle.ImageJToOMERORectangle
 
convert(RectangleData, BoundaryType) - Method in class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
 
convert(Object, Class<T>) - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealIntervalToShapeData
 
convert(Object, Class<T>) - Method in class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter
 
convert(Object, Class<T>) - Method in class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter
 
convert() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "convert" namespace.
convert(A, B) - Method in class net.imagej.ops.special.computer.ComputerConverter
 
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractMaskToRAConverter
 
convert(M) - Method in class net.imagej.roi.AbstractMaskToRAConverter
 
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRAToMaskConverter
 
convert(R) - Method in class net.imagej.roi.AbstractRAToMaskConverter
 
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
 
convert(M) - Method in class net.imagej.roi.AbstractRealMaskToRRAConverter
 
convert(Object, Class<T>) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
 
convert(R) - Method in class net.imagej.roi.AbstractRRAToRealMaskConverter
 
convert(MaskInterval) - Method in class net.imagej.roi.MaskIntervalToRAIConverter
 
convert(Mask) - Method in class net.imagej.roi.MaskToRAConverter
 
convert(RandomAccessibleInterval<BoolType>) - Method in class net.imagej.roi.RAIToMaskIntervalConverter
 
convert(RandomAccessible<BoolType>) - Method in class net.imagej.roi.RAToMaskConverter
 
convert(RealMaskRealInterval) - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
 
convert(RealMask) - Method in class net.imagej.roi.RealMaskToRRAConverter
 
convert(RealRandomAccessibleRealInterval<BoolType>) - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
 
convert(RealRandomAccessible<BoolType>) - Method in class net.imagej.roi.RRAToRealMaskConverter
 
convert(MaskAsRandomAccessible<BoolType>) - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
 
convert(MaskIntervalAsRandomAccessibleInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
 
convert(RandomAccessibleAsMask<BoolType>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
 
convert(RandomAccessibleIntervalAsMaskInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
 
convert(RealMaskAsRealRandomAccessible<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
 
convert(RealMaskRealIntervalAsRealRandomAccessibleRealInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
 
convert(RealRandomAccessibleAsRealMask<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
 
convert(RealRandomAccessibleRealIntervalAsRealMaskRealInterval<BoolType>) - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
 
convert(Object, Class<T>) - Method in class net.imagej.server.converter.NumberToNumericTypeConverter
 
convert(I) - Method in class net.imagej.server.converter.NumberToNumericTypeConverter
 
convert(Double) - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
 
convert(Float) - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.FloatToFloatTypeConverter
 
convert(Integer) - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.IntegerToIntTypeConverter
 
convert(Long) - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.LongToLongTypeConverter
 
convert(List<Checksummer.StringAndFile>) - Static method in class net.imagej.updater.Checksummer
 
ConvertIIs<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.convert.imageType
 
ConvertIIs() - Constructor for class net.imagej.ops.convert.imageType.ConvertIIs
 
ConvertImages - Class in net.imagej.ops.convert
Ops for converting images between types.
ConvertImages.Bit<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Cfloat32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Cfloat64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Float32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Float64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Int16<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Int32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Int64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Int8<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Uint12<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Uint128<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Uint16<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Uint2<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Uint32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Uint4<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Uint64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImages.Uint8<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertImgPlus<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.commands.convert
 
ConvertImgPlus() - Constructor for class net.imagej.ops.commands.convert.ConvertImgPlus
 
ConvertIntArrayToDimensions<D extends Dimensions> - Interface in net.imagej.convert
Interface to describe Converters from native int[] arrays to Dimensions
ConvertIntArrayToFinalInterval - Class in net.imagej.convert
Converter from native int[] array to Dimensions Christian Dietz, University of Konstanz
ConvertIntArrayToFinalInterval() - Constructor for class net.imagej.convert.ConvertIntArrayToFinalInterval
 
ConvertListToFinalInterval - Class in net.imagej.convert
Converter for converting Lists to FinalInterval.
ConvertListToFinalInterval() - Constructor for class net.imagej.convert.ConvertListToFinalInterval
 
ConvertLongArrayToDimensions<D extends Dimensions> - Interface in net.imagej.convert
Interface to describe Converters from native long[] arrays to Dimensions
ConvertLongArrayToFinalInterval - Class in net.imagej.convert
Converter from native long[] array to Dimensions Christian Dietz, University of Konstanz
ConvertLongArrayToFinalInterval() - Constructor for class net.imagej.convert.ConvertLongArrayToFinalInterval
 
ConvertNamespace - Class in net.imagej.ops.convert
The convert namespace contains operations for converting between types.
ConvertNamespace() - Constructor for class net.imagej.ops.convert.ConvertNamespace
 
convertOMEROROI(TreeNode<?>, Interval) - Method in class net.imagej.omero.DefaultOMEROService
 
convertOMEROROI(TreeNode<?>, Interval) - Method in interface net.imagej.omero.OMEROService
Converts the given TreeNode to ROIData.
convertOMEROTable(Table<?, ?>) - Method in class net.imagej.omero.DefaultOMEROService
 
convertOMEROTable(Table<?, ?>) - Method in interface net.imagej.omero.OMEROService
Converts the given ImageJ table to an OMERO table, but does not save the table to the server.
ConvertRAIToIterableInterval - Class in net.imagej.convert
Converts RandomAccessibleInterval to IterableInterval using Views
ConvertRAIToIterableInterval() - Constructor for class net.imagej.convert.ConvertRAIToIterableInterval
 
ConvertToMask - Class in net.imagej.plugins.commands.overlay
Creates an Overlay representing the thresholded pixels of a Dataset.
ConvertToMask() - Constructor for class net.imagej.plugins.commands.overlay.ConvertToMask
 
ConvertTypes - Class in net.imagej.ops.convert
Converters for converting between Complex types
ConvertTypes.ComplexToBit<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToCfloat32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToCfloat64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToFloat32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToFloat64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToInt16<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToInt32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToInt64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToInt8<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToUint12<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToUint128<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToUint16<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToUint2<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToUint32<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToUint4<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToUint64<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.ComplexToUint8<C extends ComplexType<C>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToBit<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToInt16<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToInt32<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToInt64<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToInt8<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToUint12<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToUint128<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToUint16<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToUint2<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToUint32<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToUint4<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToUint64<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
ConvertTypes.IntegerToUint8<T extends IntegerType<T>> - Class in net.imagej.ops.convert
 
convexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
convexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
convexity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
convexity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
convexity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
convexity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
Convolve<I extends RealType<I>,K extends RealType<K>,O extends RealType<O>> - Class in net.imagej.ops.commands.convolve
 
Convolve() - Constructor for class net.imagej.ops.commands.convolve.Convolve
 
convolve(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, OutOfBoundsFactory<I, RandomAccessibleInterval<I>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, O) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long...) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessible<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
convolve(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "convolve" operation on the given arguments.
ConvolveFFTC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter.convolve
Convolve op for (@link RandomAccessibleInterval)
ConvolveFFTC() - Constructor for class net.imagej.ops.filter.convolve.ConvolveFFTC
 
ConvolveNaiveC<I extends RealType<I>,K extends RealType<K>,O extends RealType<O>> - Class in net.imagej.ops.filter.convolve
Convolves an image naively.
ConvolveNaiveC() - Constructor for class net.imagej.ops.filter.convolve.ConvolveNaiveC
 
ConvolveNaiveF<I extends RealType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K>> - Class in net.imagej.ops.filter.convolve
Function adapter for ConvolveFFTC.
ConvolveNaiveF() - Constructor for class net.imagej.ops.filter.convolve.ConvolveNaiveF
 
cooccurrenceMatrix(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.image.ImageNamespace
 
CooccurrenceMatrix2D<T extends RealType<T>> - Class in net.imagej.ops.image.cooccurrenceMatrix
Calculates coocccurrence matrix from an 2D-IterableInterval.
CooccurrenceMatrix2D() - Constructor for class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
 
CooccurrenceMatrix3D<T extends RealType<T>> - Class in net.imagej.ops.image.cooccurrenceMatrix
Calculates coocccurrence matrix from an 3D-IterableInterval.
CooccurrenceMatrix3D() - Constructor for class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
 
CoocHXY - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocHXY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocHXY
 
CoocMeanX - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocMeanX() - Constructor for class net.imagej.ops.features.haralick.helper.CoocMeanX
 
CoocMeanY - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocMeanY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocMeanY
 
CoocPX - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocPX() - Constructor for class net.imagej.ops.features.haralick.helper.CoocPX
 
CoocPXMinusY - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocPXMinusY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocPXMinusY
 
CoocPXPlusY - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocPXPlusY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocPXPlusY
 
CoocPY - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocPY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocPY
 
CoocStdX - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocStdX() - Constructor for class net.imagej.ops.features.haralick.helper.CoocStdX
 
CoocStdY - Class in net.imagej.ops.features.haralick.helper
NB: Helper class.
CoocStdY() - Constructor for class net.imagej.ops.features.haralick.helper.CoocStdY
 
CoordinatesEquationOp<T,N extends Number> - Interface in net.imagej.ops.image.equation
An operation which computes image values based on coordinates.
copy() - Method in interface net.imagej.axis.CalibratedAxis
Creates an exact duplicate of this axis.
copy() - Method in class net.imagej.axis.ChapmanRichardsAxis
 
copy() - Method in class net.imagej.axis.DefaultLinearAxis
 
copy() - Method in class net.imagej.axis.EnumeratedAxis
 
copy() - Method in class net.imagej.axis.ExponentialAxis
 
copy() - Method in class net.imagej.axis.ExponentialRecoveryAxis
 
copy() - Method in class net.imagej.axis.GammaVariateAxis
 
copy() - Method in class net.imagej.axis.GaussianAxis
 
copy() - Method in class net.imagej.axis.IdentityAxis
 
copy() - Method in class net.imagej.axis.InverseRodbardAxis
 
copy() - Method in interface net.imagej.axis.LinearAxis
 
copy() - Method in class net.imagej.axis.LogLinearAxis
 
copy() - Method in class net.imagej.axis.PolynomialAxis
 
copy() - Method in class net.imagej.axis.PowerAxis
 
copy() - Method in class net.imagej.axis.RodbardAxis
 
copy() - Method in interface net.imagej.Dataset
 
copy() - Method in class net.imagej.DefaultDataset
 
copy() - Method in class net.imagej.ImgPlus
 
copy(Mesh, Mesh) - Static method in class net.imagej.mesh.Meshes
Copies a mesh into another mesh.
copy(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace
 
Copy(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
copy() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
copy() - Method in class net.imagej.ops.morphology.thin.GuoHallThinningStrategy
 
copy() - Method in class net.imagej.ops.morphology.thin.HilditchThinningStrategy
 
copy() - Method in class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy
 
copy() - Method in interface net.imagej.ops.morphology.thin.ThinningStrategy
Returns a seperate copy of this strategy.
copy() - Method in class net.imagej.ops.morphology.thin.ZhangSuenThinningStrategy
 
copy() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "copy" namespace.
copy() - Method in class net.imagej.plugins.commands.assign.noisereduce.WithinRadiusOfPointSetOriginCondition
 
copy() - Method in class net.imagej.table.ResultsImg
 
copy() - Method in class net.imagej.types.BigComplex
Creates a new BigComplex whose values are taken from this BigComplex.
copy() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
copy() - Method in class net.imagej.types.PreciseFixedFloatType
 
copy() - Method in class net.imagej.types.UnboundedIntegerType
 
copy(InputStream, OutputStream, boolean, boolean) - Static method in class net.imagej.updater.Diff
Copy bytes from an InputStream to an OutputStream.
copy(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Static method in class net.imagej.util.Images
 
copyAndCleanImgPlusMetadata(Interval, ImgPlusMetadata, ImgPlusMetadata) - Static method in class net.imagej.ops.MetadataUtil
copies all ImgPlusMetadata from in to out.
copyAndCleanTypedSpace(Interval, CalibratedSpace<C>, CalibratedSpace<C>) - Static method in class net.imagej.ops.MetadataUtil
copies the CalibratedAxis attributes from in to out.
CopyArrayImg<T extends NativeType<T>,A extends ArrayDataAccess<A>> - Class in net.imagej.ops.copy
Copying ArrayImg into another ArrayImg
CopyArrayImg() - Constructor for class net.imagej.ops.copy.CopyArrayImg
 
copyClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
copyColorTables(ImgPlus<?>, ImgPlus<?>) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Copies color table references from a source ImgPlus to a destination ImgPlus.
copyCursor() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
copyData(ImgPlus<? extends RealType<?>>, ImgPlus<? extends RealType<?>>, AxisType, long, long, long) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Copies a region of data from a srcImgPlus to a dstImgPlus.
copyDataFrom(Dataset) - Method in interface net.imagej.Dataset
Changes a Dataset's internal data and metadata to match that from a given Dataset.
copyDataFrom(Dataset) - Method in class net.imagej.DefaultDataset
 
copyHyperVolume(ImgPlus<? extends RealType<?>>, long[], long[], ImgPlus<? extends RealType<?>>, long[], long[]) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Copies a hypervolume from a source ImgPlus to a destination ImgPlus.
CopyII<T> - Class in net.imagej.ops.copy
Copies an IterableInterval into another IterableInterval
CopyII() - Constructor for class net.imagej.ops.copy.CopyII
 
copyImageMetadata(ImageMetadata, ImageMetadata) - Static method in class net.imagej.ops.MetadataUtil
copies the ImageMetadata from in to out
CopyImg<T extends NativeType<T>> - Class in net.imagej.ops.copy
Copying Img into another Img.
CopyImg() - Constructor for class net.imagej.ops.copy.CopyImg
 
CopyImgLabeling<T extends IntegerType<T> & NativeType<T>,L> - Class in net.imagej.ops.copy
Copying ImgLabeling into another ImgLabeling
CopyImgLabeling() - Constructor for class net.imagej.ops.copy.CopyImgLabeling
 
copyImgPlusMetadata(ImgPlusMetadata, ImgPlusMetadata) - Static method in class net.imagej.ops.MetadataUtil
copies all ImgPlus metadata ImgPlusMetadata from in to out.
copyInto(Dataset) - Method in interface net.imagej.Dataset
Copies the dataset's pixels into the given target dataset.
copyInto(Dataset) - Method in class net.imagej.DefaultDataset
 
CopyLabelingMapping<L> - Class in net.imagej.ops.copy
Copies a LabelingMapping into another LabelingMapping
CopyLabelingMapping() - Constructor for class net.imagej.ops.copy.CopyLabelingMapping
 
copyName(Named, Named) - Static method in class net.imagej.ops.MetadataUtil
copies the name from in to out
CopyNamespace - Class in net.imagej.ops.copy
The copy namespace contains ops that copy data.
CopyNamespace() - Constructor for class net.imagej.ops.copy.CopyNamespace
 
CopyRAI<T> - Class in net.imagej.ops.copy
CopyRAI() - Constructor for class net.imagej.ops.copy.CopyRAI
 
CopyRealTypes<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.convert.copy
Copies the value of one RealType into another using double precision.
CopyRealTypes() - Constructor for class net.imagej.ops.convert.copy.CopyRealTypes
 
copySource(Sourced, Sourced) - Static method in class net.imagej.ops.MetadataUtil
copies the source attribute from in to out
CopyToSystem - Class in net.imagej.plugins.commands.app
Copies an ARGB image plane to the system clipboard for use by external programs.
CopyToSystem() - Constructor for class net.imagej.plugins.commands.app.CopyToSystem
 
CopyType<T extends Type<T>> - Class in net.imagej.ops.copy
Copy Type to another Type
CopyType() - Constructor for class net.imagej.ops.copy.CopyType
 
copyTypedSpace(CalibratedSpace<C>, CalibratedSpace<C>) - Static method in class net.imagej.ops.MetadataUtil
copies the CalibratedSpace attributes from in to out.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long...) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
correlate(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "correlate" operation on the given arguments.
CorrelateFFTC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter.correlate
Correlate op for (@link RandomAccessibleInterval)
CorrelateFFTC() - Constructor for class net.imagej.ops.filter.correlate.CorrelateFFTC
 
correlation(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
correlation(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
Correlation3x3Operation - Class in net.imagej.plugins.commands.correlate
Correlation3x3Operation is used for general 3x3 correlation.
Correlation3x3Operation(Dataset, RealRect, double[]) - Constructor for class net.imagej.plugins.commands.correlate.Correlation3x3Operation
Constructor.
cos(double) - Method in class net.imagej.ops.math.MathNamespace
 
cos(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Cos() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Cos
 
cosh(double) - Method in class net.imagej.ops.math.MathNamespace
 
cosh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Cosh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Cosh
 
cot(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Cot() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Cot
 
coth(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Coth() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Coth
 
count - Variable in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
count - Variable in class net.imagej.updater.util.Downloader
 
COUNT_BYTES - Static variable in class net.imagej.mesh.io.stl.STLMeshIO
 
create(long...) - Method in class net.imagej.DatasetFactory
 
create(Dimensions) - Method in class net.imagej.DatasetFactory
 
create(int[]) - Method in class net.imagej.DatasetFactory
 
create(long[], RealType<?>) - Method in class net.imagej.DatasetFactory
Deprecated.
create(Dimensions, RealType<?>) - Method in class net.imagej.DatasetFactory
Deprecated.
create(int[], RealType<?>) - Method in class net.imagej.DatasetFactory
Deprecated.
create(Supplier<RealType<?>>, long...) - Method in class net.imagej.DatasetFactory
Deprecated.
create(Supplier<RealType<?>>, Dimensions) - Method in class net.imagej.DatasetFactory
Deprecated.
create(Supplier<RealType<?>>, int[]) - Method in class net.imagej.DatasetFactory
Deprecated.
create(long...) - Method in class net.imagej.DatasetImgFactory
 
create(Dimensions) - Method in class net.imagej.DatasetImgFactory
 
create(int[]) - Method in class net.imagej.DatasetImgFactory
 
create(long[], T) - Method in class net.imagej.DatasetImgFactory
Deprecated.
create(long[], String, AxisType[], int, boolean, boolean) - Method in interface net.imagej.DatasetService
Creates a new dataset.
create(long[], String, AxisType[], int, boolean, boolean, boolean) - Method in interface net.imagej.DatasetService
Creates a new dataset.
create(T, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService
Creates a new dataset.
create(T, long[], String, AxisType[], boolean) - Method in interface net.imagej.DatasetService
Creates a new dataset.
create(ImgFactory<T>, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService
Creates a new dataset using the provided ImgFactory.
create(ImgPlus<T>) - Method in interface net.imagej.DatasetService
Creates a new dataset using the provided ImgPlus.
create(RandomAccessibleInterval<T>) - Method in interface net.imagej.DatasetService
Creates a new dataset using the provided RandomAccessibleInterval.
create(ImgFactory<T>, T, long[], String, AxisType[]) - Method in interface net.imagej.DatasetService
create(long[], String, AxisType[], int, boolean, boolean) - Method in class net.imagej.DefaultDatasetService
 
create(long[], String, AxisType[], int, boolean, boolean, boolean) - Method in class net.imagej.DefaultDatasetService
 
create(T, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService
 
create(T, long[], String, AxisType[], boolean) - Method in class net.imagej.DefaultDatasetService
 
create(ImgFactory<T>, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService
 
create(ImgPlus<T>) - Method in class net.imagej.DefaultDatasetService
 
create(RandomAccessibleInterval<T>) - Method in class net.imagej.DefaultDatasetService
 
create(ImgFactory<T>, T, long[], String, AxisType[]) - Method in class net.imagej.DefaultDatasetService
Deprecated.
create(String, String) - Method in class net.imagej.legacy.plugin.DefaultLegacyEditor
 
create(String, String) - Method in interface net.imagej.legacy.plugin.LegacyEditor
 
create(Module) - Static method in class net.imagej.legacy.plugin.MacroRecorderExcludedInputs
 
create(SearchResult) - Method in class net.imagej.legacy.search.HelpSearchActionFactory
 
create(SearchResult) - Method in class net.imagej.legacy.search.OpenTemplateSearchActionFactory
 
create(SearchResult) - Method in class net.imagej.legacy.search.SourceSearchActionFactory
 
create(ImgFactory<T>, Dimensions, T) - Static method in class net.imagej.ops.create.img.Imgs
Creates an Img.
create(Class<NS>, OpEnvironment) - Method in class net.imagej.ops.DefaultNamespaceService
 
create(Class<NS>, OpEnvironment) - Method in interface net.imagej.ops.NamespaceService
Creates a Namespace with the given op execution environment.
create() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "create" namespace.
create(String, Object...) - Static method in class net.imagej.ops.OpRef
Creates a new op reference.
create(Type, Object...) - Static method in class net.imagej.ops.OpRef
Creates a new op reference.
create(SearchResult) - Method in class net.imagej.ops.search.RunOpSearchActionFactory
 
create(UpdateSite, String) - Static method in class net.imagej.updater.URLChange
Proposes a new URL for this update site.
createAffine(AffineTransform) - Static method in class net.imagej.omero.roi.ROIConverters
Converts an OMERO AffineTransform to an ImgLib2 AffineTransform2D.
createAffine(AffineTransform2D) - Static method in class net.imagej.omero.roi.ROIConverters
Converts an ImgLib2 AffineTransform2D to an OMERO AffineTransform.
createBoundaryTypeString(BoundaryType) - Static method in class net.imagej.omero.roi.ROIConverters
 
createDataset(String, ColorTable) - Method in class net.imagej.lut.DefaultLUTService
 
createDataset(String, ColorTable) - Method in interface net.imagej.lut.LUTService
Creates a new dataset showing the given ColorTable as a ramp.
createDataView(Data) - Method in class net.imagej.display.DefaultImageDisplayService
 
createDataView(Data) - Method in interface net.imagej.display.ImageDisplayService
Creates a new DataView wrapping the given data object.
createDataView(Data) - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
createDefaultFigure() - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
Creates a default figure of the type handled by this adapter.
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
createDefaultFigure() - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
 
createDisplay(ImagePlus) - Method in class net.imagej.legacy.translate.DisplayCreator
 
createDisplay(ImagePlus) - Method in class net.imagej.legacy.translate.ImageTranslator
Creates a ImageDisplay from an ImagePlus.
createDisplayWindow(Display<?>) - Method in class net.imagej.legacy.ui.LegacyUI
 
createDomainArray() - Method in class net.imagej.omero.OMEROFormat.Reader
 
createFFTOutput(Dimensions, T) - Method in class net.imagej.ops.filter.FilterNamespace
 
createFFTOutput(Dimensions, T, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
 
createFigure() - Method in class net.imagej.ui.swing.overlay.IJBezierTool
 
createFigure() - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
createFilterComputer(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.PadAndRichardsonLucy
create a richardson lucy filter
createFilterComputer(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
This function is called after the RAIs and FFTs are set up and create the frequency filter computer.
createFilterComputer(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFT
create a convolve filter computer
createFilterComputer(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.correlate.PadAndCorrelateFFT
create a correlation filter computer
createHandler(OutputStream) - Method in class net.imagej.updater.XMLFileWriter
 
createHandles(int) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
createHandles(int) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
createHandles(int) - Method in class net.imagej.ui.swing.overlay.PolygonFigure
 
createHandles(int) - Method in class net.imagej.ui.swing.overlay.PolylineFigure
 
createImageJColumn(TableDataColumn) - Static method in class net.imagej.omero.TableUtils
 
createImageJTable(TableDataColumn[]) - Static method in class net.imagej.omero.TableUtils
 
CreateImgFactoryFromImg<T> - Class in net.imagej.ops.create.imgFactory
Gets an ImgFactory for the given Img.
CreateImgFactoryFromImg() - Constructor for class net.imagej.ops.create.imgFactory.CreateImgFactoryFromImg
 
CreateImgFromDimsAndType<T extends NativeType<T>> - Class in net.imagej.ops.create.img
Creates an Img with the given Dimensions and NativeType.
CreateImgFromDimsAndType() - Constructor for class net.imagej.ops.create.img.CreateImgFromDimsAndType
 
CreateImgFromII<T extends NativeType<T>> - Class in net.imagej.ops.create.img
Create an Img from an IterableInterval using its type T.
CreateImgFromII() - Constructor for class net.imagej.ops.create.img.CreateImgFromII
 
CreateImgFromImg<T extends Type<T>> - Class in net.imagej.ops.create.img
Create an Img from another Img implementation using its Type and ImgFactory.
CreateImgFromImg() - Constructor for class net.imagej.ops.create.img.CreateImgFromImg
 
CreateImgFromInterval - Class in net.imagej.ops.create.img
Creates an Img from an Interval with no additional hints.
CreateImgFromInterval() - Constructor for class net.imagej.ops.create.img.CreateImgFromInterval
 
CreateImgFromRAI<T extends NativeType<T>> - Class in net.imagej.ops.create.img
Create an Img from a RandomAccessibleInterval using its type T.
CreateImgFromRAI() - Constructor for class net.imagej.ops.create.img.CreateImgFromRAI
 
CreateImgLabelingFromInterval<L,T extends IntegerType<T>> - Class in net.imagej.ops.create.imgLabeling
Creates an ImgLabeling from an Interval.
CreateImgLabelingFromInterval() - Constructor for class net.imagej.ops.create.imgLabeling.CreateImgLabelingFromInterval
 
createInEditor(String, String) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Extension point to override ImageJ 1.x' editor.
createInEditor(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks
Creates the given file in the registered legacy editor, if any.
createInEditor(String, String) - Method in class net.imagej.patcher.LegacyHooks
Extension point to override ImageJ 1.x' editor.
CreateKernel2D<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernel
This Op takes a 2-D array of explicit values and creates a simple image, e.g.
CreateKernel2D() - Constructor for class net.imagej.ops.create.kernel.CreateKernel2D
 
CreateKernel2ndDerivBiGaussDoubleType - Class in net.imagej.ops.create.kernelBiGauss
Creates 2nd derivative of an isotropic BiGauss kernel of type DoubleType, uses DefaultCreateKernel2ndDerivBiGauss to do the job.
CreateKernel2ndDerivBiGaussDoubleType() - Constructor for class net.imagej.ops.create.kernelBiGauss.CreateKernel2ndDerivBiGaussDoubleType
 
CreateKernelBiGaussDoubleType - Class in net.imagej.ops.create.kernelBiGauss
Creates an isotropic BiGauss kernel of type DoubleType, uses DefaultCreateKernelBiGauss to do the job.
CreateKernelBiGaussDoubleType() - Constructor for class net.imagej.ops.create.kernelBiGauss.CreateKernelBiGaussDoubleType
 
CreateKernelGaborComplexDoubleType - Class in net.imagej.ops.create.kernelGabor
Creates a Gabor kernel of type ComplexDoubleType, uses DefaultCreateKernelGabor to do the job.
CreateKernelGaborComplexDoubleType() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborComplexDoubleType
 
CreateKernelGaborDoubleType - Class in net.imagej.ops.create.kernelGabor
Creates a Gabor kernel of type DoubleType, uses DefaultCreateKernelGabor to do the job.
CreateKernelGaborDoubleType() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborDoubleType
 
CreateKernelGaborIsotropic<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelGabor
Creates an isotropic Gabor kernel, i.e., with one sigma for all axes, and a period vector.
CreateKernelGaborIsotropic() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropic
 
CreateKernelGaborIsotropicComplexDoubleType - Class in net.imagej.ops.create.kernelGabor
Creates an isotropic Gabor kernel of type ComplexDoubleType, uses DefaultCreateKernelGabor to do the job.
CreateKernelGaborIsotropicComplexDoubleType() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropicComplexDoubleType
 
CreateKernelGaborIsotropicDoubleType - Class in net.imagej.ops.create.kernelGabor
Creates an isotropic Gabor kernel of type DoubleType, uses DefaultCreateKernelGabor to do the job.
CreateKernelGaborIsotropicDoubleType() - Constructor for class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropicDoubleType
 
CreateKernelGaussDoubleType - Class in net.imagej.ops.create.kernelGauss
Creates a Gaussian kernel of type DoubleType.
CreateKernelGaussDoubleType() - Constructor for class net.imagej.ops.create.kernelGauss.CreateKernelGaussDoubleType
 
CreateKernelGaussSymmetric<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelGauss
Creates a symmetric Gaussian kernel.
CreateKernelGaussSymmetric() - Constructor for class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetric
 
CreateKernelGaussSymmetricDoubleType - Class in net.imagej.ops.create.kernelGauss
Creates a symmetric Gaussian kernel of type DoubleType.
CreateKernelGaussSymmetricDoubleType() - Constructor for class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetricDoubleType
 
CreateKernelLogDoubleType - Class in net.imagej.ops.create.kernelLog
Creates a log kernel of type DoubleType.
CreateKernelLogDoubleType() - Constructor for class net.imagej.ops.create.kernelLog.CreateKernelLogDoubleType
 
CreateKernelLogSymmetric<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelLog
Creates a Gaussian Kernel
CreateKernelLogSymmetric() - Constructor for class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetric
 
CreateKernelLogSymmetricDoubleType - Class in net.imagej.ops.create.kernelLog
Creates a symmetric log kernel of type DoubleType.
CreateKernelLogSymmetricDoubleType() - Constructor for class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetricDoubleType
 
CreateKernelSobel<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelSobel
Creates a separated sobel kernel.
CreateKernelSobel() - Constructor for class net.imagej.ops.create.kernelSobel.CreateKernelSobel
 
createLegacyImage(ImageDisplay) - Method in class net.imagej.legacy.translate.ImagePlusCreator
 
createLegacyImage(Dataset) - Method in class net.imagej.legacy.translate.ImagePlusCreator
 
createLegacyImage(Dataset, ImageDisplay) - Method in class net.imagej.legacy.translate.ImagePlusCreator
 
createLegacyImage(ImageDisplay) - Method in class net.imagej.legacy.translate.ImageTranslator
Creates an ImagePlus from a ImageDisplay.
createLegacyImage(Dataset) - Method in class net.imagej.legacy.translate.ImageTranslator
 
createLegacyImage(Dataset, ImageDisplay) - Method in class net.imagej.legacy.translate.ImageTranslator
 
CreateMask<T extends RealType<T>> - Class in net.imagej.plugins.commands.binary
Creates a new binary mask Dataset from an existing Dataset using the default thresholding method.
CreateMask() - Constructor for class net.imagej.plugins.commands.binary.CreateMask
 
CreateNamespace - Class in net.imagej.ops.create
The create namespace contains ops that create objects.
CreateNamespace() - Constructor for class net.imagej.ops.create.CreateNamespace
 
CreateNativeTypeFromClass<T extends NativeType<T>> - Class in net.imagej.ops.create.nativeType
Creates the NativeType given by the input Class.
CreateNativeTypeFromClass() - Constructor for class net.imagej.ops.create.nativeType.CreateNativeTypeFromClass
 
createNewImgPlus(Dataset, long[], AxisType[]) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Creates a new ImgPlus with specified dimensions and axes.
createNewImgPlus(ImgPlus<T>, long[], AxisType[]) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Creates a new ImgPlus with specified dimensions and axes.
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
createNewOverlay() - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
Creates a new overlay.
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
createNewOverlay() - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
 
createNormalizationImageSemiNonCirculant(Interval) - Method in class net.imagej.ops.deconvolve.NonCirculantNormalizationFactor
 
CreateObjectFromClass<T> - Class in net.imagej.ops.create.object
Instantiates an object given by the input Class.
CreateObjectFromClass() - Constructor for class net.imagej.ops.create.object.CreateObjectFromClass
 
createOMEROColumn(Column<?>, int) - Static method in class net.imagej.omero.TableUtils
 
createOutput(Img<T>) - Method in class net.imagej.ops.bufferfactories.ImgImgFactory
 
createOutput(Img<T>) - Method in class net.imagej.ops.bufferfactories.ImgImgSameTypeFactory
 
createOutput(Labeling<L>) - Method in class net.imagej.ops.bufferfactories.LabelingLabelingFactory
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToBit
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat32
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat64
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat32
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat64
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt16
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt32
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt64
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt8
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint12
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint128
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint16
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint2
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint32
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint4
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint64
 
createOutput(C) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint8
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToBit
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt16
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt32
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt64
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt8
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint12
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint128
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint16
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint2
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint32
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint4
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint64
 
createOutput(T) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint8
 
createOutput(ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyArrayImg
 
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyII
 
createOutput(Img<T>) - Method in class net.imagej.ops.copy.CopyImg
 
createOutput(ImgLabeling<L, T>) - Method in class net.imagej.ops.copy.CopyImgLabeling
 
createOutput(LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyLabelingMapping
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyRAI
 
createOutput(T) - Method in class net.imagej.ops.copy.CopyType
 
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
 
createOutput(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.features.lbp2d.DefaultLBP2D
 
createOutput(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.features.tamura2d.AbstractTamuraFeature
 
createOutput(IterableInterval<I>) - Method in class net.imagej.ops.features.zernike.AbstractZernikeFeature
 
createOutput(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
Create the output using the outFactory and outType if they exist.
createOutput(T) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
 
createOutput(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF
Create the output using the outFactory and outType if they exist.
createOutput(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFTF
Create the output using the outFactory and outType if they exist.
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.derivative.PartialDerivativeRAI
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DefaultDoG
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DoGSingleSigmas
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.DefaultGaussRAI
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.GaussRAISingleSigma
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.sobel.SobelRAI
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness
 
createOutput(I) - Method in class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
 
createOutput(I) - Method in class net.imagej.ops.geom.AbstractBoxivity
 
createOutput(I) - Method in class net.imagej.ops.geom.AbstractConvexity
 
createOutput(I) - Method in class net.imagej.ops.geom.AbstractSizeConvexHull
 
createOutput(I) - Method in class net.imagej.ops.geom.AbstractSolidity
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultCircularity
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultEccentricity
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultElongation
 
createOutput(Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsAngle
 
createOutput(Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameter
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMajorAxis
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultMinorAxis
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultPerimeterLength
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultRoundness
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultSizePolygon
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon
 
createOutput(Polygon2D) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountPolygon
 
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultCompactness
 
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
 
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
 
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
 
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultSphericity
 
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultSurfaceArea
 
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh
 
createOutput(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountMesh
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
 
createOutput(String) - Method in class net.imagej.ops.image.equation.DefaultEquation
 
createOutput(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
 
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.watershed.Watershed
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.watershed.WatershedBinary
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.watershed.WatershedBinarySingleSigma
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.watershed.WatershedSeeded
 
createOutput(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.AbstractImageMomentOp
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.labeling.cca.DefaultCCA
 
createOutput(ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.MergeLabeling
 
createOutput(Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.rotate.Rotate3d
 
createOutput(Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.rotate.Rotate3f
 
createOutput(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And
 
createOutput(T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Not
 
createOutput(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or
 
createOutput(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor
 
createOutput(I) - Method in class net.imagej.ops.logic.If
 
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And
 
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
 
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
 
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
 
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
 
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
 
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
 
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
createOutput(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
 
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
 
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
createOutput(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
createOutput(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
createOutput(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
createOutput(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
createOutput(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
 
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.close.ListClose
 
createOutput(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
 
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.dilate.ListDilate
 
createOutput(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.erode.DefaultErode
 
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.erode.ListErode
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesFunction
 
createOutput(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.fillHoles.DefaultFillHoles
 
createOutput(RandomAccessibleInterval<T>, Localizable) - Method in class net.imagej.ops.morphology.floodFill.DefaultFloodFill
 
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.open.ListOpen
 
createOutput(RandomAccessibleInterval<B>, Boolean) - Method in class net.imagej.ops.morphology.outline.Outline
 
createOutput(RandomAccessibleInterval<BitType>) - Method in class net.imagej.ops.morphology.thin.AbstractThin
 
createOutput(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.topHat.ListTopHat
 
createOutput(I1, I2) - Method in interface net.imagej.ops.special.BinaryOutputFactory
Create an output object given two inputs.
createOutput(I1, I2) - Method in class net.imagej.ops.special.chain.BHCFViaBHCF
 
createOutput(I) - Method in class net.imagej.ops.special.chain.UHCFViaUHCF
 
createOutput(I1) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
 
createOutput() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
 
createOutput() - Method in interface net.imagej.ops.special.NullaryOutputFactory
Create an output object.
createOutput(I) - Method in interface net.imagej.ops.special.UnaryOutputFactory
Create an output object given some input.
createOutput(I) - Method in class net.imagej.ops.stats.AbstractStatsOp
 
createOutput(Iterable<T>) - Method in class net.imagej.ops.stats.IterableMax
 
createOutput(Iterable<T>) - Method in class net.imagej.ops.stats.IterableMin
 
createOutput(IterableInterval<T>) - Method in class net.imagej.ops.threshold.AbstractApplyThresholdImg
 
createOutput(Histogram1d<T>) - Method in class net.imagej.ops.threshold.AbstractComputeThresholdHistogram
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
 
createOutput(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
 
CreateOutputFFTMethods<T> - Class in net.imagej.ops.filter.fft
Function that creates an output for FFTMethods FFT
CreateOutputFFTMethods() - Constructor for class net.imagej.ops.filter.fft.CreateOutputFFTMethods
 
createPixels(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession
 
createPixels(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession
Obtains a raw pixels store for writing to a new image which will be associated with the given metadata.
createPosition() - Method in class net.imagej.Extents
Returns a Position object that can be used to iterate these Extents.
createRadialPolynom(int, int, double[][]) - Static method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
Creates a radial polynom for zernike moment with order n and repitition m
createSampledImage(SamplingDefinition) - Method in class net.imagej.sampler.DefaultSamplerService
 
createSampledImage(SamplingDefinition) - Method in interface net.imagej.sampler.SamplerService
Creates an output ImageDisplay containing data from an input SamplingDefinition.
createSession(OMEROLocation) - Method in class net.imagej.omero.DefaultOMEROService
 
createSession(OMEROLocation) - Method in interface net.imagej.omero.OMEROService
Creates an OMEROSession.
CreateShortcut - Class in net.imagej.plugins.commands.app
This is a placeholder command for as yet unfinished Create Shortcut command.
CreateShortcut() - Constructor for class net.imagej.plugins.commands.app.CreateShortcut
 
createTypes(Type, Type, Type, Object...) - Static method in class net.imagej.ops.OpRef
Creates a new op reference.
createTypes(Collection<? extends Type>, Object...) - Static method in class net.imagej.ops.OpRef
Creates a new op reference.
createUser(String, String, String, String) - Method in class net.imagej.util.MediaWikiClient
 
createVariable() - Method in class net.imagej.types.BigComplex
Creates a new BigComplex initialized to (0,0).
createVariable() - Method in interface net.imagej.types.DataType
Returns a variable of the underlying NumericType wrapped by this DataType.
createVariable() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
createVariable() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
createVariable() - Method in class net.imagej.types.DataType16BitSignedInteger
 
createVariable() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
createVariable() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
createVariable() - Method in class net.imagej.types.DataType32BitSignedFloat
 
createVariable() - Method in class net.imagej.types.DataType32BitSignedInteger
 
createVariable() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
createVariable() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
createVariable() - Method in class net.imagej.types.DataType64BitSignedFloat
 
createVariable() - Method in class net.imagej.types.DataType64BitSignedInteger
 
createVariable() - Method in class net.imagej.types.DataType8BitSignedInteger
 
createVariable() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
createVariable() - Method in class net.imagej.types.DataTypeBoolean
 
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
createVariable() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
createVariable() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
createVariable() - Method in class net.imagej.types.PreciseFixedFloatType
 
createVariable() - Method in class net.imagej.types.UnboundedIntegerType
 
createWorker(IterableInterval<T>) - Method in class net.imagej.ops.create.img.CreateImgFromII
 
createWorker(Interval) - Method in class net.imagej.ops.create.img.CreateImgFromInterval
 
createWorker(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.create.img.CreateImgFromRAI
 
createWorker(double[], Integer) - Method in class net.imagej.ops.create.kernelBiGauss.CreateKernel2ndDerivBiGaussDoubleType
 
createWorker(double[], Integer) - Method in class net.imagej.ops.create.kernelBiGauss.CreateKernelBiGaussDoubleType
 
createWorker(double[], double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborComplexDoubleType
 
createWorker(double[], double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborDoubleType
 
createWorker(Double, double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropicComplexDoubleType
 
createWorker(Double, double[]) - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropicDoubleType
 
createWorker(double[]) - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussDoubleType
 
createWorker(Double) - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetricDoubleType
 
createWorker(double[]) - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogDoubleType
 
createWorker(Double) - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetricDoubleType
 
createWorker(Class<T>) - Method in class net.imagej.ops.create.nativeType.CreateNativeTypeFromClass
 
createWorker(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DoGVaryingSigmas
 
createWorker(IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction
 
createWorker(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesFunction
 
createWorker(I1, I2) - Method in interface net.imagej.ops.special.chain.DelegatingBinaryOp
 
createWorker(I) - Method in interface net.imagej.ops.special.chain.DelegatingUnaryOp
 
creationFinished(Figure) - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
creationTool - Variable in class net.imagej.ui.swing.overlay.ToolDelegator
 
Credentials(String, String, String) - Constructor for class net.imagej.plugins.uploaders.webdav.NetrcParser.Credentials
 
crop(Rectangle) - Method in class net.imagej.omero.legacy.LazyOverlay
 
crop(int, int) - Method in class net.imagej.omero.legacy.LazyOverlay
 
crop(int, int, int, int, int, int) - Method in class net.imagej.omero.legacy.LazyOverlay
 
crop(ImgPlus<T>, Interval) - Method in class net.imagej.ops.transform.TransformNamespace
Executes the "crop" operation on the given arguments.
crop(ImgPlus<T>, Interval, boolean) - Method in class net.imagej.ops.transform.TransformNamespace
Executes the "crop" operation on the given arguments.
crop(RandomAccessibleInterval<T>, Interval) - Method in class net.imagej.ops.transform.TransformNamespace
Executes the "crop" operation on the given arguments.
crop(RandomAccessibleInterval<T>, Interval, boolean) - Method in class net.imagej.ops.transform.TransformNamespace
Executes the "crop" operation on the given arguments.
cropAtCenter(RandomAccessibleInterval<T>, int[]) - Static method in class net.imagej.ops.coloc.ShuffledView
 
cropAtMax(RandomAccessibleInterval<T>, int[]) - Static method in class net.imagej.ops.coloc.ShuffledView
 
cropAtMin(RandomAccessibleInterval<T>, int[]) - Static method in class net.imagej.ops.coloc.ShuffledView
 
CropImage - Class in net.imagej.plugins.commands.imglib
Replaces the pixels of an input Dataset by cropping in X + Y using its currently selected region.
CropImage() - Constructor for class net.imagej.plugins.commands.imglib.CropImage
 
CropImgPlus<T extends Type<T>> - Class in net.imagej.ops.transform.crop
 
CropImgPlus() - Constructor for class net.imagej.ops.transform.crop.CropImgPlus
 
CropRAI<T> - Class in net.imagej.ops.transform.crop
 
CropRAI() - Constructor for class net.imagej.ops.transform.crop.CropRAI
 
csc(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Csc() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Csc
 
csch(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Csch() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Csch
 
cubeRoot(double) - Method in class net.imagej.ops.math.MathNamespace
 
cubeRoot(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
CubeRoot() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.CubeRoot
 
cuda - Variable in class net.imagej.tensorflow.TensorFlowVersion
 
cudnn - Variable in class net.imagej.tensorflow.TensorFlowVersion
 
current - Variable in class net.imagej.updater.FileObject
 
currentTimestamp() - Static method in class net.imagej.updater.util.UpdaterUtil
 
cursor() - Method in class net.imagej.DefaultDataset
 
cursor() - Method in class net.imagej.ImgPlus
 
cursor() - Method in class net.imagej.ops.slice.SlicesII
 
cursor() - Method in class net.imagej.table.ResultsImg
 
CursorBasedChunk - Class in net.imagej.ops.thread.chunker
 
CursorBasedChunk() - Constructor for class net.imagej.ops.thread.chunker.CursorBasedChunk
 
CustomOpEnvironment - Class in net.imagej.ops
A customized op execution environment.
CustomOpEnvironment(Context) - Constructor for class net.imagej.ops.CustomOpEnvironment
Creates an empty op context.
CustomOpEnvironment(OpEnvironment) - Constructor for class net.imagej.ops.CustomOpEnvironment
Creates an op context with the same configuration as the given parent environment.
CustomOpEnvironment(OpEnvironment, Collection<? extends OpInfo>) - Constructor for class net.imagej.ops.CustomOpEnvironment
Creates an op context with the same configuration as the given parent environment, plus the specified additional ops.
customOptionStart - Variable in class net.imagej.ui.swing.updater.ViewOptions
 
CYAN - Static variable in class net.imagej.display.ColorTables
 

D

d() - Method in class net.imagej.axis.Variable4Axis
 
D(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds
The partial sum D from C.
DASH_LINE_STYLE - Static variable in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
dashLineStyle - Static variable in class net.imagej.options.OptionsOverlay
 
Data - Interface in net.imagej
A data object is the superinterface for all types of N-dimensional data displayable in a cartesian space.
data() - Method in interface net.imagej.notebook.mime.MIMEObject
The encoded data.
data() - Method in class net.imagej.omero.roi.DefaultOMEROROICollection
 
data() - Method in class net.imagej.omero.roi.DefaultOMEROROIElement
 
data() - Method in class net.imagej.omero.roi.LazyROITree
 
data() - Method in interface net.imagej.roi.ROITree
 
DataCreatedEvent - Class in net.imagej.event
An event indicating a new Data has been created.
DataCreatedEvent(Data) - Constructor for class net.imagej.event.DataCreatedEvent
 
DataDeletedEvent - Class in net.imagej.event
An event indicating a Data has been deleted.
DataDeletedEvent(Data) - Constructor for class net.imagej.event.DataDeletedEvent
 
DataHarmonizer - Interface in net.imagej.legacy.translate
General interface for all data harmonizers.
DataModel() - Constructor for class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
DataModifiedEvent - Class in net.imagej.event
An event indicating a Data has been modified somehow.
DataModifiedEvent(Data) - Constructor for class net.imagej.event.DataModifiedEvent
 
DataRange - Class in net.imagej.autoscale
DataRange allows one to construct a real interval between two real values.
DataRange(double, double) - Constructor for class net.imagej.autoscale.DataRange
Constructs a data range given two end points of an interval.
DataRestructuredEvent - Class in net.imagej.event
An event indicating a Data's dimensional extents may have changed.
DataRestructuredEvent(Data) - Constructor for class net.imagej.event.DataRestructuredEvent
 
Dataset - Interface in net.imagej
Dataset is the primary image data structure in ImageJ.
dataset() - Method in class net.imagej.ImageJ
Gets this application context's DatasetService.
dataset - Variable in class net.imagej.plugins.commands.app.EasterEgg
 
DatasetBatchInputProvider - Class in net.imagej.batch.input
 
DatasetBatchInputProvider() - Constructor for class net.imagej.batch.input.DatasetBatchInputProvider
 
DatasetCreatedEvent - Class in net.imagej.event
An event indicating a new Dataset has been created.
DatasetCreatedEvent(Dataset) - Constructor for class net.imagej.event.DatasetCreatedEvent
 
DatasetDeletedEvent - Class in net.imagej.event
An event indicating a Dataset has been deleted.
DatasetDeletedEvent(Dataset) - Constructor for class net.imagej.event.DatasetDeletedEvent
 
DatasetFactory - Class in net.imagej
A factory which produces Datasets.
DatasetFactory(RealType<?>, Dataset, DatasetImgFactory.ImgCreator, Function<Img<?>, Dataset>) - Constructor for class net.imagej.DatasetFactory
 
DatasetFigureView - Class in net.imagej.ui.swing.viewer.image
A figure view that links an ImageJ DatasetView to a JHotDraw ImageFigure.
DatasetFigureView(SwingImageDisplayViewer, DatasetView) - Constructor for class net.imagej.ui.swing.viewer.image.DatasetFigureView
 
DatasetImgFactory<T> - Class in net.imagej
Base class for ImgFactory objects of Dataset implementations.
DatasetImgFactory(T, Dataset, DatasetImgFactory.ImgCreator) - Constructor for class net.imagej.DatasetImgFactory
 
DatasetMATLABConverter - Class in net.imagej.matlab
Converter implementation for converting MatlabNumericArray to Dataset.
DatasetMATLABConverter() - Constructor for class net.imagej.matlab.DatasetMATLABConverter
 
DatasetRestructuredEvent - Class in net.imagej.event
An event indicating a Dataset's dimensional extents may have changed.
DatasetRestructuredEvent(Dataset) - Constructor for class net.imagej.event.DatasetRestructuredEvent
 
DatasetRGBChangedEvent - Class in net.imagej.event
An event indicating a Dataset's RGB settings have changed.
DatasetRGBChangedEvent(Dataset) - Constructor for class net.imagej.event.DatasetRGBChangedEvent
 
DatasetService - Interface in net.imagej
Interface for service that works with Datasets.
DatasetToImagePlusConverter - Class in net.imagej.legacy.convert
Converter implementation for converting Dataset to a ImagePlus.
DatasetToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
DatasetToImgConverter - Class in net.imagej.convert
Simple Converter for unwrapping Datasets to their underlying Img.
DatasetToImgConverter() - Constructor for class net.imagej.convert.DatasetToImgConverter
 
DatasetToImgPlusConverter - Class in net.imagej.convert
Simple Converter for unwrapping Datasets to their underlying ImgPlus.
DatasetToImgPlusConverter() - Constructor for class net.imagej.convert.DatasetToImgPlusConverter
 
DatasetTypeChangedEvent - Class in net.imagej.event
An event indicating a Dataset's type has been changed.
DatasetTypeChangedEvent(Dataset) - Constructor for class net.imagej.event.DatasetTypeChangedEvent
 
DatasetUpdatedEvent - Class in net.imagej.event
An event indicating a Dataset's data has been updated.
DatasetUpdatedEvent(Dataset, boolean) - Constructor for class net.imagej.event.DatasetUpdatedEvent
 
DatasetUtils - Class in net.imagej.legacy.translate
Utility methods applicable to Datasets.
DatasetView - Interface in net.imagej.display
A linkage between a Dataset and a Display.
DatasetViewToHTMLConverter - Class in net.imagej.notebook.image
Converter from DatasetView to HTMLObject.
DatasetViewToHTMLConverter() - Constructor for class net.imagej.notebook.image.DatasetViewToHTMLConverter
 
dataToPanelCoords(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
dataToPanelCoords(RealCoords) - Method in interface net.imagej.display.ImageCanvas
Converts the given data coordinates into panel coordinates.
DataType<T extends NumericType<T>> - Interface in net.imagej.types
DataType represents information about pixel types.
DataType128BitSignedComplexFloat - Class in net.imagej.types
DataType definition for 128-bit complex float numbers.
DataType128BitSignedComplexFloat() - Constructor for class net.imagej.types.DataType128BitSignedComplexFloat
 
DataType12BitUnsignedInteger - Class in net.imagej.types
DataType definition for 12-bit unsigned integers.
DataType12BitUnsignedInteger() - Constructor for class net.imagej.types.DataType12BitUnsignedInteger
 
DataType16BitSignedInteger - Class in net.imagej.types
DataType definition for 16-bit signed integers.
DataType16BitSignedInteger() - Constructor for class net.imagej.types.DataType16BitSignedInteger
 
DataType16BitUnsignedInteger - Class in net.imagej.types
DataType definition for 16-bit unsigned integers.
DataType16BitUnsignedInteger() - Constructor for class net.imagej.types.DataType16BitUnsignedInteger
 
DataType1BitUnsignedInteger - Class in net.imagej.types
DataType definition for 1-bit unsigned integers.
DataType1BitUnsignedInteger() - Constructor for class net.imagej.types.DataType1BitUnsignedInteger
 
DataType32BitSignedFloat - Class in net.imagej.types
DataType definition for 32-bit floats.
DataType32BitSignedFloat() - Constructor for class net.imagej.types.DataType32BitSignedFloat
 
DataType32BitSignedInteger - Class in net.imagej.types
DataType definition for 32-bit signed integers.
DataType32BitSignedInteger() - Constructor for class net.imagej.types.DataType32BitSignedInteger
 
DataType32BitUnsignedInteger - Class in net.imagej.types
DataType definition for 32-bit unsigned integers.
DataType32BitUnsignedInteger() - Constructor for class net.imagej.types.DataType32BitUnsignedInteger
 
DataType64BitSignedComplexFloat - Class in net.imagej.types
DataType definition for 64-bit complex float numbers.
DataType64BitSignedComplexFloat() - Constructor for class net.imagej.types.DataType64BitSignedComplexFloat
 
DataType64BitSignedFloat - Class in net.imagej.types
DataType definition for 64-bit floats.
DataType64BitSignedFloat() - Constructor for class net.imagej.types.DataType64BitSignedFloat
 
DataType64BitSignedInteger - Class in net.imagej.types
DataType definition for 64-bit signed integers.
DataType64BitSignedInteger() - Constructor for class net.imagej.types.DataType64BitSignedInteger
 
DataType8BitSignedInteger - Class in net.imagej.types
DataType definition for 8-bit signed integers.
DataType8BitSignedInteger() - Constructor for class net.imagej.types.DataType8BitSignedInteger
 
DataType8BitUnsignedInteger - Class in net.imagej.types
DataType definition for 8-bit unsigned integers.
DataType8BitUnsignedInteger() - Constructor for class net.imagej.types.DataType8BitUnsignedInteger
 
DataTypeBoolean - Class in net.imagej.types
DataType definition for boolean.
DataTypeBoolean() - Constructor for class net.imagej.types.DataTypeBoolean
 
DataTypeService - Interface in net.imagej.types
Service interface that supports runtime discovery of and conversion between DataTypes.
DataTypeVariableBitSignedComplexFloat - Class in net.imagej.types
DataType definition for variable bit complex numbers.
DataTypeVariableBitSignedComplexFloat() - Constructor for class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
DataTypeVariableBitSignedFloat - Class in net.imagej.types
DataType definition for variable bit floats.
DataTypeVariableBitSignedFloat() - Constructor for class net.imagej.types.DataTypeVariableBitSignedFloat
 
DataTypeVariableBitSignedInteger - Class in net.imagej.types
DataType definition for variable bit signed integers.
DataTypeVariableBitSignedInteger() - Constructor for class net.imagej.types.DataTypeVariableBitSignedInteger
 
DataUpdatedEvent - Class in net.imagej.event
An event indicating a Data's data has been updated.
DataUpdatedEvent(Data) - Constructor for class net.imagej.event.DataUpdatedEvent
 
DataView - Interface in net.imagej.display
Interface for data views.
DataViewDeselectedEvent - Class in net.imagej.display.event
An event that indicates that a DataView is no longer selected.
DataViewDeselectedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewDeselectedEvent
 
DataViewEvent - Class in net.imagej.display.event
An event indicating something has happened to a DataView.
DataViewEvent(DataView) - Constructor for class net.imagej.display.event.DataViewEvent
 
DataViewSelectedEvent - Class in net.imagej.display.event
Event fired when a DataView becomes selected.
DataViewSelectedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewSelectedEvent
 
DataViewSelectionEvent - Class in net.imagej.display.event
An event that indicates that the selection status of a DataView has changed (i.e., it was either selected or deselected).
DataViewSelectionEvent(DataView, boolean) - Constructor for class net.imagej.display.event.DataViewSelectionEvent
 
DataViewUpdatedEvent - Class in net.imagej.display.event
This event signals that a DataView's appearance has changed.
DataViewUpdatedEvent(DataView) - Constructor for class net.imagej.display.event.DataViewUpdatedEvent
 
DbXmlFile() - Constructor for class net.imagej.updater.FilesUploader.DbXmlFile
 
deactivate(DrawingEditor) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
deactivateUpdateSite(UpdateSite) - Method in class net.imagej.updater.FilesCollection
Deactivates the given update site.
debug(String) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Logs a debug message (to be shown only in debug mode).
debug - Static variable in class net.imagej.launcher.ClassLauncher
 
debug(String) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
Debug() - Constructor for class net.imagej.legacy.LegacyCommandline.Debug
 
debug(String) - Method in class net.imagej.patcher.LegacyHooks
Logs a debug message (to be shown only in debug mode).
debug - Static variable in class net.imagej.patcher.MemoryProfiler
 
debug - Static variable in class net.imagej.patcher.PerformanceProfiler
 
debug(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
debug(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
debug(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
debug(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
debugLogin(String) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
dec() - Method in class net.imagej.types.PreciseFixedFloatType
 
dec() - Method in class net.imagej.types.UnboundedIntegerType
 
decode(byte[]) - Static method in class net.imagej.notebook.Images
Converts the given byte array into a BufferedImage.
deconvolve() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "deconvolve" namespace.
DeconvolveNamespace - Class in net.imagej.ops.deconvolve
The deconvolve namespace contains deconvolution operations.
DeconvolveNamespace() - Constructor for class net.imagej.ops.deconvolve.DeconvolveNamespace
 
decrementReferences() - Method in class net.imagej.AbstractData
 
decrementReferences() - Method in interface net.imagej.Data
Subtracts from the data object's reference count.
Default<I extends BooleanType<I>,O extends Type<O>> - Class in net.imagej.ops.logic
An Op that sets the output to the defaultVal iff the input is evaluated as false.
Default() - Constructor for class net.imagej.ops.logic.Default
 
DEFAULT_METHOD - Static variable in class net.imagej.plugins.commands.binary.Binarize
 
DEFAULT_UPDATE_SITE - Static variable in class net.imagej.updater.FilesCollection
 
DefaultAddDimensionView<T> - Class in net.imagej.ops.transform.addDimensionView
DefaultAddDimensionView() - Constructor for class net.imagej.ops.transform.addDimensionView.DefaultAddDimensionView
 
DefaultAnimationService - Class in net.imagej.animation
Default service for working with Animations.
DefaultAnimationService() - Constructor for class net.imagej.animation.DefaultAnimationService
 
DefaultASCII<T extends RealType<T>> - Class in net.imagej.ops.image.ascii
Generates an ASCII version of an image.
DefaultASCII() - Constructor for class net.imagej.ops.image.ascii.DefaultASCII
 
DefaultASM<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Angular Second Moment Haralick Feature
DefaultASM() - Constructor for class net.imagej.ops.features.haralick.DefaultASM
 
DefaultAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale
Computes a data range from the entire set of values in an IterableInterval.
DefaultAutoscaleMethod() - Constructor for class net.imagej.autoscale.DefaultAutoscaleMethod
 
DefaultAutoscaleService - Class in net.imagej.autoscale
Default service for working with autoscale methods.
DefaultAutoscaleService() - Constructor for class net.imagej.autoscale.DefaultAutoscaleService
 
DefaultAxisType - Class in net.imagej.axis
Default AxisType implementation.
DefaultAxisType(String) - Constructor for class net.imagej.axis.DefaultAxisType
Creates a non-spatial AxisType with the given label
DefaultAxisType(String, boolean) - Constructor for class net.imagej.axis.DefaultAxisType
Creates a new AxisType with the given label and spatial status.
DefaultBilateral<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.filter.bilateral
Performs a bilateral filter on an image.
DefaultBilateral() - Constructor for class net.imagej.ops.filter.bilateral.DefaultBilateral
 
DefaultBoundarySizeConvexHullPolygon - Class in net.imagej.ops.geom.geom2d
 
DefaultBoundarySizeConvexHullPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultBoundarySizeConvexHullPolygon
 
DefaultBoundingBox - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.boundingBox.
DefaultBoundingBox() - Constructor for class net.imagej.ops.geom.geom2d.DefaultBoundingBox
 
DefaultBoxivityMesh - Class in net.imagej.ops.geom.geom3d
 
DefaultBoxivityMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultBoxivityMesh
 
DefaultBoxivityPolygon - Class in net.imagej.ops.geom.geom2d
 
DefaultBoxivityPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultBoxivityPolygon
 
DefaultCalibratedRealInterval - Class in net.imagej.interval
Default implementation of CalibratedRealInterval.
DefaultCalibratedRealInterval(RealInterval) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedRealInterval(RealInterval, CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedRealInterval(RealInterval, List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedRealInterval(double[]) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedRealInterval(double[], CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedRealInterval(double[], List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedRealInterval(double[], double[]) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedRealInterval(double[], double[], CalibratedAxis...) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedRealInterval(double[], double[], List<CalibratedAxis>) - Constructor for class net.imagej.interval.DefaultCalibratedRealInterval
 
DefaultCalibratedSpace - Class in net.imagej.space
Default implementation of CalibratedSpace.
DefaultCalibratedSpace(int) - Constructor for class net.imagej.space.DefaultCalibratedSpace
Constructs a new calibrated space of the given dimensionality, with default IdentityAxis axes of unknown type (Axes.unknown()).
DefaultCalibratedSpace(CalibratedAxis...) - Constructor for class net.imagej.space.DefaultCalibratedSpace
Constructs a new calibrated space with the given axes.
DefaultCalibratedSpace(List<CalibratedAxis>) - Constructor for class net.imagej.space.DefaultCalibratedSpace
Constructs a new calibrated space with the given axes.
DefaultCCA<T extends IntegerType<T>,L,I extends IntegerType<I>> - Class in net.imagej.ops.labeling.cca
Default Implementation wrapping ConnectedComponents of ImgLib2-algorithms.
DefaultCCA() - Constructor for class net.imagej.ops.labeling.cca.DefaultCCA
 
DefaultCenterOfGravity<T extends RealType<T>> - Class in net.imagej.ops.geom
This Op computes the center of gravity of a IterableRegion (Label).
DefaultCenterOfGravity() - Constructor for class net.imagej.ops.geom.DefaultCenterOfGravity
 
DefaultCentralMoment00<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment00.
DefaultCentralMoment00() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment00
 
DefaultCentralMoment01<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment01 directly.
DefaultCentralMoment01() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment01
 
DefaultCentralMoment02<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment02.
DefaultCentralMoment02() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment02
 
DefaultCentralMoment03<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment03 using
DefaultCentralMoment03() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment03
 
DefaultCentralMoment10<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment10 directly.
DefaultCentralMoment10() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment10
 
DefaultCentralMoment11<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment11.
DefaultCentralMoment11() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment11
 
DefaultCentralMoment12<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment12.
DefaultCentralMoment12() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment12
 
DefaultCentralMoment20<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment20.
DefaultCentralMoment20() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment20
 
DefaultCentralMoment21<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment21.
DefaultCentralMoment21() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment21
 
DefaultCentralMoment30<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment30.
DefaultCentralMoment30() - Constructor for class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment30
 
DefaultChunker - Class in net.imagej.ops.thread.chunker
Simple default implementation of a ChunkerOp.
DefaultChunker() - Constructor for class net.imagej.ops.thread.chunker.DefaultChunker
 
DefaultCircularity - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.circularity.
DefaultCircularity() - Constructor for class net.imagej.ops.geom.geom2d.DefaultCircularity
 
DefaultClusterPromenence<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Cluster Promenence Haralick Feature
DefaultClusterPromenence() - Constructor for class net.imagej.ops.features.haralick.DefaultClusterPromenence
 
DefaultClusterShade<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Cluster Shade Haralick Feature
DefaultClusterShade() - Constructor for class net.imagej.ops.features.haralick.DefaultClusterShade
 
DefaultCoarsenessFeature<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d
Implementation of Tamura's Coarseness feature
DefaultCoarsenessFeature() - Constructor for class net.imagej.ops.features.tamura2d.DefaultCoarsenessFeature
 
DefaultCollapse2CompositeIntervalView<T> - Class in net.imagej.ops.transform.collapseView
DefaultCollapse2CompositeIntervalView() - Constructor for class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeIntervalView
 
DefaultCollapse2CompositeView<T> - Class in net.imagej.ops.transform.collapseView
DefaultCollapse2CompositeView() - Constructor for class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeView
 
DefaultCollapseNumeric2CompositeIntervalView<T extends NumericType<T>> - Class in net.imagej.ops.transform.collapseNumericView
DefaultCollapseNumeric2CompositeIntervalView() - Constructor for class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeIntervalView
 
DefaultCollapseNumeric2CompositeView<T extends NumericType<T>> - Class in net.imagej.ops.transform.collapseNumericView
DefaultCollapseNumeric2CompositeView() - Constructor for class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeView
 
DefaultCollapseReal2CompositeIntervalView<T extends RealType<T>> - Class in net.imagej.ops.transform.collapseRealView
DefaultCollapseReal2CompositeIntervalView() - Constructor for class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeIntervalView
 
DefaultCollapseReal2CompositeView<T extends RealType<T>> - Class in net.imagej.ops.transform.collapseRealView
DefaultCollapseReal2CompositeView() - Constructor for class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeView
 
DefaultCompactness - Class in net.imagej.ops.geom.geom3d
Generic implementation of Ops.Geometric.Compactness.
DefaultCompactness() - Constructor for class net.imagej.ops.geom.geom3d.DefaultCompactness
 
DefaultComputeFFTSize - Class in net.imagej.ops.filter.fftSize
Op that calculates FFT fast sizes according to the following logic.
DefaultComputeFFTSize() - Constructor for class net.imagej.ops.filter.fftSize.DefaultComputeFFTSize
 
DefaultConcatenateView<T> - Class in net.imagej.ops.transform.concatenateView
DefaultConcatenateView() - Constructor for class net.imagej.ops.transform.concatenateView.DefaultConcatenateView
 
DefaultContour<B extends BooleanType<B>> - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.contour.
DefaultContour() - Constructor for class net.imagej.ops.geom.geom2d.DefaultContour
 
DefaultContrast<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of texture contrast haralick feature.
DefaultContrast() - Constructor for class net.imagej.ops.features.haralick.DefaultContrast
 
DefaultContrastFeature<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d
Default implementation of tamura feature contrast.
DefaultContrastFeature() - Constructor for class net.imagej.ops.features.tamura2d.DefaultContrastFeature
 
DefaultConvexHull2D - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.convexHull.
DefaultConvexHull2D() - Constructor for class net.imagej.ops.geom.geom2d.DefaultConvexHull2D
 
DefaultConvexHull3D - Class in net.imagej.ops.geom.geom3d
This quickhull implementation is based on the paper "The Quickhull Algorithm for Convex Hulls" by Barber, Dobkin and Huhdanpaa (http://dpd.cs.princeton.edu/Papers/BarberDobkinHuhdanpaa.pdf).
DefaultConvexHull3D() - Constructor for class net.imagej.ops.geom.geom3d.DefaultConvexHull3D
 
DefaultConvexityMesh - Class in net.imagej.ops.geom.geom3d
 
DefaultConvexityMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultConvexityMesh
 
DefaultConvexityPolygon - Class in net.imagej.ops.geom.geom2d
 
DefaultConvexityPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultConvexityPolygon
 
DefaultCoordinatesEquation<T extends RealType<T>,N extends Number> - Class in net.imagej.ops.image.equation
An equation operation which computes image values from coordinates using another op.
DefaultCoordinatesEquation() - Constructor for class net.imagej.ops.image.equation.DefaultCoordinatesEquation
 
DefaultCorrelation<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of texture correlation haralick feature based on http://earlglynn.github.io/RNotes/package/EBImage/Haralick-Textural-Features.html .
DefaultCorrelation() - Constructor for class net.imagej.ops.features.haralick.DefaultCorrelation
 
DefaultCreateImgFactory<T extends NativeType<T>> - Class in net.imagej.ops.create.imgFactory
Default implementation of the "create.imgFactory" op.
DefaultCreateImgFactory() - Constructor for class net.imagej.ops.create.imgFactory.DefaultCreateImgFactory
 
DefaultCreateImgLabeling<L,T extends IntegerType<T>> - Class in net.imagej.ops.create.imgLabeling
Default implementation of the "create.imgLabeling" op.
DefaultCreateImgLabeling() - Constructor for class net.imagej.ops.create.imgLabeling.DefaultCreateImgLabeling
 
DefaultCreateImgPlus<T> - Class in net.imagej.ops.create.imgPlus
Default implementation of the "create.imgPlus" op.
DefaultCreateImgPlus() - Constructor for class net.imagej.ops.create.imgPlus.DefaultCreateImgPlus
 
DefaultCreateIntegerType - Class in net.imagej.ops.create.integerType
Create an IntegerType with at least maxValue maximum.
DefaultCreateIntegerType() - Constructor for class net.imagej.ops.create.integerType.DefaultCreateIntegerType
 
DefaultCreateKernel2ndDerivBiGauss<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelBiGauss
Creates 2nd derivative of an isotropic BiGauss kernel with the pair of sigmas specification.
DefaultCreateKernel2ndDerivBiGauss() - Constructor for class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernel2ndDerivBiGauss
 
DefaultCreateKernelBiGauss<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelBiGauss
Creates an isotropic BiGauss kernel with the pair of sigmas specification.
DefaultCreateKernelBiGauss() - Constructor for class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernelBiGauss
 
DefaultCreateKernelGabor<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelGabor
Creates a Gabor kernel with specifications for individual sigma per axis, and a period vector.
DefaultCreateKernelGabor() - Constructor for class net.imagej.ops.create.kernelGabor.DefaultCreateKernelGabor
 
DefaultCreateKernelGauss<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelGauss
Creates a Gaussian Kernel
DefaultCreateKernelGauss() - Constructor for class net.imagej.ops.create.kernelGauss.DefaultCreateKernelGauss
 
DefaultCreateKernelGibsonLanni<T extends ComplexType<T> & NativeType<T>> - Class in net.imagej.ops.create.kernelDiffraction
Creates a Gibson Lanni Kernel.
DefaultCreateKernelGibsonLanni() - Constructor for class net.imagej.ops.create.kernelDiffraction.DefaultCreateKernelGibsonLanni
 
DefaultCreateKernelLog<T extends ComplexType<T>> - Class in net.imagej.ops.create.kernelLog
Laplacian of Gaussian filter ported from fiji.plugin.trackmate.detection.DetectionUtil.
DefaultCreateKernelLog() - Constructor for class net.imagej.ops.create.kernelLog.DefaultCreateKernelLog
 
DefaultCreateLabelingMapping<L> - Class in net.imagej.ops.create.labelingMapping
Create a LabelingMapping which can store at least maxNumSets different Sets
DefaultCreateLabelingMapping() - Constructor for class net.imagej.ops.create.labelingMapping.DefaultCreateLabelingMapping
 
DefaultCreateNativeType - Class in net.imagej.ops.create.nativeType
Default implementation of the "create.nativeType" op.
DefaultCreateNativeType() - Constructor for class net.imagej.ops.create.nativeType.DefaultCreateNativeType
 
DefaultDataset - Class in net.imagej
Default implementation of Dataset.
DefaultDataset(Context, ImgPlus<? extends RealType<?>>) - Constructor for class net.imagej.DefaultDataset
 
DefaultDatasetService - Class in net.imagej
Default service for working with Datasets.
DefaultDatasetService() - Constructor for class net.imagej.DefaultDatasetService
 
DefaultDatasetView - Class in net.imagej.display
A view into a Dataset, for use with a ImageDisplay.
DefaultDatasetView() - Constructor for class net.imagej.display.DefaultDatasetView
 
DefaultDataTypeService - Class in net.imagej.types
The default implementation of the DataTypeService.
DefaultDataTypeService() - Constructor for class net.imagej.types.DefaultDataTypeService
 
DefaultDerivativeGauss<T extends RealType<T>> - Class in net.imagej.ops.filter.derivativeGauss
Performs the 2-D partial derivative Gaussian kernel convolutions on an image, at a particular point.
DefaultDerivativeGauss() - Constructor for class net.imagej.ops.filter.derivativeGauss.DefaultDerivativeGauss
 
DefaultDetectJunctions - Class in net.imagej.ops.segment.detectJunctions
Finds the junctions between a ArrayList of WritablePolyline, intended to be used optionally after running DefaultDetectRidges but applicable to all groups of polylines.
DefaultDetectJunctions() - Constructor for class net.imagej.ops.segment.detectJunctions.DefaultDetectJunctions
 
DefaultDetectRidges<T extends RealType<T>> - Class in net.imagej.ops.segment.detectRidges
Performs the Ridge Detection algorithm on a 2-Dimensional, gray-scale image.
DefaultDetectRidges() - Constructor for class net.imagej.ops.segment.detectRidges.DefaultDetectRidges
 
DefaultDifferenceEntropy<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Difference Entropy Haralick Feature
DefaultDifferenceEntropy() - Constructor for class net.imagej.ops.features.haralick.DefaultDifferenceEntropy
 
DefaultDifferenceVariance<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Difference Variance Haralick Feature
DefaultDifferenceVariance() - Constructor for class net.imagej.ops.features.haralick.DefaultDifferenceVariance
 
DefaultDilate<T extends RealType<T>> - Class in net.imagej.ops.morphology.dilate
Computes the dilation of a RandomAccessibleInterval using a single Shape.
DefaultDilate() - Constructor for class net.imagej.ops.morphology.dilate.DefaultDilate
 
DefaultDirectionalityFeature<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d
Implementation of Tamura's Directionality Feature
DefaultDirectionalityFeature() - Constructor for class net.imagej.ops.features.tamura2d.DefaultDirectionalityFeature
 
DefaultDistanceTransform<B extends BooleanType<B>,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform
Computes a distance transform, i.e.
DefaultDistanceTransform() - Constructor for class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
 
DefaultDistanceTransformCalibration<B extends BooleanType<B>,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform
Computes a distance transform, i.e.
DefaultDistanceTransformCalibration() - Constructor for class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
 
DefaultDoG<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.dog
Low-level difference of Gaussians (DoG) implementation which leans on other ops to do the work.
DefaultDoG() - Constructor for class net.imagej.ops.filter.dog.DefaultDoG
 
DefaultDropSingletonDimensionsView<T> - Class in net.imagej.ops.transform.dropSingletonDimensionsView
DefaultDropSingletonDimensionsView() - Constructor for class net.imagej.ops.transform.dropSingletonDimensionsView.DefaultDropSingletonDimensionsView
 
DefaultEccentricity - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.eccentricity.
DefaultEccentricity() - Constructor for class net.imagej.ops.geom.geom2d.DefaultEccentricity
 
DefaultElongation - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.mainElongation based on http://www.math.uci.edu/icamp/summer/research_11/park/ shape_descriptors_survey.pdf.
DefaultElongation() - Constructor for class net.imagej.ops.geom.geom2d.DefaultElongation
 
DefaultEntropy<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Entropy Haralick Feature Definition: -( sum_{i=1}^q sum_{j=1}^q c(i,j) log(c(i,j)) )
DefaultEntropy() - Constructor for class net.imagej.ops.features.haralick.DefaultEntropy
 
DefaultEquation<T extends RealType<T>> - Class in net.imagej.ops.image.equation
Computes an image using an equation.
DefaultEquation() - Constructor for class net.imagej.ops.image.equation.DefaultEquation
 
DefaultErode<T extends RealType<T>> - Class in net.imagej.ops.morphology.erode
Computes the erosion of a RandomAccessibleInterval using a single Shape.
DefaultErode() - Constructor for class net.imagej.ops.morphology.erode.DefaultErode
 
DefaultEval - Class in net.imagej.ops.eval
Evaluates an expression.
DefaultEval() - Constructor for class net.imagej.ops.eval.DefaultEval
 
DefaultExtendBorderView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendBorderView
DefaultExtendBorderView() - Constructor for class net.imagej.ops.transform.extendBorderView.DefaultExtendBorderView
 
DefaultExtendMirrorDoubleView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendMirrorDoubleView
DefaultExtendMirrorDoubleView() - Constructor for class net.imagej.ops.transform.extendMirrorDoubleView.DefaultExtendMirrorDoubleView
 
DefaultExtendMirrorSingleView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendMirrorSingleView
DefaultExtendMirrorSingleView() - Constructor for class net.imagej.ops.transform.extendMirrorSingleView.DefaultExtendMirrorSingleView
 
DefaultExtendPeriodicView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendPeriodicView
DefaultExtendPeriodicView() - Constructor for class net.imagej.ops.transform.extendPeriodicView.DefaultExtendPeriodicView
 
DefaultExtendRandomView<T extends RealType<T>,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendRandomView
DefaultExtendRandomView() - Constructor for class net.imagej.ops.transform.extendRandomView.DefaultExtendRandomView
 
DefaultExtendValueView<T extends Type<T>,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendValueView
DefaultExtendValueView() - Constructor for class net.imagej.ops.transform.extendValueView.DefaultExtendValueView
 
DefaultExtendView<T,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendView
DefaultExtendView() - Constructor for class net.imagej.ops.transform.extendView.DefaultExtendView
 
DefaultExtendZeroView<T extends NumericType<T>,F extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.transform.extendZeroView
DefaultExtendZeroView() - Constructor for class net.imagej.ops.transform.extendZeroView.DefaultExtendZeroView
 
DefaultExtractHolesComputer<T extends BooleanType<T>> - Class in net.imagej.ops.morphology.extractHoles
Extracts the holes from a binary image.
DefaultExtractHolesComputer() - Constructor for class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesComputer
 
DefaultExtractHolesFunction<T extends BooleanType<T>> - Class in net.imagej.ops.morphology.extractHoles
 
DefaultExtractHolesFunction() - Constructor for class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesFunction
 
defaultFactory - Static variable in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
OutOfBoundsFactory that return False as value for all the pixel that are out of the image space.
DefaultFeretsAngle - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.feretsAngle.
DefaultFeretsAngle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultFeretsAngle
 
DefaultFeretsDiameter - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.feretsDiameter.
DefaultFeretsDiameter() - Constructor for class net.imagej.ops.geom.geom2d.DefaultFeretsDiameter
 
DefaultFeretsDiameterForAngle - Class in net.imagej.ops.geom.geom2d
Ferets Diameter for a certain angle.
DefaultFeretsDiameterForAngle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle
 
DefaultFill<T extends Type<T>> - Class in net.imagej.ops.image.fill
Fill an IterableInterval with some constant value.
DefaultFill() - Constructor for class net.imagej.ops.image.fill.DefaultFill
 
DefaultFillHoles<T extends BooleanType<T>> - Class in net.imagej.ops.morphology.fillHoles
Fills the holes of a BooleanType image.
DefaultFillHoles() - Constructor for class net.imagej.ops.morphology.fillHoles.DefaultFillHoles
 
DefaultFlatIterableView<T> - Class in net.imagej.ops.transform.flatIterableView
DefaultFlatIterableView() - Constructor for class net.imagej.ops.transform.flatIterableView.DefaultFlatIterableView
 
DefaultFloodFill<T extends Type<T> & Comparable<T>> - Class in net.imagej.ops.morphology.floodFill
 
DefaultFloodFill() - Constructor for class net.imagej.ops.morphology.floodFill.DefaultFloodFill
 
DefaultFrangi<T extends RealType<T>,U extends RealType<U>> - Class in net.imagej.ops.filter.vesselness
Input is a 2- or 3-dimensional grayscales image.
DefaultFrangi() - Constructor for class net.imagej.ops.filter.vesselness.DefaultFrangi
 
DefaultGaussRA<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.gauss
Gaussian filter, wrapping Gauss3 of imglib2-algorithms.
DefaultGaussRA() - Constructor for class net.imagej.ops.filter.gauss.DefaultGaussRA
 
DefaultGaussRAI<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.gauss
Gaussian filter, wrapping Gauss3 of imglib2-algorithms.
DefaultGaussRAI() - Constructor for class net.imagej.ops.filter.gauss.DefaultGaussRAI
 
DefaultGeometricMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.geometricMean using stats.size and stats.sumOfLogs.
DefaultGeometricMean() - Constructor for class net.imagej.ops.stats.DefaultGeometricMean
 
DefaultHarmonicMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.harmonicMean using stats.size and stats.sumOfInverses.
DefaultHarmonicMean() - Constructor for class net.imagej.ops.stats.DefaultHarmonicMean
 
DefaultHuMoment1<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu
Op to calculate the imageMoments.huMoment1.
DefaultHuMoment1() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment1
 
DefaultHuMoment2<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu
Op to calculate the imageMoments.huMoment2.
DefaultHuMoment2() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment2
 
DefaultHuMoment3<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu
Op to calculate the imageMoments.huMoment3.
DefaultHuMoment3() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment3
 
DefaultHuMoment4<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu
Op to calculate the imageMoments.huMoment4.
DefaultHuMoment4() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment4
 
DefaultHuMoment5<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu
Op to calculate the imageMoments.huMoment5.
DefaultHuMoment5() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment5
 
DefaultHuMoment6<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu
Op to calculate the imageMoments.huMoment6.
DefaultHuMoment6() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment6
 
DefaultHuMoment7<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.hu
Op to calculate the imageMoments.huMoment7.
DefaultHuMoment7() - Constructor for class net.imagej.ops.imagemoments.hu.DefaultHuMoment7
 
DefaultHyperSliceView<T> - Class in net.imagej.ops.transform.hyperSliceView
DefaultHyperSliceView() - Constructor for class net.imagej.ops.transform.hyperSliceView.DefaultHyperSliceView
 
DefaultICM1<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Information Measure of Correlation 1 Haralick Feature
DefaultICM1() - Constructor for class net.imagej.ops.features.haralick.DefaultICM1
 
DefaultICM2<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Information Measure of Correlation 2 Haralick Feature
DefaultICM2() - Constructor for class net.imagej.ops.features.haralick.DefaultICM2
 
DefaultIdentity<A> - Class in net.imagej.ops.identity
Default implementation of the IdentityOp op.
DefaultIdentity() - Constructor for class net.imagej.ops.identity.DefaultIdentity
 
DefaultIFDM<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Inverse Difference Moment Haralick Feature based on http://www.uio.no/studier/emner/matnat/ifi/INF4300/h08/undervisningsmateriale/glcm.pdf .
DefaultIFDM() - Constructor for class net.imagej.ops.features.haralick.DefaultIFDM
 
DefaultImageCanvas - Class in net.imagej.display
The DefaultImageCanvas maintains a viewport, a zoom scale and a center coordinate that it uses to map viewport pixels to display coordinates.
DefaultImageCanvas(ImageDisplay) - Constructor for class net.imagej.display.DefaultImageCanvas
 
DefaultImageDisplay - Class in net.imagej.display
Default implementation of ImageDisplay.
DefaultImageDisplay() - Constructor for class net.imagej.display.DefaultImageDisplay
 
DefaultImageDisplayService - Class in net.imagej.display
Default service for working with ImageDisplays.
DefaultImageDisplayService() - Constructor for class net.imagej.display.DefaultImageDisplayService
 
DefaultImageJMATLABService - Class in net.imagej.matlab
Default ImageJMATLABService implementation.
DefaultImageJMATLABService() - Constructor for class net.imagej.matlab.DefaultImageJMATLABService
 
DefaultImageJServerService - Class in net.imagej.server
Default implementation of ImageJServerService.
DefaultImageJServerService() - Constructor for class net.imagej.server.DefaultImageJServerService
 
DefaultImageJUIService - Class in net.imagej.ui
Default service for managing ImageJ user interfaces.
DefaultImageJUIService() - Constructor for class net.imagej.ui.DefaultImageJUIService
 
DefaultImagePlusDisplay - Class in net.imagej.legacy.display
Default ImagePlusDisplay implementation.
DefaultImagePlusDisplay() - Constructor for class net.imagej.legacy.display.DefaultImagePlusDisplay
 
DefaultImgPlusService - Class in net.imagej
This class allows one to obtain a more specifically typed ImgPlus based on the actual backing type of the data.
DefaultImgPlusService() - Constructor for class net.imagej.DefaultImgPlusService
 
DefaultInertiaTensor3D<B extends BooleanType<B>> - Class in net.imagej.ops.geom.geom3d
This Op computes the 2nd multi variate of a IterableRegion (Label).
DefaultInertiaTensor3D() - Constructor for class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
 
DefaultInertiaTensor3DMesh - Class in net.imagej.ops.geom.geom3d
This Op computes the 2nd multi variate of a IterableRegion (Label).
DefaultInertiaTensor3DMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
 
DefaultIntegralImg<I extends RealType<I>> - Class in net.imagej.ops.image.integral
n-dimensional integral image that stores sums using RealType.
DefaultIntegralImg() - Constructor for class net.imagej.ops.image.integral.DefaultIntegralImg
 
DefaultInterpolateView<I extends EuclideanSpace,T> - Class in net.imagej.ops.transform.interpolateView
DefaultInterpolateView() - Constructor for class net.imagej.ops.transform.interpolateView.DefaultInterpolateView
 
DefaultIntervalView<T> - Class in net.imagej.ops.transform.intervalView
DefaultIntervalView() - Constructor for class net.imagej.ops.transform.intervalView.DefaultIntervalView
 
DefaultInvertAxisView<T> - Class in net.imagej.ops.transform.invertAxisView
DefaultInvertAxisView() - Constructor for class net.imagej.ops.transform.invertAxisView.DefaultInvertAxisView
 
DefaultJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
The default adapter handles any kind of overlay.
DefaultJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
DefaultJoin2Computers<A,B,C> - Class in net.imagej.ops.join
Joins two UnaryComputerOps.
DefaultJoin2Computers() - Constructor for class net.imagej.ops.join.DefaultJoin2Computers
 
DefaultJoin2Inplaces<A> - Class in net.imagej.ops.join
Joins two UnaryInplaceOps.
DefaultJoin2Inplaces() - Constructor for class net.imagej.ops.join.DefaultJoin2Inplaces
 
DefaultJoinComputerAndInplace<A,B> - Class in net.imagej.ops.join
DefaultJoinComputerAndInplace() - Constructor for class net.imagej.ops.join.DefaultJoinComputerAndInplace
 
DefaultJoinInplaceAndComputer<A,B> - Class in net.imagej.ops.join
DefaultJoinInplaceAndComputer() - Constructor for class net.imagej.ops.join.DefaultJoinInplaceAndComputer
 
DefaultJoinNComputers<A> - Class in net.imagej.ops.join
Joins a list of UnaryComputerOps.
DefaultJoinNComputers() - Constructor for class net.imagej.ops.join.DefaultJoinNComputers
 
DefaultJoinNInplaces<A> - Class in net.imagej.ops.join
Joins a list of UnaryInplaceOps.
DefaultJoinNInplaces() - Constructor for class net.imagej.ops.join.DefaultJoinNInplaces
 
DefaultJsonService - Class in net.imagej.server.services
Service that handle customized JSON serialization and deserialization.
DefaultJsonService(ObjectService) - Constructor for class net.imagej.server.services.DefaultJsonService
Constructs and initializes a JsonService with an ObjectService.
DefaultKurtosis<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.kurtosis using stats.stdDev and stats.moment4AboutMean.
DefaultKurtosis() - Constructor for class net.imagej.ops.stats.DefaultKurtosis
 
DefaultLBP2D<I extends RealType<I>> - Class in net.imagej.ops.features.lbp2d
Default implementation of 2d local binary patterns
DefaultLBP2D() - Constructor for class net.imagej.ops.features.lbp2d.DefaultLBP2D
 
DefaultLegacyEditor - Class in net.imagej.legacy.plugin
The default LegacyEditor plugin.
DefaultLegacyEditor() - Constructor for class net.imagej.legacy.plugin.DefaultLegacyEditor
 
DefaultLegacyHooks - Class in net.imagej.legacy
The LegacyHooks encapsulating an active LegacyService for use within the patched ImageJ 1.x.
DefaultLegacyHooks(LegacyService) - Constructor for class net.imagej.legacy.DefaultLegacyHooks
 
DefaultLegacyHooks(LegacyService, IJ1Helper) - Constructor for class net.imagej.legacy.DefaultLegacyHooks
 
DefaultLegacyOpener - Class in net.imagej.legacy.plugin
The default LegacyOpener plugin.
DefaultLegacyOpener() - Constructor for class net.imagej.legacy.plugin.DefaultLegacyOpener
 
DefaultLinearAxis - Class in net.imagej.axis
Default implementation of LinearAxis.
DefaultLinearAxis() - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a default LinearAxis.
DefaultLinearAxis(double) - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a LinearAxis of specified scale.
DefaultLinearAxis(double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a LinearAxis of specified scale and origin.
DefaultLinearAxis(AxisType) - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a LinearAxis of specified type.
DefaultLinearAxis(AxisType, double) - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a LinearAxis of specified type and scale.
DefaultLinearAxis(AxisType, double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a LinearAxis of specified type, scale, and origin.
DefaultLinearAxis(AxisType, String) - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a LinearAxis of specified type and unit.
DefaultLinearAxis(AxisType, String, double) - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a LinearAxis of specified type, unit, and scale.
DefaultLinearAxis(AxisType, String, double, double) - Constructor for class net.imagej.axis.DefaultLinearAxis
Construct a LinearAxis of specified type, unit, scale, and origin.
DefaultLinearSpace - Class in net.imagej.space
Default implementation of LinearSpace.
DefaultLinearSpace(int) - Constructor for class net.imagej.space.DefaultLinearSpace
 
DefaultLinearSpace(LinearAxis...) - Constructor for class net.imagej.space.DefaultLinearSpace
 
DefaultLinearSpace(List<LinearAxis>) - Constructor for class net.imagej.space.DefaultLinearSpace
 
DefaultLoopComputer<I> - Class in net.imagej.ops.loop
Applies a UnaryComputerOp multiple times to an image.
DefaultLoopComputer() - Constructor for class net.imagej.ops.loop.DefaultLoopComputer
 
DefaultLoopInplace<A> - Class in net.imagej.ops.loop
Default implementation of a LoopInplace.
DefaultLoopInplace() - Constructor for class net.imagej.ops.loop.DefaultLoopInplace
 
DefaultLUTService - Class in net.imagej.lut
The DefaultLUTService loads ColorTables from files (hosted locally or externally).
DefaultLUTService() - Constructor for class net.imagej.lut.DefaultLUTService
 
DefaultMagnitudeFeature<T extends RealType<T>,O extends RealType<O>> - Class in net.imagej.ops.features.zernike
Get Magnitude of Zernike moment as feature
DefaultMagnitudeFeature() - Constructor for class net.imagej.ops.features.zernike.DefaultMagnitudeFeature
 
DefaultMainElongation - Class in net.imagej.ops.geom.geom3d
Generic implementation of Ops.Geometric.MainElongation Adapted to 3D from http://www.math.uci.edu/icamp/summer/research_11/park/ shape_descriptors_survey.pdf
DefaultMainElongation() - Constructor for class net.imagej.ops.geom.geom3d.DefaultMainElongation
 
DefaultMajorAxis - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.majorAxis.
DefaultMajorAxis() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMajorAxis
 
DefaultMapNeighborhood<I,O> - Class in net.imagej.ops.map.neighborhood
Evaluates a UnaryComputerOp for each Neighborhood on the input RandomAccessibleInterval.
DefaultMapNeighborhood() - Constructor for class net.imagej.ops.map.neighborhood.DefaultMapNeighborhood
 
DefaultMarchingCubes<T extends BooleanType<T>> - Class in net.imagej.ops.geom.geom3d
This is a marching cubes implementation.
DefaultMarchingCubes() - Constructor for class net.imagej.ops.geom.geom3d.DefaultMarchingCubes
 
DefaultMaxFilter<T,V> - Class in net.imagej.ops.filter.max
Default implementation of MaxFilterOp.
DefaultMaxFilter() - Constructor for class net.imagej.ops.filter.max.DefaultMaxFilter
 
DefaultMaximumFeret - Class in net.imagej.ops.geom.geom2d
Maximum Feret of a polygon.
DefaultMaximumFeret() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMaximumFeret
 
DefaultMaximumFeretAngle - Class in net.imagej.ops.geom.geom2d
 
DefaultMaximumFeretAngle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle
 
DefaultMaximumFeretDiameter - Class in net.imagej.ops.geom.geom2d
 
DefaultMaximumFeretDiameter() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter
 
DefaultMaxProbability<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Maximum Probability Haralick Feature
DefaultMaxProbability() - Constructor for class net.imagej.ops.features.haralick.DefaultMaxProbability
 
DefaultMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.max using stats.sum and stats.size.
DefaultMean() - Constructor for class net.imagej.ops.stats.DefaultMean
 
DefaultMeanFilter<T,V> - Class in net.imagej.ops.filter.mean
Default implementation of MeanFilterOp.
DefaultMeanFilter() - Constructor for class net.imagej.ops.filter.mean.DefaultMeanFilter
 
DefaultMedian<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.median.
DefaultMedian() - Constructor for class net.imagej.ops.stats.DefaultMedian
 
DefaultMedianElongation - Class in net.imagej.ops.geom.geom3d
Generic implementation of Ops.Geometric.MedianElongation.
DefaultMedianElongation() - Constructor for class net.imagej.ops.geom.geom3d.DefaultMedianElongation
 
DefaultMedianFilter<T,V> - Class in net.imagej.ops.filter.median
Default implementation of MedianFilterOp.
DefaultMedianFilter() - Constructor for class net.imagej.ops.filter.median.DefaultMedianFilter
 
DefaultMinFilter<T,V> - Class in net.imagej.ops.filter.min
Default implementation of MinFilterOp.
DefaultMinFilter() - Constructor for class net.imagej.ops.filter.min.DefaultMinFilter
 
DefaultMinimumFeret - Class in net.imagej.ops.geom.geom2d
Minimum Feret of a polygon.
DefaultMinimumFeret() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinimumFeret
 
DefaultMinimumFeretAngle - Class in net.imagej.ops.geom.geom2d
 
DefaultMinimumFeretAngle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle
 
DefaultMinimumFeretDiameter - Class in net.imagej.ops.geom.geom2d
 
DefaultMinimumFeretDiameter() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter
 
DefaultMinMax<I extends RealType<I>> - Class in net.imagej.ops.stats
Op to calculate the stats.minMax.
DefaultMinMax() - Constructor for class net.imagej.ops.stats.DefaultMinMax
 
DefaultMinMaxMethod<T extends Type<T> & Comparable<T>> - Class in net.imagej.minmax
A MinMaxMethod implementation that forks net.imglib2.algorithm.stats.ComputeMinMax.
DefaultMinMaxMethod() - Constructor for class net.imagej.minmax.DefaultMinMaxMethod
 
DefaultMinorAxis - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.minorAxis.
DefaultMinorAxis() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinorAxis
 
DefaultMinorMajorAxis - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.secondMultiVariate.
DefaultMinorMajorAxis() - Constructor for class net.imagej.ops.geom.geom2d.DefaultMinorMajorAxis
 
DefaultMoment00<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.moments
Op to calculate the imageMoments.moment00.
DefaultMoment00() - Constructor for class net.imagej.ops.imagemoments.moments.DefaultMoment00
 
DefaultMoment01<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.moments
Op to calculate the imageMoments.moment01.
DefaultMoment01() - Constructor for class net.imagej.ops.imagemoments.moments.DefaultMoment01
 
DefaultMoment10<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.moments
Op to calculate the imageMoments.moment10.
DefaultMoment10() - Constructor for class net.imagej.ops.imagemoments.moments.DefaultMoment10
 
DefaultMoment11<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.moments
Op to calculate the imageMoments.moment11.
DefaultMoment11() - Constructor for class net.imagej.ops.imagemoments.moments.DefaultMoment11
 
DefaultMoment1AboutMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.moment1AboutMean using stats.mean and stats.size.
DefaultMoment1AboutMean() - Constructor for class net.imagej.ops.stats.DefaultMoment1AboutMean
 
DefaultMoment2AboutMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.moment2AboutMean using stats.mean and stats.size.
DefaultMoment2AboutMean() - Constructor for class net.imagej.ops.stats.DefaultMoment2AboutMean
 
DefaultMoment3AboutMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.moment3AboutMean using stats.mean and stats.size.
DefaultMoment3AboutMean() - Constructor for class net.imagej.ops.stats.DefaultMoment3AboutMean
 
DefaultMoment4AboutMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.moment4AboutMean using stats.mean and stats.size.
DefaultMoment4AboutMean() - Constructor for class net.imagej.ops.stats.DefaultMoment4AboutMean
 
DefaultNamespaceService - Class in net.imagej.ops
Interface for services that manage Ops Namespaces.
DefaultNamespaceService() - Constructor for class net.imagej.ops.DefaultNamespaceService
 
DefaultNormalizedCentralMoment02<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments
Op to calculate the imageMoments.normalizedCentralMoment02.
DefaultNormalizedCentralMoment02() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment02
 
DefaultNormalizedCentralMoment03<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments
Op to calculate the imageMoments.normalizedCentralMoment03.
DefaultNormalizedCentralMoment03() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment03
 
DefaultNormalizedCentralMoment11<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments
Op to calculate the imageMoments.normalizedCentralMoment11.
DefaultNormalizedCentralMoment11() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment11
 
DefaultNormalizedCentralMoment12<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments
Op to calculate the imageMoments.normalizedCentralMoment12.
DefaultNormalizedCentralMoment12() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment12
 
DefaultNormalizedCentralMoment20<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments
Op to calculate the imageMoments.normalizedCentralMoment20.
DefaultNormalizedCentralMoment20() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment20
 
DefaultNormalizedCentralMoment21<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments
Op to calculate the imageMoments.normalizedCentralMoment21.
DefaultNormalizedCentralMoment21() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment21
 
DefaultNormalizedCentralMoment30<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.normalizedcentralmoments
Op to calculate the imageMoments.normalizedCentralMoment30.
DefaultNormalizedCentralMoment30() - Constructor for class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment30
 
DefaultNotebookService - Class in net.imagej.notebook
AWT-driven implementation of NotebookService.
DefaultNotebookService() - Constructor for class net.imagej.notebook.DefaultNotebookService
 
DefaultObjectInfo - Class in net.imagej.server.services
Default implementation of ObjectInfo.
DefaultObjectInfo(Object, String) - Constructor for class net.imagej.server.services.DefaultObjectInfo
 
DefaultObjectService - Class in net.imagej.server.services
Service that handles concurrent Object registration and retrieval using IDs.
DefaultObjectService() - Constructor for class net.imagej.server.services.DefaultObjectService
 
DefaultOffsetView<T> - Class in net.imagej.ops.transform.offsetView
DefaultOffsetView() - Constructor for class net.imagej.ops.transform.offsetView.DefaultOffsetView
 
DefaultOMEROLine - Class in net.imagej.omero.roi.line
Default implementation of OMEROLine.
DefaultOMEROLine(LineData) - Constructor for class net.imagej.omero.roi.line.DefaultOMEROLine
 
DefaultOMEROMask - Class in net.imagej.omero.roi.mask
Default implementation for OMEROMask.
DefaultOMEROMask(MaskData) - Constructor for class net.imagej.omero.roi.mask.DefaultOMEROMask
 
DefaultOMEROPoint - Class in net.imagej.omero.roi.point
Default implementation of OMEROPoint.
DefaultOMEROPoint(PointData) - Constructor for class net.imagej.omero.roi.point.DefaultOMEROPoint
 
DefaultOMEROPolygon - Class in net.imagej.omero.roi.polyshape
Default implementation of OMEROPolygon.
DefaultOMEROPolygon(PolygonData) - Constructor for class net.imagej.omero.roi.polyshape.DefaultOMEROPolygon
 
DefaultOMEROPolyline - Class in net.imagej.omero.roi.polyshape
Default implementation of OMEROPolyline.
DefaultOMEROPolyline(PolylineData) - Constructor for class net.imagej.omero.roi.polyshape.DefaultOMEROPolyline
 
DefaultOMEROROICollection - Class in net.imagej.omero.roi
Default implementation of OMEROROICollection.
DefaultOMEROROICollection(TreeNode<?>, ROIData, ConvertService) - Constructor for class net.imagej.omero.roi.DefaultOMEROROICollection
 
DefaultOMEROROICollection(ROIData, ConvertService) - Constructor for class net.imagej.omero.roi.DefaultOMEROROICollection
 
DefaultOMEROROIElement - Class in net.imagej.omero.roi
Default implementation of OMEROROIElement.
DefaultOMEROROIElement(OMERORealMask<?>, TreeNode<?>, List<TreeNode<?>>) - Constructor for class net.imagej.omero.roi.DefaultOMEROROIElement
 
DefaultOMEROROIProjector - Class in net.imagej.omero.roi.project
Default implementation of OMEROROIProjector.
DefaultOMEROROIProjector() - Constructor for class net.imagej.omero.roi.project.DefaultOMEROROIProjector
 
DefaultOMEROService - Class in net.imagej.omero
Default ImageJ service for managing OMERO data conversion.
DefaultOMEROService() - Constructor for class net.imagej.omero.DefaultOMEROService
 
DefaultOMEROSession - Class in net.imagej.omero
Helper class for managing OMERO client sessions.
DefaultOMEROSession(OMEROLocation, OMEROService) - Constructor for class net.imagej.omero.DefaultOMEROSession
 
DefaultOMEROSession(OMEROLocation, client, OMEROService) - Constructor for class net.imagej.omero.DefaultOMEROSession
 
DefaultOpMatchingService - Class in net.imagej.ops
Default service for finding Ops which match a request.
DefaultOpMatchingService() - Constructor for class net.imagej.ops.DefaultOpMatchingService
 
DefaultOpService - Class in net.imagej.ops
Default service for managing and executing Ops.
DefaultOpService() - Constructor for class net.imagej.ops.DefaultOpService
 
DefaultOverlayService - Class in net.imagej.display
Default service for working with Overlays.
DefaultOverlayService() - Constructor for class net.imagej.display.DefaultOverlayService
 
DefaultOverlayView - Class in net.imagej.display
A view into an Overlay, for use with a ImageDisplay.
DefaultOverlayView() - Constructor for class net.imagej.display.DefaultOverlayView
 
DefaultPadInputFFT<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad
Op used to pad the image using the default FFT padding scheme.
DefaultPadInputFFT() - Constructor for class net.imagej.ops.filter.pad.DefaultPadInputFFT
 
DefaultPadShiftKernelFFT<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad
Op used to pad the kernel using the default FFT padding scheme and shift the center of the kernel to the origin
DefaultPadShiftKernelFFT() - Constructor for class net.imagej.ops.filter.pad.DefaultPadShiftKernelFFT
 
DefaultPearsons<T extends RealType<T>,U extends RealType<U>> - Class in net.imagej.ops.coloc.pearsons
A class that represents the mean calculation of the two source images in the data container.
DefaultPearsons() - Constructor for class net.imagej.ops.coloc.pearsons.DefaultPearsons
 
DefaultPercentile<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the n-th stats.percentile.
DefaultPercentile() - Constructor for class net.imagej.ops.stats.DefaultPercentile
 
DefaultPerimeterLength - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.boundarySize.
DefaultPerimeterLength() - Constructor for class net.imagej.ops.geom.geom2d.DefaultPerimeterLength
 
DefaultPermuteCoordinatesInverseView<T> - Class in net.imagej.ops.transform.permuteCoordinatesInverseView
DefaultPermuteCoordinatesInverseView() - Constructor for class net.imagej.ops.transform.permuteCoordinatesInverseView.DefaultPermuteCoordinatesInverseView
 
DefaultPermuteCoordinatesView<T> - Class in net.imagej.ops.transform.permuteCoordinatesView
DefaultPermuteCoordinatesView() - Constructor for class net.imagej.ops.transform.permuteCoordinatesView.DefaultPermuteCoordinatesView
 
DefaultPermuteView<T> - Class in net.imagej.ops.transform.permuteView
DefaultPermuteView() - Constructor for class net.imagej.ops.transform.permuteView.DefaultPermuteView
 
DefaultPhaseFeature<T extends RealType<T>,O extends RealType<O>> - Class in net.imagej.ops.features.zernike
Get Phase of Zernike moment as feature
DefaultPhaseFeature() - Constructor for class net.imagej.ops.features.zernike.DefaultPhaseFeature
 
DefaultProjectParallel<T,V> - Class in net.imagej.ops.transform.project
 
DefaultProjectParallel() - Constructor for class net.imagej.ops.transform.project.DefaultProjectParallel
 
DefaultPValue<T extends RealType<T>,U extends RealType<U>> - Class in net.imagej.ops.coloc.pValue
This algorithm repeatedly executes a colocalization algorithm, computing a p-value.
DefaultPValue() - Constructor for class net.imagej.ops.coloc.pValue.DefaultPValue
 
DefaultQuantile<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the n-th stats.percentile.
DefaultQuantile() - Constructor for class net.imagej.ops.stats.DefaultQuantile
 
DefaultRasterView<T> - Class in net.imagej.ops.transform.rasterView
DefaultRasterView() - Constructor for class net.imagej.ops.transform.rasterView.DefaultRasterView
 
DefaultResultsTable - Class in net.imagej.table
Default implementation of ResultsTable.
DefaultResultsTable() - Constructor for class net.imagej.table.DefaultResultsTable
Creates an empty results table.
DefaultResultsTable(int, int) - Constructor for class net.imagej.table.DefaultResultsTable
Creates a results table with the given row and column dimensions.
DefaultROIService - Class in net.imagej.roi
Default implementation of ROIService.
DefaultROIService() - Constructor for class net.imagej.roi.DefaultROIService
 
DefaultROITree - Class in net.imagej.roi
Default implementation of ROITree.
DefaultROITree() - Constructor for class net.imagej.roi.DefaultROITree
Creates an empty tree of ROIs.
DefaultRoiWrapper<R extends Roi> - Class in net.imagej.legacy.convert.roi
Wraps any Roi as a MaskInterval.
DefaultRoiWrapper(R) - Constructor for class net.imagej.legacy.convert.roi.DefaultRoiWrapper
Creates a MaskInterval which wraps the given Roi.
DefaultRoiWrapperToMaskData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData
 
DefaultRotateView<T> - Class in net.imagej.ops.transform.rotateView
DefaultRotateView() - Constructor for class net.imagej.ops.transform.rotateView.DefaultRotateView
 
DefaultRoundness - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.roundness.
DefaultRoundness() - Constructor for class net.imagej.ops.geom.geom2d.DefaultRoundness
 
DefaultSamplerService - Class in net.imagej.sampler
Default implementation of SamplerService.
DefaultSamplerService() - Constructor for class net.imagej.sampler.DefaultSamplerService
 
DefaultScaleView<T> - Class in net.imagej.ops.transform.scaleView
Scales a RandomAccessibleInterval in each dimension with the provided scale factors.
DefaultScaleView() - Constructor for class net.imagej.ops.transform.scaleView.DefaultScaleView
 
DefaultShearView<T> - Class in net.imagej.ops.transform.shearView
DefaultShearView() - Constructor for class net.imagej.ops.transform.shearView.DefaultShearView
 
DefaultSigmaFilter<T extends RealType<T>,V extends RealType<V>> - Class in net.imagej.ops.filter.sigma
Default implementation of SigmaFilterOp.
DefaultSigmaFilter() - Constructor for class net.imagej.ops.filter.sigma.DefaultSigmaFilter
 
DefaultSize<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.size.
DefaultSize() - Constructor for class net.imagej.ops.stats.DefaultSize
 
DefaultSizeConvexHullPolygon - Class in net.imagej.ops.geom.geom2d
 
DefaultSizeConvexHullPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultSizeConvexHullPolygon
 
DefaultSizePolygon - Class in net.imagej.ops.geom.geom2d
Specific implementation of Area for a Polygon2D.
DefaultSizePolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultSizePolygon
 
DefaultSkewness<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.skewness using stats.moment3AboutMean and stats.stdDev.
DefaultSkewness() - Constructor for class net.imagej.ops.stats.DefaultSkewness
 
DefaultSmallestEnclosingRectangle - Class in net.imagej.ops.geom.geom2d
Generic implementation of geom.smallestBoundingBox.
DefaultSmallestEnclosingRectangle() - Constructor for class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
 
DefaultSmallestOrientedBoundingBox - Class in net.imagej.ops.geom.geom3d.mesh
Generic implementation of geom.smallestBoundingBox.
DefaultSmallestOrientedBoundingBox() - Constructor for class net.imagej.ops.geom.geom3d.mesh.DefaultSmallestOrientedBoundingBox
 
DefaultSolidityMesh - Class in net.imagej.ops.geom.geom3d
 
DefaultSolidityMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSolidityMesh
 
DefaultSolidityPolygon - Class in net.imagej.ops.geom.geom2d
 
DefaultSolidityPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultSolidityPolygon
 
DefaultSparenessMesh - Class in net.imagej.ops.geom.geom3d
Generic implementation of Ops.Geometric.Spareness.
DefaultSparenessMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
 
DefaultSphericity - Class in net.imagej.ops.geom.geom3d
Generic implementation of Ops.Geometric.Sphericity.
DefaultSphericity() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSphericity
 
DefaultStackView<T> - Class in net.imagej.ops.transform.stackView
Wraps the Views.stack(List) method.
DefaultStackView() - Constructor for class net.imagej.ops.transform.stackView.DefaultStackView
 
DefaultStandardDeviation<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.stdDev using stats.variance.
DefaultStandardDeviation() - Constructor for class net.imagej.ops.stats.DefaultStandardDeviation
 
DefaultSubsampleView<T> - Class in net.imagej.ops.transform.subsampleView
DefaultSubsampleView() - Constructor for class net.imagej.ops.transform.subsampleView.DefaultSubsampleView
 
DefaultSum<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.sum.
DefaultSum() - Constructor for class net.imagej.ops.stats.DefaultSum
 
DefaultSumAverage<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Sum Average Haralick Feature
DefaultSumAverage() - Constructor for class net.imagej.ops.features.haralick.DefaultSumAverage
 
DefaultSumEntropy<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Sum Entropy Haralick Feature
DefaultSumEntropy() - Constructor for class net.imagej.ops.features.haralick.DefaultSumEntropy
 
DefaultSumOfInverses<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.sumOfInverses.
DefaultSumOfInverses() - Constructor for class net.imagej.ops.stats.DefaultSumOfInverses
 
DefaultSumOfLogs<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.sumOfLogs.
DefaultSumOfLogs() - Constructor for class net.imagej.ops.stats.DefaultSumOfLogs
 
DefaultSumOfSquares<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.sumOfSquares.
DefaultSumOfSquares() - Constructor for class net.imagej.ops.stats.DefaultSumOfSquares
 
DefaultSumVariance<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Sum Variance Haralick Feature according to http://murphylab.web.cmu.edu/publications/boland/boland_node26.html .
DefaultSumVariance() - Constructor for class net.imagej.ops.features.haralick.DefaultSumVariance
 
DefaultSurfaceArea - Class in net.imagej.ops.geom.geom3d
Generic implementation of Ops.Geometric.BoundarySize.
DefaultSurfaceArea() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSurfaceArea
 
DefaultSurfaceAreaConvexHullMesh - Class in net.imagej.ops.geom.geom3d
 
DefaultSurfaceAreaConvexHullMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultSurfaceAreaConvexHullMesh
 
DefaultTableIOPlugin - Class in net.imagej.server.external
Plugin for reading/writing GenericTables.
DefaultTableIOPlugin() - Constructor for class net.imagej.server.external.DefaultTableIOPlugin
 
DefaultTableService - Class in net.imagej.table
 
DefaultTableService() - Constructor for class net.imagej.table.DefaultTableService
 
DefaultTensorFlowService - Class in net.imagej.tensorflow
Default implementation of TensorFlowService.
DefaultTensorFlowService() - Constructor for class net.imagej.tensorflow.DefaultTensorFlowService
 
DefaultTextureHomogeneity<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Texture Homogeneity Haralick Feature
DefaultTextureHomogeneity() - Constructor for class net.imagej.ops.features.haralick.DefaultTextureHomogeneity
 
DefaultTranslateView<T> - Class in net.imagej.ops.transform.translateView
DefaultTranslateView() - Constructor for class net.imagej.ops.transform.translateView.DefaultTranslateView
 
DefaultTubeness<T extends RealType<T>> - Class in net.imagej.ops.filter.tubeness
The Tubeness filter: enhance filamentous structures of a specified thickness.
DefaultTubeness() - Constructor for class net.imagej.ops.filter.tubeness.DefaultTubeness
 
DefaultTypedAxis - Class in net.imagej.axis
Default implementation of TypedAxis.
DefaultTypedAxis() - Constructor for class net.imagej.axis.DefaultTypedAxis
 
DefaultTypedAxis(AxisType) - Constructor for class net.imagej.axis.DefaultTypedAxis
 
DefaultTypedSpace - Class in net.imagej.space
Default implementation of TypedSpace.
DefaultTypedSpace(int) - Constructor for class net.imagej.space.DefaultTypedSpace
 
DefaultTypedSpace(TypedAxis...) - Constructor for class net.imagej.space.DefaultTypedSpace
 
DefaultTypedSpace(List<TypedAxis>) - Constructor for class net.imagej.space.DefaultTypedSpace
 
DefaultUnitService - Class in net.imagej.units
Service for defining units and making unit conversions.
DefaultUnitService() - Constructor for class net.imagej.units.DefaultUnitService
 
DefaultUnshearView<T> - Class in net.imagej.ops.transform.unshearView
DefaultUnshearView() - Constructor for class net.imagej.ops.transform.unshearView.DefaultUnshearView
 
DefaultUpdateService - Class in net.imagej.updater
Default service for managing ImageJ updates.
DefaultUpdateService() - Constructor for class net.imagej.updater.DefaultUpdateService
 
DefaultUploaderService - Class in net.imagej.updater
Default service for managing available ImageJ upload mechanisms.
DefaultUploaderService() - Constructor for class net.imagej.updater.DefaultUploaderService
 
DefaultVariance<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Implementation of Variance Haralick Feature based on http://murphylab.web.cmu.edu/publications/boland/boland_node26.html
DefaultVariance() - Constructor for class net.imagej.ops.features.haralick.DefaultVariance
 
DefaultVariance<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.variance using the stats.stdDev using the two-pass algorithm.
DefaultVariance() - Constructor for class net.imagej.ops.stats.DefaultVariance
 
DefaultVarianceFilter<T,V> - Class in net.imagej.ops.filter.variance
Default implementation of VarianceFilterOp.
DefaultVarianceFilter() - Constructor for class net.imagej.ops.filter.variance.DefaultVarianceFilter
 
DefaultVertexInterpolator - Class in net.imagej.ops.geom.geom3d.mesh
Linearly interpolate the position where an isosurface cuts an edge between two vertices, each with their own scalar value
DefaultVertexInterpolator() - Constructor for class net.imagej.ops.geom.geom3d.mesh.DefaultVertexInterpolator
 
DefaultVerticesCountConvexHullMesh - Class in net.imagej.ops.geom.geom3d
 
DefaultVerticesCountConvexHullMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh
 
DefaultVerticesCountConvexHullPolygon - Class in net.imagej.ops.geom.geom2d
 
DefaultVerticesCountConvexHullPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon
 
DefaultVerticesCountMesh - Class in net.imagej.ops.geom.geom3d
Generic implementation of geom.boundaryPixelCount.
DefaultVerticesCountMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVerticesCountMesh
 
DefaultVerticesCountPolygon - Class in net.imagej.ops.geom.geom2d
 
DefaultVerticesCountPolygon() - Constructor for class net.imagej.ops.geom.geom2d.DefaultVerticesCountPolygon
 
DefaultVolumeConvexHullMesh - Class in net.imagej.ops.geom.geom3d
 
DefaultVolumeConvexHullMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVolumeConvexHullMesh
 
DefaultVolumeMesh - Class in net.imagej.ops.geom.geom3d
Generic implementation of Ops.Geometric.Size.
DefaultVolumeMesh() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVolumeMesh
 
DefaultVoxelization3D - Class in net.imagej.ops.geom.geom3d
This is a voxelizer that produces a binary image with values filled in along the surface of the mesh.
DefaultVoxelization3D() - Constructor for class net.imagej.ops.geom.geom3d.DefaultVoxelization3D
 
DefaultWindowService - Class in net.imagej.display
Default service for keeping track of open windows, including management of the Windows menu.
DefaultWindowService() - Constructor for class net.imagej.display.DefaultWindowService
 
DefaultXYEquation<T extends RealType<T>> - Class in net.imagej.ops.image.equation
An equation operation which computes image values from x and y coordinates using a binary lambda.
DefaultXYEquation() - Constructor for class net.imagej.ops.image.equation.DefaultXYEquation
 
DefaultZeroMinView<T> - Class in net.imagej.ops.transform.zeroMinView
DefaultZeroMinView() - Constructor for class net.imagej.ops.transform.zeroMinView.DefaultZeroMinView
 
DefaultZoomService - Class in net.imagej.display
Default service for performing zoom operations on ImageDisplays.
DefaultZoomService() - Constructor for class net.imagej.display.DefaultZoomService
 
defineUnit(String, String, double) - Method in class net.imagej.units.DefaultUnitService
 
defineUnit(String, String, double, double) - Method in class net.imagej.units.DefaultUnitService
 
defineUnit(String, String, Calibrator) - Method in class net.imagej.units.DefaultUnitService
 
defineUnit(String, String, double) - Method in interface net.imagej.units.UnitService
Defines a unit conversion that can be referred to via the value() method.
defineUnit(String, String, double, double) - Method in interface net.imagej.units.UnitService
Defines a unit conversion that can be referred to via the value() method.
defineUnit(String, String, Calibrator) - Method in interface net.imagej.units.UnitService
Defines a unit conversion that can be referred to via the value() method.
degree() - Method in class net.imagej.axis.PolynomialAxis
Gets the degree of the polynomial (i.e., the largest exponent with a non-zero coefficient).
DELAY_IN_MICROSECONDS - Static variable in class net.imagej.util.MirrorWebsite
 
DelayedPositionEvent - Class in net.imagej.display.event
An event indicating that a display's dimensional position has changed.
DelayedPositionEvent(ImageDisplay) - Constructor for class net.imagej.display.event.DelayedPositionEvent
 
DelayedPositionEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.DelayedPositionEvent
 
DelegatingBinaryOp<I1,I2,O,DI1,DI2,DO,OP extends BinaryOp<DI1,DI2,DO>> - Interface in net.imagej.ops.special.chain
Base interface for BinaryOps that delegate to other BinaryOps.
DelegatingUnaryOp<I,O,DI,DO,OP extends UnaryOp<DI,DO>> - Interface in net.imagej.ops.special.chain
Base interface for UnaryOps that delegate to other UnaryOps.
delete() - Method in class net.imagej.AbstractData
Informs interested parties that the data object is no longer relevant and should be deleted.
delete() - Method in class net.imagej.DefaultDataset
 
delete() - Method in class net.imagej.overlay.AbstractOverlay
 
delete(int) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
delete(FileObject) - Method in class net.imagej.updater.CommandLine
 
deleteAll() - Method in class net.imagej.display.OverlayInfoList
 
DeleteAxis - Class in net.imagej.plugins.commands.restructure
Deletes an axis from an input Dataset.
DeleteAxis() - Constructor for class net.imagej.plugins.commands.restructure.DeleteAxis
 
deleteColumn(String) - Method in class net.imagej.legacy.convert.TableWrapper
 
DeleteData - Class in net.imagej.plugins.commands.restructure
Deletes hyperplanes of data from an input Dataset along a user specified axis.
DeleteData() - Constructor for class net.imagej.plugins.commands.restructure.DeleteData
 
deleteFile(String, File) - Method in class net.imagej.updater.Conflicts
 
deleteImagePlus(ImagePlus) - Static method in class net.imagej.legacy.translate.LegacyUtils
Modifies legacy ImageJ data structures so that there are no dangling references to an obsolete ImagePlus.
deleteOrThrowException(File) - Static method in class net.imagej.updater.Installer
 
deleteOverlay(Overlay) - Method in class net.imagej.display.OverlayInfoList
 
deleteOverlayInfo(int) - Method in class net.imagej.display.OverlayInfoList
 
deleteOverlayInfo(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
 
deleteRow(int) - Method in class net.imagej.legacy.convert.TableWrapper
 
DeleteThreshold - Class in net.imagej.plugins.commands.display.interactive
DeleteThreshold is a Command that allows one to remove an existing threshold overlay from an ImageDisplay.
DeleteThreshold() - Constructor for class net.imagej.plugins.commands.display.interactive.DeleteThreshold
 
deleteThreshold() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
dependencies - Variable in class net.imagej.updater.FileObject
 
Dependency - Class in net.imagej.updater
A simple data structure for storing information about a dependency.
Dependency(String, long, boolean) - Constructor for class net.imagej.updater.Dependency
 
DependencyAnalyzer - Class in net.imagej.updater.util
This class generates a list of dependencies for a given file.
DependencyAnalyzer(File) - Constructor for class net.imagej.updater.util.DependencyAnalyzer
 
DependencyMap() - Constructor for class net.imagej.updater.FilesCollection.DependencyMap
 
dependencyNotUploaded(FileObject, String) - Method in class net.imagej.updater.Conflicts
 
dependencyRemoved(FileObject, String) - Method in class net.imagej.updater.Conflicts
 
dependencyResolution(String, FileObject, String, String) - Method in class net.imagej.updater.Conflicts
 
derivativeGauss(RandomAccessibleInterval<T>, RandomAccessibleInterval<DoubleType>, int[], double...) - Method in class net.imagej.ops.filter.FilterNamespace
 
description() - Method in interface net.imagej.types.DataType
A fuller description that elaborates on the capabilities of the type.
description() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
description() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
description() - Method in class net.imagej.types.DataType16BitSignedInteger
 
description() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
description() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
description() - Method in class net.imagej.types.DataType32BitSignedFloat
 
description() - Method in class net.imagej.types.DataType32BitSignedInteger
 
description() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
description() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
description() - Method in class net.imagej.types.DataType64BitSignedFloat
 
description() - Method in class net.imagej.types.DataType64BitSignedInteger
 
description() - Method in class net.imagej.types.DataType8BitSignedInteger
 
description() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
description() - Method in class net.imagej.types.DataTypeBoolean
 
description() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
description() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
description() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
description(String, FileObject) - Method in class net.imagej.ui.swing.updater.FileDetails
 
description - Variable in class net.imagej.updater.FileObject
 
descriptionFromPOM - Variable in class net.imagej.updater.FileObject
 
deselectAll() - Method in class net.imagej.display.OverlayInfoList
 
DeselectOverlays - Class in net.imagej.plugins.commands.display
Deselects all the overlays linked to the given display.
DeselectOverlays() - Constructor for class net.imagej.plugins.commands.display.DeselectOverlays
 
detectJunctions(List<? extends WritablePolyline>) - Method in class net.imagej.ops.segment.SegmentNamespace
 
detectJunctions(List<? extends WritablePolyline>, double) - Method in class net.imagej.ops.segment.SegmentNamespace
 
detectRidges(RandomAccessibleInterval<T>, double, double, double, int) - Method in class net.imagej.ops.segment.SegmentNamespace
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class net.imagej.legacy.ui.LegacyUI
 
diff - Variable in class net.imagej.ui.swing.updater.DiffFile
 
diff(List<String>) - Method in class net.imagej.updater.CommandLine
 
Diff - Class in net.imagej.updater
Show differences between remote and local versions of files.
Diff(PrintStream) - Constructor for class net.imagej.updater.Diff
Deprecated.
Diff(PrintStream, UpdaterUtil) - Constructor for class net.imagej.updater.Diff
Construct a Diff object.
Diff.Mode - Enum in net.imagej.updater
 
differenceEntropy(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
differenceEntropy(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
differenceVariance(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
differenceVariance(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
DiffFile - Class in net.imagej.ui.swing.updater
A JFrame to show the differences between the remote and local versions of a file known to the ImageJ Updater.
DiffFile(FilesCollection, FileObject, Diff.Mode) - Constructor for class net.imagej.ui.swing.updater.DiffFile
Initialize the frame.
diffOffset - Variable in class net.imagej.ui.swing.updater.DiffFile
 
diffView - Variable in class net.imagej.ui.swing.updater.DiffFile
 
DiffView - Class in net.imagej.ui.swing.updater
A scroll pane that colorizes diff output.
DiffView() - Constructor for class net.imagej.ui.swing.updater.DiffView
Create a colorized diff view.
dilate(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
dilate(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
dilate(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>, boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
DilateBinaryImage - Class in net.imagej.plugins.commands.binary
Does a morphological dilate operation on a binary image.
DilateBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.DilateBinaryImage
 
dimension(AxisType) - Method in interface net.imagej.Dataset
Gets the length of the axis with the given AxisType.
dimension(int) - Method in class net.imagej.DefaultDataset
 
dimension(int) - Method in class net.imagej.display.DefaultImageDisplay
 
dimension(int) - Method in class net.imagej.ImgPlus
 
dimension(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
dimension(int) - Method in class net.imagej.Position
Returns the dimension of the Position's parent Extents at a given i.
dimension(int) - Method in class net.imagej.table.ResultsImg
 
dimensionIndex(AxisType) - Method in class net.imagej.DefaultDataset
 
dimensionIndex(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
 
dimensionIndex(AxisType) - Method in class net.imagej.space.CombinedSpace
 
dimensionIndex(AxisType) - Method in interface net.imagej.space.TypedSpace
Gets the dimensional index of the axis with the given type.
dimensions(long[]) - Method in class net.imagej.DefaultDataset
 
dimensions(long[]) - Method in class net.imagej.display.DefaultImageDisplay
 
dimensions(long[]) - Method in class net.imagej.ImgPlus
 
dimensions(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
dimensions(long[]) - Method in class net.imagej.table.ResultsImg
 
dimensionsIJ1Compatible(Dataset) - Static method in class net.imagej.legacy.translate.LegacyUtils
Determines if a Dataset's dimensions cannot be represented within a legacy ImageJ ImageStack.
dimensionsRealToComplex(boolean, Dimensions, long[], long[]) - Static method in class net.imagej.ops.filter.fft.FFTMethodsUtility
Calculates padding size and complex FFT size for real to complex FFT
DimSelectionWidget<U> - Interface in net.imagej.ui.swing.widget
Widget interface for dimension selectors.
DimSelectionWidget<U> - Interface in net.imagej.widget
Widget interface for dimension selectors.
directionality(RandomAccessibleInterval<I>, int) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
directionality(O, RandomAccessibleInterval<I>, int) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
directories - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
directories - Static variable in class net.imagej.updater.Checksummer
 
disableIJ1PluginDirs() - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
 
disableIJ1PluginDirs() - Method in class net.imagej.patcher.LegacyEnvironment
Disallows the encapsulated ImageJ 1.x from parsing the directories listed in ij1.plugin.dirs.
disableInitializer() - Method in class net.imagej.patcher.LegacyEnvironment
Disables the execution of the ij1.patcher.initializer.
disableRowLabels() - Method in class net.imagej.legacy.convert.TableWrapper
 
disconnectSession() - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
dispatcher - Variable in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
display(Object) - Method in class net.imagej.display.DefaultImageDisplay
 
display(Object) - Method in class net.imagej.notebook.DefaultNotebookService
 
display(Object) - Method in interface net.imagej.notebook.NotebookService
Converts the given object to a form renderable by scientific notebooks.
display(Map<?, ?>) - Method in interface net.imagej.notebook.NotebookService
Converts the given map data to a form renderable by scientific notebooks.
display(Map<?, T>, String) - Method in interface net.imagej.notebook.NotebookService
Converts the given map data to a form renderable by scientific notebooks.
display(List<?>) - Method in interface net.imagej.notebook.NotebookService
Converts the given list data to a form renderable by scientific notebooks.
display(List<?>, String) - Method in interface net.imagej.notebook.NotebookService
Converts the given list data to a form renderable by scientific notebooks.
display(List<?>, List<String>) - Method in interface net.imagej.notebook.NotebookService
Converts the given list data to a form renderable by scientific notebooks.
display(List<T>, String, List<String>) - Method in interface net.imagej.notebook.NotebookService
Converts the given list data to a form renderable by scientific notebooks.
display(Dataset) - Method in interface net.imagej.notebook.NotebookService
Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>) - Method in interface net.imagej.notebook.NotebookService
Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>, double, double) - Method in interface net.imagej.notebook.NotebookService
Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>, double[], double[]) - Method in interface net.imagej.notebook.NotebookService
Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>, int, int, int, NotebookService.ValueScaling, long...) - Method in interface net.imagej.notebook.NotebookService
Converts the given image to a form renderable by scientific notebooks.
display(RandomAccessibleInterval<T>, int, int, int, double[], double[], long...) - Method in interface net.imagej.notebook.NotebookService
Converts the given image to a form renderable by scientific notebooks.
display - Variable in class net.imagej.plugins.commands.assign.MathCommand
 
DisplayCreator - Class in net.imagej.legacy.translate
Class to create a Dataset which is linked to an ImagePlus.
DisplayCreator(Context) - Constructor for class net.imagej.legacy.translate.DisplayCreator
 
DisplayHarmonizer - Interface in net.imagej.legacy.translate
General interface for all DisplayHarmonizers.
displayService - Variable in class net.imagej.plugins.commands.assign.MathCommand
 
displayTypeChanged() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
dispose() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
dispose() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Disposes of the hooks.
dispose() - Method in class net.imagej.animation.DefaultAnimationService
 
dispose() - Method in class net.imagej.display.AbstractDataView
 
dispose() - Method in interface net.imagej.display.DataView
Discards the view, performing any needed cleanup.
dispose() - Method in class net.imagej.legacy.DefaultLegacyHooks
 
dispose() - Method in class net.imagej.legacy.IJ1Helper
Forcibly shuts down ImageJ1, with no user interaction or opportunity to cancel.
dispose() - Method in class net.imagej.legacy.LegacyService
 
dispose() - Method in class net.imagej.legacy.ui.LegacyUI
 
dispose() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
dispose() - Method in class net.imagej.patcher.LegacyHooks
Disposes of the hooks.
dispose() - Method in class net.imagej.server.DefaultImageJServerService
 
dispose() - Method in class net.imagej.tensorflow.DefaultTensorFlowService
 
dispose() - Method in class net.imagej.ui.swing.updater.ReviewSiteURLsDialog
 
dispose() - Method in class net.imagej.ui.swing.updater.SitesDialog
 
dispose() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
dispose() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
NB: a reference to the imgCanvas is held, ultimately, by a finalizable parent of a javax.swing.JViewport.
dispose() - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView
 
dispose() - Method in interface net.imagej.ui.swing.viewer.image.FigureView
Removes the figure from the scene.
dispose() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
Clears any resources associated with this canvas.
dispose() - Method in class net.imagej.ui.swing.viewer.image.OverlayFigureView
 
disposing() - Method in class net.imagej.legacy.DefaultLegacyHooks
 
disposing() - Method in class net.imagej.patcher.LegacyHooks
Allows interception of ImageJ 1.x's disposal routine while quitting.
distance - Variable in class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
distanceToPlane(Vector3D) - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
Computes the distance from a point to this facet
distancetransform(RandomAccessibleInterval<T>, RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "distancetransform" operation on the given arguments.
distancetransform(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "distancetransform" operation on the given arguments.
distancetransform(RandomAccessibleInterval<T>, RandomAccessibleInterval<B>, double...) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "distancetransform" operation on the given arguments.
distancetransform(RandomAccessibleInterval<B>, double...) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "distancetransform" operation on the given arguments.
DistanceTransform2D<B extends BooleanType<B>,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform
Computes a distance transform, i.e.
DistanceTransform2D() - Constructor for class net.imagej.ops.image.distancetransform.DistanceTransform2D
 
DistanceTransform2DCalibration<B extends BooleanType<B>,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform
Computes a distance transform, i.e.
DistanceTransform2DCalibration() - Constructor for class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
 
DistanceTransform3D<B extends BooleanType<B>,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform
Computes a distance transform, i.e.
DistanceTransform3D() - Constructor for class net.imagej.ops.image.distancetransform.DistanceTransform3D
 
DistanceTransform3DCalibration<B extends BooleanType<B>,T extends RealType<T>> - Class in net.imagej.ops.image.distancetransform
Computes a distance transform, i.e.
DistanceTransform3DCalibration() - Constructor for class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
 
div(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
div(Output<T>, Output<U>) - Method in class net.imagej.tensorflow.GraphBuilder
 
div(Output<T>, Output<U>, String) - Method in class net.imagej.tensorflow.GraphBuilder
 
div(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex
Set self to the result of division between two BigComplex values.
div(BigComplex) - Method in class net.imagej.types.BigComplex
Divides self by another BigComplex value.
div(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
div(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
div(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
div(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
div(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
Divide() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Divide
 
Divide() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
Divide() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Divide
 
Divide() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Divide
 
Divide() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Divide
 
divide(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
divide(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
divide(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
divide(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
divide(ArrayImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
divide(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
divide(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
divide(float, float) - Method in class net.imagej.ops.math.MathNamespace
 
divide(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
divide(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
divide(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
divide(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
divide(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
divide(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
divide(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
divide(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
divide(O, I1, I2, double) - Method in class net.imagej.ops.math.MathNamespace
 
divide(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
divide(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
divide(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
divide(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
divide(PlanarImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
divide(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
divide(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
divide(T, T) - Method in class net.imagej.ops.math.MathNamespace
 
divide(T, T, T) - Method in class net.imagej.ops.math.MathNamespace
 
Divide() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
DivideByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideByte
 
DivideByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideByte
 
DivideByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideByte
 
divideCompositeOverlay(CompositeOverlay) - Method in class net.imagej.display.DefaultOverlayService
 
divideCompositeOverlay(CompositeOverlay) - Method in interface net.imagej.display.OverlayService
Divides a CompositeOverlay into its constituent parts and registers each part with the appropriate displays.
DivideDataValuesBy<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by dividing an input Dataset by a user defined constant value.
DivideDataValuesBy() - Constructor for class net.imagej.plugins.commands.assign.DivideDataValuesBy
 
DivideDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideDouble
 
DivideDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideDouble
 
DivideDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideDouble
 
DivideFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideFloat
 
DivideFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideFloat
 
DivideFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideFloat
 
DivideInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideInt
 
DivideInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideInt
 
DivideInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideInt
 
DivideLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideLong
 
DivideLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideLong
 
DivideLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideLong
 
DivideShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideShort
 
DivideShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideShort
 
DivideShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideShort
 
DivideUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedByte
 
DivideUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedByte
 
DivideUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedByte
 
DivideUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedInt
 
DivideUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedInt
 
DivideUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedInt
 
DivideUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedLong
 
DivideUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedLong
 
DivideUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedLong
 
DivideUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedShort
 
DivideUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedShort
 
DivideUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedShort
 
DllFile - Class in net.imagej.updater
Analyses .dll files whether they are really different.
DllFile(File) - Constructor for class net.imagej.updater.DllFile
Constructs a .dll file parser.
document - Variable in class net.imagej.ui.swing.updater.DiffView
 
doesPlatformMatch() - Method in class net.imagej.updater.FilesCollection
 
dog(RandomAccessibleInterval<T>, UnaryComputerOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryComputerOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryFunctionOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryFunctionOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
 
dog(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, UnaryComputerOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryComputerOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryFunctionOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>, UnaryFunctionOp<RandomAccessibleInterval<T>, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
 
dog(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double[], double[], OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
 
dog(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double[], double...) - Method in class net.imagej.ops.filter.FilterNamespace
 
dog(RandomAccessibleInterval<T>, double[], double...) - Method in class net.imagej.ops.filter.FilterNamespace
 
dog(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double, double, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
 
dog(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
 
dog(RandomAccessibleInterval<T>, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
 
DoGSingleSigmas<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.dog
Difference of Gaussians (DoG) implementation where all sigmas are the same in each dimension.
DoGSingleSigmas() - Constructor for class net.imagej.ops.filter.dog.DoGSingleSigmas
 
DoGVaryingSigmas<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.dog
Difference of Gaussians (DoG) implementation where sigmas can vary by dimension.
DoGVaryingSigmas() - Constructor for class net.imagej.ops.filter.dog.DoGVaryingSigmas
 
done() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
done() - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
 
done() - Method in class net.imagej.updater.util.AbstractProgressable
 
done() - Method in interface net.imagej.updater.util.Progress
 
done() - Method in class net.imagej.updater.util.StderrProgress
 
dontCall(int) - Static method in class net.imagej.patcher.JavaAgent
 
doOperation(CompositeOverlay.Operation, Overlay) - Method in class net.imagej.overlay.CompositeOverlay
 
doRefresh() - Method in class net.imagej.ui.swing.widget.SwingColorTableWidget
 
doRefresh() - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget
 
doRefresh() - Method in class net.imagej.ui.swing.widget.SwingHistogramWidget
 
dot(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
DOT_DASH_LINE_STYLE - Static variable in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
DOT_LINE_STYLE - Static variable in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
dotCounter - Variable in class net.imagej.updater.util.StderrProgress
 
dotDashLineStyle - Static variable in class net.imagej.options.OptionsOverlay
 
dotDiv(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
dotLineStyle - Static variable in class net.imagej.options.OptionsOverlay
 
dotMul(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
dotPow(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
DotProduct(Img<T>, Img<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
dotRightDiv(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
dotTranspose(Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
DoubleAbs() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleAbs
 
DoubleAdd() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleAdd
 
DoubleArccos() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleArccos
 
DoubleArcsin() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleArcsin
 
DoubleArctan() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleArctan
 
DoubleBinaryEquationOp<T> - Interface in net.imagej.ops.image.equation
An equation operation which computes image values from real coordinates using a binary lambda.
DoubleCeil() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleCeil
 
DoubleCos() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleCos
 
DoubleCosh() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleCosh
 
DoubleCubeRoot() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleCubeRoot
 
DoubleDivide() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleDivide
 
DoubleEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleEqual
 
DoubleExp() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleExp
 
DoubleFloor() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleFloor
 
DoubleGreaterThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleGreaterThan
 
DoubleGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleGreaterThanOrEqual
 
DoubleLessThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleLessThan
 
DoubleLessThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleLessThanOrEqual
 
DoubleLog() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleLog
 
DoubleLog10() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleLog10
 
DoubleLogOnePlusX() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleLogOnePlusX
 
DoubleMax() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleMax
 
DoubleMin() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleMin
 
DoubleMultiply() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleMultiply
 
DoubleNegate() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleNegate
 
DoubleNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.DoubleNotEqual
 
DoublePower() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoublePower
 
DoubleRemainder() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleRemainder
 
DoubleRound() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleRound
 
DoubleSignum() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSignum
 
DoubleSin() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSin
 
DoubleSinh() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSinh
 
DoubleSqrt() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSqrt
 
DoubleSubtract() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleSubtract
 
DoubleTan() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleTan
 
DoubleTanh() - Constructor for class net.imagej.ops.math.PrimitiveMath.DoubleTanh
 
DoubleToDoubleTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
 
DoubleToImagePlusConverter - Class in net.imagej.legacy.convert
Converts an image ID in double form to its corresponding ImagePlus object.
DoubleToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.DoubleToImagePlusConverter
 
downcastFigure(Figure) - Static method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
downcastOverlay(Overlay) - Static method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
downcastOverlay(Overlay) - Static method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
downgrade(List<String>) - Method in class net.imagej.updater.CommandLine
 
download(FileObject) - Method in class net.imagej.updater.CommandLine
 
download(Downloadable) - Method in class net.imagej.updater.util.Downloader
 
Downloadable - Interface in net.imagej.updater.util
Represents a file to be downloaded from an update site.
Downloader - Class in net.imagej.updater.util
Direct responsibility: Download a list of files given their respective URLs to their respective destinations.
Downloader() - Constructor for class net.imagej.updater.util.Downloader
Deprecated.
Downloader(Progress) - Constructor for class net.imagej.updater.util.Downloader
Deprecated.
Downloader(Progress, UpdaterUtil) - Constructor for class net.imagej.updater.util.Downloader
 
downloadImage(client, long) - Method in class net.imagej.omero.DefaultOMEROService
 
downloadImage(client, long) - Method in interface net.imagej.omero.OMEROService
Downloads the image with the given image ID from OMERO, storing the result into a new ImageJ Dataset.
downloadIndexAndChecksum(Progress) - Method in class net.imagej.updater.FilesCollection
 
downloadROI(OMEROLocation, long) - Method in class net.imagej.omero.DefaultOMEROService
 
downloadROI(OMEROLocation, long) - Method in interface net.imagej.omero.OMEROService
Downloads the ROIData with the given roiID from OMERO, and returns it as a ROITree.
downloadROIs(OMEROLocation, long) - Method in class net.imagej.omero.DefaultOMEROService
 
downloadROIs(OMEROLocation, long) - Method in interface net.imagej.omero.OMEROService
Downloads the ROIs associated with the given imageID from OMERO, and returns them as a ROITree.
downloadTable(OMEROLocation, long) - Method in class net.imagej.omero.DefaultOMEROService
 
downloadTable(OMEROLocation, long) - Method in interface net.imagej.omero.OMEROService
Downloads the table with the given ID from OMERO, storing the result into a new ImageJ Table.
downloadTables(OMEROLocation, long) - Method in class net.imagej.omero.DefaultOMEROService
 
downloadTables(OMEROLocation, long) - Method in interface net.imagej.omero.OMEROService
Downloads all tables associated with the given image ID in OMERO.
draw(Graphics2D) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
draw() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
draw(Graphics2D) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
drawDot(long, long) - Method in class net.imagej.DrawingTool
Draws a dot in the current UV plane at specified UV coordinates.
drawFill(Graphics2D) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
drawFill(Graphics2D) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
drawFill(Graphics2D) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
drawIcon() - Method in class net.imagej.plugins.tools.AbstractColorTool
 
DrawingTool - Class in net.imagej
Draws data across all channels in an orthoplane of a Dataset.
DrawingTool(Dataset, RenderingService) - Constructor for class net.imagej.DrawingTool
Creates a DrawingTool to modify a specified Dataset.
drawLine(long, long, long, long) - Method in class net.imagej.DrawingTool
Draws a line from (u1,v1) to (u2,v2).
drawNames(boolean) - Method in class net.imagej.omero.legacy.LazyOverlay
 
drawOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
 
drawOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
 
drawOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in interface net.imagej.display.OverlayService
Draws the outline of a given overlay in a display using the set of channel information provided.
drawOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in interface net.imagej.display.OverlayService
Draws the outline of a given overlay in a dataset using the set of channel information provided.
drawPixel(long, long) - Method in class net.imagej.DrawingTool
Draws a pixel in the current UV plane at specified UV coordinates.
drawRect(long, long, long, long) - Method in class net.imagej.DrawingTool
Draws the outline of a rectangle in the current UV plane.
drawStroke(Graphics2D) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
drawStroke(Graphics2D) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
drawStroke(Graphics2D) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
drawText(long, long, String, TextRenderer.TextJustification) - Method in class net.imagej.DrawingTool
Draws a line of text along the U axis
drop(File, Display<?>) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
 
DropboxURLMapper - Class in net.imagej.updater.util
Maps pseudo-DropBox URLs to valid ones.
DropboxURLMapper(UpdaterUtil) - Constructor for class net.imagej.updater.util.DropboxURLMapper
Constructs a Dropbox URL mapper for use in a specific Util instance.
dropboxURLMapper - Variable in class net.imagej.updater.util.UpdaterUtil
 
dropSingletonDimensionsView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Removes all unit dimensions (dimensions with size one) from the RandomAccessibleInterval
dummy() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter
Returns true iff the linked LegacyService is not fully active.
DummyRenderingService - Class in net.imagej.render
No-op implementation of text rendering service.
DummyRenderingService() - Constructor for class net.imagej.render.DummyRenderingService
 
DummyScreenCaptureService - Class in net.imagej.display
A No-op implementation of the ScreenCaptureService interface.
DummyScreenCaptureService() - Constructor for class net.imagej.display.DummyScreenCaptureService
 
DummyTextRenderer - Class in net.imagej.render
A dummy implementation of the TextRenderer interface.
DummyTextRenderer() - Constructor for class net.imagej.render.DummyTextRenderer
 
duplicate() - Method in interface net.imagej.Dataset
Creates a copy of the dataset.
duplicate() - Method in class net.imagej.DefaultDataset
 
duplicate() - Method in class net.imagej.omero.legacy.LazyOverlay
 
duplicate() - Method in class net.imagej.overlay.AbstractOverlay
 
duplicate() - Method in class net.imagej.overlay.BinaryMaskOverlay
 
duplicate() - Method in interface net.imagej.overlay.Overlay
 
duplicate(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
 
duplicate(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService
Creates a copy of an existing ImageDisplay.
duplicateBlank() - Method in interface net.imagej.Dataset
Creates a copy of the dataset, but without copying any pixel values.
duplicateBlank() - Method in class net.imagej.DefaultDataset
 
DuplicateImage - Class in net.imagej.plugins.commands.imglib
Duplicates data from one input display to an output display.
DuplicateImage() - Constructor for class net.imagej.plugins.commands.imglib.DuplicateImage
 
DuplicateImageContext - Class in net.imagej.plugins.commands.imglib
Context menu plugin for Duplicate command.
DuplicateImageContext() - Constructor for class net.imagej.plugins.commands.imglib.DuplicateImageContext
 
duplicateSelectedCompositePlane(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
 
duplicateSelectedCompositePlane(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService
Creates a multichannel copy of the currently selected 2d region of an ImageDisplay.
duplicateSelectedPlane(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
 
duplicateSelectedPlane(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService
Creates a copy of the currently selected 2d region of an ImageDisplay.
duplicateSelectedPlanes(ImageDisplay) - Method in class net.imagej.sampler.DefaultSamplerService
 
duplicateSelectedPlanes(ImageDisplay) - Method in interface net.imagej.sampler.SamplerService
Creates a copy of all the planes bounded by the currently selected 2d region of an ImageDisplay.

E

E() - Method in class net.imagej.types.BigComplex
Fills self with the representation of e for the given type.
EasterEgg - Class in net.imagej.plugins.commands.app
Mysterious!
EasterEgg() - Constructor for class net.imagej.plugins.commands.app.EasterEgg
 
easy - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
easyMode - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
eccentricity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
eccentricity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
EditAxes - Class in net.imagej.plugins.commands.restructure
Changes the types and calibrations of the existing axes of a Dataset.
EditAxes() - Constructor for class net.imagej.plugins.commands.restructure.EditAxes
 
EIGHT - Static variable in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
 
EllipseJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for ellipse overlays.
EllipseJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
EllipseOverlay - Class in net.imagej.overlay
An ellipse bounded by an axis-aligned rectangle, backed by an EllipseRegionOfInterest.
EllipseOverlay() - Constructor for class net.imagej.overlay.EllipseOverlay
 
EllipseOverlay(Context) - Constructor for class net.imagej.overlay.EllipseOverlay
 
EllipsoidToOvalRoiConverter - Class in net.imagej.legacy.convert.roi.ellipsoid
Converts an Ellipsoid to an OvalRoi.
EllipsoidToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
 
EllipsoidWrapper - Class in net.imagej.legacy.convert.roi.ellipsoid
A OvalRoi with an associated WritableEllipsoid.
EllipsoidWrapper(WritableEllipsoid) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper
 
enableIJ1PluginDirs(boolean) - Method in class imagej.patcher.LegacyHooks
Deprecated.
 
enableIJ1PluginDirs(boolean) - Method in class net.imagej.patcher.LegacyHooks
 
enableYesNoCancel() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
enableYesNoCancel(String, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
enableYesNoCancel() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
enableYesNoCancel(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
encode(RenderedImage) - Static method in class net.imagej.notebook.Images
Converts the given RenderedImage into a stream of PNG bytes.
encode(RenderedImage, String) - Static method in class net.imagej.notebook.Images
Converts the given RenderedImage into a stream of bytes.
end - Static variable in class net.imagej.updater.util.StderrProgress
 
endDocument() - Method in class net.imagej.updater.POMParser
 
endDocument() - Method in class net.imagej.updater.XMLFileReader
 
endElement(String, String, String) - Method in class net.imagej.updater.POMParser
 
endElement(String, String, String) - Method in class net.imagej.updater.XMLFileReader
 
endpointOne() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
 
endpointOne() - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
 
endpointTwo() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
 
endpointTwo() - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
 
endsWith(String) - Method in class net.imagej.updater.FilesCollection
 
entropy(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
entropy(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
EnumeratedAxis - Class in net.imagej.axis
A CalibratedAxis whose coordinate values are explicitly enumerated by a list.
EnumeratedAxis(AxisType, List<? extends Number>) - Constructor for class net.imagej.axis.EnumeratedAxis
Creates an axis whose calibrated values are defined by the given list of values.
EnumeratedAxis(AxisType, double[]) - Constructor for class net.imagej.axis.EnumeratedAxis
Creates an axis whose calibrated values are defined by the given values array.
EnumeratedAxis(AxisType, String, double[]) - Constructor for class net.imagej.axis.EnumeratedAxis
Creates an axis whose calibrated values are defined by the given values array.
Environmental - Interface in net.imagej.ops
An interface for objects which have an OpEnvironment.
equal(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
equal(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace
 
equal(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
 
equal(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
 
equal(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
 
equal(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
 
equal(T, Object, Object) - Method in class net.imagej.ops.logic.LogicNamespace
 
equals(Object) - Method in class net.imagej.axis.AbstractCalibratedAxis
 
equals(Object) - Method in class net.imagej.axis.EnumeratedAxis
 
equals(Object) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
 
equals(Object) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
equals(Object) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
 
equals(Object) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
 
equals(Object) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
 
equals(Object) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper
 
equals(Object) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
 
equals(Object) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper
 
equals(Object) - Method in class net.imagej.omero.OMEROLocation
 
equals(Object) - Method in class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse
 
equals(Object) - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
 
equals(Object) - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask
 
equals(Object) - Method in class net.imagej.omero.roi.point.DefaultOMEROPoint
 
equals(Object) - Method in class net.imagej.omero.roi.polyshape.AbstractOMEROPolygon
 
equals(Object) - Method in class net.imagej.omero.roi.polyshape.DefaultOMEROPolyline
 
equals(Object) - Method in class net.imagej.omero.roi.rectangle.AbstractOMERORectangle
 
equals(Object) - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
 
equals(Object) - Method in class net.imagej.ops.OpInfo
 
equals(Object) - Method in class net.imagej.ops.OpRef
 
equals(Object) - Method in class net.imagej.tensorflow.TensorFlowVersion
 
equals(File, URL) - Static method in class net.imagej.updater.DllFile
Compares two .dll files, skipping time stamp entries, checksums and the likes.
equals(URLConnection) - Method in class net.imagej.updater.DllFile
Determines whether two .dll files are functionally equal.
equals(Object) - Method in class net.imagej.updater.FileObject.Version
 
equals(FileObject.Version) - Method in class net.imagej.updater.FileObject.Version
 
equals(Object) - Method in class net.imagej.updater.UpdateSite
 
equation(String) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "equation" operation on the given arguments.
equation(IterableInterval<T>, String) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "equation" operation on the given arguments.
equation(IterableInterval<T>, UnaryFunctionOp<long[], Double>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "equation" operation on the given arguments.
equation(IterableInterval<T>, DoubleBinaryOperator) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "equation" operation on the given arguments.
EquationDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills a region of a Dataset with the point by point calculation of a user specified equation.
EquationDataValues() - Constructor for class net.imagej.plugins.commands.assign.EquationDataValues
 
EquationOp<T> - Interface in net.imagej.ops.image.equation
An "equation" operation which computes image values from interval coordinates using an equation.
erode(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
erode(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
erode(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
erode(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
erode(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
erode(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
erode(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>, boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
ErodeBinaryImage - Class in net.imagej.plugins.commands.binary
Does a morphological erode operation on a binary image.
ErodeBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.ErodeBinaryImage
 
err - Variable in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
error(Throwable) - Method in class imagej.patcher.EssentialLegacyHooks
Deprecated.
 
error(Throwable) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Shows an exception.
error(Throwable) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
error(Throwable) - Method in class net.imagej.patcher.EssentialLegacyHooks
 
error(Throwable) - Method in class net.imagej.patcher.LegacyHooks
Shows an exception.
error(String) - Method in class net.imagej.ui.swing.updater.FileTable
 
error(String) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
error(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
error(String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
error(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
error - Variable in class net.imagej.updater.util.Downloader
 
error(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
error(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
error(SAXParseException) - Method in class net.imagej.updater.XMLFileErrorHandler
 
errorIfDebian() - Static method in class net.imagej.ui.swing.updater.ImageJUpdater
If this seems to be the Debian packaged version of ImageJ, then produce an error and return true.
errorIfNetworkInaccessible(LogService) - Static method in class net.imagej.ui.swing.updater.ImageJUpdater
If there is no network connection, then produce an error and return true.
errorMessage - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
errorMessage - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
escapeCancels(JDialog) - Static method in class net.imagej.ui.swing.updater.SitesDialog
 
EssentialLegacyHooks - Class in imagej.patcher
Deprecated.
EssentialLegacyHooks() - Constructor for class imagej.patcher.EssentialLegacyHooks
Deprecated.
 
EssentialLegacyHooks - Class in net.imagej.patcher
The base LegacyHooks to be used in the patched ImageJ 1.x.
EssentialLegacyHooks() - Constructor for class net.imagej.patcher.EssentialLegacyHooks
 
EulerCharacteristic26N<B extends BooleanType<B>> - Class in net.imagej.ops.topology.eulerCharacteristic
An Op which calculates the euler characteristic (χ) of the given 3D binary image.
Here Euler characteristic is defined as χ = β_0 - β_1 + β_2, where β_i are so called Betti numbers β_0 = number of separate particles β_1 = number of handles β_2 = number enclosed cavities
EulerCharacteristic26N() - Constructor for class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
 
eulerCharacteristic26N(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.TopologyNamespace
 
eulerCharacteristic26N(DoubleType, RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.TopologyNamespace
 
EulerCharacteristic26NFloating<B extends BooleanType<B>> - Class in net.imagej.ops.topology.eulerCharacteristic
An Op which calculates the euler characteristic (χ) of the given binary image.
EulerCharacteristic26NFloating() - Constructor for class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
 
eulerCharacteristic26NFloating(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.TopologyNamespace
 
eulerCharacteristic26NFloating(DoubleType, RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.TopologyNamespace
 
EulerCorrection<B extends BooleanType<B>> - Class in net.imagej.ops.topology.eulerCharacteristic
An Op which calculates the correction needed to approximate the contribution of the image to the Euler characteristic χ of the whole image.
EulerCorrection() - Constructor for class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
 
eulerCorrection(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.TopologyNamespace
 
eulerCorrection(DoubleType, RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.TopologyNamespace
 
EulerCorrection.Traverser<B extends BooleanType<B>> - Class in net.imagej.ops.topology.eulerCharacteristic
A convenience class for passing parameters
Eval() - Constructor for class net.imagej.legacy.LegacyCommandline.Eval
 
eval(String) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine
 
eval(Reader) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine
 
eval(String) - Method in interface net.imagej.ops.OpEnvironment
Executes the "eval" operation on the given arguments.
eval(String, Map<String, Object>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "eval" operation on the given arguments.
evaluate(double) - Method in class net.imagej.ops.features.zernike.helper.Polynom
return the value of the polynom in a given point.
exclude(String, String) - Static method in class net.imagej.updater.util.DependencyAnalyzer
Exclude some dependencies.
exclusiveOr(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
executable(FileObject) - Method in class net.imagej.ui.swing.updater.FileDetails
 
executable - Variable in class net.imagej.updater.FileObject
 
execute(Operator, Object...) - Method in class net.imagej.ops.eval.OpEvaluator
Executes the given operation with the specified argument list.
execute(String, Object...) - Method in class net.imagej.ops.eval.OpEvaluator
Executes the given op with the specified argument list.
execute(Operator, Deque<Object>) - Method in class net.imagej.ops.eval.OpEvaluator
 
execute(long, long, long) - Method in interface net.imagej.ops.thread.chunker.Chunk
Solve the subproblem for the element at startIndex, increase the index by the given stepSize and repeat numSteps.
exists(File) - Method in class net.imagej.updater.Checksummer
 
exp(double) - Method in class net.imagej.ops.math.MathNamespace
 
exp(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Exp() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Exp
 
expand(double, double) - Method in class net.imagej.interval.CombinedRealInterval.MinMax
 
expandDims(Output<T>, Output<U>) - Method in class net.imagej.tensorflow.GraphBuilder
 
expandDims(Output<T>, Output<U>, String) - Method in class net.imagej.tensorflow.GraphBuilder
 
ExpDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by exponentiating an input Dataset.
ExpDataValues() - Constructor for class net.imagej.plugins.commands.assign.ExpDataValues
 
expMinusOne(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
ExpMinusOne() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.ExpMinusOne
 
exponent() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
exponent() - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse
 
ExponentialAxis - Class in net.imagej.axis
ExponentialAxis is a CalibratedAxis that scales raw values by the equation y = a + b * exp(c + d*x).
ExponentialAxis() - Constructor for class net.imagej.axis.ExponentialAxis
 
ExponentialAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.ExponentialAxis
 
ExponentialRecoveryAxis - Class in net.imagej.axis
ExponentialRecoveryAxis is a CalibratedAxis that scales raw values by the equation y = a + b * (1 - exp(c + d*x)).
ExponentialRecoveryAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.ExponentialRecoveryAxis
 
extend(RandomAccessibleInterval<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Static method in class net.imagej.ops.special.chain.RAIs
Extends an input using an OutOfBoundsFactory, if available, otherwise returns the unchanged input.
extendBorderView(F) - Method in class net.imagej.ops.transform.TransformNamespace
Extend a RandomAccessibleInterval with an out-of-bounds strategy to repeat border pixels.
extendMirrorDoubleView(F) - Method in class net.imagej.ops.transform.TransformNamespace
Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
extendMirrorSingleView(F) - Method in class net.imagej.ops.transform.TransformNamespace
Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
extendPeriodicView(F) - Method in class net.imagej.ops.transform.TransformNamespace
Extend a RandomAccessibleInterval with a periodic out-of-bounds strategy.
extendRandomView(F, double, double) - Method in class net.imagej.ops.transform.TransformNamespace
Extend a RandomAccessibleInterval with a random-value out-of-bounds strategy.
extendValueView(F, T) - Method in class net.imagej.ops.transform.TransformNamespace
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendView(F, OutOfBoundsFactory<T, ? super F>) - Method in class net.imagej.ops.transform.TransformNamespace
Extend a RandomAccessibleInterval with an out-of-bounds strategy.
extendZeroView(F) - Method in class net.imagej.ops.transform.TransformNamespace
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy where the constant value is the zero-element of the data type.
extensions - Static variable in class net.imagej.updater.Checksummer
 
Extents - Class in net.imagej
This class wraps a pair of min and max dimensions encoded as long[]'s.
Extents(long[]) - Constructor for class net.imagej.Extents
Constructor that takes a dimensional extent and sets min to a zero origin and each max dim i to dims[i]-1.
Extents(long[], long[]) - Constructor for class net.imagej.Extents
Constructor that takes min and max extents.
extractHoles(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
extractHoles(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
extractHoles(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
extractHoles(RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 

F

Facet - Interface in net.imagej.ops.geom.geom3d.mesh
 
FACET_BYTES - Static variable in class net.imagej.mesh.io.stl.STLMeshIO
 
FACET_START - Static variable in class net.imagej.mesh.io.stl.STLMeshIO
 
factor - Variable in class net.imagej.ops.convert.scale.ScaleRealTypes
 
factorAdjust(double, double, int, double) - Static method in class net.imagej.plugins.commands.display.SpectralComposite
 
factory() - Method in interface net.imagej.Dataset
 
factory() - Method in class net.imagej.DefaultDataset
 
factory() - Method in class net.imagej.ImgPlus
 
factory() - Method in class net.imagej.table.ResultsImg
 
fatalError(SAXParseException) - Method in class net.imagej.updater.XMLFileErrorHandler
 
feretsAngle(Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.GeomNamespace
 
feretsAngle(DoubleType, Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.GeomNamespace
 
feretsDiameter(Polygon2D, double) - Method in class net.imagej.ops.geom.GeomNamespace
 
feretsDiameter(DoubleType, Polygon2D, double) - Method in class net.imagej.ops.geom.GeomNamespace
 
feretsDiameter(Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.GeomNamespace
 
feretsDiameter(DoubleType, Pair<RealLocalizable, RealLocalizable>) - Method in class net.imagej.ops.geom.GeomNamespace
 
fft(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<T>, long...) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<T>, long[], boolean) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<T>, long[], boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<T>, long[], boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, C) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "fft" operation on the given arguments.
fft(RandomAccessibleInterval<C>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "fft" operation on the given arguments.
FFTMethodsLinearFFTFilterC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter
Convolve op for (@link RandomAccessibleInterval)
FFTMethodsLinearFFTFilterC() - Constructor for class net.imagej.ops.filter.FFTMethodsLinearFFTFilterC
 
FFTMethodsOpC<T extends RealType<T>,C extends ComplexType<C>> - Class in net.imagej.ops.filter.fft
Forward FFT computer that operates on an RAI and wraps FFTMethods.
FFTMethodsOpC() - Constructor for class net.imagej.ops.filter.fft.FFTMethodsOpC
 
FFTMethodsOpF<T extends RealType<T>,C extends ComplexType<C>> - Class in net.imagej.ops.filter.fft
Function that uses FFTMethods to perform a forward FFT
FFTMethodsOpF() - Constructor for class net.imagej.ops.filter.fft.FFTMethodsOpF
 
FFTMethodsUtility - Class in net.imagej.ops.filter.fft
Utility class that interacts with FFTMethods
FFTMethodsUtility() - Constructor for class net.imagej.ops.filter.fft.FFTMethodsUtility
 
fftSize(Dimensions, boolean, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
 
fftSize(Dimensions, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
 
FgColorTool - Class in net.imagej.plugins.tools
The tool that displays the current foreground color.
FgColorTool() - Constructor for class net.imagej.plugins.tools.FgColorTool
 
Field(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Field
 
FigureCreatedEvent - Class in net.imagej.ui.swing.overlay
An event that reports the creation of a JHotDraw Figure, linked to an ImageJ OverlayView in a particular ImageDisplay.
FigureCreatedEvent(OverlayView, Figure, ImageDisplay) - Constructor for class net.imagej.ui.swing.overlay.FigureCreatedEvent
 
FigureView - Interface in net.imagej.ui.swing.viewer.image
A figure view renders a DataView with a linked JHotDraw Figure.
file - Variable in class net.imagej.updater.UploadableFile
 
FileDetails - Class in net.imagej.ui.swing.updater
TODO
FileDetails(UpdaterFrame) - Constructor for class net.imagej.ui.swing.updater.FileDetails
 
fileDetails - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
fileExists(String) - Method in class net.imagej.updater.FilesCollection
 
FileFilter(List<String>) - Constructor for class net.imagej.updater.CommandLine.FileFilter
 
Filename() - Constructor for class net.imagej.legacy.LegacyCommandline.Filename
 
filename - Variable in class net.imagej.ui.swing.updater.DiffFile
 
filename - Variable in class net.imagej.updater.Conflicts.Conflict
 
filename - Variable in class net.imagej.updater.Dependency
 
filename - Variable in class net.imagej.updater.FileObject
 
filename - Variable in class net.imagej.updater.FileObject.Version
 
filename - Variable in class net.imagej.updater.UploadableFile
 
fileNames - Variable in class net.imagej.updater.CommandLine.FileFilter
 
FileObject - Class in net.imagej.updater
This class represents a file handled by the updater.
FileObject(String, String, long, String, long, FileObject.Status) - Constructor for class net.imagej.updater.FileObject
 
FileObject.Action - Enum in net.imagej.updater
 
FileObject.Status - Enum in net.imagej.updater
 
FileObject.Version - Class in net.imagej.updater
 
files - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
files - Variable in class net.imagej.ui.swing.updater.FileTable
 
files - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
files - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
files - Variable in class net.imagej.updater.CommandLine
 
filesChanged() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
FilesCollection - Class in net.imagej.updater
This class represents the database of available FileObjects.
FilesCollection(File) - Constructor for class net.imagej.updater.FilesCollection
This constructor takes the imagejRoot primarily for testing purposes.
FilesCollection(LogService, File) - Constructor for class net.imagej.updater.FilesCollection
This constructor takes the imagejRoot primarily for testing purposes.
FilesCollection.DependencyMap - Class in net.imagej.updater
 
FilesCollection.Filter - Interface in net.imagej.updater
 
FilesCollection.FilteredIterator - Class in net.imagej.updater
 
filesize - Variable in class net.imagej.updater.FileObject
 
filesize - Variable in class net.imagej.updater.UploadableFile
 
fileSummary - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
FilesUploader - Class in net.imagej.updater
This class is responsible for writing updates to server, upon given the updated file records.
FilesUploader(FilesCollection, String) - Constructor for class net.imagej.updater.FilesUploader
FilesUploader(UploaderService, FilesCollection, String) - Constructor for class net.imagej.updater.FilesUploader
FilesUploader(UploaderService, FilesCollection, String, Progress) - Constructor for class net.imagej.updater.FilesUploader
 
FilesUploader.DbXmlFile - Class in net.imagej.updater
 
FilesUploader.VerifyTimestamp - Class in net.imagej.updater
 
FileTable - Class in net.imagej.ui.swing.updater
This class's role is to be in charge of how the Table should be displayed.
FileTable(UpdaterFrame) - Constructor for class net.imagej.ui.swing.updater.FileTable
 
FileTable.FileTableModel - Class in net.imagej.ui.swing.updater
 
FileTableModel(FilesCollection) - Constructor for class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
fileToRow - Variable in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
FileUploader - Class in net.imagej.updater
This FileUploader is highly specialized to upload files and XML information over to ImageJ2 Update sites.
FileUploader() - Constructor for class net.imagej.updater.FileUploader
 
fill() - Method in class net.imagej.DrawingTool
Fills the current UV plane.
fill(Iterable<T>, T) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "fill" operation on the given arguments.
fill4(long, long, long[]) - Method in class net.imagej.FloodFiller
Does a 4-connected flood fill using the current fill/draw value.
fill8(long, long, long[]) - Method in class net.imagej.FloodFiller
Does an 8-connected flood fill using the current fill/draw value.
fillCircle(long, long) - Method in class net.imagej.DrawingTool
Draws a filled circle in the current UV plane centered at the specified UV coordinates.
FillDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills the selected region of an input Dataset with the foreground values.
FillDataValues() - Constructor for class net.imagej.plugins.commands.assign.FillDataValues
 
FillHoles<T extends BooleanType<T>> - Class in net.imagej.ops.commands.morphology
This command applies the Fill Holes operation to a binary input image.
FillHoles() - Constructor for class net.imagej.ops.commands.morphology.FillHoles
 
fillHoles(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
fillHoles(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
fillHoles(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
fillMaskBackground() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets whether to fill background pixels of binary mask or not.
fillMaskForeground() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets whether to fill foreground pixels of binary mask or not.
fillMetadataFromJar(FileObject, File) - Static method in class net.imagej.updater.POMParser
 
fillOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
 
fillOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in class net.imagej.display.DefaultOverlayService
 
fillOverlay(Overlay, ImageDisplay, ChannelCollection) - Method in interface net.imagej.display.OverlayService
Draws and fills the outline of a given overlay in a display using the set of channel information provided.
fillOverlay(Overlay, Dataset, Position, ChannelCollection) - Method in interface net.imagej.display.OverlayService
Draws and fills the outline of a given overlay in a dataset using the set of channel information provided.
fillRect(long, long, long, long) - Method in class net.imagej.DrawingTool
Draws a filled rectangle in the current UV plane.
filter() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "filter" namespace.
filter(FilesCollection.Filter, Iterable<FileObject>) - Static method in class net.imagej.updater.FilesCollection
 
filter(String, Iterable<FileObject>) - Static method in class net.imagej.updater.FilesCollection
 
filter(FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection
 
filter(InputStream, boolean) - Static method in class net.imagej.updater.util.FilterManifest
 
filter(BufferedReader, boolean) - Static method in class net.imagej.updater.util.FilterManifest
 
filterArity(List<OpCandidate>, int) - Static method in interface net.imagej.ops.special.SpecialOp
Extracts a sublist of op candidates with a particular arity.
FilterManifest - Class in net.imagej.updater.util
A helper class for the Checksummer.
FilterManifest(InputStream) - Constructor for class net.imagej.updater.util.FilterManifest
 
FilterManifest(InputStream, boolean) - Constructor for class net.imagej.updater.util.FilterManifest
 
FilterManifest.Skip - Enum in net.imagej.updater.util
 
filterMatches(List<OpCandidate>) - Method in class net.imagej.ops.DefaultOpMatchingService
 
filterMatches(List<OpCandidate>) - Method in interface net.imagej.ops.OpMatchingService
Filters a list of ops to those matching the given arguments.
FilterNamespace - Class in net.imagej.ops.filter
The filter namespace contains ops that filter data.
FilterNamespace() - Constructor for class net.imagej.ops.filter.FilterNamespace
 
finalizeRecording() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
find(String) - Method in class net.imagej.server.services.DefaultObjectService
 
find(String) - Method in interface net.imagej.server.services.ObjectService
Retrieves the Object with the given ID.
findCandidates(OpEnvironment, OpRef) - Method in class net.imagej.ops.DefaultOpMatchingService
 
findCandidates(OpEnvironment, List<OpRef>) - Method in class net.imagej.ops.DefaultOpMatchingService
 
findCandidates(OpEnvironment, OpRef) - Method in interface net.imagej.ops.OpMatchingService
Builds a list of candidate ops which might match the given op reference.
findCandidates(OpEnvironment, List<OpRef>) - Method in interface net.imagej.ops.OpMatchingService
Builds a list of candidate ops which might match one of the given op references.
findCastLevels(Class<?>, Class<?>) - Static method in class net.imagej.ops.OpMatchingUtil
Finds the levels of casting between origin and dest.
findClass(String) - Method in class imagej.patcher.LegacyClassLoader
Deprecated.
 
findClass(String) - Method in class net.imagej.patcher.LegacyClassLoader
 
findCommands() - Method in class net.imagej.legacy.command.LegacyCommandFinder
 
FindEdges - Class in net.imagej.plugins.commands.neigh
Runs the Find Edges plugin
FindEdges() - Constructor for class net.imagej.plugins.commands.neigh.FindEdges
 
findIndex(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
 
findIndex(Overlay) - Method in class net.imagej.display.OverlayInfoList
 
findLUTs() - Method in class net.imagej.lut.DefaultLUTService
 
findLUTs() - Method in class net.imagej.lut.LUTFinder
Deprecated.
findLUTs() - Method in interface net.imagej.lut.LUTService
Finds the URLs of the LUT files known to ImageJ.
findMatch(OpEnvironment, OpRef) - Method in class net.imagej.ops.DefaultOpMatchingService
 
findMatch(OpEnvironment, List<OpRef>) - Method in class net.imagej.ops.DefaultOpMatchingService
 
findMatch(OpEnvironment, OpRef) - Method in interface net.imagej.ops.OpMatchingService
Finds and initializes the best module matching the given op name and/or type + arguments.
findMatch(OpEnvironment, List<OpRef>) - Method in interface net.imagej.ops.OpMatchingService
Finds and initializes the best module matching any of the given op name and/or type + arguments.
findModule(ModuleService, String) - Static method in class net.imagej.omero.ModuleUtils
Looks up an Identifiable ImageJ module by its identifier.
findNext() - Method in class net.imagej.updater.FilesCollection.FilteredIterator
 
findPatternSwitches(boolean[]) - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
Returns the amount of switches from foreground to background occurring in the circle around vals[1]
findResources(String, String) - Static method in class net.imagej.util.AppUtils
Finds URLs of resources known to ImageJ.
findResources(String, Iterable<URL>) - Static method in class net.imagej.util.AppUtils
Finds URLs of resources known to ImageJ.
finishCreation(BezierFigure, DrawingView) - Method in class net.imagej.ui.swing.overlay.IJBezierTool
 
finishRecording() - Method in class net.imagej.legacy.IJ1Helper
Completes recording of a command.
FIRE - Static variable in class net.imagej.display.ColorTables
 
fireFileChanged(FileObject) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
fireFileChanged(FileObject) - Method in class net.imagej.ui.swing.updater.FileTable
 
fireRowChanged(int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
first() - Method in class net.imagej.Position
Sets the Position to its first state (all dimension positions to min values).
firstElement() - Method in class net.imagej.DefaultDataset
 
firstElement() - Method in class net.imagej.ImgPlus
 
firstElement() - Method in class net.imagej.ops.slice.SlicesII
 
firstElement() - Method in class net.imagej.table.ResultsImg
 
firstGuess(RandomAccessibleInterval<I>, O, Dimensions) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
fixDisabledAlgorithms() - Static method in class net.imagej.omero.SSLUtils
Deprecated.
fixImageJUserSiteProtocol(String) - Static method in class net.imagej.updater.util.HTTPSUtil
This method returns ImageJ user site URLs in the correct protocol (HTTPS or HTTPS), depending on what's supported.
flatIterableView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Flatten - Class in net.imagej.plugins.commands.display
Captures the current view of an ImageDisplay to a color merged Dataset.
Flatten() - Constructor for class net.imagej.plugins.commands.display.Flatten
 
FlipAxis - Class in net.imagej.plugins.commands.restructure
Flips the planes of a Dataset along a user specified axis.
FlipAxis() - Constructor for class net.imagej.plugins.commands.restructure.FlipAxis
 
FlipHorizontally - Class in net.imagej.plugins.commands.rotate
Modifies an input Dataset by flipping its pixels horizontally.
FlipHorizontally() - Constructor for class net.imagej.plugins.commands.rotate.FlipHorizontally
 
FlipVertically - Class in net.imagej.plugins.commands.rotate
Modifies an input Dataset by flipping its pixels vertically.
FlipVertically() - Constructor for class net.imagej.plugins.commands.rotate.FlipVertically
 
Float32() - Constructor for class net.imagej.ops.convert.ConvertImages.Float32
 
float32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
float32(Img<FloatType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
float32(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
float32(FloatType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
float32(long) - Static method in class net.imagej.ops.convert.Types
 
float32(double) - Static method in class net.imagej.ops.convert.Types
 
float32(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
float32(boolean) - Static method in class net.imagej.ops.convert.Types
 
Float64() - Constructor for class net.imagej.ops.convert.ConvertImages.Float64
 
float64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
float64(Img<DoubleType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
float64(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
float64(DoubleType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
float64(long) - Static method in class net.imagej.ops.convert.Types
 
float64(double) - Static method in class net.imagej.ops.convert.Types
 
float64(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
float64(boolean) - Static method in class net.imagej.ops.convert.Types
 
FloatAbs() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatAbs
 
FloatAdd() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatAdd
 
FloatDivide() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatDivide
 
FloatEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatEqual
 
FloatGreaterThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatGreaterThan
 
FloatGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatGreaterThanOrEqual
 
FloatLessThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatLessThan
 
FloatLessThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatLessThanOrEqual
 
FloatMax() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatMax
 
FloatMin() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatMin
 
FloatMultiply() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatMultiply
 
FloatNegate() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatNegate
 
FloatNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.FloatNotEqual
 
FloatRemainder() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatRemainder
 
FloatRound() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatRound
 
FloatSignum() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatSignum
 
FloatSubtract() - Constructor for class net.imagej.ops.math.PrimitiveMath.FloatSubtract
 
FloatTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.FloatTableToResultsTable
 
FloatToFloatTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverters.FloatToFloatTypeConverter
 
floodFill(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Localizable, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
floodFill(RandomAccessibleInterval<T>, Localizable, Shape) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
FloodFiller - Class in net.imagej
This class, which does flood filling, is used by the FloodFillTool.
FloodFiller(DrawingTool) - Constructor for class net.imagej.FloodFiller
Constructs a FloodFiller from a given DrawingTool.
FloodFillTool - Class in net.imagej.plugins.tools
Tool implementation for flood fill.
FloodFillTool() - Constructor for class net.imagej.plugins.tools.FloodFillTool
 
FloodFillToolConfig - Class in net.imagej.plugins.tools
Implements the configuration code for FloodFillTool.
FloodFillToolConfig() - Constructor for class net.imagej.plugins.tools.FloodFillToolConfig
 
floor(double) - Method in class net.imagej.ops.math.MathNamespace
 
floor(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Floor() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Floor
 
focusGained(FocusEvent) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
focusGained(FocusEvent) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
FocusHandler - Class in net.imagej.plugins.tools
Brings the main application window into focus when ENTER is pressed.
FocusHandler() - Constructor for class net.imagej.plugins.tools.FocusHandler
 
focusLost(FocusEvent) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
focusLost(FocusEvent) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
FocusSearchBar - Class in net.imagej.legacy.search
Command which focuses the ImageJ search bar.
FocusSearchBar() - Constructor for class net.imagej.legacy.search.FocusSearchBar
 
FONT - Static variable in class net.imagej.ui.swing.updater.DiffView
 
FONT_SIZE - Static variable in class net.imagej.ui.swing.updater.DiffView
 
format(String) - Static method in class net.imagej.updater.UpdateSite
 
forUpdateSite(String) - Method in class net.imagej.updater.FilesCollection
 
forUpdateSite(String, boolean) - Method in class net.imagej.updater.FilesCollection
 
forUpload - Variable in class net.imagej.ui.swing.updater.ResolveDependencies
 
FOUR - Static variable in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
 
FrangiVesselness<T extends RealType<T>> - Class in net.imagej.ops.commands.filter
This command applied the Frangi Vesselness filter operation onto an image, allowing users to specify: 1) The scales desired for the filter application 2) The physical spacing between image data points 3) Whether or not the gaussian filter should be performed at each scale before the filter runs.
FrangiVesselness() - Constructor for class net.imagej.ops.commands.filter.FrangiVesselness
 
frangiVesselness(RandomAccessibleInterval<U>, RandomAccessibleInterval<T>, double[], int) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "Frangi Vesselness" filter operation on the given arguments.
freeze(ClassLoader) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
FromOverlayManager - Class in net.imagej.plugins.commands.overlay
After running this plugin the current display will now reference (and show) the overlays that are currently selected in the Overlay Manager.
FromOverlayManager() - Constructor for class net.imagej.plugins.commands.overlay.FromOverlayManager
 
frozen - Static variable in class net.imagej.launcher.ClassLoaderPlus
 
function(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
function(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
function(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
function(OpEnvironment, Class<? extends Op>, I, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
Functions - Class in net.imagej.ops.special.function
Utility class for looking up function ops in a type-safe way.
fwd(int) - Method in class net.imagej.display.AbstractDataView
 
fwd(int) - Method in class net.imagej.display.DefaultImageDisplay
 
fwd(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
fwd() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
fwd() - Method in class net.imagej.Position
Moves the Position forward by one step.
fwd(int) - Method in class net.imagej.Position
Moves the Position forward one step in specified dimension.

G

gamma(O, I, double) - Method in class net.imagej.ops.math.MathNamespace
 
GammaConstant() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.GammaConstant
 
GammaDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset with the result of applying the gamma function to an input Dataset.
GammaDataValues() - Constructor for class net.imagej.plugins.commands.assign.GammaDataValues
 
GammaVariateAxis - Class in net.imagej.axis
GammaVariateAxis is a CalibratedAxis that scales raw values by the equation y = a * (x-b)^c*exp(-(x-b)/d).
GammaVariateAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.GammaVariateAxis
 
gauss(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double[], OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double...) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<T>, double...) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<V>, RandomAccessibleInterval<T>, double, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "gauss" operation on the given arguments.
gauss(RandomAccessibleInterval<T>, double) - Method in class net.imagej.ops.filter.FilterNamespace
 
gauss(RandomAccessibleInterval<V>, RandomAccessible<T>, double...) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "gauss" operation on the given arguments.
GaussianAxis - Class in net.imagej.axis
GaussianAxis is a CalibratedAxis that scales raw values by the equation y = a + (b-a)*exp(-(x-c)*(x-c)/(2*d*d)).
GaussianAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.GaussianAxis
 
GaussianBlur<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib
Does an in place Gaussian blur noise reduction operation on a Dataset .
GaussianBlur() - Constructor for class net.imagej.plugins.commands.imglib.GaussianBlur
 
GaussRAISingleSigma<T extends NumericType<T> & NativeType<T>> - Class in net.imagej.ops.filter.gauss
Gaussian filter which can be called with single sigma, i.e.
GaussRAISingleSigma() - Constructor for class net.imagej.ops.filter.gauss.GaussRAISingleSigma
 
gc() - Static method in class net.imagej.patcher.MemoryProfiler
 
generalEquation() - Method in interface net.imagej.axis.CalibratedAxis
Gets the general equation representing values along this axis; for instance: y = m*x + b.
generalEquation() - Method in class net.imagej.axis.ChapmanRichardsAxis
 
generalEquation() - Method in class net.imagej.axis.DefaultLinearAxis
 
generalEquation() - Method in class net.imagej.axis.EnumeratedAxis
 
generalEquation() - Method in class net.imagej.axis.ExponentialAxis
 
generalEquation() - Method in class net.imagej.axis.ExponentialRecoveryAxis
 
generalEquation() - Method in class net.imagej.axis.GammaVariateAxis
 
generalEquation() - Method in class net.imagej.axis.GaussianAxis
 
generalEquation() - Method in class net.imagej.axis.IdentityAxis
 
generalEquation() - Method in class net.imagej.axis.InverseRodbardAxis
 
generalEquation() - Method in class net.imagej.axis.LogLinearAxis
 
generalEquation() - Method in class net.imagej.axis.PolynomialAxis
 
generalEquation() - Method in class net.imagej.axis.PowerAxis
 
generalEquation() - Method in class net.imagej.axis.RodbardAxis
 
GeneralPathFigure - Class in net.imagej.ui.swing.overlay
A composite figure, made up of possibly-overlapping BezierFigures.
GeneralPathFigure(BezierFigure...) - Constructor for class net.imagej.ui.swing.overlay.GeneralPathFigure
 
GeneralPathJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for composite area selections.
GeneralPathJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
GeneralPathOverlay - Class in net.imagej.overlay
An overlay for the GeneralPathRegionOfInterest.
GeneralPathOverlay(Context) - Constructor for class net.imagej.overlay.GeneralPathOverlay
 
generateAll(File) - Method in class net.imagej.omero.ScriptGenerator
Generates OMERO script stubs for all available ImageJ modules.
GenericTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable
 
geom() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "geom" namespace.
geometricMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
geometricMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
GeometricOp<I,O> - Interface in net.imagej.ops.geom
Simple marker interface for Geoemtric ops.
GeomNamespace - Class in net.imagej.ops.geom
Namespace for Geom.
GeomNamespace() - Constructor for class net.imagej.ops.geom.GeomNamespace
 
GeomUtils - Class in net.imagej.ops.geom
Utility class for Ops in the GeomNamespace.
get(String) - Static method in class net.imagej.axis.Axes
Accessor for an AxisType of the given label.
get(String, boolean) - Static method in class net.imagej.axis.Axes
Accessor for an AxisType of the given label.
get(String) - Method in class net.imagej.axis.VariableAxis
Gets the value of the variable with the given name, or null if none.
get(String) - Static method in enum net.imagej.display.ColorMode
 
get(URLClassLoader, File...) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
get(URLClassLoader, URL...) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
get(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
get(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
get(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
get(String, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
get(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
get(int) - Method in class net.imagej.legacy.convert.TableListWrapper
 
get(String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
get(String, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
get(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
get(Class<?>, String, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
get(int) - Method in class net.imagej.omero.LazyTableList
 
get(int) - Method in class net.imagej.omero.legacy.LazyOverlay
 
get() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
get() - Static method in class net.imagej.patcher.MemoryProfiler
 
get() - Static method in class net.imagej.tensorflow.ui.AvailableTensorFlowVersions
 
get() - Method in class net.imagej.types.PreciseFixedFloatType
 
get() - Method in class net.imagej.types.UnboundedIntegerType
 
get(int) - Method in class net.imagej.updater.FilesCollection
Deprecated.
get(Object) - Method in class net.imagej.updater.FilesCollection
 
get(URL) - Method in class net.imagej.updater.util.DropboxURLMapper
 
get() - Static method in class net.imagej.updater.util.UpdaterUserInterface
 
get2DPoint(RandomAccess<DoubleType>) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
Helper method to take a point in a n-d image and reduce it down to a 2 dimensional point (e.g.
get2DRealPoint(RandomAccess<DoubleType>) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
Helper method to take a point in a n-d image and reduce it down to a 2 dimensional Realpoint (e.g.
get2DRealPoint(double, double) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
Returns a RealPoint with the coordinates (x, y).
getAccelerator() - Method in class net.imagej.ops.filter.AbstractIterativeFFTFilterC
 
getAction() - Method in class net.imagej.updater.FileObject
 
getActions() - Method in enum net.imagej.updater.FileObject.Status
Deprecated.
getActions(FileObject) - Method in class net.imagej.updater.FilesCollection
Deprecated.
getActions(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection
Deprecated.
getActionStyle(ActionListener) - Static method in class net.imagej.ui.swing.updater.DiffView
Generate an attribute set for links.
getActiveAxis() - Method in class net.imagej.display.DefaultImageDisplay
 
getActiveAxis() - Method in interface net.imagej.display.ImageDisplay
Gets the axis currently designated as active.
getActiveDataset() - Method in class net.imagej.display.DefaultImageDisplayService
 
getActiveDataset(ImageDisplay) - Method in class net.imagej.display.DefaultImageDisplayService
 
getActiveDataset() - Method in interface net.imagej.display.ImageDisplayService
Gets the active Dataset, if any, of the currently active ImageDisplay.
getActiveDataset(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService
Gets the active Dataset, if any, of the given ImageDisplay.
getActiveDataset() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getActiveDataset(ImageDisplay) - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getActiveDatasetView() - Method in class net.imagej.display.DefaultImageDisplayService
 
getActiveDatasetView(ImageDisplay) - Method in class net.imagej.display.DefaultImageDisplayService
 
getActiveDatasetView() - Method in interface net.imagej.display.ImageDisplayService
Gets the active DatasetView, if any, of the currently active ImageDisplay.
getActiveDatasetView(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService
Gets the active DatasetView, if any, of the given ImageDisplay.
getActiveDatasetView() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getActiveDatasetView(ImageDisplay) - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getActiveImageDisplay() - Method in class net.imagej.display.DefaultImageDisplayService
 
getActiveImageDisplay() - Method in interface net.imagej.display.ImageDisplayService
Gets the currently active ImageDisplay.
getActiveImageDisplay() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getActiveModule() - Static method in class net.imagej.legacy.Macros
 
getActiveOverlay(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
 
getActiveOverlay(ImageDisplay) - Method in interface net.imagej.display.OverlayService
Returns the active overlay associated with a display
getActivePosition() - Method in class net.imagej.display.DefaultImageDisplayService
 
getActivePosition(ImageDisplay) - Method in class net.imagej.display.DefaultImageDisplayService
 
getActivePosition() - Method in interface net.imagej.display.ImageDisplayService
Gets the active Position, if any, of the currently active ImageDisplay.
getActivePosition(ImageDisplay) - Method in interface net.imagej.display.ImageDisplayService
Gets the active Position, if any, of the active DatasetView in the given ImageDisplay.
getActivePosition() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getActivePosition(ImageDisplay) - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getActiveView() - Method in class net.imagej.display.DefaultImageDisplay
 
getActiveView() - Method in interface net.imagej.display.ImageDisplay
Gets the view currently designated as active.
getAdapter() - Method in class net.imagej.ui.swing.overlay.IJBezierTool
 
getAdapter() - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
getAdapter() - Method in class net.imagej.ui.swing.overlay.IJDelegationSelectionTool
 
getAdapter(Tool) - Method in class net.imagej.ui.swing.overlay.JHotDrawService
Gets the adapter associated with the given tool.
getAdapter(Overlay) - Method in class net.imagej.ui.swing.overlay.JHotDrawService
Gets the first available adapter for the given overlay.
getAdapter(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.JHotDrawService
Gets the first available adapter for the given overlay.
getAdapter() - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
Gets the JHotDrawAdapter associated with this JHotDraw tool.
getAdapters(Overlay) - Method in class net.imagej.ui.swing.overlay.JHotDrawService
Gets all adapters capable of handling a given overlay.
getAdapters(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.JHotDrawService
Gets all adapters capable of handling a given overlay/figure combination.
getAdditionalMacroFunctions() - Static method in class net.imagej.legacy.IJ1Helper
Gets the result of Interpreter.getAdditionalFunctions().
getAdds() - Method in class net.imagej.ui.swing.updater.DiffView
Get the number of added lines.
getAliases() - Method in class net.imagej.ops.OpInfo
Gets the fully qualified aliases.
getAllAdapters() - Method in class net.imagej.ui.swing.overlay.JHotDrawService
Gets all of the discovered adapters.
getAllAttributes() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getAllFields() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getAllFiles() - Method in class net.imagej.ui.swing.updater.FileTable
 
getAllInterfaces() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getAllMethods() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getAlpha() - Method in class net.imagej.options.OptionsOverlay
 
getAlpha() - Method in class net.imagej.overlay.AbstractOverlay
 
getAlpha() - Method in interface net.imagej.overlay.Overlay
 
getAlpha() - Method in class net.imagej.overlay.OverlaySettings
 
getAlpha() - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean
 
getAlpha() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
getAlpha() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
 
getAngle(double, double) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
Returns the angle between the x-axis and a given vector (in components).
getAngle() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
Gets the angle of counterclockwise rotation to apply.
getAnimation(ImageDisplay) - Method in interface net.imagej.animation.AnimationService
Gets the given ImageDisplay's corresponding Animation.
getAnimation(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
 
getAnimationService() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
getAntialiasing() - Method in class net.imagej.render.DummyTextRenderer
 
getAntialiasing() - Method in interface net.imagej.render.TextRenderer
 
getAntialiasing() - Method in class net.imagej.ui.awt.AWTTextRenderer
 
getApp() - Method in class net.imagej.legacy.LegacyService
 
getApplicationFrame() - Method in class net.imagej.legacy.ui.LegacyUI
 
getAppName() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Returns the name to use in place of "ImageJ".
getAppName() - Method in class net.imagej.legacy.DefaultLegacyHooks
Returns the application name for use with ImageJ 1.x.
getAppName() - Method in interface net.imagej.legacy.plugin.LegacyAppConfiguration
Returns the application name for use with ImageJ 1.x.
getAppName() - Method in class net.imagej.patcher.LegacyHooks
Returns the name to use in place of "ImageJ".
getAppVersion() - Method in class net.imagej.legacy.DefaultLegacyHooks
Returns the application version to display in the ImageJ 1.x status bar.
getAppVersion() - Method in class net.imagej.patcher.LegacyHooks
Returns the version to use in place of the legacy version.
getArea() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
Get the area of this facet.
getArg() - Method in class net.imagej.legacy.command.LegacyCommandInfo
Gets the arg portion of the legacy command, if any.
getArgs() - Method in class net.imagej.ops.OpCandidate
 
getArgs() - Method in class net.imagej.ops.OpRef
Gets the op's arguments.
getArity() - Method in interface net.imagej.ops.special.BinaryOp
 
getArity() - Method in interface net.imagej.ops.special.NullaryOp
 
getArity() - Method in interface net.imagej.ops.special.SpecialOp
Gets the op's number of special input parameters.
getArity() - Method in interface net.imagej.ops.special.UnaryOp
 
getArray(Dataset) - Method in class net.imagej.matlab.DefaultImageJMATLABService
 
getArray(Dataset) - Method in interface net.imagej.matlab.ImageJMATLABService
Converts a Dataset to a MatlabNumericArray which can then be safely passed to MATLAB.
getArrowColor() - Method in class net.imagej.options.OptionsArrowTool
 
getArrowSize() - Method in class net.imagej.options.OptionsArrowTool
 
getArrowStyle() - Method in class net.imagej.options.OptionsArrowTool
 
getArrowWidth() - Method in class net.imagej.options.OptionsArrowTool
 
getArtifactId() - Method in class net.imagej.app.ImageJApp
 
getArtifactId() - Method in class net.imagej.app.ToplevelImageJApp
 
getArtifactId() - Method in class net.imagej.legacy.LegacyImageJApp
 
getAttribute(NodeList, String) - Static method in class net.imagej.util.MediaWikiClient
 
getAttributes() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
 
getAttributes(int) - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getAuthors() - Method in class net.imagej.updater.FileObject
 
getAutoscaleMethod(String) - Method in interface net.imagej.autoscale.AutoscaleService
Returns the AutoscaleMethod associated with the given name.
getAutoscaleMethod(String) - Method in class net.imagej.autoscale.DefaultAutoscaleService
 
getAutoscaleMethodNames() - Method in interface net.imagej.autoscale.AutoscaleService
Returns the names of all available AutoscaleMethods, ordered by priority.
getAutoscaleMethodNames() - Method in class net.imagej.autoscale.DefaultAutoscaleService
 
getAutoscaleMethods() - Method in interface net.imagej.autoscale.AutoscaleService
Returns a map of available AutoscaleMethods, indexed by name.
getAutoscaleMethods() - Method in class net.imagej.autoscale.DefaultAutoscaleService
 
getAvailableSites() - Static method in class net.imagej.updater.util.AvailableSites
 
getAvailableSites(Logger) - Static method in class net.imagej.updater.util.AvailableSites
 
getAxesIndices(TypedSpace<?>, AxisType[]) - Static method in class net.imagej.ops.slice.SliceUtils
 
getAxis() - Method in class net.imagej.animation.Animation
Gets the axis over which to animate.
getAxis() - Method in class net.imagej.display.event.AxisEvent
 
getAxis() - Method in class net.imagej.display.event.DelayedPositionEvent
 
getAxis() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
getAxis() - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis
 
getAxis() - Method in class net.imagej.plugins.commands.restructure.AddAxis
 
getAxis() - Method in class net.imagej.plugins.commands.restructure.AddData
 
getAxis() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
 
getAxis() - Method in class net.imagej.plugins.commands.restructure.FlipAxis
 
getAxis() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
Gets the type of the axis to be changed.
getAxisName() - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
getAxisSize() - Method in class net.imagej.plugins.commands.restructure.AddAxis
 
getAxisType(int) - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
getAxisTypes(TypedSpace<A>) - Static method in class net.imagej.space.SpaceUtils
Gets an array of AxisType's delineating the types of the axes of a TypedSpace.
getBaseDirectory() - Static method in class net.imagej.util.AppUtils
Deprecated.
getBaseName() - Method in class net.imagej.updater.FileObject
 
getBestZoomLevel(double) - Method in class net.imagej.display.DefaultImageCanvas
 
getBestZoomLevel(double) - Method in interface net.imagej.display.Zoomable
Gets the closest step-wise zoom factor below the given scale.
getBgValues() - Method in class net.imagej.options.OptionsChannels
 
getBigInteger() - Method in class net.imagej.types.UnboundedIntegerType
 
getBitsPerPixel() - Method in class net.imagej.types.PreciseFixedFloatType
 
getBitsPerPixel() - Method in class net.imagej.types.UnboundedIntegerType
 
getBoolean(String, boolean) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getBoolean(Class<?>, String, boolean) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getBorderSize() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
 
getBounds() - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
getBounds() - Method in class net.imagej.ui.swing.overlay.PointFigure
 
getBounds() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
getBrightness() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
getBuffer(A) - Method in interface net.imagej.ops.join.BufferFactory
 
getBuffer(A) - Method in class net.imagej.ops.join.DefaultJoin2Computers
 
getBuffer(A) - Method in class net.imagej.ops.join.DefaultJoinNComputers
 
getButtons() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getButtons() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getByName(String) - Method in interface net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation
 
getByName(String) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D
 
getByName(String) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D
 
getBytesOfInfo() - Method in interface net.imagej.Dataset
 
getBytesOfInfo() - Method in class net.imagej.DefaultDataset
 
getCachedChecksums() - Method in class net.imagej.updater.Checksummer
 
getCancelReason() - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness
 
getCancelReason() - Method in class net.imagej.ops.thread.chunker.AbstractChunker
 
getCancelReason() - Method in class net.imagej.ops.thread.chunker.ChunkerInterleaved
 
getCancelReason() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
getCancelReason() - Method in class net.imagej.plugins.commands.debug.PointSetDemo
 
getCanvas() - Method in class net.imagej.display.DefaultImageDisplay
 
getCanvas() - Method in class net.imagej.display.event.CanvasEvent
 
getCanvas() - Method in interface net.imagej.display.ImageDisplay
 
getCanvas() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
getCanvas() - Method in interface net.imagej.ui.swing.viewer.image.SwingImageDisplayViewer
Gets the JHotDraw canvas used by the viewer.
getCategories() - Method in class net.imagej.updater.FileObject
 
getCellEditor(int, int) - Method in class net.imagej.ui.swing.updater.FileTable
 
getCenter(double[]) - Method in class net.imagej.overlay.AngleOverlay
 
getCenter(int) - Method in class net.imagej.overlay.AngleOverlay
 
getCenterPoint() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
 
getCenterU() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
getCenterV() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
getCentroid() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
Get the centroid of this facet.
getChanges() - Method in class net.imagej.ui.swing.updater.DiffView
Get the number of added or removed lines.
getChannelCount() - Method in class net.imagej.ChannelCollection
Returns the number of channels in the collection
getChannelCount() - Method in interface net.imagej.display.DatasetView
Gets the number of channels in the displayed data.
getChannelCount() - Method in class net.imagej.display.DefaultDatasetView
 
getChannelMax(int) - Method in interface net.imagej.display.DatasetView
Gets the maximum value in the display range, for the given channel.
getChannelMax(int) - Method in class net.imagej.display.DefaultDatasetView
 
getChannelMaximum(int) - Method in class net.imagej.DefaultDataset
 
getChannelMaximum(int) - Method in interface net.imagej.ImageMetadata
Gets the maximum actual pixel value for the given channel.
getChannelMaximum(int) - Method in class net.imagej.ImgPlus
 
getChannelMin(int) - Method in interface net.imagej.display.DatasetView
Gets the minimum value in the display range, for the given channel.
getChannelMin(int) - Method in class net.imagej.display.DefaultDatasetView
 
getChannelMinimum(int) - Method in class net.imagej.DefaultDataset
 
getChannelMinimum(int) - Method in interface net.imagej.ImageMetadata
Gets the minimum actual pixel value for the given channel.
getChannelMinimum(int) - Method in class net.imagej.ImgPlus
 
getChannelPosition() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
 
getChannels() - Method in interface net.imagej.Dataset
Gets the length of the Axes.CHANNEL axis, or 1 if no such axis.
getChannels() - Method in class net.imagej.DrawingTool
 
getChannelValue(long) - Method in class net.imagej.ChannelCollection
Gets the value of a channel in the collection
getCheckboxes() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getCheckboxes() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getChecksum() - Method in class net.imagej.updater.FileObject
 
getChoice(Component, List<String>, String, String) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
getChoices() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getChoices() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getChoices() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getClass(Object) - Static method in class net.imagej.ops.OpMatchingUtil
Gets the "useful" class information carries on the given object, which depends on the actual type of the object.
getClassLoader() - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Gets the class loader containing the ImageJ 1.x classes used in this legacy environment.
getClassLoader() - Method in class net.imagej.legacy.IJ1Helper
 
getClassLoader() - Method in class net.imagej.patcher.LegacyEnvironment
Gets the class loader containing the ImageJ 1.x classes used in this legacy environment.
getClassNameConstant(int) - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getClassPath(ClassLoader) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getClasspathElements(ClassLoader, StringBuilder, ClassLoader...) - Static method in class net.imagej.patcher.LegacyHooks
Do not use: for internal use only.
getClassVersion(File) - Static method in class net.imagej.updater.Diff
Get the version of a class file.
getClassVersion(InputStream) - Static method in class net.imagej.updater.Diff
Get the version of a class file.
getClient() - Method in class net.imagej.omero.DefaultOMEROSession
 
getClient() - Method in interface net.imagej.omero.OMEROSession
Gets the omero.client associated with this OMEROSession
getCoefficient(int) - Method in class net.imagej.ops.features.zernike.helper.Polynom
return the coefficient at a given position.
getColocValue() - Method in class net.imagej.ops.coloc.pValue.PValueResult
 
getColocValuesArray() - Method in class net.imagej.ops.coloc.pValue.PValueResult
 
getColor(ChannelCollection) - Method in interface net.imagej.display.DatasetView
 
getColor(ChannelCollection) - Method in class net.imagej.display.DefaultDatasetView
Reason from a channel collection and internal state what the closest color is.
getColor() - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
getColor() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
 
getColor() - Method in class net.imagej.plugins.tools.PixelRecorder
Returns the color of the pixel associated with the processed mouse event.
getColorMode() - Method in interface net.imagej.display.DatasetView
 
getColorMode() - Method in class net.imagej.display.DefaultDatasetView
 
getColorMode() - Method in class net.imagej.plugins.commands.display.ChannelsTool
 
getColorTable(int) - Method in class net.imagej.DefaultDataset
 
getColorTable(int) - Method in interface net.imagej.ImageMetadata
Gets the color table at the given position.
getColorTable(int) - Method in class net.imagej.ImgPlus
 
getColorTableCount() - Method in class net.imagej.DefaultDataset
 
getColorTableCount() - Method in interface net.imagej.ImageMetadata
Gets the number of available ColorTables.
getColorTableCount() - Method in class net.imagej.ImgPlus
 
getColorTables() - Method in interface net.imagej.display.DatasetView
 
getColorTables() - Method in class net.imagej.display.DefaultDatasetView
 
getColumnClass(int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
getColumnClass(int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
getColumnCount() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
getColumnCount() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getColumnCount() - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
getColumnCount() - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
getColumnHeader(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
getColumnIndex(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
getColumnName(int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
getColumnName(int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
getCommands() - Method in class net.imagej.legacy.IJ1Helper
 
getCompatibleCUDA() - Method in class net.imagej.tensorflow.TensorFlowVersion
 
getCompatibleCuDNN() - Method in class net.imagej.tensorflow.TensorFlowVersion
 
getCompletions(CompletionProvider) - Method in interface net.imagej.legacy.plugin.MacroExtensionAutoCompletionPlugin
 
getCompletions(CompletionProvider) - Method in class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService
 
getComponent() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
 
getComponent() - Method in class net.imagej.legacy.ui.LegacyStatusBar
 
getComponent() - Method in class net.imagej.legacy.ui.LegacyToolBar
 
getComponentType() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
 
getComponentType() - Method in class net.imagej.legacy.ui.LegacyStatusBar
 
getComponentType() - Method in class net.imagej.legacy.ui.LegacyToolBar
 
getCompositeChannelCount() - Method in class net.imagej.DefaultDataset
 
getCompositeChannelCount() - Method in interface net.imagej.ImageMetadata
Gets the number of channels intended to be displayed together.
getCompositeChannelCount() - Method in class net.imagej.ImgPlus
 
getCompositeDimIndex() - Method in interface net.imagej.display.DatasetView
 
getCompositeDimIndex() - Method in class net.imagej.display.DefaultDatasetView
 
getComputeEstimateOp() - Method in class net.imagej.ops.deconvolve.PadAndRichardsonLucy
set up and return the compute estimate op.
getComputeEstimateOp() - Method in class net.imagej.ops.deconvolve.PadAndRichardsonLucyTV
 
getComputer(int) - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
Implements the row-wise addition required for computations of integral images.
getComputer(int) - Method in class net.imagej.ops.image.integral.DefaultIntegralImg
 
getComputer(int) - Method in class net.imagej.ops.image.integral.SquareIntegralImg
 
getConflict() - Method in class net.imagej.updater.Conflicts.Conflict
 
getConflicts(boolean) - Method in class net.imagej.updater.Conflicts
 
getConflicts() - Method in class net.imagej.updater.FilesCollection
 
getConnectedType() - Method in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
 
getConnectivity() - Method in class net.imagej.plugins.tools.FloodFillTool
Gets this flood fill's current connectivity (4 or 8 connected).
getConsolePane() - Method in class net.imagej.legacy.ui.LegacyUI
 
getConstrainXY() - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Gets whether command will constrain XY aspect ratio.
getContext() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Return the current context, if any.
getContext() - Method in class net.imagej.AbstractData
 
getContext() - Method in class net.imagej.legacy.DefaultLegacyHooks
 
getContext() - Method in class net.imagej.patcher.LegacyHooks
Returns the current context, if any.
getContrast() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
getConverter() - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.IJLineToLineOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.OvalRoiToEllipsoidOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PointRoiToRealPointCollectionOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolygonRoiToPolygon2DOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolylineRoiToPolylineOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolylineRoiToRealMaskRealIntervalOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.RoiToBoxOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.RoiToMaskIntervalOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.ShapeRoiToMaskRealIntervalOMEROConverter
 
getConverter() - Method in class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.TextRoiToTextRoiWrapperOMEROConverter
 
getCooccurrenceMatrix(IterableInterval<T>) - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature
Creates CooccurrenceMatrix2D from IterableInterval on demand, given the specified parameters.
getCornerDiameter() - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
getCornerRepresentation() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
getCrashFile(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
 
getCreatedAt() - Method in class net.imagej.server.services.DefaultObjectInfo
 
getCreatedAt() - Method in interface net.imagej.server.services.ObjectInfo
 
getCreatedBy() - Method in class net.imagej.server.services.DefaultObjectInfo
 
getCreatedBy() - Method in interface net.imagej.server.services.ObjectInfo
 
getCreateOp() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
getCreationTool(ImageDisplay) - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
 
getCredentials() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getCredentials(String) - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser
 
getCredentials(String, String) - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser
 
getCredentials(NetrcParser.Credentials) - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser
Obtains the credentials from $HOME/.netrc for the given hostname (and optionally username).
getCurrentLastModified() - Method in class net.imagej.updater.FilesUploader
 
getCursor() - Method in class net.imagej.display.DefaultImageCanvas
 
getCursor() - Method in interface net.imagej.display.ImageCanvas
Gets the current mouse cursor.
getCursor() - Method in class net.imagej.plugins.tools.PanTool
 
getCursor() - Method in class net.imagej.ui.swing.tools.SwingPointTool
 
getCursor() - Method in class net.imagej.ui.swing.tools.SwingTextTool
 
getCX() - Method in class net.imagej.plugins.tools.PixelRecorder
Returns the X value of the mouse event in image coordinate space.
getCY() - Method in class net.imagej.plugins.tools.PixelRecorder
Returns the Y value of the mouse event in image coordinate space.
getData() - Method in class net.imagej.display.AbstractDataView
 
getData() - Method in interface net.imagej.display.DatasetView
 
getData() - Method in interface net.imagej.display.DataView
Gets the Data represented by this view.
getData() - Method in class net.imagej.display.DefaultDatasetView
 
getData() - Method in class net.imagej.display.DefaultOverlayView
 
getData() - Method in interface net.imagej.display.OverlayView
 
getDataMax() - Method in class net.imagej.widget.HistogramBundle
Gets the maximum value of the actual data range.
getDataMin() - Method in class net.imagej.widget.HistogramBundle
Gets the minimum value of the actual data range.
getDataset() - Method in class net.imagej.DrawingTool
Return the Dataset associated with this DrawingTool.
getDataset(MatlabNumericArray) - Method in class net.imagej.matlab.DefaultImageJMATLABService
 
getDataset() - Method in class net.imagej.matlab.ImageJMATLABCommands
Converts the active Dataset to a MATLAB matrix, stored in a variable using Named.getName().
getDataset(MatlabNumericArray) - Method in interface net.imagej.matlab.ImageJMATLABService
Converts a MatlabNumericArray retrieved from MATLAB to an Dataset.
getDataset() - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
getDataset() - Method in class net.imagej.plugins.commands.imglib.Binner
Gets the Dataset that the bin operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Gets the Dataset that the resize operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Gets the Dataset that the reslice operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
Gets the Dataset that the rotate operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Gets the Dataset that the translate operation will be run upon.
getDataset() - Method in class net.imagej.plugins.commands.io.NewImage
 
getDataset() - Method in class net.imagej.plugins.commands.restructure.AddAxis
 
getDataset() - Method in class net.imagej.plugins.commands.restructure.AddData
 
getDataset() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
 
getDataset() - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
getDataset() - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
getDataset() - Method in class net.imagej.plugins.commands.restructure.FlipAxis
 
getDataset() - Method in class net.imagej.plugins.commands.restructure.ReorderData
 
getDataset() - Method in class net.imagej.plugins.tools.PixelRecorder
Returns the Dataset associated with the processed mouse event.
getDataset(DataView) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
getDatasetAs(String) - Method in class net.imagej.matlab.ImageJMATLABCommands
As ImageJMATLABCommands.getDataset(), using the specified variable name.
getDatasetID() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getDatasets() - Method in interface net.imagej.DatasetService
Gets a list of all Datasets.
getDatasets(ImageDisplay) - Method in interface net.imagej.DatasetService
Gets a list of Datasets linked to the given ImageDisplay.
getDatasets() - Method in class net.imagej.DefaultDatasetService
 
getDatasets(ImageDisplay) - Method in class net.imagej.DefaultDatasetService
 
getDatasetView() - Method in class net.imagej.plugins.commands.display.AutoContrast
 
getDataType() - Method in class net.imagej.lut.io.LUTIOPlugin
 
getDataType() - Method in interface net.imagej.mesh.io.MeshIOPlugin
 
getDataType() - Method in interface net.imagej.mesh.io.PointsIOPlugin
 
getDataType() - Method in class net.imagej.plugins.commands.io.NewImage
 
getDataType() - Method in class net.imagej.server.external.DefaultTableIOPlugin
 
getDataView() - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView
 
getDataView() - Method in interface net.imagej.ui.swing.viewer.image.FigureView
Gets the linked ImageJ data view.
getDataView() - Method in class net.imagej.ui.swing.viewer.image.OverlayFigureView
 
getDataViews() - Method in class net.imagej.display.DefaultImageDisplayService
 
getDataViews() - Method in interface net.imagej.display.ImageDisplayService
Gets the list of available DataViews.
getDataViews() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getDefaultAutoscaleMethod() - Method in interface net.imagej.autoscale.AutoscaleService
Returns the default autoscaling method.
getDefaultAutoscaleMethod() - Method in class net.imagej.autoscale.DefaultAutoscaleService
 
getDefaultColorTable(int) - Static method in class net.imagej.display.ColorTables
Gets the color table corresponding to a default channel ordering of RGBCMY.
getDefaultImports() - Method in class net.imagej.legacy.plugin.LegacyAutoImporter
 
getDefaultIntervalRange(IterableInterval<? extends RealType<?>>) - Method in interface net.imagej.autoscale.AutoscaleService
Calculates the range of interest from the data contained in the given IterableInterval using the default autoscale method.
getDefaultIntervalRange(IterableInterval<? extends RealType<?>>) - Method in class net.imagej.autoscale.DefaultAutoscaleService
 
getDefaultRandomAccessRange(RandomAccessibleInterval<? extends RealType<?>>) - Method in interface net.imagej.autoscale.AutoscaleService
Calculates the range of interest from the data contained in the given RandomAccessibleInterval using the default autoscale method.
getDefaultRandomAccessRange(RandomAccessibleInterval<? extends RealType<?>>) - Method in class net.imagej.autoscale.DefaultAutoscaleService
 
getDefaultSettings() - Method in class net.imagej.display.DefaultOverlayService
 
getDefaultSettings() - Method in interface net.imagej.display.OverlayService
 
getDefaultUsername() - Method in class net.imagej.updater.FilesUploader
 
getDefaultValue() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getDelta(int) - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Gets the translation delta for a given axis.
getDependencies() - Method in class net.imagej.updater.FileObject
 
getDependencies(boolean) - Method in class net.imagej.updater.FilesCollection
Gets a map listing all the dependencees of files to be installed or updated.
getDependencies(Iterable<FileObject>, boolean) - Method in class net.imagej.updater.FilesCollection
Gets a map listing all the dependencees of the specified files.
getDependencies(File, String) - Method in class net.imagej.updater.util.DependencyAnalyzer
 
getDependencies(File, FileObject) - Method in class net.imagej.updater.util.DependencyAnalyzer
 
getDepth() - Method in interface net.imagej.Dataset
Gets the length of the Axes.Z axis, or 1 if no such axis.
getDescription() - Method in interface net.imagej.plugins.commands.assign.noisereduce.Neighborhood
 
getDescription() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeigh
 
getDescription() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeigh
 
getDescription() - Method in class net.imagej.plugins.tools.AbstractColorTool
 
getDescription() - Method in class net.imagej.updater.Conflicts.Resolution
 
getDescription() - Method in class net.imagej.updater.FileObject
 
getDescription() - Method in class net.imagej.updater.UpdateSite
 
getDesktop() - Method in class net.imagej.legacy.ui.LegacyUI
 
getDestination() - Method in interface net.imagej.updater.util.Downloadable
 
getDeveloperActions() - Method in enum net.imagej.updater.FileObject.Status
 
getDigest(String, File, long) - Method in class net.imagej.updater.Checksummer
 
getDigest(String, File) - Static method in class net.imagej.updater.util.UpdaterUtil
 
getDigest() - Static method in class net.imagej.updater.util.UpdaterUtil
 
getDimension(int) - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Gets the given dimension of the resized image.
getDimension(AxisType) - Method in class net.imagej.plugins.commands.io.NewImage
 
getDimensionality() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
 
getDimensionality() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
getDimensions(Dataset, AxisType, long) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Gets the dimensions of the output data
getDirectory(String, File) - Method in class net.imagej.legacy.IJ1Helper
Chooses a directory using ImageJ 1.x' directory chooser.
getDisplay() - Method in class net.imagej.animation.Animation
Gets the display being animated.
getDisplay() - Method in class net.imagej.app.AboutImageJ
 
getDisplay() - Method in class net.imagej.display.DefaultImageCanvas
 
getDisplay() - Method in class net.imagej.display.event.ImageDisplayEvent
 
getDisplay() - Method in interface net.imagej.display.ImageCanvas
Gets the canvas's display.
getDisplay() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
getDisplay() - Method in class net.imagej.plugins.commands.animation.StartAnimation
 
getDisplay() - Method in class net.imagej.plugins.commands.animation.StopAnimation
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.AbsDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.EquationDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.ExpDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.InvertDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.LogDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.MathCommand
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.SquareDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.axispos.AxisPositionBackward
 
getDisplay() - Method in class net.imagej.plugins.commands.axispos.AxisPositionForward
 
getDisplay() - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis
 
getDisplay() - Method in class net.imagej.plugins.commands.correlate.AbstractShadows
 
getDisplay() - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo
 
getDisplay() - Method in class net.imagej.plugins.commands.correlate.SharpenDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.correlate.SmoothDataValues
 
getDisplay() - Method in class net.imagej.plugins.commands.display.DeselectOverlays
 
getDisplay() - Method in class net.imagej.plugins.commands.display.Flatten
 
getDisplay() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
getDisplay() - Method in class net.imagej.plugins.commands.display.RemoveOverlayReferences
 
getDisplay() - Method in class net.imagej.plugins.commands.display.SelectOverlays
 
getDisplay() - Method in class net.imagej.plugins.commands.display.SelectView
 
getDisplay() - Method in class net.imagej.plugins.commands.display.ShowLUT
 
getDisplay() - Method in class net.imagej.plugins.commands.imglib.CropImage
 
getDisplay() - Method in class net.imagej.plugins.commands.imglib.NanBackground
 
getDisplay() - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
 
getDisplay() - Method in class net.imagej.plugins.commands.neigh.FindEdges
 
getDisplay() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
getDisplay() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
Gets the ImageDisplay to be changed.
getDisplay() - Method in class net.imagej.plugins.commands.rotate.FlipHorizontally
 
getDisplay() - Method in class net.imagej.plugins.commands.rotate.FlipVertically
 
getDisplay() - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesLeft
 
getDisplay() - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesRight
 
getDisplay() - Method in class net.imagej.plugins.commands.zoom.Zoom100Percent
 
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomIn
 
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomOriginalScale
 
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomOut
 
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
getDisplay() - Method in class net.imagej.plugins.commands.zoom.ZoomToSelection
 
getDisplay() - Method in class net.imagej.sampler.SamplingDefinition
Returns the input ImageDisplay of the SamplingDefinition.
getDisplay() - Method in class net.imagej.ui.swing.overlay.FigureCreatedEvent
Gets the associated ImageDisplay.
getDisplay() - Method in class net.imagej.ui.swing.overlay.IJBezierTool
 
getDisplay() - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
getDisplay() - Method in class net.imagej.ui.swing.overlay.IJDelegationSelectionTool
 
getDisplay() - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
Gets the ImageDisplay associated with this JHotDraw tool.
getDisplay() - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
getDisplay() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
getDisplay() - Method in interface net.imagej.ui.viewer.image.ImageDisplayPanel
 
getDisplay() - Method in interface net.imagej.ui.viewer.image.ImageDisplayViewer
 
getDisplays(Overlay) - Method in class net.imagej.display.DefaultOverlayService
 
getDisplays(Overlay) - Method in interface net.imagej.display.OverlayService
Returns all the displays associated with an overlay
getDisplayService() - Method in class net.imagej.display.DefaultImageDisplayService
 
getDisplayService() - Method in interface net.imagej.display.ImageDisplayService
 
getDisplayService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getDistanceToFaceInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
getDivByZeroVal() - Method in class net.imagej.options.OptionsMisc
 
getDocument() - Method in class net.imagej.ui.swing.updater.DiffView
Access the underlying document.
getDotSize() - Method in class net.imagej.plugins.tools.SprayCanTool
 
getDouble(String, double) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getDouble(Class<?>, String, double) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getDoublePosition(int) - Method in class net.imagej.display.AbstractDataView
 
getDoublePosition(int) - Method in class net.imagej.display.DefaultImageDisplay
 
getDoublePosition(int) - Method in interface net.imagej.mesh.Vertex
 
getDoublePosition(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
getDoublePosition(int) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
getDoublePosition(int) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
getDoublePosition(int) - Method in class net.imagej.Position
Gets the current Position's i'th coordinate as a double
getDrawing() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
getDrawingArea() - Method in class net.imagej.ui.swing.overlay.PointFigure
 
getDrawingArea() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
getDrawingEditor() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
getDrawingView() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
getEndArrowStyle() - Method in class net.imagej.options.OptionsOverlay
 
getEndArrowStyle() - Method in class net.imagej.overlay.OverlaySettings
 
getEndingWavelength() - Method in class net.imagej.plugins.commands.display.SpectralComposite
 
getEndLineArrowStyle() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
getEndPoint() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
getEndPoint1() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
 
getEndPoint2() - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
 
getEntry(int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
getEpsilon() - Method in class net.imagej.ops.geom.geom3d.DefaultConvexHull3D
Gets the epsilon value of the last executed calculation.
getEquation() - Method in class net.imagej.plugins.commands.assign.EquationDataValues
 
getError() - Method in class net.imagej.plugins.commands.imglib.Binner
Returns the current error message if any.
getError() - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Returns the current error message if any.
getError() - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Returns the current error message if any.
getError() - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Returns the current error message if any.
getError() - Method in class net.imagej.sampler.AxisSubrange
 
getError() - Method in class net.imagej.sampler.SamplingDefinition
Returns the current value of the error string of the SamplingDefinition.
getErrorMessage() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getErrorMessage() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
getErrorMessage() - Method in interface net.imagej.minmax.MinMaxMethod
 
getErrorMessage() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getErrorMessage() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm
 
getErrorMessage() - Method in class net.imagej.plugins.commands.rotate.XYFlipper
Returns the current error message.
getEventService() - Method in interface net.imagej.animation.AnimationService
 
getEventService() - Method in class net.imagej.animation.DefaultAnimationService
 
getEventService() - Method in class net.imagej.display.DefaultImageDisplayService
 
getEventService() - Method in class net.imagej.display.DefaultWindowService
 
getEventService() - Method in interface net.imagej.display.ImageDisplayService
 
getEventService() - Method in interface net.imagej.display.WindowService
 
getEventService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getExperimenter() - Method in class net.imagej.omero.DefaultOMEROSession
 
getExperimenter() - Method in interface net.imagej.omero.OMEROSession
Gets the Experimenter associated with this OMEROSession
getExtensions() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage
 
getExtent() - Method in class net.imagej.autoscale.DataRange
Returns the extent of the data range (max - min).
getExtent(int) - Method in class net.imagej.overlay.RectangleOverlay
 
getExtents() - Method in class net.imagej.Position
Returns the parent space Extents associated with this Position.
getFacesInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
getFactor(int) - Method in class net.imagej.plugins.commands.imglib.Binner
Gets the reduction factor for a given dimension.
getFFTDimensionsRealToComplex(boolean, Dimensions) - Static method in class net.imagej.ops.filter.fft.FFTMethodsUtility
Calculates complex FFT size for real to complex FFT
getFFTInput() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
 
getFFTKernel() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
 
getFgValues() - Method in class net.imagej.options.OptionsChannels
 
getFigure() - Method in class net.imagej.ui.swing.overlay.FigureCreatedEvent
Gets the newly created Figure.
getFigure() - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView
 
getFigure() - Method in interface net.imagej.ui.swing.viewer.image.FigureView
Gets the linked JHotDraw figure.
getFigure() - Method in class net.imagej.ui.swing.viewer.image.OverlayFigureView
 
getFile(int) - Method in class net.imagej.ui.swing.updater.FileTable
 
getFileDependencies(FilesCollection, boolean) - Method in class net.imagej.updater.FileObject
 
getFileFromDigest(String, String) - Method in class net.imagej.updater.FilesCollection
 
getFilename() - Method in class net.imagej.updater.Conflicts.Conflict
 
getFilename() - Method in class net.imagej.updater.FileObject
 
getFilename(boolean) - Method in class net.imagej.updater.FileObject
 
getFilename(String, boolean) - Static method in class net.imagej.updater.FileObject
 
getFilename(long) - Method in class net.imagej.updater.FileObject
Returns the file name for the given date, as per the update site.
getFilename() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
 
getFilename() - Method in interface net.imagej.updater.Uploadable
 
getFilename() - Method in class net.imagej.updater.UploadableFile
 
getFilesCollection() - Method in class net.imagej.updater.FilesUploader
 
getFilesize() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
 
getFilesize() - Method in interface net.imagej.updater.Uploadable
 
getFilesize() - Method in class net.imagej.updater.UploadableFile
 
getFilesize() - Method in interface net.imagej.updater.util.Downloadable
 
getFillColor() - Method in class net.imagej.options.OptionsOverlay
 
getFillColor() - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
getFillColor() - Method in class net.imagej.overlay.AbstractOverlay
 
getFillColor() - Method in interface net.imagej.overlay.Overlay
 
getFillColor() - Method in class net.imagej.overlay.OverlaySettings
 
getFillColor() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
getFillOpacity() - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
getFillType() - Method in class net.imagej.plugins.commands.io.NewImage
 
getFirst() - Method in class net.imagej.animation.Animation
 
getFirst() - Method in class net.imagej.ops.join.DefaultJoin2Computers
 
getFirst() - Method in class net.imagej.ops.join.DefaultJoin2Inplaces
 
getFirst() - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace
 
getFirst() - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer
 
getFirst() - Method in interface net.imagej.ops.join.Join2Ops
 
getFirst() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
getFirstDisplay(Overlay) - Method in class net.imagej.display.DefaultOverlayService
 
getFirstDisplay(Overlay) - Method in interface net.imagej.display.OverlayService
Returns the first display associated with an overlay
getFloat(String, float) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getFloat(Class<?>, String, float) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getFloatPosition(int) - Method in class net.imagej.display.AbstractDataView
 
getFloatPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
 
getFloatPosition(int) - Method in interface net.imagej.mesh.Vertex
 
getFloatPosition(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
getFloatPosition(int) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
getFloatPosition(int) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
getFloatPosition(int) - Method in class net.imagej.Position
Gets the current Position's i'th coordinate as a float
getFont() - Method in class net.imagej.options.OptionsFont
 
getFontFamily() - Method in class net.imagej.DrawingTool
Gets the family name of the drawing font.
getFontFamily() - Method in class net.imagej.render.DummyTextRenderer
 
getFontFamily() - Method in interface net.imagej.render.TextRenderer
 
getFontFamily() - Method in class net.imagej.ui.awt.AWTTextRenderer
 
getFontSize() - Method in class net.imagej.DrawingTool
Gets the size of the drawing font.
getFontSize() - Method in class net.imagej.options.OptionsFont
 
getFontSize() - Method in class net.imagej.render.DummyTextRenderer
 
getFontSize() - Method in interface net.imagej.render.TextRenderer
 
getFontSize() - Method in class net.imagej.ui.awt.AWTTextRenderer
 
getFontStyle() - Method in class net.imagej.DrawingTool
Gets the style of the drawing font.
getFontStyle() - Method in class net.imagej.options.OptionsFont
 
getFontStyle() - Method in class net.imagej.render.DummyTextRenderer
 
getFontStyle() - Method in interface net.imagej.render.TextRenderer
 
getFontStyle() - Method in class net.imagej.ui.awt.AWTTextRenderer
 
getFormatName() - Method in class net.imagej.omero.OMEROFormat
 
getFPS() - Method in class net.imagej.animation.Animation
 
getFPS() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
getFrames() - Method in interface net.imagej.Dataset
Gets the length of the Axes.TIME axis, or 1 if no such axis.
getFreeColumn(String) - Method in class net.imagej.legacy.convert.TableWrapper
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionGeometricMean
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionHarmonicMean
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMax
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMean
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMedian
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMidpoint
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMin
 
getFunction(Function<long[], DoubleType>) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionTrimmedMean
 
getGateway() - Method in class net.imagej.omero.DefaultOMEROSession
 
getGateway() - Method in interface net.imagej.omero.OMEROSession
Gets the Gateway associated with this OMEROSession
getGeneralPath() - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
getGenericType() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getGradients() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
returns the gradient image
getGradientsRandomAccess() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
returns the gradient image's RandomAccess
getGroupId() - Method in class net.imagej.app.ImageJApp
 
getGroupId() - Method in class net.imagej.legacy.LegacyImageJApp
 
getHalfTrimWidth() - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionTrimmedMean
 
getHeader() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
getHeight() - Method in interface net.imagej.Dataset
Gets the length of the Axes.Y axis, or 1 if no such axis.
getHeight() - Method in class net.imagej.options.OptionsProfilePlot
 
getHeight() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
getHistogram(int) - Method in class net.imagej.widget.HistogramBundle
Gets the histogram of interest for this HistogramBundle.
getHistogramCount() - Method in class net.imagej.widget.HistogramBundle
Returns the total number of histograms contained in this bundle.
getHost() - Method in class net.imagej.updater.UpdateSite
 
getHostname() - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser.Credentials
 
getIconURL() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Returns the icon to use in place of the ImageJ microscope.
getIconURL() - Method in class net.imagej.legacy.DefaultLegacyHooks
Returns the icon for use with ImageJ 1.x.
getIconURL() - Method in interface net.imagej.legacy.plugin.LegacyAppConfiguration
Returns the icon for use with ImageJ 1.x.
getIconURL() - Method in class net.imagej.patcher.LegacyHooks
Returns the icon to use in place of the ImageJ microscope.
getId() - Method in class net.imagej.server.services.DefaultObjectInfo
 
getId() - Method in interface net.imagej.server.services.ObjectInfo
 
getIdentifier() - Method in class net.imagej.legacy.command.LegacyCommandInfo
 
getIdentifier() - Method in class net.imagej.server.mixins.Mixins.ModuleInfoMixIn
 
getIDList() - Method in class net.imagej.legacy.IJ1Helper
 
getIds() - Method in class net.imagej.server.resources.ObjectsResource
Lists all object IDs on the imagej-server.
getIds() - Method in class net.imagej.server.services.DefaultObjectService
 
getIds() - Method in interface net.imagej.server.services.ObjectService
Gets a set of all IDs.
getIJ() - Method in class net.imagej.legacy.IJ1Helper
 
getIJ1Helper() - Method in class net.imagej.legacy.LegacyService
Gets the helper class responsible for direct interfacing with ImageJ1.
getImag() - Method in class net.imagej.types.BigComplex
Gets imaginary component of this complex number as a BigDecimal.
getImag() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getImage(int) - Method in class net.imagej.legacy.IJ1Helper
 
getImage() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getImageDisplay() - Method in class net.imagej.plugins.commands.display.CaptureImage
 
getImageDisplay() - Method in class net.imagej.plugins.commands.display.interactive.OrthogonalViews
 
getImageDisplay() - Method in class net.imagej.plugins.commands.display.interactive.SynchronizeWindows
 
getImageDisplay() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
getImageDisplay() - Method in class net.imagej.plugins.commands.display.RemoveOverlay
 
getImageDisplay() - Method in class net.imagej.plugins.commands.misc.Benchmark
 
getImageDisplay() - Method in class net.imagej.plugins.commands.overlay.AddImage
 
getImageDisplay() - Method in class net.imagej.plugins.commands.overlay.FromOverlayManager
 
getImageDisplays() - Method in class net.imagej.display.DefaultImageDisplayService
 
getImageDisplays() - Method in interface net.imagej.display.ImageDisplayService
Gets a list of all available ImageDisplays.
getImageDisplays() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getImageDisplays() - Method in class net.imagej.legacy.LegacyImageMap
Gets a list of ImageDisplay instances known to this legacy service.
getImageDisplayService() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
getImageID(Object) - Method in class net.imagej.legacy.IJ1Helper
Gets the ID of the given ImagePlus object.
getImageID() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getImageJ1Version(CodeHacker) - Static method in class net.imagej.patcher.LegacyInjector
Determines the ImageJ 1.x version without loading the ImageJ 1.x classes.
getImageJDir() - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getImageMap() - Method in class net.imagej.legacy.LegacyService
Gets the LegacyImageMap associated with this LegacyService.
getImagePlusInstances() - Method in class net.imagej.legacy.LegacyImageMap
Gets a list of ImagePlus instances known to this legacy service.
getImaginaryDouble() - Method in class net.imagej.types.BigComplex
Gets imaginary component as a double (narrowing possible).
getImaginaryDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getImaginaryDouble() - Method in class net.imagej.types.PreciseFixedFloatType
 
getImaginaryDouble() - Method in class net.imagej.types.UnboundedIntegerType
 
getImaginaryFloat() - Method in class net.imagej.types.BigComplex
Gets imaginary component as a float (narrowing possible).
getImaginaryFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getImaginaryFloat() - Method in class net.imagej.types.PreciseFixedFloatType
 
getImaginaryFloat() - Method in class net.imagej.types.UnboundedIntegerType
 
getImg() - Method in class net.imagej.ImgPlus
Gets the backing Img of this ImgPlus.
getImgPlus() - Method in interface net.imagej.Dataset
TODO
getImgPlus() - Method in class net.imagej.DefaultDataset
 
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoin2Computers
 
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoin2Inplaces
 
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace
 
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer
 
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoinNComputers
 
getIndependentInstance() - Method in class net.imagej.ops.join.DefaultJoinNInplaces
 
getIndependentInstance() - Method in class net.imagej.ops.loop.DefaultLoopComputer
 
getIndependentInstance() - Method in class net.imagej.ops.loop.DefaultLoopInplace
 
getIndependentInstance() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
 
getIndependentInstance() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
getIndependentInstance() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
getIndependentInstance() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
getIndependentInstance() - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
getIndependentInstance() - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
getIndependentInstance() - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
getIndependentInstance() - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
getIndependentInstance() - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
 
getIndependentInstance() - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
 
getIndependentInstance() - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
getIndependentInstance() - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
getIndependentInstance() - Method in class net.imagej.ops.math.NullaryNumericTypeMath.Zero
 
getIndependentInstance() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
getIndependentInstance() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
getIndependentInstance() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
getIndependentInstance() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
getIndependentInstance() - Method in interface net.imagej.ops.special.BinaryOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.computer.NullaryComputerOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.function.BinaryFunctionOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.function.NullaryFunctionOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.function.UnaryFunctionOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI1
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI1
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCFI
 
getIndependentInstance() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI
 
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1OnlyOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op
 
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.BinaryInplaceOnlyOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.BinaryInplaceOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOnlyOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.NullaryOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.SpecialOp
 
getIndependentInstance() - Method in interface net.imagej.ops.special.UnaryOp
 
getIndependentInstance() - Method in interface net.imagej.ops.Threadable
Gets a reference to an instance of this object which can be used simultaneously from a second thread while this instance is being used from "its" thread.
getIndex(String) - Method in class net.imagej.omero.legacy.LazyOverlay
 
getIndex() - Method in class net.imagej.Position
Gets the long index from the current Position.
getIndices() - Method in class net.imagej.sampler.AxisSubrange
 
getInfo() - Method in class net.imagej.plugins.commands.misc.ShowInfo
 
getInfo() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus
 
getInImageJDirectory(URLClassLoader, String...) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getInitialScale() - Method in class net.imagej.display.DefaultImageCanvas
 
getInitialScale() - Method in interface net.imagej.display.Zoomable
Gets the scale to use when reverting after zooming.
getInput() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
getInput() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
 
getInput1() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Returns the Dataset that is input 1 for this image calculation.
getInput2() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Returns the Dataset that is input 2 for this image calculation.
getInputAxes() - Method in class net.imagej.sampler.SamplingDefinition
Returns the AxisTypes that are present in the input data.
getInputCalibratedAxes() - Method in class net.imagej.sampler.SamplingDefinition
Returns the set of CalibratedAxis's that are present in the input data.
getInputDisplay() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
Returns the the input image to be sampled.
getInputRanges() - Method in class net.imagej.sampler.SamplingDefinition
Returns a multidimensional set of input axis values generated from the input data of this SamplingDefinition.
getInputStream() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
 
getInputStream() - Method in interface net.imagej.updater.Uploadable
 
getInputStream() - Method in class net.imagej.updater.UploadableFile
 
getInputStream(InputStream, int) - Method in class net.imagej.updater.XMLFileDownloader
 
getInputType() - Method in class net.imagej.convert.ConvertIntArrayToFinalInterval
 
getInputType() - Method in class net.imagej.convert.ConvertListToFinalInterval
 
getInputType() - Method in class net.imagej.convert.ConvertLongArrayToFinalInterval
 
getInputType() - Method in class net.imagej.convert.ConvertRAIToIterableInterval
 
getInputType() - Method in class net.imagej.convert.DatasetToImgConverter
 
getInputType() - Method in class net.imagej.convert.DatasetToImgPlusConverter
 
getInputType() - Method in class net.imagej.convert.ImgLabelingToImgConverter
 
getInputType() - Method in class net.imagej.convert.ImgToImgLabelingConverter
 
getInputType() - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
getInputType() - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter
 
getInputType() - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
getInputType() - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
getInputType() - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
getInputType() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter
 
getInputType() - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter
 
getInputType() - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter
 
getInputType() - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper
 
getInputType() - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateUnwrapConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.AbstractRoiUnwrapConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter
 
getInputType() - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter
 
getInputType() - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter
 
getInputType() - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
 
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ByteTableToResultsTable
 
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.FloatTableToResultsTable
 
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.GenericTableToResultsTable
 
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.IntTableToResultsTable
 
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.LongTableToResultsTable
 
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ResultsTableToResultsTable
 
getInputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.ShortTableToResultsTable
 
getInputType() - Method in class net.imagej.legacy.convert.TableUnwrapper
 
getInputType() - Method in class net.imagej.matlab.DatasetMATLABConverter
 
getInputType() - Method in class net.imagej.matlab.MATLABDatasetConverter
 
getInputType() - Method in class net.imagej.notebook.mime.MIMEConverter
 
getInputType() - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJROIToOverlay
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJROIToROITree
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IJLineWrapperToLineData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.RoiWrapperToRectangleData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.TextRoiWrapperToTextData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.MaskPredicateToOverlay
 
getInputType() - Method in class net.imagej.omero.legacy.convert.MaskPredicateToROITree
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi
 
getInputType() - Method in class net.imagej.omero.legacy.convert.OverlayToROITree
 
getInputType() - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
 
getInputType() - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
 
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask
 
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse
 
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine
 
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint
 
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon
 
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline
 
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle
 
getInputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText
 
getInputType() - Method in class net.imagej.omero.legacy.text.OMEROTextUnwrapper
 
getInputType() - Method in class net.imagej.omero.legacy.text.OMEROToImageJText
 
getInputType() - Method in class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper
 
getInputType() - Method in class net.imagej.omero.roi.ellipse.ImageJToOMEROEllipse
 
getInputType() - Method in class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper
 
getInputType() - Method in class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
 
getInputType() - Method in class net.imagej.omero.roi.line.ImageJToOMEROLine
 
getInputType() - Method in class net.imagej.omero.roi.line.OMEROLineUnwrapper
 
getInputType() - Method in class net.imagej.omero.roi.line.OMEROToImageJLine
 
getInputType() - Method in class net.imagej.omero.roi.mask.MaskIntervalToMaskData
 
getInputType() - Method in class net.imagej.omero.roi.mask.OMEROMaskUnwrapper
 
getInputType() - Method in class net.imagej.omero.roi.mask.OMEROToImageJMask
 
getInputType() - Method in class net.imagej.omero.roi.mask.RAIToMaskData
 
getInputType() - Method in class net.imagej.omero.roi.mask.RealMaskRealIntervalToMaskData
 
getInputType() - Method in class net.imagej.omero.roi.OMEROROICollectionToROIData
 
getInputType() - Method in class net.imagej.omero.roi.OMEROROIElementToROIData
 
getInputType() - Method in class net.imagej.omero.roi.point.ImageJToOMEROPoint
 
getInputType() - Method in class net.imagej.omero.roi.point.OMEROPointUnwrapper
 
getInputType() - Method in class net.imagej.omero.roi.point.OMEROToImageJPoint
 
getInputType() - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
 
getInputType() - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolygon
 
getInputType() - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolyline
 
getInputType() - Method in class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper
 
getInputType() - Method in class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper
 
getInputType() - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
 
getInputType() - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
 
getInputType() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskToShapeData
 
getInputType() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMaskToShapeData
 
getInputType() - Method in class net.imagej.omero.roi.rectangle.ImageJToOMERORectangle
 
getInputType() - Method in class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper
 
getInputType() - Method in class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
 
getInputType() - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
 
getInputType() - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
 
getInputType() - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
 
getInputType() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealIntervalToShapeData
 
getInputType() - Method in class net.imagej.omero.roi.TreeNodeMaskPredicateToROIData
 
getInputType() - Method in class net.imagej.omero.roi.TreeNodeRAIToROIData
 
getInputType() - Method in class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter
 
getInputType() - Method in class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter
 
getInputType() - Method in class net.imagej.roi.MaskIntervalToRAIConverter
 
getInputType() - Method in class net.imagej.roi.MaskToRAConverter
 
getInputType() - Method in class net.imagej.roi.RAIToMaskIntervalConverter
 
getInputType() - Method in class net.imagej.roi.RAToMaskConverter
 
getInputType() - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
 
getInputType() - Method in class net.imagej.roi.RealMaskToRRAConverter
 
getInputType() - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
 
getInputType() - Method in class net.imagej.roi.RRAToRealMaskConverter
 
getInputType() - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
 
getInputType() - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
 
getInputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
 
getInputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
 
getInputType() - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
 
getInputType() - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
 
getInputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
 
getInputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
 
getInputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
 
getInputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.FloatToFloatTypeConverter
 
getInputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.IntegerToIntTypeConverter
 
getInputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.LongToLongTypeConverter
 
getInsets() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getInsets() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getInstalledVersions(File, Progress) - Static method in class net.imagej.updater.FilesCollection
Utility method for the Bug Submitter
getInstance() - Static method in class net.imagej.legacy.LegacyService
Returns the legacy service associated with the ImageJ 1.x instance in the current class loader.
getInstance() - Static method in class net.imagej.updater.CommandLine
Deprecated.
getInstances() - Method in interface net.imagej.types.DataTypeService
Returns a list of all DataTypes known to system.
getInstances() - Method in class net.imagej.types.DefaultDataTypeService
 
getInt(String, int) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getInt(Class<?>, String, int) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getInteger() - Method in class net.imagej.types.UnboundedIntegerType
 
getIntegerLong() - Method in class net.imagej.server.mixins.Mixins.IntegerTypeMixIn
 
getIntegerLong() - Method in class net.imagej.types.UnboundedIntegerType
 
getInterfaces() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getInterpolationMethod() - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Gets the interpolation method used to combine pixels.
getInterpolationMethod() - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Gets the interpolation method used to combine pixels.
getInterpolationMethod() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
Gets the interpolation method used to combine pixels.
getInterpolationMethod() - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Gets the interpolation method used to combine pixels.
getInterpreter() - Static method in class net.imagej.legacy.IJ1Helper
Returns the active macro Interpreter.
getIntPosition(AxisType) - Method in class net.imagej.display.AbstractDataView
 
getIntPosition(int) - Method in class net.imagej.display.AbstractDataView
 
getIntPosition(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
 
getIntPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
 
getIntPosition(int) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
getIntPosition(int) - Method in class net.imagej.Position
Gets the current Position's i'th coordinate as an int
getIntPosition(AxisType) - Method in interface net.imagej.PositionableByAxis
Returns the current position in a given dimension.
getIterable() - Method in interface net.imagej.ui.swing.updater.ViewOptions.CustomOption
 
getIterationsPerCycle() - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
 
getIterationsPerCycle() - Method in class net.imagej.ops.morphology.thin.GuoHallThinningStrategy
 
getIterationsPerCycle() - Method in class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy
 
getIterationsPerCycle() - Method in interface net.imagej.ops.morphology.thin.ThinningStrategy
Returns the minimum number of iterations necessary for the algorithm to run.
getJarDigest(File) - Static method in class net.imagej.updater.util.UpdaterUtil
 
getJarDigest(File, boolean, boolean) - Static method in class net.imagej.updater.util.UpdaterUtil
 
getJarDigest(File, boolean, boolean, boolean) - Static method in class net.imagej.updater.util.UpdaterUtil
 
getJarPath(ClassLoader, String) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getJobInfo() - Method in class net.imagej.omero.ModuleAdapter
Converts ImageJ module metadata to OMERO job metadata.
getJobParam(ModuleItem<?>) - Method in class net.imagej.omero.DefaultOMEROService
 
getJobParam(ModuleItem<?>) - Method in interface net.imagej.omero.OMEROService
Converts an ImageJ module parameter to an OMERO job parameter.
getJpegQuality() - Method in class net.imagej.options.OptionsInputOutput
 
getJustification() - Method in class net.imagej.overlay.TextOverlay
 
getJvmArgs() - Method in class net.imagej.config.ConfigFileParameters
Gets the value associated with the "jvmargs" key in the launcher configuration file.
getLabel() - Method in interface net.imagej.axis.AxisType
 
getLabel() - Method in class net.imagej.axis.DefaultAxisType
 
getLabel() - Method in enum net.imagej.display.ColorMode
 
getLabel() - Method in class net.imagej.ops.OpRef
Gets a label identifying the op's scope (i.e., its name and/or types).
getLabel() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.InstallOrUpdate
 
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.KeepAsIs
 
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.Remove
 
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.Uninstall
 
getLabel(FilesCollection, Iterable<FileObject>) - Method in class net.imagej.updater.action.Upload
 
getLabel(FilesCollection, Iterable<FileObject>) - Method in interface net.imagej.updater.GroupAction
 
getLabels() - Static method in enum net.imagej.display.ColorMode
 
getLanguageName() - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin
 
getLast() - Method in class net.imagej.animation.Animation
 
getLast() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
getLastBgColor() - Method in class net.imagej.options.OptionsChannels
 
getLastFgColor() - Method in class net.imagej.options.OptionsChannels
 
getLastModified(String) - Static method in class net.imagej.updater.UpToDate
 
getLastModified() - Method in class net.imagej.updater.util.Downloader
 
getLastModified(String) - Static method in class net.imagej.updater.util.UpdaterUtil
Deprecated.
getLastModified(URL) - Method in class net.imagej.updater.util.UpdaterUtil
 
getLastUsed() - Method in class net.imagej.server.services.DefaultObjectInfo
 
getLastUsed() - Method in interface net.imagej.server.services.ObjectInfo
Gets the timestamp when the object is last used in module execution
getLegacyClassName() - Method in class net.imagej.legacy.command.LegacyCommandInfo
Gets the name of the class backing this legacy command.
getLegacyContext() - Static method in class net.imagej.legacy.IJ1Helper
Gets the SciJava application context linked to the ImageJ 1.x instance.
getLegacyRoiId() - Method in class net.imagej.omero.legacy.LegacyOMEROROIService
Return a unique ID for identify Rois.
getLegacyService() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter
 
getLibDir(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
 
getLineColor() - Method in class net.imagej.options.OptionsOverlay
 
getLineColor() - Method in class net.imagej.overlay.AbstractOverlay
 
getLineColor() - Method in interface net.imagej.overlay.Overlay
 
getLineColor() - Method in class net.imagej.overlay.OverlaySettings
 
getLineColor() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
getLineEnd(double[]) - Method in class net.imagej.overlay.LineOverlay
 
getLineEnd(int) - Method in class net.imagej.overlay.LineOverlay
 
getLineEndArrowStyle() - Method in class net.imagej.overlay.AbstractOverlay
 
getLineEndArrowStyle() - Method in interface net.imagej.overlay.Overlay
 
getLineIntercept() - Method in class net.imagej.widget.HistogramBundle
Gets the line equation intercept.
getLineSlope() - Method in class net.imagej.widget.HistogramBundle
Gets the line equation slope.
getLineStart(double[]) - Method in class net.imagej.overlay.LineOverlay
 
getLineStart(int) - Method in class net.imagej.overlay.LineOverlay
 
getLineStartArrowStyle() - Method in class net.imagej.overlay.AbstractOverlay
 
getLineStartArrowStyle() - Method in interface net.imagej.overlay.Overlay
 
getLineStyle() - Method in class net.imagej.options.OptionsOverlay
 
getLineStyle() - Method in class net.imagej.overlay.AbstractOverlay
 
getLineStyle() - Method in interface net.imagej.overlay.Overlay
Get the style of the outline line
getLineStyle() - Method in class net.imagej.overlay.OverlaySettings
 
getLineStyle() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
getLineWidth() - Method in class net.imagej.DrawingTool
Gets the current drawing line width.
getLineWidth() - Method in class net.imagej.options.OptionsLineWidth
 
getLineWidth() - Method in class net.imagej.options.OptionsOverlay
 
getLineWidth() - Method in class net.imagej.overlay.AbstractOverlay
 
getLineWidth() - Method in interface net.imagej.overlay.Overlay
 
getLineWidth() - Method in class net.imagej.overlay.OverlaySettings
 
getLineWidth() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
getLineWidth() - Method in class net.imagej.plugins.tools.AbstractLineTool
Gets the drawing width for lines (in pixels).
getLinks() - Method in class net.imagej.updater.FileObject
 
getList(String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getList(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getList(Class<?>) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getLocalFilename(boolean) - Method in class net.imagej.updater.FileObject
 
getLocation() - Method in class net.imagej.legacy.command.LegacyCommandInfo
 
getLocationX() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
 
getLocationY() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
 
getLog() - Method in class net.imagej.updater.FilesUploader
 
getLogService() - Static method in class net.imagej.updater.util.UpdaterUtil
Get a log service.
getLong(String, long) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getLong(Class<?>, String, long) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getLongPosition(AxisType) - Method in class net.imagej.display.AbstractDataView
 
getLongPosition(int) - Method in class net.imagej.display.AbstractDataView
 
getLongPosition(AxisType) - Method in class net.imagej.display.DefaultDatasetView
 
getLongPosition(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
 
getLongPosition(int) - Method in class net.imagej.display.DefaultImageDisplay
 
getLongPosition(int) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
getLongPosition(int) - Method in class net.imagej.Position
Gets the current Position's i'th coordinate as a long
getLongPosition(AxisType) - Method in interface net.imagej.PositionableByAxis
Returns the current position in a given dimension.
getLongUpdateSiteName(String) - Method in class net.imagej.updater.CommandLine
 
getLoopCount() - Method in class net.imagej.ops.loop.DefaultLoopComputer
 
getLoopCount() - Method in class net.imagej.ops.loop.DefaultLoopInplace
 
getLoopCount() - Method in interface net.imagej.ops.loop.LoopOp
 
getLowerTailProportion() - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
Returns the fractional proportion of the distribution to count as in lower tail.
getM() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
getMacroParameter(String, boolean) - Method in class net.imagej.legacy.IJ1Helper
Gets a macro parameter of type boolean.
getMacroParameter(String, double) - Method in class net.imagej.legacy.IJ1Helper
Gets a macro parameter of type double.
getMacroParameter(String, String) - Method in class net.imagej.legacy.IJ1Helper
Gets a macro parameter of type String.
getMacroParameter(String) - Method in class net.imagej.legacy.IJ1Helper
Gets a macro parameter of type String.
getMagnitude() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
getMaintainer() - Method in class net.imagej.updater.UpdateSite
 
getMap(String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getMap(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getMap(Class<?>) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
getMarkWidth() - Method in class net.imagej.options.OptionsPointTool
 
getMax() - Method in class net.imagej.autoscale.DataRange
Returns the largest end point of the data range.
getMax() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
getMax() - Method in interface net.imagej.minmax.MinMaxMethod
 
getMaxBin() - Method in class net.imagej.widget.HistogramBundle
Gets the bin number of the maximum value.
getMaxCoords(RandomAccessibleInterval<DoubleType>, boolean) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
 
getMaximum() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
getMaximumDistanceVertex() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
The vertex which is in front and farthest apart of the plane
getMaximumValue() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getMaximumVesselness() - Method in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
getMaxIterations() - Method in class net.imagej.ops.filter.AbstractIterativeFFTFilterC
 
getMaxMemory() - Method in class net.imagej.options.OptionsMemoryAndThreads
Returns the number of megabytes of memory that should be allocated for use by ImageJ.
getMaxThreads() - Method in class net.imagej.ops.CustomOpEnvironment
 
getMaxThreads() - Method in class net.imagej.ops.DefaultOpService
 
getMaxThreads() - Method in interface net.imagej.ops.OpEnvironment
Gets the maximum number of threads any single op is allowed to use.
getMaxValue() - Method in class net.imagej.types.PreciseFixedFloatType
 
getMaxValue() - Method in class net.imagej.types.UnboundedIntegerType
 
getMaxY() - Method in class net.imagej.options.OptionsProfilePlot
 
getMemoryInMB() - Method in class net.imagej.config.ConfigFileParameters
Returns the value of the number of megabytes of ram to allocate that is specified in the launcher config file.
getMenuBar() - Method in class net.imagej.legacy.IJ1Helper
 
getMenuFontSize() - Method in class net.imagej.options.OptionsAppearance
 
getMenuService() - Method in class net.imagej.display.DefaultWindowService
 
getMenuService() - Method in interface net.imagej.display.WindowService
 
getMenuStructure() - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Gets the ImageJ 1.x menu structure as a map
getMenuStructure() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Returns ImageJ 1.x' menu structure as a map.
getMenuStructure() - Method in class net.imagej.patcher.LegacyEnvironment
Gets the ImageJ 1.x menu structure as a map
getMenuStructure() - Method in class net.imagej.patcher.LegacyHooks
Returns ImageJ 1.x' menu structure as a map.
getMessage() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getMessage() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getMimetype(String) - Static method in class net.imagej.server.Utils
 
getMin() - Method in class net.imagej.autoscale.DataRange
Returns the smallest end point of the data range.
getMin() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
getMin() - Method in interface net.imagej.minmax.MinMaxMethod
 
getMinBin() - Method in class net.imagej.widget.HistogramBundle
Gets the bin number of the minimum value.
getMinimum() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
getMinimumSize() - Method in class net.imagej.ui.swing.SwingColorBar
 
getMinimumValue() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getMinimumVesselness() - Method in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
getMinIncrement() - Method in class net.imagej.types.PreciseFixedFloatType
 
getMinIncrement() - Method in class net.imagej.types.UnboundedIntegerType
 
getMinValue() - Method in class net.imagej.types.PreciseFixedFloatType
 
getMinValue() - Method in class net.imagej.types.UnboundedIntegerType
 
getMinY() - Method in class net.imagej.options.OptionsProfilePlot
 
getMode() - Method in class net.imagej.options.OptionsWandTool
 
getModule() - Method in class net.imagej.ops.OpCandidate
Gets the module instance associated with the attempted match.
getModuleService() - Method in class net.imagej.display.DefaultWindowService
 
getModuleService() - Method in interface net.imagej.display.WindowService
 
getN() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
getName() - Method in class net.imagej.AbstractData
 
getName() - Method in class net.imagej.DefaultDataset
 
getName() - Method in class net.imagej.ImgPlus
 
getName() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getName() - Method in class net.imagej.ops.coloc.ColocNamespace
 
getName() - Method in class net.imagej.ops.convert.ConvertNamespace
 
getName() - Method in class net.imagej.ops.copy.CopyNamespace
 
getName() - Method in class net.imagej.ops.create.CreateNamespace
 
getName() - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
getName() - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
getName() - Method in class net.imagej.ops.features.hog.HogNamespace
 
getName() - Method in class net.imagej.ops.features.lbp2d.LBPNamespace
 
getName() - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
getName() - Method in class net.imagej.ops.features.zernike.ZernikeNamespace
 
getName() - Method in class net.imagej.ops.filter.FilterNamespace
 
getName() - Method in class net.imagej.ops.geom.GeomNamespace
 
getName() - Method in class net.imagej.ops.image.ImageNamespace
 
getName() - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
getName() - Method in class net.imagej.ops.labeling.LabelingNamespace
 
getName() - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
getName() - Method in class net.imagej.ops.logic.LogicNamespace
 
getName() - Method in class net.imagej.ops.math.MathNamespace
 
getName() - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
getName() - Method in class net.imagej.ops.OpInfo
Gets the fully qualified name, with namespace.
getName() - Method in class net.imagej.ops.OpRef
Gets the name of the op.
getName() - Method in class net.imagej.ops.segment.SegmentNamespace
 
getName() - Method in class net.imagej.ops.stats.StatsNamespace
 
getName() - Method in class net.imagej.ops.thread.ThreadNamespace
 
getName() - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
getName() - Method in class net.imagej.ops.topology.TopologyNamespace
 
getName() - Method in class net.imagej.ops.transform.TransformNamespace
 
getName() - Method in class net.imagej.plugins.commands.io.NewImage
 
getName() - Method in class net.imagej.server.ImageJServer
 
getName() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getName() - Method in class net.imagej.updater.UpdateSite
 
getNames() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage
 
getNamespace() - Method in class net.imagej.ops.OpInfo
Gets the namespace.
getNamespace(String) - Static method in class net.imagej.ops.OpUtils
Gets the namespace portion of the given op name.
getNanos() - Static method in class net.imagej.patcher.PerformanceProfiler
Gets nanoseconds per thread for relative time measurements
getNanosQnD() - Static method in class net.imagej.patcher.PerformanceProfiler
A much faster, but less accurate version of PerformanceProfiler.getNanos() The problem with this is that it does not measure the current Thread's CPU cycles.
getNativeVersionFile(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
 
getNegativeX() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
getNegativeY() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
getNeighborhood() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
 
getNeighborhood() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
getNeighborhoodType() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
getNeighbourhood(RandomAccess<BitType>) - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
Returns all booleans in a 3x3 neighbourhood of the pixel the RandomAccess points to.
getNewAxisIndex(int) - Method in class net.imagej.plugins.commands.restructure.ReorderData
Gets newAxes[index] which is the position within existing Dataset's axes.
getNewURL() - Method in class net.imagej.updater.URLChange
 
getNextBoolean() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getNextBoolean() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getNextChoice() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getNextChoice() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getNextChoiceIndex() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getNextChoiceIndex() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getNextImage() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getNextNumber() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getNextNumber() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getNextRadioButton() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
Returns the selected item in the next radio button group.
getNextRadioButton() - Method in class net.imagej.patcher.HeadlessGenericDialog
Returns the selected item in the next radio button group.
getNextString() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
Returns the contents of the next text field.
getNextString() - Method in class net.imagej.patcher.HeadlessGenericDialog
Returns the contents of the next text field.
getNextText() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getNextText() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getNoAction() - Method in enum net.imagej.updater.FileObject.Status
 
getNormal() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
Get the normal of this facet.
getNumericFields() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getNumericFields() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getNumThreads() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
getNumThreads() - Method in interface net.imagej.minmax.MinMaxMethod
 
getNValues() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
returns the nValue image
getNValuesRandomAccess() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
returns the nValue image's RandomAccess
getObf() - Method in class net.imagej.ops.filter.pad.PadInputFFT
 
getOBFInput() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
 
getOBFKernel() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
 
getObject() - Method in class net.imagej.event.DataCreatedEvent
 
getObject() - Method in class net.imagej.event.DataDeletedEvent
 
getObject() - Method in class net.imagej.event.DataModifiedEvent
 
getObject() - Method in class net.imagej.event.DatasetCreatedEvent
 
getObject() - Method in class net.imagej.event.DatasetDeletedEvent
 
getObject() - Method in class net.imagej.event.DatasetRestructuredEvent
 
getObject() - Method in class net.imagej.event.DatasetUpdatedEvent
 
getObject() - Method in class net.imagej.event.OverlayCreatedEvent
 
getObject() - Method in class net.imagej.event.OverlayDeletedEvent
 
getObject() - Method in class net.imagej.event.OverlayRestructuredEvent
 
getObject() - Method in class net.imagej.event.OverlayUpdatedEvent
 
getObject(String, String, UriInfo) - Method in class net.imagej.server.resources.ObjectsResource
Retrieves an object in a specific format.
getObject() - Method in class net.imagej.server.services.DefaultObjectInfo
 
getObject() - Method in interface net.imagej.server.services.ObjectInfo
 
getObjectClass() - Method in interface net.imagej.server.services.ObjectInfo
 
getObjectInfo(String) - Method in class net.imagej.server.resources.ObjectsResource
Shows the information of an object.
getObjectService() - Method in interface net.imagej.DatasetService
 
getObjectService() - Method in class net.imagej.DefaultDatasetService
 
getObjectService() - Method in class net.imagej.display.DefaultOverlayService
 
getObjectService() - Method in interface net.imagej.display.OverlayService
 
getObsoleteDigests(String, File) - Static method in class net.imagej.updater.util.UpdaterUtil
Handle previous methods to calculate the checksums gracefully Earlier, we simply checksummed all the contents in .jar files.
getOctant(double, double) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
This method determines the octant (neighboring pixel) a vector points towards in pixel space.
getOctantCoords(int) - Static method in class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
Creates the modifier array for the octants.
getOMERORef() - Method in class net.imagej.omero.OMERORefColumn
 
getOp() - Method in class net.imagej.ops.loop.DefaultLoopComputer
 
getOp() - Method in class net.imagej.ops.loop.DefaultLoopInplace
 
getOp() - Method in interface net.imagej.ops.loop.LoopOp
 
getOp() - Method in class net.imagej.ops.map.AbstractMapBinaryComputer
 
getOp() - Method in class net.imagej.ops.map.AbstractMapBinaryInplace
 
getOp() - Method in class net.imagej.ops.map.AbstractMapBinaryInplace1
 
getOp() - Method in class net.imagej.ops.map.AbstractMapComputer
 
getOp() - Method in class net.imagej.ops.map.AbstractMapInplace
 
getOp() - Method in class net.imagej.ops.map.AbstractMapNullaryComputer
 
getOp() - Method in class net.imagej.ops.map.AbstractMapView
 
getOp() - Method in interface net.imagej.ops.map.MapOp
 
getOp() - Method in class net.imagej.ops.map.neighborhood.AbstractMapNeighborhood
 
getOpenWindows() - Method in class net.imagej.display.DefaultWindowService
 
getOpenWindows() - Method in interface net.imagej.display.WindowService
Gets the list of window files.
getOperation() - Method in class net.imagej.plugins.commands.assign.AddToDataValues
 
getOperation() - Method in class net.imagej.plugins.commands.assign.AndDataValuesWith
 
getOperation() - Method in class net.imagej.plugins.commands.assign.DivideDataValuesBy
 
getOperation() - Method in class net.imagej.plugins.commands.assign.GammaDataValues
 
getOperation() - Method in class net.imagej.plugins.commands.assign.MathCommand
 
getOperation() - Method in class net.imagej.plugins.commands.assign.MaxDataValues
 
getOperation() - Method in class net.imagej.plugins.commands.assign.MinDataValues
 
getOperation() - Method in class net.imagej.plugins.commands.assign.MultiplyDataValuesBy
 
getOperation() - Method in class net.imagej.plugins.commands.assign.OrDataValuesWith
 
getOperation() - Method in class net.imagej.plugins.commands.assign.PowerDataValues
 
getOperation() - Method in class net.imagej.plugins.commands.assign.SetDataValues
 
getOperation() - Method in class net.imagej.plugins.commands.assign.SubtractFromDataValues
 
getOperation() - Method in class net.imagej.plugins.commands.assign.XorDataValuesWith
 
getOperation() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Returns the CalculatorOp that was used in the image calculation.
getOpMap() - Method in class net.imagej.ops.eval.OpEvaluator
Gets the map of Operator to op names backing this evaluator.
getOpName(Operator) - Method in class net.imagej.ops.eval.OpEvaluator
Gets the op name associated with the given Operator.
getOpName(CommandInfo) - Static method in class net.imagej.ops.OpUtils
Gets the string name of an op.
getOps() - Method in class net.imagej.ops.join.DefaultJoinNComputers
 
getOps() - Method in class net.imagej.ops.join.DefaultJoinNInplaces
 
getOps() - Method in interface net.imagej.ops.join.JoinNOps
 
getOptions() - Method in class net.imagej.legacy.IJ1Helper
Delegates to ImageJ 1.x' Macro.getOptions() function.
getOrder() - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean
 
getOrder() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
Sets the current specified ordering of planes along an axis.
getOrigin(int) - Method in class net.imagej.overlay.EllipseOverlay
 
getOrigin(int) - Method in class net.imagej.overlay.RectangleOverlay
 
getOriginalData() - Method in class net.imagej.omero.OMERORefColumn
 
getOutput() - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
getOutput() - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator
 
getOutput() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
getOutput() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Returns the output Dataset of the image calculation.
getOutput() - Method in class net.imagej.plugins.commands.display.CaptureImage
 
getOutput() - Method in class net.imagej.plugins.commands.display.CaptureScreen
 
getOutput() - Method in class net.imagej.plugins.commands.display.Flatten
 
getOutput() - Method in class net.imagej.plugins.commands.display.ShowLUT
 
getOutput() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
 
getOutputAxes() - Method in class net.imagej.sampler.SamplingDefinition
Returns the set of AxisTypes that will be present in the output data.
getOutputCalibratedAxes() - Method in class net.imagej.sampler.SamplingDefinition
Returns the set of CalibratedAxis's that will be present in the output data.
getOutputCalibration(AxisType[]) - Method in class net.imagej.sampler.SamplingDefinition
Deprecated. 
getOutputDims() - Method in class net.imagej.sampler.SamplingDefinition
Returns the dimensions that will be present in the output data.
getOutputDisplay() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
The output image resulting after executing the run() method.
getOutputFactory() - Method in interface net.imagej.ops.join.BufferFactory
 
getOutputFactory() - Method in class net.imagej.ops.join.DefaultJoin2Computers
 
getOutputFactory() - Method in class net.imagej.ops.join.DefaultJoinNComputers
 
getOutputFactory() - Method in class net.imagej.ops.loop.DefaultLoopComputer
 
getOutputFactory() - Method in interface net.imagej.ops.loop.LoopComputer
 
getOutputStream() - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
getOutputStream() - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
getOutputStream() - Method in class net.imagej.updater.util.UpdaterUserInterface
 
getOutputStream() - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
getOutputType() - Method in class net.imagej.convert.ConvertIntArrayToFinalInterval
 
getOutputType() - Method in class net.imagej.convert.ConvertListToFinalInterval
 
getOutputType() - Method in class net.imagej.convert.ConvertLongArrayToFinalInterval
 
getOutputType() - Method in class net.imagej.convert.ConvertRAIToIterableInterval
 
getOutputType() - Method in class net.imagej.convert.DatasetToImgConverter
 
getOutputType() - Method in class net.imagej.convert.DatasetToImgPlusConverter
 
getOutputType() - Method in class net.imagej.convert.ImgLabelingToImgConverter
 
getOutputType() - Method in class net.imagej.convert.ImgToImgLabelingConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.DoubleToImagePlusConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.OverlayToROITreeConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.ResultsTableToGenericTableConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.ResultsTableUnwrapper
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.line.LineToIJLineConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableBoxConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableEllipsoid
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableLine
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePointMask
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolygon2D
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolyline
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableRealPointCollection
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToEllipseRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToLineConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToOvalRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPointRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPolygonRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRotatedRectRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToShapeRoiConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.ROITreeToOverlayConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.TableToResultsTableConverters.AbstractTableToResultsTableConverter
 
getOutputType() - Method in class net.imagej.legacy.convert.TableUnwrapper
 
getOutputType() - Method in class net.imagej.matlab.DatasetMATLABConverter
 
getOutputType() - Method in class net.imagej.matlab.MATLABDatasetConverter
 
getOutputType() - Method in class net.imagej.notebook.mime.MIMEConverter
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJROIToOverlay
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJROIToROITree
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IJLineWrapperToLineData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.RoiWrapperToRectangleData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.TextRoiWrapperToTextData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.MaskPredicateToOverlay
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.MaskPredicateToROITree
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.OverlayToROITree
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.ROITreeToOverlay
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle
 
getOutputType() - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText
 
getOutputType() - Method in class net.imagej.omero.legacy.text.OMEROTextUnwrapper
 
getOutputType() - Method in class net.imagej.omero.legacy.text.OMEROToImageJText
 
getOutputType() - Method in class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper
 
getOutputType() - Method in class net.imagej.omero.legacy.text.TextRoiUnwrapper
 
getOutputType() - Method in class net.imagej.omero.roi.AbstractTreeNodeToROIData
 
getOutputType() - Method in class net.imagej.omero.roi.ellipse.ImageJToOMEROEllipse
 
getOutputType() - Method in class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper
 
getOutputType() - Method in class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
 
getOutputType() - Method in class net.imagej.omero.roi.line.ImageJToOMEROLine
 
getOutputType() - Method in class net.imagej.omero.roi.line.OMEROLineUnwrapper
 
getOutputType() - Method in class net.imagej.omero.roi.line.OMEROToImageJLine
 
getOutputType() - Method in class net.imagej.omero.roi.mask.MaskIntervalToMaskData
 
getOutputType() - Method in class net.imagej.omero.roi.mask.OMEROMaskUnwrapper
 
getOutputType() - Method in class net.imagej.omero.roi.mask.OMEROToImageJMask
 
getOutputType() - Method in class net.imagej.omero.roi.mask.RAIToMaskData
 
getOutputType() - Method in class net.imagej.omero.roi.mask.RealMaskRealIntervalToMaskData
 
getOutputType() - Method in class net.imagej.omero.roi.OMEROROICollectionToROIData
 
getOutputType() - Method in class net.imagej.omero.roi.OMEROROIElementToROIData
 
getOutputType() - Method in class net.imagej.omero.roi.point.ImageJToOMEROPoint
 
getOutputType() - Method in class net.imagej.omero.roi.point.OMEROPointUnwrapper
 
getOutputType() - Method in class net.imagej.omero.roi.point.OMEROToImageJPoint
 
getOutputType() - Method in class net.imagej.omero.roi.point.TreeNodeRPCToROIData
 
getOutputType() - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolygon
 
getOutputType() - Method in class net.imagej.omero.roi.polyshape.ImageJToOMEROPolyline
 
getOutputType() - Method in class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper
 
getOutputType() - Method in class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper
 
getOutputType() - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
 
getOutputType() - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
 
getOutputType() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskToShapeData
 
getOutputType() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMaskToShapeData
 
getOutputType() - Method in class net.imagej.omero.roi.rectangle.ImageJToOMERORectangle
 
getOutputType() - Method in class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper
 
getOutputType() - Method in class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
 
getOutputType() - Method in class net.imagej.omero.roi.ROIDataToOMEROROICollection
 
getOutputType() - Method in class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
 
getOutputType() - Method in class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
 
getOutputType() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealIntervalToShapeData
 
getOutputType() - Method in class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter
 
getOutputType() - Method in class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter
 
getOutputType() - Method in class net.imagej.roi.MaskIntervalToRAIConverter
 
getOutputType() - Method in class net.imagej.roi.MaskToRAConverter
 
getOutputType() - Method in class net.imagej.roi.RAIToMaskIntervalConverter
 
getOutputType() - Method in class net.imagej.roi.RAToMaskConverter
 
getOutputType() - Method in class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
 
getOutputType() - Method in class net.imagej.roi.RealMaskToRRAConverter
 
getOutputType() - Method in class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
 
getOutputType() - Method in class net.imagej.roi.RRAToRealMaskConverter
 
getOutputType() - Method in class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
 
getOutputType() - Method in class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
 
getOutputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
 
getOutputType() - Method in class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
 
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
 
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
 
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
 
getOutputType() - Method in class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
 
getOutputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.DoubleToDoubleTypeConverter
 
getOutputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.FloatToFloatTypeConverter
 
getOutputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.IntegerToIntTypeConverter
 
getOutputType() - Method in class net.imagej.server.converter.NumberToNumericTypeConverters.LongToLongTypeConverter
 
getOutType() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
 
getOutTypes() - Method in class net.imagej.ops.OpRef
Gets the op's output types (one constraint per output), or null for no constraints.
getOverlay() - Method in class net.imagej.display.OverlayInfo
 
getOverlay() - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
getOverlayInfo() - Method in class net.imagej.display.DefaultOverlayService
 
getOverlayInfo(int) - Method in class net.imagej.display.OverlayInfoList
 
getOverlayInfo() - Method in interface net.imagej.display.OverlayService
Returns the overlay info list associated with this service.
getOverlayInfoCount() - Method in class net.imagej.display.OverlayInfoList
 
getOverlays() - Method in class net.imagej.display.DefaultOverlayService
 
getOverlays(ImageDisplay, boolean) - Method in class net.imagej.display.DefaultOverlayService
 
getOverlays(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
 
getOverlays() - Method in interface net.imagej.display.OverlayService
Gets a list of all Overlays.
getOverlays(ImageDisplay, boolean) - Method in interface net.imagej.display.OverlayService
Gets a list of Overlays linked to the given ImageDisplay.
getOverlays(ImageDisplay) - Method in interface net.imagej.display.OverlayService
Gets a list of Overlays linked to the given ImageDisplay.
getOverlays(ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer
Deprecated.
Extracts a list of Overlays from the given ImagePlus.
getP() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
getP0() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
 
getP1() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
 
getP2() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
 
getPaddedInputDimensionsRealToComplex(boolean, Dimensions) - Static method in class net.imagej.ops.filter.fft.FFTMethodsUtility
Calculates padding size size for real to complex FFT
getPageSource(String) - Method in class net.imagej.util.MediaWikiClient
 
getPanCenter() - Method in class net.imagej.display.DefaultImageCanvas
 
getPanCenter() - Method in interface net.imagej.display.Pannable
Gets the coordinates of the data space point currently displayed in the center of the viewport.
getPanel() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
getPanel() - Method in interface net.imagej.ui.swing.viewer.image.SwingImageDisplayViewer
 
getPanOffset() - Method in class net.imagej.display.DefaultImageCanvas
 
getPanOffset() - Method in interface net.imagej.display.Pannable
Gets the absolute offset of the viewport in pixels from the top left.
getPassword() - Method in class net.imagej.omero.OMEROCommand
 
getPassword() - Method in class net.imagej.omero.OMEROLocation
 
getPassword() - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser.Credentials
 
getPassword(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
getPassword(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
getPassword(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
getPassword(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
getPasswordAuthentication() - Method in class net.imagej.ui.swing.updater.SwingAuthenticator
 
getPasswordAuthentication() - Method in class net.imagej.updater.CommandLine.ConsoleAuthenticator
 
getPatchedImageJ1() - Static method in class imagej.patcher.LegacyEnvironment
Deprecated.
Launches a fully-patched, self-contained ImageJ 1.x.
getPatchedImageJ1() - Static method in class net.imagej.patcher.LegacyEnvironment
Launches a fully-patched, self-contained ImageJ 1.x.
GetPath - Class in net.imagej.legacy.plugin
Simple command to get a File and return its path.
GetPath() - Constructor for class net.imagej.legacy.plugin.GetPath
 
getPathForClass() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getPepperValue() - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
 
getPerformInputFFT() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
 
getPerformKernelFFT() - Method in class net.imagej.ops.filter.AbstractFFTFilterC
 
getPermissions() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
 
getPermissions() - Method in interface net.imagej.updater.Uploadable
 
getPermissions() - Method in class net.imagej.updater.UploadableFile
 
getPhase() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
getPhase() - Method in class net.imagej.types.BigComplex
Gets phase as a BigDecimal.
getPhase() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getPhaseDouble() - Method in class net.imagej.types.BigComplex
Gets phase as a double (narrowing possible).
getPhaseDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getPhaseDouble() - Method in class net.imagej.types.PreciseFixedFloatType
 
getPhaseDouble() - Method in class net.imagej.types.UnboundedIntegerType
 
getPhaseFloat() - Method in class net.imagej.types.BigComplex
Gets phase as a float (narrowing possible).
getPhaseFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getPhaseFloat() - Method in class net.imagej.types.PreciseFixedFloatType
 
getPhaseFloat() - Method in class net.imagej.types.UnboundedIntegerType
 
getPhysicalSizeX() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getPhysicalSizeY() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getPhysicalSizeZ() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getPixels() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getPixels() - Method in class net.imagej.render.DummyTextRenderer
 
getPixels() - Method in interface net.imagej.render.TextRenderer
 
getPixels() - Method in class net.imagej.ui.awt.AWTTextRenderer
 
getPixelsHeight() - Method in class net.imagej.render.DummyTextRenderer
 
getPixelsHeight() - Method in interface net.imagej.render.TextRenderer
 
getPixelsHeight() - Method in class net.imagej.ui.awt.AWTTextRenderer
 
getPixelsID() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getPixelsWidth() - Method in class net.imagej.render.DummyTextRenderer
 
getPixelsWidth() - Method in interface net.imagej.render.TextRenderer
 
getPixelsWidth() - Method in class net.imagej.ui.awt.AWTTextRenderer
 
getPixelType() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getPlane(int) - Method in interface net.imagej.Dataset
gets a plane of data from the Dataset.
getPlane(int, boolean) - Method in interface net.imagej.Dataset
gets a plane of data from the Dataset.
getPlane(int) - Method in class net.imagej.DefaultDataset
 
getPlane(int, boolean) - Method in class net.imagej.DefaultDataset
gets a plane of data from the Dataset.
getPlaneExtents() - Method in class net.imagej.display.DefaultImageDisplay
 
getPlaneExtents() - Method in interface net.imagej.display.ImageDisplay
Gets a rectangle defining the extents of the image in the current X/Y plane.
getPlaneOffset() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
Computes the offset of this facet
getPlanePosition() - Method in class net.imagej.display.AbstractDataView
 
getPlanePosition() - Method in interface net.imagej.display.DataView
Gets the N-dimensional plane position of this view.
getPlatform() - Static method in class net.imagej.updater.util.UpdaterUtil
 
getPlatforms() - Method in class net.imagej.updater.FileObject
 
getPluginService() - Method in class net.imagej.display.DefaultImageDisplayService
 
getPluginService() - Method in interface net.imagej.display.ImageDisplayService
 
getPluginService() - Method in class net.imagej.legacy.display.LegacyImageDisplayService
 
getPluginType() - Method in class net.imagej.autoscale.DefaultAutoscaleService
 
getPluginType() - Method in class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService
 
getPluginType() - Method in class net.imagej.ops.DefaultNamespaceService
 
getPluginType() - Method in class net.imagej.ops.DefaultOpService
 
getPluginType() - Method in class net.imagej.types.DefaultDataTypeService
 
getPoint(int) - Method in class net.imagej.overlay.PointOverlay
 
getPoint1(double[]) - Method in class net.imagej.overlay.AngleOverlay
 
getPoint1(int) - Method in class net.imagej.overlay.AngleOverlay
 
getPoint2(double[]) - Method in class net.imagej.overlay.AngleOverlay
 
getPoint2(int) - Method in class net.imagej.overlay.AngleOverlay
 
getPoints() - Method in interface net.imagej.omero.roi.polyshape.OMEROPolygon
 
getPoints() - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyline
 
getPoints() - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
getPoints() - Method in class net.imagej.overlay.PointOverlay
 
getPoints() - Method in interface net.imagej.plugins.commands.assign.noisereduce.Neighborhood
 
getPoints() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeigh
 
getPoints() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeigh
 
getPoints() - Method in class net.imagej.ui.swing.overlay.PointFigure
 
getPointsInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
getPointX() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
getPointY() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
getPort() - Method in class net.imagej.omero.OMEROCommand
 
getPort() - Method in class net.imagej.omero.OMEROLocation
 
getPort() - Method in class net.imagej.options.OptionsProxy
 
getPosition(long[]) - Method in class net.imagej.DrawingTool
Gets this DrawingHelper's current drawing position.
getPosition() - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
getPosition() - Method in class net.imagej.plugins.commands.restructure.AddData
 
getPosition() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
 
getPosition() - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
getPositiveX() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
getPositiveY() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
getPossiblyVersionedFile(File) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getPower() - Method in class net.imagej.types.BigComplex
Gets magnitude as a BigDecimal.
getPower() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getPowerDouble() - Method in class net.imagej.types.BigComplex
Gets magnitude as a double (narrowing possible).
getPowerDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getPowerDouble() - Method in class net.imagej.types.PreciseFixedFloatType
 
getPowerDouble() - Method in class net.imagej.types.UnboundedIntegerType
 
getPowerFloat() - Method in class net.imagej.types.BigComplex
Gets magnitude as a float (narrowing possible).
getPowerFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getPowerFloat() - Method in class net.imagej.types.PreciseFixedFloatType
 
getPowerFloat() - Method in class net.imagej.types.UnboundedIntegerType
 
getPref(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
getPref(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
getPref(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
getPref(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
getPreferredHeight() - Method in interface net.imagej.display.DataView
Gets the view's natural height in pixels.
getPreferredHeight() - Method in class net.imagej.display.DefaultDatasetView
 
getPreferredHeight() - Method in class net.imagej.display.DefaultOverlayView
 
getPreferredSize() - Method in class net.imagej.ui.swing.SwingColorBar
 
getPreferredSizeX() - Method in class net.imagej.widget.HistogramBundle
Gets the preferred X size of the widget for the rendering of this histogram.
getPreferredSizeY() - Method in class net.imagej.widget.HistogramBundle
Gets the preferred Y size of the widget for the rendering of this histogram.
getPreferredWidth() - Method in interface net.imagej.display.DataView
Gets the view's natural width in pixels.
getPreferredWidth() - Method in class net.imagej.display.DefaultDatasetView
 
getPreferredWidth() - Method in class net.imagej.display.DefaultOverlayView
 
getPreview() - Method in class net.imagej.plugins.commands.assign.MathCommand
 
getPreviewCheckbox() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getPreviewCheckbox() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getPrevious() - Method in class net.imagej.updater.FileObject
 
getPrintStream() - Method in class net.imagej.ui.swing.updater.DiffView
Construct a PrintStream adapter to this view.
getProcessingTime() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
getProcessingTime() - Method in interface net.imagej.minmax.MinMaxMethod
 
getProgress(String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
getProjector() - Method in interface net.imagej.display.DatasetView
 
getProjector() - Method in class net.imagej.display.DefaultDatasetView
 
getProperties() - Method in class net.imagej.DefaultDataset
 
getProperties() - Method in interface net.imagej.ImageMetadata
Gets a table of key/value pairs associated with the image.
getProperties() - Method in class net.imagej.ImgPlus
 
getProtocol() - Method in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader
 
getProtocol() - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
getProtocol() - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader
 
getProtocol() - Method in class net.imagej.updater.FileUploader
 
getProtocol() - Method in interface net.imagej.updater.Uploader
TODO
getProtocol() - Static method in class net.imagej.updater.util.HTTPSUtil
 
getProtocols(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection
 
getProxyServer() - Method in class net.imagej.options.OptionsProxy
 
getPValue() - Method in class net.imagej.ops.coloc.pValue.PValueResult
 
getPValues() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
returns the pValue image
getPValuesRandomAccess() - Method in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
returns the pValue image's RandomAccess
getQuantity() - Method in class net.imagej.plugins.commands.restructure.AddData
 
getQuantity() - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
getRadioButtonGroups() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getRadioButtonGroups() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getRadius(int) - Method in class net.imagej.overlay.EllipseOverlay
 
getRadius() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
 
getRange(IterableInterval<T>) - Method in interface net.imagej.autoscale.AutoscaleMethod
Calculates the range of interest from the data contained in the given IterableInterval.
getRange(IterableInterval<T>) - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
 
getRange(IterableInterval<T>) - Method in class net.imagej.autoscale.DefaultAutoscaleMethod
 
getRank() - Method in class net.imagej.updater.UpdateSite
 
getRate() - Method in class net.imagej.plugins.tools.SprayCanTool
 
getReal() - Method in class net.imagej.types.BigComplex
Gets real component of this complex number as a BigDecimal.
getReal() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getRealDouble() - Method in class net.imagej.server.mixins.Mixins.IntegerTypeMixIn
 
getRealDouble() - Method in class net.imagej.server.mixins.Mixins.RealTypeMixIn
 
getRealDouble() - Method in class net.imagej.types.BigComplex
Gets real component as a double (narrowing possible).
getRealDouble() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getRealDouble() - Method in class net.imagej.types.PreciseFixedFloatType
 
getRealDouble() - Method in class net.imagej.types.UnboundedIntegerType
 
getRealFloat() - Method in class net.imagej.types.BigComplex
Gets real component as a float (narrowing possible).
getRealFloat() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
getRealFloat() - Method in class net.imagej.types.PreciseFixedFloatType
 
getRealFloat() - Method in class net.imagej.types.UnboundedIntegerType
 
getRecursively(URLClassLoader, File) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getRecursively(URLClassLoader, boolean, File) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getRecursivelyInImageJDirectory(URLClassLoader, String...) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getRecursivelyInImageJDirectory(URLClassLoader, boolean, String...) - Static method in class net.imagej.launcher.ClassLoaderPlus
 
getRef() - Method in class net.imagej.ops.OpCandidate
Gets the op reference describing the desired match.
getRegionOfInterest() - Method in class net.imagej.overlay.AbstractOverlay
 
getRegionOfInterest() - Method in class net.imagej.overlay.AbstractROIOverlay
 
getRegionOfInterest() - Method in interface net.imagej.overlay.Overlay
Retrieves the ImgLib region of interest, if any, that knows how to determine whether a pixel is included in the overlay.
getRegionOrigin() - Method in class net.imagej.plugins.commands.assign.InplaceUnaryTransform
 
getRegionSpan() - Method in class net.imagej.plugins.commands.assign.InplaceUnaryTransform
 
getRemoves() - Method in class net.imagej.ui.swing.updater.DiffView
Get the number of removed lines.
getResolutions() - Method in class net.imagej.updater.Conflicts.Conflict
 
getResource(String) - Method in class imagej.patcher.LegacyClassLoader
Deprecated.
 
getResource(String) - Method in class net.imagej.patcher.LegacyClassLoader
 
getResult() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm
 
getResult() - Method in class net.imagej.plugins.commands.rotate.XYFlipper
Returns the resulting output image
getResultLimit() - Method in class net.imagej.legacy.search.SearchOptions
 
getRoi() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
 
getRoi() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
 
getRoi() - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
getRoi() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
getRoi() - Method in interface net.imagej.legacy.convert.roi.IJRoiWrapper
Returns the backing ImageJ 1.x Roi.
getRoi() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
 
getRoi() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
 
getRoi() - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper
 
getRoi() - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper
 
getRoi() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
 
getROIMapping(Object) - Method in class net.imagej.omero.DefaultOMEROService
 
getROIMapping(Object) - Method in class net.imagej.omero.legacy.LegacyOMEROService
 
getROIMapping(Object) - Method in interface net.imagej.omero.OMEROService
Retrieve the ROIData associated with this key.
getROIMappingKeys() - Method in class net.imagej.omero.DefaultOMEROService
 
getROIMappingKeys() - Method in interface net.imagej.omero.OMEROService
Returns all the keys for mapped ROIs.
getRois() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getROIs(Dataset) - Method in interface net.imagej.roi.ROIService
Returns the ROITree of the given Dataset
getRowCount() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
getRowCount() - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
getRowCount() - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
getRowHeader(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
getRowIndex(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
getSaltValue() - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
 
getScreenImage() - Method in interface net.imagej.display.DatasetView
 
getScreenImage() - Method in class net.imagej.display.DefaultDatasetView
 
getScriptEngine() - Method in class net.imagej.legacy.plugin.IJ1MacroLanguage
 
getScriptsAndNonLegacyCommands() - Method in class net.imagej.legacy.LegacyService
This is not part of the public API.
getSearchBar() - Method in class net.imagej.legacy.IJ1Helper
 
getSecond() - Method in class net.imagej.ops.join.DefaultJoin2Computers
 
getSecond() - Method in class net.imagej.ops.join.DefaultJoin2Inplaces
 
getSecond() - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace
 
getSecond() - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer
 
getSecond() - Method in interface net.imagej.ops.join.Join2Ops
 
getSecurityContext() - Method in class net.imagej.omero.DefaultOMEROSession
 
getSecurityContext() - Method in interface net.imagej.omero.OMEROSession
Gets the SecurityContext associated with this OMEROSession
getSeed() - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
 
getSeed() - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian
 
getSeed() - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform
 
getSelectedFiles() - Method in class net.imagej.ui.swing.updater.FileTable
 
getSelectedFiles(int) - Method in class net.imagej.ui.swing.updater.FileTable
 
getSelectionBounds(ImageDisplay) - Method in class net.imagej.display.DefaultOverlayService
 
getSelectionBounds(ImageDisplay) - Method in interface net.imagej.display.OverlayService
Gets the bounding box for the selected overlays in the given ImageDisplay.
getSelectionColor() - Method in class net.imagej.options.OptionsAppearance
 
getServer() - Method in class net.imagej.omero.OMEROCommand
 
getServer() - Method in class net.imagej.omero.OMEROLocation
 
getSession() - Method in class net.imagej.omero.DefaultOMEROSession
 
getSession() - Method in interface net.imagej.omero.OMEROSession
Gets the ServiceFactoryPrx associated with this OMEROSession
getSessionID() - Method in class net.imagej.omero.DefaultOMEROSession
 
getSessionID() - Method in class net.imagej.omero.OMEROLocation
 
getSessionID() - Method in interface net.imagej.omero.OMEROSession
Gets the session ID associated with this OMEROSession
getSeverity() - Method in class net.imagej.updater.Conflicts.Conflict
 
getShape() - Method in class net.imagej.omero.legacy.text.OMEROText
 
getShape() - Method in class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval
 
getShape() - Method in interface net.imagej.omero.roi.OMERORealMask
 
getShape() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMask
 
getShape() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval
 
getShape() - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
Get the shape (structuring element) used by this filter.
getShape() - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
Get the shape (structuring element) used by this filter.
getShape() - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral
Get the shape (structuring element) used by this filter.
getShortcuts() - Method in class net.imagej.legacy.IJ1Helper
 
getShortName() - Method in class net.imagej.ImageJ
 
getSimpleName() - Method in class net.imagej.ops.OpInfo
Gets the name without namespace prefix.
getSiteName() - Method in class net.imagej.updater.FilesUploader
 
getSiteNamesToUpload() - Method in class net.imagej.updater.FilesCollection
 
getSizeC() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getSizeT() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getSizeX() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getSizeY() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getSizeZ() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getSliders() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getSliders() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getSoftMaximum() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getSoftMinimum() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getSortedData() - Method in class net.imagej.ops.coloc.MergeSort
 
getSortedEntries(JarFile) - Static method in class net.imagej.updater.Diff
Make an alphabetically-sorted list of files inside a .jar file.
getSource() - Method in class net.imagej.DefaultDataset
 
getSource() - Method in class net.imagej.ImgPlus
 
getSource() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
getSource() - Method in class net.imagej.legacy.convert.roi.box.BoxWrapper
 
getSource() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper
 
getSource() - Method in class net.imagej.legacy.convert.roi.line.LineWrapper
 
getSource() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper
Get associated MaskPredicate.
getSource() - Method in class net.imagej.legacy.convert.roi.point.PointMaskWrapper
 
getSource() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper
 
getSource() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper
 
getSource() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineWrapper
 
getSource() - Method in class net.imagej.legacy.convert.TableListWrapper
Returns the source List<Table<?, ?>>.
getSource() - Method in class net.imagej.legacy.convert.TableWrapper
 
getSource() - Method in class net.imagej.omero.legacy.LazyOverlay
Returns the source LazyROITree.
getSource() - Method in class net.imagej.omero.legacy.mask.OMEROMaskWrapper
 
getSource() - Method in class net.imagej.omero.legacy.text.OMEROTextWrapper
 
getSource() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
 
getSource() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskRealInterval
 
getSource() - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMask
 
getSource() - Method in interface net.imagej.Sourced
Gets the source String
getSourceFile() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getSpacing(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Gets the reslice spacing for a given axis.
getStackThreads() - Method in class net.imagej.options.OptionsMemoryAndThreads
Returns the number of stack threads that should be allocated for use by ImageJ.
getStartArrowStyle() - Method in class net.imagej.options.OptionsOverlay
 
getStartArrowStyle() - Method in class net.imagej.overlay.OverlaySettings
 
getStartingWavelength() - Method in class net.imagej.plugins.commands.display.SpectralComposite
 
getStartLineArrowStyle() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
getStartPoint() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
getStatus() - Method in class net.imagej.ops.OpCandidate
Gets a descriptive status message in human readable form.
getStatus() - Method in class net.imagej.tensorflow.DefaultTensorFlowService
 
getStatus() - Method in interface net.imagej.tensorflow.TensorFlowService
 
getStatus() - Method in class net.imagej.updater.FileObject
 
getStatusBar() - Method in class net.imagej.legacy.IJ1Helper
 
getStatusBar() - Method in class net.imagej.legacy.ui.LegacyUI
 
getStatusCode() - Method in class net.imagej.ops.OpCandidate
Gets the matching status code.
getStatusItem() - Method in class net.imagej.ops.OpCandidate
Gets the status item related to the matching status, if any.
getStatusMessage() - Method in class net.imagej.ops.OpCandidate
Gets a message elaborating on the matching status, if any.
getStdDev() - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
getStepSize() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getString(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
getString(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
getString(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
getString(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
getStringConstant(int) - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getStringFields() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getStringFields() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getStrokeColor() - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
getStrokeWidth() - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
getStubPath() - Method in class net.imagej.legacy.SingleInstance
 
getStyle(Color, boolean, boolean, String, int) - Static method in class net.imagej.ui.swing.updater.DiffView
Create an attribute set for stylish text.
getStyle(Color, boolean, boolean, String, int) - Static method in class net.imagej.ui.swing.updater.FileDetails
 
getSubcomponents() - Method in class net.imagej.overlay.CompositeOverlay
 
getSuperclass() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
getSystemClipboard() - Method in class net.imagej.legacy.ui.LegacyUI
 
getTableFileExtension() - Method in class net.imagej.options.OptionsInputOutput
 
getTables() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getTables(Dataset) - Method in class net.imagej.table.DefaultTableService
 
getTables(Dataset) - Method in interface net.imagej.table.TableService
Retrieves the Tables attached to the given Dataset.
getTargetJavaVersion() - Method in class net.imagej.options.OptionsCompiler
 
getTargetWidgetStyle(ModuleItem<?>) - Method in class net.imagej.batch.input.DatasetBatchInputProvider
 
getTensorFlowJAR() - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
 
getTensorFlowJARVersion(URL) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
 
getTensorFlowVersion() - Method in class net.imagej.tensorflow.DefaultTensorFlowService
 
getTensorFlowVersion() - Method in interface net.imagej.tensorflow.TensorFlowService
 
getText(O) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi
 
getText(OMEROEllipse) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi
 
getText(OMEROLine) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine
 
getText(OMEROMask) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi
 
getText(OMEROPoint) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi
 
getText(OMEROPolygon) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi
 
getText(OMEROPolyline) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi
 
getText(OMERORectangle) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi
 
getText(OMEROText) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi
 
getText() - Method in class net.imagej.omero.legacy.text.OMEROText
 
getText() - Method in class net.imagej.overlay.TextOverlay
 
getTextAntialiasing() - Method in class net.imagej.DrawingTool
Get the drawn text antialiasing value: on (true) or off (false)
getTextArea1() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getTextArea1() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getTextArea2() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
getTextArea2() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
getTextRenderer() - Method in class net.imagej.render.DummyRenderingService
 
getTextRenderer() - Method in interface net.imagej.render.RenderingService
 
getTextRenderer() - Method in class net.imagej.ui.awt.AWTRenderingService
 
getTextValue(TextData) - Method in class net.imagej.omero.legacy.text.OMEROTextUnwrapper
 
getTextValue(TextData) - Method in class net.imagej.omero.legacy.text.OMEROToImageJText
 
getTextValue(S) - Method in class net.imagej.omero.roi.AbstractOMERORealMaskUnwrapper
 
getTextValue(S) - Method in class net.imagej.omero.roi.AbstractShapeDataToRealMaskRealInterval
 
getTextValue(EllipseData) - Method in class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper
 
getTextValue(EllipseData) - Method in class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
 
getTextValue(LineData) - Method in class net.imagej.omero.roi.line.OMEROLineUnwrapper
 
getTextValue(LineData) - Method in class net.imagej.omero.roi.line.OMEROToImageJLine
 
getTextValue(MaskData) - Method in class net.imagej.omero.roi.mask.OMEROMaskUnwrapper
 
getTextValue(MaskData) - Method in class net.imagej.omero.roi.mask.OMEROToImageJMask
 
getTextValue(PointData) - Method in class net.imagej.omero.roi.point.OMEROPointUnwrapper
 
getTextValue(PointData) - Method in class net.imagej.omero.roi.point.OMEROToImageJPoint
 
getTextValue(PolygonData) - Method in class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper
 
getTextValue(PolylineData) - Method in class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper
 
getTextValue(PolygonData) - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
 
getTextValue(PolylineData) - Method in class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
 
getTextValue(RectangleData) - Method in class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper
 
getTextValue(RectangleData) - Method in class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
 
getTheoreticalMax() - Method in class net.imagej.widget.HistogramBundle
Gets the maximum value of the desired range.
getTheoreticalMin() - Method in class net.imagej.widget.HistogramBundle
Gets the minimum value of the desired range.
getThreadAncestors() - Method in class net.imagej.legacy.DefaultLegacyHooks
 
getThreadAncestors() - Method in class net.imagej.patcher.LegacyHooks
Iterates through the current thread's ancestors.
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.apply.ApplyManualThreshold
 
getThreshold(I) - Method in interface net.imagej.ops.threshold.ApplyThresholdIterable
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Huang
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.IJ1
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Intermodes
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.IsoData
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Li
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MaxEntropy
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MaxLikelihood
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Mean
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MinError
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Minimum
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Moments
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Otsu
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Percentile
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.RenyiEntropy
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Rosin
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Shanbhag
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Triangle
 
getThreshold(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Yen
 
getThresholdComputer() - Method in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
getTimeIncrement() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getTimePosition() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
 
getTimestamp() - Method in class net.imagej.updater.AbstractUploader
 
getTimestamp() - Method in class net.imagej.updater.FileObject
 
getTimestamp() - Method in class net.imagej.updater.UpdateSite
 
getTimestamp() - Method in interface net.imagej.updater.Uploader
TODO
getTimestamp(File) - Static method in class net.imagej.updater.util.UpdaterUtil
 
getTitle(Object) - Static method in class net.imagej.legacy.IJ1Helper
Returns ImagePlus.getTitle() if the object is an ImagePlus, otherwise null.
getTolerance() - Method in class net.imagej.options.OptionsWandTool
 
getToolBar() - Method in class net.imagej.legacy.IJ1Helper
 
getToolBar() - Method in class net.imagej.legacy.ui.LegacyUI
 
getTransformRestoreData() - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
getTransformRestoreData() - Method in class net.imagej.ui.swing.overlay.PointFigure
 
getTransformRestoreData() - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
getTransparentIndex() - Method in class net.imagej.options.OptionsInputOutput
 
getType() - Method in interface net.imagej.Dataset
TODO
getType() - Method in class net.imagej.DefaultDataset
 
getType() - Method in class net.imagej.ops.map.AbstractMapView
 
getType() - Method in interface net.imagej.ops.map.MapView
 
getType() - Method in class net.imagej.ops.OpInfo
Gets the type of op, as specified via @Plugin(type = <type>)).
getType() - Method in interface net.imagej.types.DataType
Provides an example of the underlying NumericType.
getType() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
getType() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
getType() - Method in class net.imagej.types.DataType16BitSignedInteger
 
getType() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
getType() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
getType() - Method in class net.imagej.types.DataType32BitSignedFloat
 
getType() - Method in class net.imagej.types.DataType32BitSignedInteger
 
getType() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
getType() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
getType() - Method in class net.imagej.types.DataType64BitSignedFloat
 
getType() - Method in class net.imagej.types.DataType64BitSignedInteger
 
getType() - Method in class net.imagej.types.DataType8BitSignedInteger
 
getType() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
getType() - Method in class net.imagej.types.DataTypeBoolean
 
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
getType() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
getType() - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
 
getTypeByAttributes(int, boolean, boolean, boolean, boolean) - Method in interface net.imagej.types.DataTypeService
Returns the DataType whose internal type class matches the given specifications exactly.
getTypeByAttributes(int, boolean, boolean, boolean, boolean) - Method in class net.imagej.types.DefaultDataTypeService
 
getTypeByClass(Class<?>) - Method in interface net.imagej.types.DataTypeService
Returns the DataType whose internal type class matches the given typeClass.
getTypeByClass(Class<?>) - Method in class net.imagej.types.DefaultDataTypeService
 
getTypeByName(String) - Method in interface net.imagej.types.DataTypeService
Returns the DataType whose internal name matches the given typeName.
getTypeByName(String) - Method in class net.imagej.types.DefaultDataTypeService
 
getTypeLabelLong() - Method in interface net.imagej.Dataset
Gets the full string description of the dataset's pixel type.
getTypeLabelLong() - Method in class net.imagej.DefaultDataset
 
getTypeLabelShort() - Method in interface net.imagej.Dataset
Gets a short string description of the dataset's pixel type.
getTypeLabelShort() - Method in class net.imagej.DefaultDataset
 
getTypes() - Method in class net.imagej.ops.OpRef
Gets the types which the op must match.
getUAxis() - Method in class net.imagej.DrawingTool
Returns the index of the U axis of this Drawing Tool.
getUI() - Method in class net.imagej.legacy.ui.LegacyInputHarvester
 
getUnit() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
Gets the current angle unit setting (radians or degrees).
getUnit(int) - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
getUpdatedServerROIData(long) - Method in class net.imagej.omero.DefaultOMEROService
 
getUpdatedServerROIData(long) - Method in interface net.imagej.omero.OMEROService
Returns the most recently retrieved ROIData object with the given ID.
getUpdatedSource() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper
Synchronize the two ROIs, and return the associated MaskPredicate.
getUpdatedSource() - Method in class net.imagej.legacy.convert.TableListWrapper
Synchronizes and returns the source List<Table<?, ?>>.
getUpdateLibDir(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
 
getUpdaterFiles(FilesCollection, CommandService, boolean) - Static method in class net.imagej.updater.Installer
 
getUpdateSite(int) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
getUpdateSite(String) - Method in class net.imagej.updater.DefaultUpdateService
 
getUpdateSite(File) - Method in class net.imagej.updater.DefaultUpdateService
 
getUpdateSite(String) - Method in class net.imagej.updater.FilesCollection
getUpdateSite(String, boolean) - Method in class net.imagej.updater.FilesCollection
 
getUpdateSite(String) - Method in interface net.imagej.updater.UpdateService
Gets the update site with the given name.
getUpdateSite(File) - Method in interface net.imagej.updater.UpdateService
Gets the update site housing the given file.
getUpdateSiteName(int) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
getUpdateSiteNames() - Method in class net.imagej.updater.FilesCollection
getUpdateSiteNames(boolean) - Method in class net.imagej.updater.FilesCollection
Gets the names of known update sites.
getUpdateSites(boolean) - Method in class net.imagej.updater.FilesCollection
Gets the list of known update sites.
getUploadDirectory() - Method in class net.imagej.updater.FilesUploader
 
getUploadDirectory() - Method in class net.imagej.updater.UpdateSite
 
getUploader(String) - Method in class net.imagej.updater.DefaultUploaderService
 
getUploader(String) - Method in interface net.imagej.updater.UploaderService
TODO.
getUploaderService() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
Gets the uploader service associated with this updater frame.
getUploadHost() - Method in class net.imagej.updater.FilesUploader
 
getUploadProtocol() - Method in class net.imagej.updater.UpdateSite
 
getUpperTailProportion() - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
Returns the fractional proportion of the distribution to count as in upper tail.
getURL(FileObject) - Method in class net.imagej.updater.FilesCollection
 
getURL() - Method in class net.imagej.updater.UpdateSite
 
getURL() - Method in interface net.imagej.updater.util.Downloadable
 
getUser() - Method in class net.imagej.omero.OMEROCommand
 
getUser() - Method in class net.imagej.omero.OMEROLocation
 
getUsername() - Method in class net.imagej.plugins.uploaders.webdav.NetrcParser.Credentials
 
getUsername(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
getValidActions() - Method in class net.imagej.updater.FilesCollection
 
getValidActions(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection
 
getValidBits() - Method in class net.imagej.DefaultDataset
 
getValidBits() - Method in interface net.imagej.ImageMetadata
Gets the number of valid bits (if applicable to this Img).
getValidBits() - Method in class net.imagej.ImgPlus
 
getValue() - Method in class net.imagej.display.process.ActiveChannelCollectionPreprocessor
 
getValue() - Method in class net.imagej.display.process.ActiveDatasetPreprocessor
 
getValue() - Method in class net.imagej.display.process.ActiveDatasetViewPreprocessor
 
getValue() - Method in class net.imagej.display.process.ActiveDataViewPreprocessor
 
getValue() - Method in class net.imagej.display.process.ActiveImageDisplayPreprocessor
 
getValue() - Method in class net.imagej.display.process.ActiveOverlayPreprocessor
 
getValue() - Method in class net.imagej.display.process.ActivePositionPreprocessor
 
getValue() - Method in class net.imagej.display.process.SingleInputPreprocessor
Gets the single input value to populate.
getValue() - Method in class net.imagej.matlab.MATLABNumericArrayPreprocessor
 
getValue() - Method in class net.imagej.omero.legacy.LegacyROIPreprocessor
 
getValue() - Method in class net.imagej.plugins.commands.assign.AddToDataValues
 
getValue() - Method in class net.imagej.plugins.commands.assign.AndDataValuesWith
 
getValue() - Method in class net.imagej.plugins.commands.assign.DivideDataValuesBy
 
getValue() - Method in class net.imagej.plugins.commands.assign.GammaDataValues
 
getValue() - Method in class net.imagej.plugins.commands.assign.MaxDataValues
 
getValue() - Method in class net.imagej.plugins.commands.assign.MinDataValues
 
getValue() - Method in class net.imagej.plugins.commands.assign.MultiplyDataValuesBy
 
getValue() - Method in class net.imagej.plugins.commands.assign.OrDataValuesWith
 
getValue() - Method in class net.imagej.plugins.commands.assign.PowerDataValues
 
getValue() - Method in class net.imagej.plugins.commands.assign.SetDataValues
 
getValue() - Method in class net.imagej.plugins.commands.assign.SubtractFromDataValues
 
getValue() - Method in class net.imagej.plugins.commands.assign.XorDataValuesWith
 
getValue() - Method in class net.imagej.ui.swing.widget.SwingColorTableWidget
 
getValue() - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget
 
getValue() - Method in class net.imagej.ui.swing.widget.SwingHistogramWidget
 
getValueAt(int, int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
getValueAt(int, int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
getValueAtDim(int) - Method in interface net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation
 
getValueAtDim(int) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D
 
getValueAtDim(int) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D
 
getValueMethod() - Method in class net.imagej.plugins.commands.imglib.Binner
Gets the value method used to combine pixels.
getValues() - Method in class net.imagej.plugins.tools.PixelRecorder
Returns the values of all the channels associated with the processed mouse event.
getVar(int, String) - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
getVariable(Object, String) - Method in class net.imagej.legacy.IJ1Helper
Gets the value of the specified variable, from the given macro Interpreter.
getVariables(Object) - Method in class net.imagej.legacy.IJ1Helper
Gets the value of the specified variable, from the given macro Interpreter.
getVAxis() - Method in class net.imagej.DrawingTool
Returns the index of the V axis of this Drawing Tool.
getVersion() - Method in class net.imagej.app.ToplevelImageJApp
 
getVersion() - Method in class net.imagej.legacy.command.LegacyCommandInfo
 
getVersion() - Method in class net.imagej.legacy.IJ1Helper
Gets the version of ImageJ 1.x.
getVersion() - Method in class net.imagej.legacy.LegacyImageJApp
 
getVersion() - Method in class net.imagej.legacy.LegacyService
Gets the version of ImageJ 1.x being used.
getVersion() - Method in class net.imagej.omero.ModuleAdapter
Gets the version of the associated ImageJ module.
getVersionNumber() - Method in class net.imagej.tensorflow.TensorFlowVersion
 
getVerticesInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
All points which are in front of this plane.
getView() - Method in class net.imagej.command.AbstractPlanarCommand
 
getView() - Method in interface net.imagej.command.PlanarCommand
 
getView() - Method in class net.imagej.display.event.DataViewEvent
 
getView() - Method in class net.imagej.plugins.commands.display.ChannelsTool
 
getView() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
getView() - Method in class net.imagej.plugins.commands.display.SpectralComposite
 
getView() - Method in class net.imagej.ui.swing.overlay.FigureCreatedEvent
 
getView(FileTable) - Method in class net.imagej.ui.swing.updater.ViewOptions
 
getViewportHeight() - Method in class net.imagej.display.DefaultImageCanvas
 
getViewportHeight() - Method in interface net.imagej.display.ImageCanvas
Gets the current height of the canvas viewport in panel coordinates.
getViewportWidth() - Method in class net.imagej.display.DefaultImageCanvas
 
getViewportWidth() - Method in interface net.imagej.display.ImageCanvas
Gets the current width of the canvas viewport in panel coordinates.
getWarnings() - Method in class net.imagej.updater.XMLFileDownloader
 
getWarnings() - Method in class net.imagej.updater.XMLFileReader
 
getWaveIncrement() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getWaveStart() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
getWidget(String) - Method in class net.imagej.server.resources.ModulesResource
Gets more detailed information of a module with the given ID.
getWidgetStyle() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
getWidth() - Method in interface net.imagej.Dataset
Gets the length of the Axes.X axis, or 1 if no such axis.
getWidth() - Method in class net.imagej.options.OptionsProfilePlot
 
getWidth() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
getWidth() - Method in class net.imagej.plugins.tools.SprayCanTool
 
getWindow() - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
getX() - Method in class net.imagej.legacy.IJ1Helper
 
getX() - Method in class net.imagej.omero.legacy.text.OMEROText
Returns the x coordinate of the lower left corner of the text.
getX() - Method in class net.imagej.ui.swing.overlay.PointFigure
 
getY() - Method in class net.imagej.legacy.IJ1Helper
 
getY() - Method in class net.imagej.omero.legacy.text.OMEROText
Returns the y coordinate of the lower left corner of the text.
getY() - Method in class net.imagej.ui.swing.overlay.PointFigure
 
getZernikeMoment(IterableInterval<I>) - Method in class net.imagej.ops.features.zernike.AbstractZernikeFeature
Computes a specific zernike moment or order n and repitition m
getZm() - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
getZoomFactor() - Method in class net.imagej.display.DefaultImageCanvas
 
getZoomFactor() - Method in interface net.imagej.display.Zoomable
Gets the current zoom level.
getZoomPercent() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
getZoomScaleOption() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
Implement this in the derived class to get the user's preference for displaying zoom scale (as a fraction or percent)
getZPosition() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
 
gitVersion - Static variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
GlobalThresholder<T extends RealType<T>> - Class in net.imagej.ops.commands.threshold
TODO: should actually live in a different package!! OR: can this be auto-generated?? (e.g.
GlobalThresholder() - Constructor for class net.imagej.ops.commands.threshold.GlobalThresholder
 
grab(DatasetView, String) - Method in class net.imagej.ImageGrabber
Creates a merged color Dataset from a DatasetView.
gradients - Variable in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
 
GraphBuilder - Class in net.imagej.tensorflow
 
GraphBuilder(Graph) - Constructor for class net.imagej.tensorflow.GraphBuilder
 
GRAYS - Static variable in class net.imagej.display.ColorTables
 
GRAYSCALE - Static variable in class net.imagej.plugins.commands.display.ChannelsTool
 
greaterThan(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
greaterThan(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThan(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThan(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThan(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThan(O, I, I) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThanOrEqual(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
greaterThanOrEqual(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThanOrEqual(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThanOrEqual(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThanOrEqual(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
 
greaterThanOrEqual(O, I, I) - Method in class net.imagej.ops.logic.LogicNamespace
 
GREEN - Static variable in class net.imagej.display.ColorTables
 
green - Variable in class net.imagej.ui.swing.updater.DiffView
 
green(String) - Method in class net.imagej.ui.swing.updater.DiffView
Add some green text.
green(int, String) - Method in class net.imagej.ui.swing.updater.DiffView
Insert some green text.
GroupAction - Interface in net.imagej.updater
A common interface for all actions to be applied to a set of files.
GuoHallThinningStrategy - Class in net.imagej.ops.morphology.thin
Represents the thinning algorithm proposed by Z.
GuoHallThinningStrategy() - Constructor for class net.imagej.ops.morphology.thin.GuoHallThinningStrategy
 
GuoHallThinningStrategy(boolean) - Constructor for class net.imagej.ops.morphology.thin.GuoHallThinningStrategy
Create a new Guo-Hall thinning strategy.

H

handCursor - Variable in class net.imagej.ui.swing.updater.DiffView
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Batch
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Debug
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Eval
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Filename
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.IJPath
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Macro
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Port
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Run
 
handle(LinkedList<String>) - Method in class net.imagej.legacy.SingleInstanceArgument
 
handle(CtBehavior) - Method in class net.imagej.patcher.MemoryProfiler
 
handle(LinkedList<String>) - Method in class net.imagej.server.console.ServerArgument
 
handle(String) - Method in class net.imagej.updater.Checksummer
Handle a single component, adding conflicts if there are multiple versions.
handle(Checksummer.StringAndFile) - Method in class net.imagej.updater.Checksummer
 
handleBatchExit(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline
 
handleBatchOption(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline
 
handleException(Throwable) - Method in class net.imagej.legacy.IJ1Helper
Delegate exception handling to ImageJ 1.x.
handleException(Throwable) - Method in class net.imagej.legacy.LegacyService
 
handleException(Throwable) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
handleException(Throwable) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
handleException(Throwable) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
handleException(Throwable) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
handleExtraPluginJars() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Extension point to add to ImageJ 1.x' PluginClassLoader's class path.
handleExtraPluginJars() - Method in class net.imagej.patcher.LegacyHooks
Extension point to add to ImageJ 1.x' PluginClassLoader's class path.
handleNoSuchMethodError(NoSuchMethodError) - Method in class imagej.patcher.EssentialLegacyHooks
Deprecated.
 
handleNoSuchMethodError(NoSuchMethodError) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Extension point to enhance ImageJ 1.x' error reporting upon NoSuchMethodError.
handleNoSuchMethodError(NoSuchMethodError) - Method in class net.imagej.patcher.LegacyHooks
Extension point to enhance ImageJ 1.x' error reporting upon NoSuchMethodError.
handleQueue() - Method in class net.imagej.updater.Checksummer
 
haralick() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "haralick" namespace.
HaralickFeature<T extends RealType<T>> - Interface in net.imagej.ops.features.haralick
Simple marker interface for Haralick Features.
HaralickNamespace - Class in net.imagej.ops.features.haralick
Namespace for Haralick Features
HaralickNamespace() - Constructor for class net.imagej.ops.features.haralick.HaralickNamespace
 
harmonicMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
harmonicMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
Harmonizer - Class in net.imagej.legacy.translate
Provides methods for synchronizing data between an ImageDisplay and an ImagePlus.
Harmonizer(Context, ImageTranslator) - Constructor for class net.imagej.legacy.translate.Harmonizer
 
has(FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection
 
hasChanges() - Method in class net.imagej.updater.FilesCollection
 
hasChanges() - Method in class net.imagej.widget.HistogramBundle
Returns true if the bundle has been changed via use of some of the field setting api.
hasDependency(String) - Method in class net.imagej.updater.FileObject
 
hasDoubleRepresentation() - Method in interface net.imagej.types.DataType
Returns true if data can be encoded in a double with no precision loss.
hasDoubleRepresentation() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType16BitSignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitSignedFloat
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitSignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedFloat
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType64BitSignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType8BitSignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeBoolean
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
hasDoubleRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
hasDownloadConflicts() - Method in class net.imagej.updater.Conflicts
 
hasForcableUpdates() - Method in class net.imagej.updater.FilesCollection
 
hashCode() - Method in class net.imagej.axis.AbstractCalibratedAxis
 
hashCode() - Method in class net.imagej.axis.EnumeratedAxis
 
hashCode() - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
 
hashCode() - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
hashCode() - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
 
hashCode() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
 
hashCode() - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
 
hashCode() - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper
 
hashCode() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
 
hashCode() - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper
 
hashCode() - Method in class net.imagej.omero.OMEROLocation
 
hashCode() - Method in class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse
 
hashCode() - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
 
hashCode() - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask
 
hashCode() - Method in class net.imagej.omero.roi.point.DefaultOMEROPoint
 
hashCode() - Method in class net.imagej.omero.roi.polyshape.AbstractOMEROPolygon
 
hashCode() - Method in class net.imagej.omero.roi.polyshape.DefaultOMEROPolyline
 
hashCode() - Method in class net.imagej.omero.roi.rectangle.AbstractOMERORectangle
 
hashCode() - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
 
hashCode() - Method in class net.imagej.ops.OpInfo
 
hashCode() - Method in class net.imagej.ops.OpRef
 
hashCode() - Method in class net.imagej.tensorflow.TensorFlowVersion
 
hashCode() - Method in class net.imagej.updater.FileObject.Version
 
hashCode() - Method in class net.imagej.updater.UpdateSite
 
hasImageJUserSiteProtocolUpdates(FilesCollection) - Static method in class net.imagej.updater.util.HTTPSUtil
 
hasInstance() - Method in class net.imagej.legacy.IJ1Helper
 
hasLongRepresentation() - Method in interface net.imagej.types.DataType
Returns true if data can be encoded in a long with no precision loss.
hasLongRepresentation() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
hasLongRepresentation() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataType16BitSignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataType32BitSignedFloat
 
hasLongRepresentation() - Method in class net.imagej.types.DataType32BitSignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedFloat
 
hasLongRepresentation() - Method in class net.imagej.types.DataType64BitSignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataType8BitSignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
hasLongRepresentation() - Method in class net.imagej.types.DataTypeBoolean
 
hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
hasLongRepresentation() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
hasMetadataChanges() - Method in class net.imagej.updater.FilesCollection
 
hasNext() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
hasNext() - Method in class net.imagej.Position
Returns true if position can be moved forward (i.e.
hasNext() - Method in class net.imagej.updater.FilesCollection.FilteredIterator
 
hasPrev() - Method in class net.imagej.Position
Returns true if position can be moved backward (i.e.
hasPreviousVersion(String) - Method in class net.imagej.updater.FileObject
 
hasROIs(Object) - Method in class net.imagej.omero.legacy.LegacyOMEROROIService
 
hasROIs(Object) - Method in interface net.imagej.roi.ROIService
Check if the given Object is or has ROIs
hasUpdateSitesChanges() - Method in class net.imagej.updater.FilesCollection
 
hasUpdateSiteURLUpdates(FilesCollection) - Static method in class net.imagej.updater.util.AvailableSites
Checks whether for all update sites of a given FilesCollection there is an updated URL on the remote list of available update sites.
hasUpdateSiteURLUpdates(FilesCollection, Map<String, UpdateSite>) - Static method in class net.imagej.updater.util.AvailableSites
Checks whether for all update sites of a given FilesCollection there is an updated URL on the given list of available sites.
hasUploadableSites() - Method in class net.imagej.updater.FilesCollection
 
hasUploadConflicts() - Method in class net.imagej.updater.Conflicts
 
hasUploader(String) - Method in class net.imagej.updater.DefaultUploaderService
 
hasUploader() - Method in class net.imagej.updater.FilesUploader
 
hasUploader(String) - Method in interface net.imagej.updater.UploaderService
TODO.
hasUploadOrRemove() - Method in class net.imagej.updater.FilesCollection
 
haveNetworkConnection() - Static method in class net.imagej.updater.UpToDate
 
HEADER - Static variable in class net.imagej.mesh.io.stl.STLMeshIO
 
HEADER_BYTES - Static variable in class net.imagej.mesh.io.stl.STLMeshIO
 
headers - Variable in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
HeadlessGenericDialog - Class in imagej.patcher
Deprecated.
HeadlessGenericDialog() - Constructor for class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
HeadlessGenericDialog - Class in net.imagej.patcher
Rump implementation of a pseudo dialog intended to stand in for the GenericDialog in headless mode.
HeadlessGenericDialog() - Constructor for class net.imagej.patcher.HeadlessGenericDialog
 
help() - Static method in class net.imagej.matlab.ImageJMATLAB
 
help() - Method in class net.imagej.matlab.ImageJMATLABCommands
 
help(List<OpCandidate>) - Method in class net.imagej.ops.help.AbstractHelp
 
help(Collection<? extends OpInfo>) - Method in class net.imagej.ops.help.AbstractHelp
 
help(Op) - Method in interface net.imagej.ops.OpEnvironment
Executes the "help" operation on the given arguments.
help(Namespace) - Method in interface net.imagej.ops.OpEnvironment
Executes the "help" operation on the given arguments.
help() - Method in interface net.imagej.ops.OpEnvironment
Executes the "help" operation on the given arguments.
help(String) - Method in interface net.imagej.ops.OpEnvironment
Executes the "help" operation on the given arguments.
help(String, Class<? extends Op>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "help" operation on the given arguments.
help(String, Class<? extends Op>, Integer) - Method in interface net.imagej.ops.OpEnvironment
Executes the "help" operation on the given arguments.
help(String, Class<? extends Op>, Integer, SpecialOp.Flavor) - Method in interface net.imagej.ops.OpEnvironment
Executes the "help" operation on the given arguments.
HelpCandidates - Class in net.imagej.ops.help
Gets documentation for ops of the given name and/or type.
HelpCandidates() - Constructor for class net.imagej.ops.help.HelpCandidates
 
helper() - Method in class net.imagej.legacy.ui.AbstractLegacyAdapter
 
helper() - Method in interface net.imagej.legacy.ui.LegacyAdapter
 
HelpForNamespace - Class in net.imagej.ops.help
Gets documentation for the given Namespace.
HelpForNamespace() - Constructor for class net.imagej.ops.help.HelpForNamespace
 
HelpForOp - Class in net.imagej.ops.help
Gets documentation for the given op.
HelpForOp() - Constructor for class net.imagej.ops.help.HelpForOp
 
HelpSearchActionFactory - Class in net.imagej.legacy.search
Search action for getting help on a SciJava module.
HelpSearchActionFactory() - Constructor for class net.imagej.legacy.search.HelpSearchActionFactory
 
hessian(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace
 
HessianRAI<T extends RealType<T>> - Class in net.imagej.ops.filter.hessian
Hessian filter using the sobel filter with separated kernel.
HessianRAI() - Constructor for class net.imagej.ops.filter.hessian.HessianRAI
 
hex - Static variable in class net.imagej.updater.util.UpdaterUtil
 
hexdump(File, File) - Method in class net.imagej.updater.Diff
Make a hex-dump.
hide() - Static method in class net.imagej.launcher.SplashScreen
 
hideCancelButton() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
hideCancelButton() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
HilditchThinningStrategy - Class in net.imagej.ops.morphology.thin
An implementation of the Algorithm proposed by C.
HilditchThinningStrategy() - Constructor for class net.imagej.ops.morphology.thin.HilditchThinningStrategy
 
HilditchThinningStrategy(boolean) - Constructor for class net.imagej.ops.morphology.thin.HilditchThinningStrategy
Create a new hilditch strategy.
histCreator - Variable in class net.imagej.ops.threshold.AbstractApplyThresholdImg
 
histCreator - Variable in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
histogram(Iterable<T>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "histogram" operation on the given arguments.
histogram(Iterable<T>, int) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "histogram" operation on the given arguments.
Histogram1dToHTMLConverter - Class in net.imagej.notebook.chart
Converter from Histogram1d to HTMLObject.
Histogram1dToHTMLConverter() - Constructor for class net.imagej.notebook.chart.Histogram1dToHTMLConverter
 
HistogramBundle - Class in net.imagej.widget
HistogramBundles marry a list of Histogram1ds with addtional rendering information.
HistogramBundle(Histogram1d<?>) - Constructor for class net.imagej.widget.HistogramBundle
 
HistogramBundle(List<Histogram1d<?>>) - Constructor for class net.imagej.widget.HistogramBundle
 
HistogramCreate<T extends RealType<T>> - Class in net.imagej.ops.image.histogram
 
HistogramCreate() - Constructor for class net.imagej.ops.image.histogram.HistogramCreate
 
HistogramOfOrientedGradients2D<T extends RealType<T>> - Class in net.imagej.ops.features.hog
Calculates a histogram of oriented gradients which is a feature descriptor.
HistogramOfOrientedGradients2D() - Constructor for class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
 
HistogramPlot<T extends RealType<T>> - Class in net.imagej.plugins.commands.display
Histogram plotter.
HistogramPlot() - Constructor for class net.imagej.plugins.commands.display.HistogramPlot
 
HistogramWidget<U> - Interface in net.imagej.widget
Widget interface for charts.
history(List<String>) - Method in class net.imagej.updater.CommandLine
 
hog(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.features.hog.HogNamespace
Executes the "hog" operation on the given arguments.
hog(RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.features.hog.HogNamespace
Executes the "hog" operation on the given arguments.
HogNamespace - Class in net.imagej.ops.features.hog
Namespace for Histogram of oriented gradients Features
HogNamespace() - Constructor for class net.imagej.ops.features.hog.HogNamespace
 
Horizon - Class in net.imagej.ops.geom.geom3d.mesh
A Horizon is the result of n neighboring TriangularFacet which are merged.
Horizon(TriangularFacet) - Constructor for class net.imagej.ops.geom.geom3d.mesh.Horizon
Create a new Horizon from a TriangularFacet
horizontalPanel() - Static method in class net.imagej.ui.swing.updater.SwingTools
 
html(RenderedImage) - Static method in class net.imagej.notebook.Images
 
html(RenderedImage, String) - Static method in class net.imagej.notebook.Images
 
HTMLObject - Interface in net.imagej.notebook.mime
An object that knows how to encode itself as an HTML string.
HTTPSUtil - Class in net.imagej.updater.util
 
HTTPSUtil() - Constructor for class net.imagej.updater.util.HTTPSUtil
 
Huang() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Huang
 
huang(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
huang(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
huang(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
huang(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
huang(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
huang(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
huMoment1(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment1(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment2(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment2(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment3(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment3(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment4(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment4(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment5(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment5(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment6(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment6(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment7(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
huMoment7(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
hybrid(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
hybrid(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
hybrid(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<F>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
hybrid(OpEnvironment, Class<? extends Op>, I, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
Hybrids - Class in net.imagej.ops.special.hybrid
Utility class for looking up hybrid ops in a type-safe way.
hyperSliceView(RandomAccessible<T>, int, long) - Method in class net.imagej.ops.transform.TransformNamespace
take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos.
hyperSliceView(RandomAccessibleInterval<T>, int, long) - Method in class net.imagej.ops.transform.TransformNamespace
take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos and preserving interval bounds.

I

ICE - Static variable in class net.imagej.display.ColorTables
 
icm1(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
icm1(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
icm2(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
icm2(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
iconPath() - Method in class net.imagej.ops.search.OpSearchResult
 
icq(Iterable<T>, Iterable<T>, DoubleType, DoubleType) - Method in class net.imagej.ops.coloc.ColocNamespace
 
icq(Iterable<T>, Iterable<T>, DoubleType) - Method in class net.imagej.ops.coloc.ColocNamespace
 
icq(Iterable<T>, Iterable<T>) - Method in class net.imagej.ops.coloc.ColocNamespace
 
identifier() - Method in class net.imagej.ops.search.OpSearchResult
 
identity(A) - Method in interface net.imagej.ops.OpEnvironment
Executes the "identity" operation on the given arguments.
IdentityAxis - Class in net.imagej.axis
IdentityAxis is a CalibratedAxis whose raw and calibrated values are the same.
IdentityAxis() - Constructor for class net.imagej.axis.IdentityAxis
Constructs a default IdentityAxis of unknown axis type.
IdentityAxis(AxisType) - Constructor for class net.imagej.axis.IdentityAxis
Constructs an IdentityAxis of the specified axis type.
IdentityAxis(AxisType, String) - Constructor for class net.imagej.axis.IdentityAxis
Constructs an IdentityAxis of the specified axis type and unit.
IdentityOp<A> - Interface in net.imagej.ops.identity
A typed "identity" function.
If<I extends BooleanType<I>,O extends Type<O>> - Class in net.imagej.ops.logic
An Op that works the same way as the ?: operator.
If() - Constructor for class net.imagej.ops.logic.If
 
ifdm(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
ifdm(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
ifft(RandomAccessibleInterval<T>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "ifft" operation on the given arguments.
ifft(RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.FilterNamespace
 
IFFTMethodsOpC<C extends ComplexType<C>,T extends RealType<T>> - Class in net.imagej.ops.filter.ifft
Inverse FFT computer that operates on an RAI and wraps FFTMethods.
IFFTMethodsOpC() - Constructor for class net.imagej.ops.filter.ifft.IFFTMethodsOpC
 
IFFTMethodsOpI<C extends ComplexType<C>> - Class in net.imagej.ops.filter.ifft
Inverse FFT inplace operator -- complex to complex only, output size must conform to supported FFT size.
IFFTMethodsOpI() - Constructor for class net.imagej.ops.filter.ifft.IFFTMethodsOpI
 
ignoredConflicts - Variable in class net.imagej.updater.FilesCollection
 
ignoreResolution(String, FileObject) - Method in class net.imagej.updater.Conflicts
 
IIAndII() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.IIAndII
 
IIAndIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.IIAndIIParallel
 
IIAndIIToII() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndIIToII
 
IIAndIIToIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndIIToIIParallel
 
IIAndIIToRAI() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAI
 
IIAndIIToRAIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAIParallel
 
IIAndRAI() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAI
 
IIAndRAIParallel() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAIParallel
 
IIAndRAIToII() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToII
 
IIAndRAIToIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToIIParallel
 
IIAndRAIToRAI() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAI
 
IIAndRAIToRAIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAIParallel
 
IIs - Class in net.imagej.ops.special.chain
Utility class for working with IterableIntervals.
IISize<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.size directly.
IISize() - Constructor for class net.imagej.ops.stats.IISize
 
IIToII() - Constructor for class net.imagej.ops.map.MapUnaryComputers.IIToII
 
IIToIIOutputII - Class in net.imagej.ops.logic
Wrapper class for binary logic operations between IterableIntervals and writes result to IterableIntervals.
IIToIIOutputII - Class in net.imagej.ops.math
Wrapper class for binary math operations between IterableIntervals and write result to IterableIntervals.
IIToIIOutputII.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
 
IIToIIOutputII.And<T extends BooleanType<T>> - Class in net.imagej.ops.logic
 
IIToIIOutputII.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
 
IIToIIOutputII.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
 
IIToIIOutputII.Or<T extends BooleanType<T>> - Class in net.imagej.ops.logic
 
IIToIIOutputII.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
 
IIToIIOutputII.Xor<T extends BooleanType<T>> - Class in net.imagej.ops.logic
 
IIToIIParallel() - Constructor for class net.imagej.ops.map.MapUnaryComputers.IIToIIParallel
 
IIToRAI() - Constructor for class net.imagej.ops.map.MapUnaryComputers.IIToRAI
 
IIToRAIOutputII - Class in net.imagej.ops.logic
Wrapper class for binary math operations between IterableIntervals and RandomAccessibleIntervals, and writes the result to IterableIntervals.
IIToRAIOutputII - Class in net.imagej.ops.math
Wrapper class for binary math operations between IterableIntervals and RandomAccessibleIntervals, and writes the result to IterableIntervals.
IIToRAIOutputII.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
 
IIToRAIOutputII.And<T extends NumericType<T>> - Class in net.imagej.ops.logic
 
IIToRAIOutputII.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
 
IIToRAIOutputII.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
 
IIToRAIOutputII.Or<T extends NumericType<T>> - Class in net.imagej.ops.logic
 
IIToRAIOutputII.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
 
IIToRAIOutputII.Xor<T extends NumericType<T>> - Class in net.imagej.ops.logic
 
IIToRAIParallel() - Constructor for class net.imagej.ops.map.MapUnaryComputers.IIToRAIParallel
 
IJ1() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.IJ1
 
ij1(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
ij1(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
ij1(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
ij1(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
ij1(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
ij1(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
IJ1Helper - Class in net.imagej.legacy
A helper class to interact with ImageJ 1.x.
IJ1Helper(LegacyService) - Constructor for class net.imagej.legacy.IJ1Helper
 
ij1Helper() - Method in class net.imagej.legacy.LegacyCommandline
 
IJ1MacroEngine - Class in net.imagej.legacy.plugin
A JSR-223-compliant script engine for the ImageJ 1.x macro language.
IJ1MacroEngine(IJ1Helper) - Constructor for class net.imagej.legacy.plugin.IJ1MacroEngine
Constructs an ImageJ 1.x macro engine.
IJ1MacroLanguage - Class in net.imagej.legacy.plugin
Implements a factory for the ImageJ 1.x Macro language engine.
IJ1MacroLanguage() - Constructor for class net.imagej.legacy.plugin.IJ1MacroLanguage
 
IJBezierTool - Class in net.imagej.ui.swing.overlay
A JHotDraw BezierTool for ImageJ's Swing UI.
IJBezierTool(ImageDisplay, JHotDrawAdapter<BezierFigure>) - Constructor for class net.imagej.ui.swing.overlay.IJBezierTool
 
IJCreationTool<F extends Figure> - Class in net.imagej.ui.swing.overlay
A JHotDraw CreationTool for ImageJ's Swing UI.
IJCreationTool(ImageDisplay, JHotDrawAdapter<F>) - Constructor for class net.imagej.ui.swing.overlay.IJCreationTool
 
IJDelegationSelectionTool - Class in net.imagej.ui.swing.overlay
A JHotDraw DelegationSelectionTool for ImageJ's Swing UI.
IJDelegationSelectionTool() - Constructor for class net.imagej.ui.swing.overlay.IJDelegationSelectionTool
 
IJLineToLineConverter - Class in net.imagej.legacy.convert.roi.line
Converts an ImageJ 1.x Line to an ImgLib2 Line.
IJLineToLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
 
IJLineToLineOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.IJLineToLineOMEROConverter
 
IJLineWrapper - Class in net.imagej.legacy.convert.roi.line
Wraps an ImageJ 1.x Line as an ImgLib2 Line.
IJLineWrapper(int, int, int, int) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper
Creates a new ImageJ 1.x Line with endpoints at the specified integer coordinates, and then wraps this as an ImgLib2 Line.
IJLineWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper
Creates a new ImageJ 1.x Line with endpoints at the specified real coordinates, and then wraps this as an ImgLib2 Line.
IJLineWrapper(Line) - Constructor for class net.imagej.legacy.convert.roi.line.IJLineWrapper
Wraps the given ImageJ 1.x Line as an ImgLib2 Line.
IJLineWrapperToLineData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IJLineWrapperToLineData
 
IJO_VERSION_DESC - Static variable in class net.imagej.omero.roi.ROIConverters
Description value of imagej-omero version tags
IJPath() - Constructor for class net.imagej.legacy.LegacyCommandline.IJPath
 
IJRealRoiWrapper<R extends Roi> - Interface in net.imagej.legacy.convert.roi
Wraps ImageJ 1.x Rois as ImgLib2 RealMaskRealInterval
ijRoiPoint(double, double) - Static method in class net.imagej.legacy.convert.roi.Rois
Creates a new IJRoiPoint
IJROIToMaskPredicateWrappers - Class in net.imagej.omero.legacy.convert
Converters for converting Roi to MaskPredicate.
IJROIToMaskPredicateWrappers.IJLineToLineOMEROConverter - Class in net.imagej.omero.legacy.convert
Converts a Line to Line
IJROIToMaskPredicateWrappers.OvalRoiToEllipsoidOMEROConverter - Class in net.imagej.omero.legacy.convert
IJROIToMaskPredicateWrappers.PointRoiToRealPointCollectionOMEROConverter - Class in net.imagej.omero.legacy.convert
IJROIToMaskPredicateWrappers.PolygonRoiToPolygon2DOMEROConverter - Class in net.imagej.omero.legacy.convert
Converts a PolygonRoi to Polygon2D
IJROIToMaskPredicateWrappers.PolylineRoiToPolylineOMEROConverter - Class in net.imagej.omero.legacy.convert
Converts a PolygonRoi to Polyline
IJROIToMaskPredicateWrappers.PolylineRoiToRealMaskRealIntervalOMEROConverter - Class in net.imagej.omero.legacy.convert
IJROIToMaskPredicateWrappers.RoiToBoxOMEROConverter - Class in net.imagej.omero.legacy.convert
Converts a Roi to Box.
IJROIToMaskPredicateWrappers.RoiToMaskIntervalOMEROConverter - Class in net.imagej.omero.legacy.convert
Converts a Roi to MaskInterval
IJROIToMaskPredicateWrappers.ShapeRoiToMaskRealIntervalOMEROConverter - Class in net.imagej.omero.legacy.convert
IJROIToMaskPredicateWrappers.TextRoiToTextRoiWrapperOMEROConverter - Class in net.imagej.omero.legacy.convert
Converts a TextRoi to TextRoiWrapper
IJROIToOverlay - Class in net.imagej.omero.legacy.convert
Converts a Roi to a Overlay.
IJROIToOverlay() - Constructor for class net.imagej.omero.legacy.convert.IJROIToOverlay
 
IJROIToROITree - Class in net.imagej.omero.legacy.convert
Converts a Roi to a ROITree.
IJROIToROITree() - Constructor for class net.imagej.omero.legacy.convert.IJROIToROITree
 
IJRoiWrapper<R extends Roi,L> - Interface in net.imagej.legacy.convert.roi
Wraps an ImageJ 1.x Roi as a MaskPredicate.
IJRoiWrapperToShapeData - Class in net.imagej.omero.legacy.convert
Converters which convert IJRoiWrappers to ShapeData, and preserve corresponding settings not represent in MaskPredicate.
IJRoiWrapperToShapeData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData
 
IJRoiWrapperToShapeData.AbstractIJRoiWrapperToShapeData<I extends IJRoiWrapper<?,?>,S extends ShapeData> - Class in net.imagej.omero.legacy.convert
Abstract base class for converting IJRoiWrapper to ShapeData
IJRoiWrapperToShapeData.DefaultRoiWrapperToMaskData - Class in net.imagej.omero.legacy.convert
Converts DefaultRoiWrapper to MaskData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.IJLineWrapperToLineData - Class in net.imagej.omero.legacy.convert
Converts IJLineWrapper to LineData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData - Class in net.imagej.omero.legacy.convert
Converts IrregularPolylineRoiWrapper to MaskData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData - Class in net.imagej.omero.legacy.convert
Converts OvalRoiWrapper to EllipseData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData - Class in net.imagej.omero.legacy.convert
Converts PolygonRoiWrapper to PolygonData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData - Class in net.imagej.omero.legacy.convert
Converts PolylineRoiWrapper to PolylineData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.RoiWrapperToRectangleData - Class in net.imagej.omero.legacy.convert
Converts RoiWrapper to RectangleData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData - Class in net.imagej.omero.legacy.convert
Converts ShapeRoiWrapper to MaskData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.TextRoiWrapperToTextData - Class in net.imagej.omero.legacy.convert
Converts TextRoiWrapper to TextData, and preserves settings not represented in MaskPredicate.
IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData - Class in net.imagej.omero.legacy.convert
Converts UnmodifiablePolylineRoiWrapper to PolylineData, and preserves settings not represented in MaskPredicate.
imag - Variable in class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
image() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "image" namespace.
ImageCalculator<U extends RealType<U>,V extends RealType<V>> - Class in net.imagej.plugins.commands.calculator
Fills an output Dataset with a combination of two input Datasets.
ImageCalculator() - Constructor for class net.imagej.plugins.commands.calculator.ImageCalculator
 
ImageCanvas - Interface in net.imagej.display
A canvas upon which an ImageDisplay draws its output.
ImageDisplay - Interface in net.imagej.display
An image display is a Display for visualizing Data objects.
imageDisplay() - Method in class net.imagej.ImageJ
Gets this application context's ImageDisplayService.
ImageDisplayEvent - Class in net.imagej.display.event
An event indicating something has happened to an ImageDisplay.
ImageDisplayEvent(ImageDisplay) - Constructor for class net.imagej.display.event.ImageDisplayEvent
 
ImageDisplayPanel - Interface in net.imagej.ui.viewer.image
This is a panel that can go inside a display window.
imageDisplayService - Variable in class net.imagej.command.InteractiveImageCommand
 
ImageDisplayService - Interface in net.imagej.display
Interface for services that work with ImageDisplays.
ImageDisplayToImagePlusConverter - Class in net.imagej.legacy.convert
Converter implementation for converting ImageDisplay to an ImagePlus.
ImageDisplayToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
ImageDisplayViewer - Interface in net.imagej.ui.viewer.image
A display viewer for DataViews.
ImageGrabber - Class in net.imagej
An ImageGrabber creates a merged color Dataset from a DatasetView.
ImageGrabber(DatasetService) - Constructor for class net.imagej.ImageGrabber
Constructs an ImageGrabber for a given (@link DatasetService}.
imagej - package imagej
 
ImageJ - Class in net.imagej
Main entry point into ImageJ2.
ImageJ() - Constructor for class net.imagej.ImageJ
Creates a new application context with all ImageJ2, SCIFIO and SciJava services.
ImageJ(Context) - Constructor for class net.imagej.ImageJ
Creates a new application context which wraps the given existing SciJava context.
imagej.patcher - package imagej.patcher
 
ImageJ2Options - Class in net.imagej.legacy
Allows the setting and persisting of options relevant to ImageJ2, in ImageJ1.
ImageJ2Options() - Constructor for class net.imagej.legacy.ImageJ2Options
 
ImageJApp - Class in net.imagej.app
Application metadata about ImageJ2.
ImageJApp() - Constructor for class net.imagej.app.ImageJApp
 
ImageJMATLAB - Class in net.imagej.matlab
Utility class for properly starting up ImageJ from within MATLAB.
ImageJMATLAB() - Constructor for class net.imagej.matlab.ImageJMATLAB
 
ImageJMATLABCommands - Class in net.imagej.matlab
MATLABCommands suite for converting ImageJ data structures to MATLAB structures.
ImageJMATLABCommands() - Constructor for class net.imagej.matlab.ImageJMATLABCommands
 
ImageJMATLABPrefService - Class in net.imagej.matlab
A PrefService implementation specific for use within MATLAB.
ImageJMATLABPrefService() - Constructor for class net.imagej.matlab.ImageJMATLABPrefService
 
ImageJMATLABService - Interface in net.imagej.matlab
Service for performing utility operations with net.imagej data structures in a MATLAB context.
ImageJPlugin - Interface in net.imagej
Top-level interface for ImageJ2 plugins.
imagejRoot - Variable in class net.imagej.updater.util.Class2JarFilesMap
 
ImageJServer - Class in net.imagej.server
Entry point to imagej-server.
ImageJServer(Context) - Constructor for class net.imagej.server.ImageJServer
 
ImageJServerConfiguration - Class in net.imagej.server
Configuration instance for imagej-server by parsing imagej-server.yml
ImageJServerConfiguration() - Constructor for class net.imagej.server.ImageJServerConfiguration
 
ImageJServerHealthCheck - Class in net.imagej.server.health
 
ImageJServerHealthCheck() - Constructor for class net.imagej.server.health.ImageJServerHealthCheck
 
ImageJServerService - Interface in net.imagej.server
Service for ImageJ Server operations.
ImageJService - Interface in net.imagej
Marker interface for all ImageJ2 Services.
ImageJToOMEROEllipse - Class in net.imagej.omero.roi.ellipse
Converts an Ellipsoid to an OMERO EllipseData.
ImageJToOMEROEllipse() - Constructor for class net.imagej.omero.roi.ellipse.ImageJToOMEROEllipse
 
ImageJToOMEROLine - Class in net.imagej.omero.roi.line
Converts a Line to an OMERO LineData.
ImageJToOMEROLine() - Constructor for class net.imagej.omero.roi.line.ImageJToOMEROLine
 
ImageJToOMEROPoint - Class in net.imagej.omero.roi.point
Converts a PointMask to an OMERO PointData.
ImageJToOMEROPoint() - Constructor for class net.imagej.omero.roi.point.ImageJToOMEROPoint
 
ImageJToOMEROPolygon - Class in net.imagej.omero.roi.polyshape
Converts a Polygon2D to an OMERO PolygonData.
ImageJToOMEROPolygon() - Constructor for class net.imagej.omero.roi.polyshape.ImageJToOMEROPolygon
 
ImageJToOMEROPolyline - Class in net.imagej.omero.roi.polyshape
Converts a Polyline to an OMERO PolylineData.
ImageJToOMEROPolyline() - Constructor for class net.imagej.omero.roi.polyshape.ImageJToOMEROPolyline
 
ImageJToOMERORectangle - Class in net.imagej.omero.roi.rectangle
Converts an Box to an OMERO RectangleData.
ImageJToOMERORectangle() - Constructor for class net.imagej.omero.roi.rectangle.ImageJToOMERORectangle
 
ImageJUIService - Interface in net.imagej.ui
Interface for service that manage ImageJ user interfaces.
ImageJUpdater - Class in net.imagej.ui.swing.updater
The Updater.
ImageJUpdater() - Constructor for class net.imagej.ui.swing.updater.ImageJUpdater
 
ImageJWebsite - Class in net.imagej.plugins.commands.app
Open the ImageJ web site in a browser.
ImageJWebsite() - Constructor for class net.imagej.plugins.commands.app.ImageJWebsite
 
ImageMetadata - Interface in net.imagej
Metadata relating to channels and intensity scales.
ImageMomentOp<I,O> - Interface in net.imagej.ops.imagemoments
marker interface for image moment ops.
imagemoments() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "imagemoments" namespace.
ImageMomentsNamespace - Class in net.imagej.ops.imagemoments
The image moments namespace contains ops related to image moments.
ImageMomentsNamespace() - Constructor for class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
ImageNamespace - Class in net.imagej.ops.image
The image namespace contains operations relating to images.
ImageNamespace() - Constructor for class net.imagej.ops.image.ImageNamespace
 
ImagePlusCreator - Class in net.imagej.legacy.translate
Creates ImagePluses from ImageDisplay.
ImagePlusCreator(Context) - Constructor for class net.imagej.legacy.translate.ImagePlusCreator
 
ImagePlusCreatorUtils - Class in net.imagej.legacy.translate
Utility class for ImagePlusCreator.
ImagePlusDisplay - Interface in net.imagej.legacy.display
Marker interface for Display implementations that will be displaying ImagePluses.
ImagePlusDisplayViewer - Class in net.imagej.legacy.display
DisplayViewer implementation for ImagePlus.
ImagePlusDisplayViewer() - Constructor for class net.imagej.legacy.display.ImagePlusDisplayViewer
 
ImagePlusToDatasetConverter - Class in net.imagej.legacy.convert
Converter implementation for converting ImagePlus to a Dataset.
ImagePlusToDatasetConverter() - Constructor for class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
ImagePlusToImageDisplayConverter - Class in net.imagej.legacy.convert
Converter implementation for converting ImagePlus to a ImageDisplay.
ImagePlusToImageDisplayConverter() - Constructor for class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
Images - Class in net.imagej.notebook
Utility methods for adapting image data structures.
Images - Class in net.imagej.util
Useful methods for working with images.
ImageTitle(ImagePlus) - Constructor for class net.imagej.legacy.convert.ImageTitleToImagePlusConverter.ImageTitle
 
ImageTitle(ImagePlus) - Constructor for class net.imagej.legacy.convert.StringToImagePlusConverter.ImageTitle
 
ImageTitleToImagePlusConverter - Class in net.imagej.legacy.convert
Converts an image title to the corresponding ImagePlus object.
ImageTitleToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.ImageTitleToImagePlusConverter
 
ImageTitleToImagePlusConverter.ImageTitle - Class in net.imagej.legacy.convert
Adapter for ImagePlus that emits the image title when ImageTitleToImagePlusConverter.ImageTitle.toString() is called.
ImageTranslator - Class in net.imagej.legacy.translate
ImageTranslator(LegacyService) - Constructor for class net.imagej.legacy.translate.ImageTranslator
 
imageType(IterableInterval<O>, IterableInterval<I>, RealTypeConverter<I, O>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
img(Img<T>) - Method in class net.imagej.ops.copy.CopyNamespace
 
img(Img<T>, Img<T>) - Method in class net.imagej.ops.copy.CopyNamespace
 
img(ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyNamespace
 
img(ArrayImg<T, A>, ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyNamespace
 
img(Integer[]) - Method in class net.imagej.ops.create.CreateNamespace
Creates an Img of type DoubleType with the given dimensions.
img(Long[]) - Method in class net.imagej.ops.create.CreateNamespace
Creates an Img of type DoubleType with the given dimensions.
img(int[]) - Method in class net.imagej.ops.create.CreateNamespace
Creates an Img of type DoubleType with the given dimensions.
img(long[]) - Method in class net.imagej.ops.create.CreateNamespace
Creates an Img of type DoubleType with the given dimensions.
img(Dimensions, T) - Method in class net.imagej.ops.create.CreateNamespace
 
img(Dimensions, T, ImgFactory<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
img(IterableInterval<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
img(Img<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
img(Interval) - Method in class net.imagej.ops.create.CreateNamespace
 
img(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
img() - Method in class net.imagej.table.DefaultResultsTable
 
img() - Method in interface net.imagej.table.ResultsTable
Wraps the results table in an ImgLib Img.
imgByte(Tensor<UInt8>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type ByteType containing the data of a TensorFlow Tensor with the data type DataType.UINT8.
imgByte(Tensor<UInt8>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type ByteType containing the data of a TensorFlow Tensor with the data type DataType.UINT8.
imgByteDirect(Tensor<UInt8>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type ByteType containing the data of a TensorFlow Tensor with the data type DataType.UINT8.
imgCreator - Variable in class net.imagej.ops.threshold.AbstractApplyThresholdImg
 
imgDouble(Tensor<Double>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type DoubleType containing the data of a TensorFlow Tensor with the data type DataType.DOUBLE.
imgDouble(Tensor<Double>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type DoubleType containing the data of a TensorFlow Tensor with the data type DataType.DOUBLE.
imgDoubleDirect(Tensor<Double>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type DoubleType containing the data of a TensorFlow Tensor with the data type DataType.DOUBLE.
imgFactory(S) - Method in class net.imagej.DatasetImgFactory
 
imgFactory() - Method in class net.imagej.ops.create.CreateNamespace
 
imgFactory(Dimensions) - Method in class net.imagej.ops.create.CreateNamespace
 
imgFactory(Img<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
imgFloat(Tensor<Float>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type FloatType containing the data of a TensorFlow Tensor with the data type DataType.FLOAT.
imgFloat(Tensor<Float>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type FloatType containing the data of a TensorFlow Tensor with the data type DataType.FLOAT.
imgFloatDirect(Tensor<Float>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type FloatType containing the data of a TensorFlow Tensor with the data type DataType.FLOAT.
ImgImgFactory<T extends Type<T>,V extends Type<V>> - Class in net.imagej.ops.bufferfactories
UnaryOutputFactory used to create an empty output Img of type <V> and the dimensionality of the input Img
ImgImgFactory(V) - Constructor for class net.imagej.ops.bufferfactories.ImgImgFactory
 
ImgImgSameTypeFactory<T extends Type<T>> - Class in net.imagej.ops.bufferfactories
UnaryOutputFactory used to create an empty output Img of same type and dimensionality as the input Img.
ImgImgSameTypeFactory() - Constructor for class net.imagej.ops.bufferfactories.ImgImgSameTypeFactory
 
imgInt(Tensor<Integer>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type IntType containing the data of a TensorFlow Tensor with the data type DataType.INT32.
imgInt(Tensor<Integer>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type IntType containing the data of a TensorFlow Tensor with the data type DataType.INT32.
imgIntDirect(Tensor<Integer>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type IntType containing the data of a TensorFlow Tensor with the data type DataType.INT32.
imgLabeling(ImgLabeling<L, I>) - Method in class net.imagej.ops.copy.CopyNamespace
 
imgLabeling(ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.copy.CopyNamespace
 
imgLabeling(Dimensions) - Method in class net.imagej.ops.create.CreateNamespace
 
imgLabeling(Dimensions, T) - Method in class net.imagej.ops.create.CreateNamespace
 
imgLabeling(Dimensions, T, ImgFactory<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
imgLabeling(Dimensions, T, ImgFactory<T>, int) - Method in class net.imagej.ops.create.CreateNamespace
 
imgLabeling(Interval) - Method in class net.imagej.ops.create.CreateNamespace
 
imgLabeling(Interval, T) - Method in class net.imagej.ops.create.CreateNamespace
 
imgLabeling(Interval, T, ImgFactory<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
imgLabeling(Interval, T, ImgFactory<T>, int) - Method in class net.imagej.ops.create.CreateNamespace
 
ImgLabelingToImgConverter<T extends IntegerType<T>> - Class in net.imagej.convert
This Converter converts an ImgLabeling to an Img.
ImgLabelingToImgConverter() - Constructor for class net.imagej.convert.ImgLabelingToImgConverter
 
ImgLibDataTransform - Class in net.imagej.plugins.commands.imglib
Runs an ImgLib OutputAlgorithm, assigning the created image to the input Dataset.
ImgLibDataTransform(Dataset, OutputAlgorithm<Img<? extends RealType<?>>>) - Constructor for class net.imagej.plugins.commands.imglib.ImgLibDataTransform
 
imgLong(Tensor<Long>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type LongType containing the data of a TensorFlow Tensor with the data type DataType.INT64.
imgLong(Tensor<Long>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type LongType containing the data of a TensorFlow Tensor with the data type DataType.INT64.
imgLongDirect(Tensor<Long>) - Static method in class net.imagej.tensorflow.Tensors
Creates an image of type LongType containing the data of a TensorFlow Tensor with the data type DataType.INT64.
ImgPlus<T> - Class in net.imagej
A simple container for storing an Img together with its metadata.
ImgPlus(Img<T>) - Constructor for class net.imagej.ImgPlus
 
ImgPlus(Img<T>, String) - Constructor for class net.imagej.ImgPlus
 
ImgPlus(Img<T>, String, AxisType[]) - Constructor for class net.imagej.ImgPlus
 
ImgPlus(Img<T>, ImgPlusMetadata) - Constructor for class net.imagej.ImgPlus
 
ImgPlus(Img<T>, ImgPlusMetadata, boolean) - Constructor for class net.imagej.ImgPlus
As ImgPlus(Img, ImgPlusMetadata) but with a flag to determine if metadata beyond axis information is copied.
ImgPlus(Img<T>, String, AxisType[], double[]) - Constructor for class net.imagej.ImgPlus
 
ImgPlus(Img<T>, String, AxisType[], double[], String[]) - Constructor for class net.imagej.ImgPlus
 
ImgPlus(Img<T>, String, CalibratedAxis...) - Constructor for class net.imagej.ImgPlus
 
imgPlus(Img<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
imgPlus(Img<T>, ImgPlusMetadata) - Method in class net.imagej.ops.create.CreateNamespace
 
ImgPlusMetadata - Interface in net.imagej
An interface which collects all metadata associated with an ImgPlus.
ImgPlusService - Interface in net.imagej
ImgPlusService is an ImageJService that allows one to cast weakly typed ImgPluses to more strongly typed versions.
Imgs - Class in net.imagej.ops.create.img
Utility methods for working with Img objects.
ImgToImgLabelingConverter<T extends IntegerType<T>> - Class in net.imagej.convert
This Converter converts an Img to an ImgLabeling.
ImgToImgLabelingConverter() - Constructor for class net.imagej.convert.ImgToImgLabelingConverter
 
IMP_KEY - Static variable in class net.imagej.legacy.LegacyImageMap
Key for storing ImagePlus instances in a Dataset's map.
in() - Method in interface net.imagej.ops.special.BinaryInput
 
in() - Method in class net.imagej.ops.special.computer.AbstractUnaryComputerOp
 
in() - Method in class net.imagej.ops.special.function.AbstractUnaryFunctionOp
 
in() - Method in class net.imagej.ops.special.hybrid.AbstractUnaryHybridC
 
in() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op
 
in() - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp
 
in() - Method in interface net.imagej.ops.special.UnaryInput
 
in - Variable in class net.imagej.updater.util.InputStream2OutputStream
 
in1() - Method in interface net.imagej.ops.special.BinaryInput
 
in1() - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp
 
in1() - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp
 
in1() - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
 
in1() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op
 
in2() - Method in interface net.imagej.ops.special.BinaryInput
 
in2() - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp
 
in2() - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp
 
in2() - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
 
in2() - Method in class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op
 
inc() - Method in class net.imagej.types.PreciseFixedFloatType
 
inc() - Method in class net.imagej.types.UnboundedIntegerType
 
incrementCounter() - Method in class net.imagej.legacy.convert.TableWrapper
 
incrementReferences() - Method in class net.imagej.AbstractData
 
incrementReferences() - Method in interface net.imagej.Data
Adds to the data object's reference count.
indented - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
index() - Method in interface net.imagej.mesh.Triangle
Index into the mesh's list of triangles.
index() - Method in interface net.imagej.mesh.Vertex
Index into the mesh's list of vertices.
indexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
indexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
indexOf(Object) - Method in class net.imagej.legacy.convert.TableListWrapper
 
indexOf(Object) - Method in class net.imagej.omero.LazyTableList
 
indexOf(int[], int) - Method in class net.imagej.ui.swing.updater.FileTable
 
indices() - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
info(Class<? extends Op>) - Method in class net.imagej.ops.CustomOpEnvironment
 
info(Class<? extends Op>) - Method in class net.imagej.ops.DefaultOpService
 
info(Class<? extends Op>) - Method in interface net.imagej.ops.OpEnvironment
Gets the metadata for a given Op class.
info(Op) - Method in interface net.imagej.ops.OpEnvironment
Gets the metadata for a given Op.
info() - Method in class net.imagej.ops.search.OpSearchResult
 
info(String) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
info(String, String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
info(String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
info(String, String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
info(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
info(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
infos() - Method in class net.imagej.ops.CustomOpEnvironment
 
infos() - Method in class net.imagej.ops.DefaultOpService
 
infos() - Method in interface net.imagej.ops.OpEnvironment
The available ops for the context, including those of the parent.
inHeader - Variable in class net.imagej.ui.swing.updater.DiffView
 
init() - Method in class net.imagej.lut.LUTSelector
 
init() - Method in class net.imagej.plugins.commands.debug.MandelbrotSetImage
 
init() - Method in class net.imagej.plugins.commands.imglib.Binner
 
init() - Method in class net.imagej.plugins.commands.imglib.ResizeImage
 
init() - Method in class net.imagej.plugins.commands.imglib.ResliceImage
 
init() - Method in class net.imagej.plugins.commands.imglib.TranslateImage
 
init() - Method in class net.imagej.plugins.commands.io.NewImage
 
init() - Method in class net.imagej.plugins.commands.typechange.TypeChanger
 
init() - Method in class net.imagej.plugins.tools.FloodFillToolConfig
 
init() - Method in class net.imagej.plugins.tools.PaintBrushToolConfig
 
init() - Method in class net.imagej.plugins.tools.PencilToolConfig
 
initAll() - Method in class net.imagej.plugins.commands.restructure.AddAxis
 
initAll() - Method in class net.imagej.plugins.commands.restructure.AddData
 
initAll() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
 
initAll() - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
initAll() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
initAll() - Method in class net.imagej.plugins.tools.SprayCanToolConfig
 
initAxes() - Method in class net.imagej.plugins.commands.restructure.FlipAxis
 
initAxes() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
 
initAxes() - Method in class net.imagej.plugins.commands.restructure.ReorderData
 
initAxisName() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
Initializes axisName value.
initAxisName() - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis
 
initBackAndForth() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
Initializes backAndForth value.
initBundle() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
initColorTables(Dataset) - Static method in class net.imagej.legacy.translate.DatasetUtils
Allocates the color table array within a new planar Dataset (one table per plane).
initDefaultSettings(F) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
initFields() - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
initFirst() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
Initializes first value.
initFPS() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
Initializes fps value.
Initializable - Interface in net.imagej.ops
Interface for objects which can be initialized.
InitializablePreprocessor() - Constructor for class net.imagej.server.resources.ModulesResource.InitializablePreprocessor
 
initialize() - Method in class net.imagej.animation.DefaultAnimationService
 
initialize() - Method in class net.imagej.DefaultDatasetService
 
initialize() - Method in class net.imagej.DefaultImgPlusService
 
initialize(Data) - Method in class net.imagej.display.AbstractDataView
 
initialize(Data) - Method in interface net.imagej.display.DataView
Initializes the view with the given Data.
initialize() - Method in class net.imagej.display.DefaultImageDisplayService
 
initialize() - Method in class net.imagej.display.DefaultWindowService
 
initialize() - Method in class net.imagej.legacy.IJ1Helper
 
initialize() - Method in class net.imagej.legacy.LegacyService
 
initialize() - Method in class net.imagej.lut.DefaultLUTService
 
initialize(Img<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
initialize(IterableInterval<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
initialize(RandomAccessibleInterval<T>, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
initialize(Img<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
initialize(IterableInterval<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
initialize(RandomAccessibleInterval<T>) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
initialize(Img<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod
Sets the provided Img as the target interval for computation, as well as initial min and max values.
initialize(IterableInterval<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod
Sets the target interval for computation, as well as initial min and max values.
initialize(RandomAccessibleInterval<T>, T, T) - Method in interface net.imagej.minmax.MinMaxMethod
Sets the target interval for computation, as well as initial min and max values.
initialize(Img<T>) - Method in interface net.imagej.minmax.MinMaxMethod
Sets the provided Img as the target interval for computation.
initialize(IterableInterval<T>) - Method in interface net.imagej.minmax.MinMaxMethod
Sets the target interval for computation.
initialize(RandomAccessibleInterval<T>) - Method in interface net.imagej.minmax.MinMaxMethod
Sets the target interval for computation.
initialize() - Method in class net.imagej.notebook.DefaultNotebookService
 
initialize() - Method in class net.imagej.ops.convert.imageType.ConvertIIs
 
initialize() - Method in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
 
initialize() - Method in class net.imagej.ops.copy.CopyII
 
initialize() - Method in class net.imagej.ops.copy.CopyImg
 
initialize() - Method in class net.imagej.ops.copy.CopyImgLabeling
 
initialize() - Method in class net.imagej.ops.copy.CopyLabelingMapping
 
initialize() - Method in class net.imagej.ops.copy.CopyRAI
 
initialize() - Method in class net.imagej.ops.create.img.CreateImgFromDimsAndType
 
initialize() - Method in class net.imagej.ops.create.imgLabeling.CreateImgLabelingFromInterval
 
initialize() - Method in class net.imagej.ops.create.imgLabeling.DefaultCreateImgLabeling
 
initialize() - Method in class net.imagej.ops.create.kernel.CreateKernel2D
 
initialize() - Method in class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernel2ndDerivBiGauss
 
initialize() - Method in class net.imagej.ops.create.kernelBiGauss.DefaultCreateKernelBiGauss
 
initialize() - Method in class net.imagej.ops.create.kernelDiffraction.DefaultCreateKernelGibsonLanni
 
initialize() - Method in class net.imagej.ops.create.kernelGabor.CreateKernelGaborIsotropic
 
initialize() - Method in class net.imagej.ops.create.kernelGabor.DefaultCreateKernelGabor
 
initialize() - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetric
 
initialize() - Method in class net.imagej.ops.create.kernelGauss.DefaultCreateKernelGauss
 
initialize() - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetric
 
initialize() - Method in class net.imagej.ops.create.kernelLog.DefaultCreateKernelLog
 
initialize() - Method in class net.imagej.ops.create.kernelSobel.CreateKernelSobel
 
initialize() - Method in class net.imagej.ops.create.labelingMapping.DefaultCreateLabelingMapping
 
initialize() - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
initialize(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
initialize() - Method in class net.imagej.ops.deconvolve.NonCirculantFirstGuess
 
initialize() - Method in class net.imagej.ops.deconvolve.NonCirculantNormalizationFactor
 
initialize() - Method in class net.imagej.ops.deconvolve.PadAndRichardsonLucy
 
initialize() - Method in class net.imagej.ops.deconvolve.RichardsonLucyC
 
initialize() - Method in class net.imagej.ops.deconvolve.RichardsonLucyCorrection
 
initialize() - Method in class net.imagej.ops.deconvolve.RichardsonLucyUpdate
 
initialize() - Method in class net.imagej.ops.eval.DefaultEval
 
initialize() - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultClusterPromenence
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultClusterShade
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultContrast
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultCorrelation
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultDifferenceEntropy
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultDifferenceVariance
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultICM1
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultICM2
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultSumAverage
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultSumEntropy
 
initialize() - Method in class net.imagej.ops.features.haralick.DefaultSumVariance
 
initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocHXY
 
initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocMeanX
 
initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocMeanY
 
initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocStdX
 
initialize() - Method in class net.imagej.ops.features.haralick.helper.CoocStdY
 
initialize() - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
 
initialize() - Method in class net.imagej.ops.features.lbp2d.DefaultLBP2D
 
initialize() - Method in class net.imagej.ops.features.tamura2d.DefaultContrastFeature
 
initialize() - Method in class net.imagej.ops.features.tamura2d.DefaultDirectionalityFeature
 
initialize() - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
 
initialize() - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
 
initialize() - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
 
initialize() - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
 
initialize() - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
 
initialize() - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF
 
initialize() - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFT
 
initialize() - Method in class net.imagej.ops.filter.convolve.PadAndConvolveFFTF
 
initialize() - Method in class net.imagej.ops.filter.correlate.CorrelateFFTC
 
initialize() - Method in class net.imagej.ops.filter.correlate.PadAndCorrelateFFT
 
initialize() - Method in class net.imagej.ops.filter.derivative.PartialDerivativeRAI
 
initialize() - Method in class net.imagej.ops.filter.derivative.PartialDerivativesRAI
 
initialize() - Method in class net.imagej.ops.filter.dog.DoGSingleSigmas
 
initialize() - Method in class net.imagej.ops.filter.fft.CreateOutputFFTMethods
 
initialize() - Method in class net.imagej.ops.filter.fft.FFTMethodsOpF
 
initialize() - Method in class net.imagej.ops.filter.FFTMethodsLinearFFTFilterC
 
initialize() - Method in class net.imagej.ops.filter.gauss.GaussRAISingleSigma
 
initialize() - Method in class net.imagej.ops.filter.hessian.HessianRAI
 
initialize() - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpC
 
initialize() - Method in class net.imagej.ops.filter.pad.DefaultPadInputFFT
 
initialize() - Method in class net.imagej.ops.filter.pad.DefaultPadShiftKernelFFT
 
initialize() - Method in class net.imagej.ops.filter.pad.PadInput
 
initialize() - Method in class net.imagej.ops.filter.pad.PadInputFFT
 
initialize() - Method in class net.imagej.ops.filter.pad.PadInputFFTMethods
 
initialize() - Method in class net.imagej.ops.filter.pad.PadShiftKernel
 
initialize() - Method in class net.imagej.ops.filter.pad.PadShiftKernelFFTMethods
 
initialize() - Method in class net.imagej.ops.filter.sobel.SobelRAI
 
initialize() - Method in class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
 
initialize() - Method in class net.imagej.ops.geom.AbstractBoxivity
 
initialize() - Method in class net.imagej.ops.geom.AbstractConvexity
 
initialize() - Method in class net.imagej.ops.geom.AbstractSizeConvexHull
 
initialize() - Method in class net.imagej.ops.geom.AbstractSolidity
 
initialize() - Method in class net.imagej.ops.geom.CentroidMesh
 
initialize() - Method in class net.imagej.ops.geom.CentroidPolygon
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultCircularity
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultEccentricity
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultElongation
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMajorAxis
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeret
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeret
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultMinorAxis
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultRoundness
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
 
initialize() - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon
 
initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultCompactness
 
initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
 
initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
 
initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
 
initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
 
initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
 
initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultSphericity
 
initialize() - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh
 
initialize() - Method in class net.imagej.ops.image.ascii.DefaultASCII
 
initialize() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
 
initialize() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
 
initialize() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
 
initialize() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
 
initialize() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
 
initialize() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
 
initialize() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
 
initialize() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
 
initialize() - Method in class net.imagej.ops.image.equation.DefaultXYEquation
 
initialize() - Method in class net.imagej.ops.image.fill.DefaultFill
 
initialize() - Method in class net.imagej.ops.image.histogram.HistogramCreate
 
initialize() - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
 
initialize() - Method in class net.imagej.ops.image.normalize.NormalizeIIComputer
 
initialize() - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction
 
initialize() - Method in class net.imagej.ops.image.watershed.Watershed
 
initialize() - Method in class net.imagej.ops.image.watershed.WatershedBinary
 
initialize() - Method in class net.imagej.ops.image.watershed.WatershedBinarySingleSigma
 
initialize() - Method in class net.imagej.ops.image.watershed.WatershedSeeded
 
initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment00
 
initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment02
 
initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment03
 
initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment11
 
initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment12
 
initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment20
 
initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment21
 
initialize() - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment30
 
initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment1
 
initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment2
 
initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment3
 
initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment4
 
initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment5
 
initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment6
 
initialize() - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment7
 
initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment02
 
initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment03
 
initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment11
 
initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment12
 
initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment20
 
initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment21
 
initialize() - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment30
 
initialize() - Method in interface net.imagej.ops.Initializable
Initializes the object.
initialize() - Method in class net.imagej.ops.labeling.cca.DefaultCCA
 
initialize() - Method in class net.imagej.ops.labeling.MergeLabeling
 
initialize() - Method in class net.imagej.ops.logic.IIToIIOutputII.And
 
initialize() - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
 
initialize() - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
 
initialize() - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
 
initialize() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
 
initialize() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
 
initialize() - Method in class net.imagej.ops.map.neighborhood.DefaultMapNeighborhood
 
initialize() - Method in class net.imagej.ops.map.neighborhood.MapNeighborhoodWithCenter
 
initialize() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
 
initialize() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
initialize() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
initialize() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
initialize() - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
initialize() - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
initialize() - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
initialize() - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
initialize() - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
 
initialize() - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
 
initialize() - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
initialize() - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
initialize() - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
 
initialize() - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
 
initialize() - Method in class net.imagej.ops.morphology.close.ListClose
 
initialize() - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
 
initialize() - Method in class net.imagej.ops.morphology.dilate.ListDilate
 
initialize() - Method in class net.imagej.ops.morphology.erode.DefaultErode
 
initialize() - Method in class net.imagej.ops.morphology.erode.ListErode
 
initialize() - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesComputer
 
initialize() - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesFunction
 
initialize() - Method in class net.imagej.ops.morphology.fillHoles.DefaultFillHoles
 
initialize() - Method in class net.imagej.ops.morphology.floodFill.DefaultFloodFill
 
initialize() - Method in class net.imagej.ops.morphology.open.ListOpen
 
initialize() - Method in class net.imagej.ops.morphology.thin.ThinGuoHall
 
initialize() - Method in class net.imagej.ops.morphology.thin.ThinHilditch
 
initialize() - Method in class net.imagej.ops.morphology.thin.ThinMorphological
 
initialize() - Method in class net.imagej.ops.morphology.thin.ThinZhangSuen
 
initialize() - Method in class net.imagej.ops.morphology.topHat.ListTopHat
 
initialize() - Method in class net.imagej.ops.slice.SliceRAI2RAI
 
initialize() - Method in class net.imagej.ops.special.chain.BCViaBC
 
initialize() - Method in class net.imagej.ops.special.chain.BFViaBC
 
initialize() - Method in class net.imagej.ops.special.chain.BFViaBF
 
initialize() - Method in class net.imagej.ops.special.chain.BHCFViaBC
 
initialize() - Method in class net.imagej.ops.special.chain.BHCFViaBHCF
 
initialize() - Method in class net.imagej.ops.special.chain.BIOViaBI
 
initialize() - Method in class net.imagej.ops.special.chain.UCViaUC
 
initialize() - Method in class net.imagej.ops.special.chain.UFViaUC
 
initialize() - Method in class net.imagej.ops.special.chain.UFViaUF
 
initialize() - Method in class net.imagej.ops.special.chain.UHCFViaUC
 
initialize() - Method in class net.imagej.ops.special.chain.UHCFViaUHCF
 
initialize() - Method in class net.imagej.ops.special.chain.UIOViaUI
 
initialize() - Method in class net.imagej.ops.stats.DefaultGeometricMean
 
initialize() - Method in class net.imagej.ops.stats.DefaultHarmonicMean
 
initialize() - Method in class net.imagej.ops.stats.DefaultKurtosis
 
initialize() - Method in class net.imagej.ops.stats.DefaultMean
 
initialize() - Method in class net.imagej.ops.stats.DefaultMoment1AboutMean
 
initialize() - Method in class net.imagej.ops.stats.DefaultMoment2AboutMean
 
initialize() - Method in class net.imagej.ops.stats.DefaultMoment3AboutMean
 
initialize() - Method in class net.imagej.ops.stats.DefaultMoment4AboutMean
 
initialize() - Method in class net.imagej.ops.stats.DefaultPercentile
 
initialize() - Method in class net.imagej.ops.stats.DefaultSkewness
 
initialize() - Method in class net.imagej.ops.stats.DefaultStandardDeviation
 
initialize() - Method in class net.imagej.ops.stats.DefaultVariance
 
initialize() - Method in class net.imagej.ops.threshold.AbstractApplyThresholdImg
 
initialize() - Method in class net.imagej.ops.threshold.apply.ApplyConstantThreshold
 
initialize() - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Huang
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.IJ1
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Intermodes
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.IsoData
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Li
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MaxEntropy
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MaxLikelihood
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Mean
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.MinError
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Minimum
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Moments
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Otsu
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Percentile
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.RenyiEntropy
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Rosin
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Shanbhag
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Triangle
 
initialize() - Method in class net.imagej.ops.threshold.ApplyThresholdMethod.Yen
 
initialize() - Method in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
initialize() - Method in class net.imagej.ops.transform.crop.CropImgPlus
 
initialize() - Method in class net.imagej.render.DummyRenderingService
 
initialize(Bootstrap<ImageJServerConfiguration>) - Method in class net.imagej.server.ImageJServer
 
initialize(Context) - Method in class net.imagej.server.resources.ModulesResource
Initialize resource by injection.
initialize(Context) - Method in class net.imagej.server.resources.ObjectsResource
Initialize resource by injection.
initialize() - Method in class net.imagej.types.DefaultDataTypeService
 
initializeAndAddSites(FilesCollection, Logger) - Static method in class net.imagej.updater.util.AvailableSites
As AvailableSites.initializeAndAddSites(FilesCollection) with an optional Logger for reporting errors.
initializeAndAddSites(FilesCollection, LogService) - Static method in class net.imagej.updater.util.AvailableSites
 
initializeAndAddSites(FilesCollection) - Static method in class net.imagej.updater.util.AvailableSites
Initializes the list of update sites, and adds them to the given FilesCollection.
initializeCheck() - Method in class net.imagej.minmax.AbstractMinMaxMethod
Throws an exception if this MinMaxMethod has not been initialized.
initializeColorTables(int) - Method in class net.imagej.DefaultDataset
 
initializeColorTables(int) - Method in interface net.imagej.ImageMetadata
Sets the number of available color tables to the given value.
initializeColorTables(int) - Method in class net.imagej.ImgPlus
 
initialized() - Method in class imagej.patcher.EssentialLegacyHooks
Deprecated.
 
initialized() - Method in class imagej.patcher.LegacyHooks
Deprecated.
First extension point to run just after ImageJ 1.x spun up.
initialized - Variable in class net.imagej.minmax.AbstractMinMaxMethod
 
initialized() - Method in class net.imagej.patcher.EssentialLegacyHooks
 
initialized() - Method in class net.imagej.patcher.LegacyHooks
First extension point to run just after ImageJ 1.x spun up.
initializeNeighborhood(long[]) - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher
Called once each time a neighborhood is visited for the first time to allow implementer to initialize local neighborhood state.
initializeQueue() - Method in class net.imagej.updater.Checksummer
 
initializer() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
 
initializeUpdateSite(String, String, String, String) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
initializeUpdateSite(String, String, String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
initialUpload(String, String, String) - Static method in class net.imagej.updater.FilesUploader
Deprecated.
initialUploader(UploaderService, String, String, String, Progress) - Static method in class net.imagej.updater.FilesUploader
 
initLast() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
Initializes last value.
initName() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
 
initPosition() - Method in class net.imagej.plugins.commands.axispos.SetAxisPosition
 
initType() - Method in class net.imagej.plugins.commands.io.NewImage
 
initValues() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
initValues() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
injectHooks(ClassLoader) - Method in class imagej.patcher.LegacyInjector
Deprecated.
Overrides class behavior of ImageJ1 classes by injecting method hooks.
injectHooks(ClassLoader, boolean) - Method in class imagej.patcher.LegacyInjector
Deprecated.
Overrides class behavior of ImageJ1 classes by injecting method hooks.
injectHooks(ClassLoader) - Method in class net.imagej.patcher.LegacyInjector
Overrides class behavior of ImageJ1 classes by injecting method hooks.
injectHooks(ClassLoader, boolean) - Method in class net.imagej.patcher.LegacyInjector
Overrides class behavior of ImageJ1 classes by injecting method hooks.
inMin - Variable in class net.imagej.ops.convert.scale.ScaleRealTypes
 
inplace(Iterable<O>, UnaryInplaceOp<I, O>) - Static method in class net.imagej.ops.map.Maps
 
inplace(IterableInterval<O>, UnaryInplaceOp<I, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
inplace(IterableInterval<O>, IterableInterval<I2>, BinaryInplace1Op<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
inplace(IterableInterval<O>, RandomAccessibleInterval<I2>, BinaryInplace1Op<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
inplace(RandomAccessibleInterval<A>, IterableInterval<I>, BinaryInplace1Op<A, I, A>) - Static method in class net.imagej.ops.map.Maps
 
inplace(IterableInterval<A>, IterableInterval<I>, BinaryInplace1Op<A, I, A>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
inplace(IterableInterval<A>, RandomAccessibleInterval<I>, BinaryInplace1Op<A, I, A>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
inplace(RandomAccessibleInterval<A>, IterableInterval<I>, BinaryInplace1Op<A, I, A>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
inplace(IterableInterval<A>, IterableInterval<A>, BinaryInplaceOp<A, A>) - Static method in class net.imagej.ops.map.Maps
 
inplace(IterableInterval<A>, IterableInterval<A>, BinaryInplaceOp<A, A>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
inplace(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
inplace(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
inplace(OpEnvironment, Class<? extends Op>, A, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
Inplaces - Class in net.imagej.ops.special.inplace
Utility class for looking up inplace ops in a type-safe way.
InplaceUnaryTransform<I extends ComplexType<I>,O extends ComplexType<O>> - Class in net.imagej.plugins.commands.assign
Helper class for use by many plugins that apply a ComplexUnaryOperation to some input image.
InplaceUnaryTransform(ComplexUnaryOperation<O, O>, O, Dataset, Overlay) - Constructor for class net.imagej.plugins.commands.assign.InplaceUnaryTransform
All planes version
InplaceUnaryTransform(ComplexUnaryOperation<O, O>, O, Dataset, Overlay, Position) - Constructor for class net.imagej.plugins.commands.assign.InplaceUnaryTransform
Single plane versions
input - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
inputData() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets the reference input data.
inputMask() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets the preexisting mask (if any).
inputs() - Method in class net.imagej.ops.OpCandidate
Gets the op's input parameters.
inputs() - Method in class net.imagej.ops.OpInfo
Gets the op's input parameters.
inputs(ModuleInfo) - Static method in class net.imagej.ops.OpUtils
Gets the given ModuleInfo's list of inputs, excluding special ones like Services and Contexts.
inputs() - Method in class net.imagej.server.mixins.Mixins.ModuleInfoMixIn
 
inputs() - Method in class net.imagej.server.WebCommandInfo
 
InputStream2OutputStream - Class in net.imagej.updater.util
Copies an InputStream into an OutputStream.
InputStream2OutputStream(InputStream, OutputStream) - Constructor for class net.imagej.updater.util.InputStream2OutputStream
 
insertColumn(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
insertColumn(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
insertColumns(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
insertColumns(int, String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
insertRow(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
insertRow(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
insertRows(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
insertRows(int, String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
INSIDE - Static variable in class net.imagej.plugins.commands.binary.Binarize
 
InspectImg - Class in net.imagej.plugins.commands.debug
TODO
InspectImg() - Constructor for class net.imagej.plugins.commands.debug.InspectImg
 
install(RSyntaxTextArea) - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin
 
install() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
installed() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Runs when the hooks are installed into an existing legacy environment.
installed() - Method in class net.imagej.legacy.DefaultLegacyHooks
 
installed() - Method in class net.imagej.patcher.LegacyHooks
Runs when the hooks are installed into an existing legacy environment.
installed() - Method in class net.imagej.updater.FilesCollection
 
Installer - Class in net.imagej.updater
A class that updates local files from all available update sites.
Installer(FilesCollection, Progress) - Constructor for class net.imagej.updater.Installer
 
installHooks(ClassLoader, LegacyHooks) - Static method in class imagej.patcher.LegacyInjector
Deprecated.
 
installHooks(ClassLoader, LegacyHooks) - Static method in class net.imagej.patcher.LegacyInjector
 
InstallOrUpdate - Class in net.imagej.updater.action
The update action.
InstallOrUpdate() - Constructor for class net.imagej.updater.action.InstallOrUpdate
 
installUploader(String, FilesCollection, Progress) - Method in class net.imagej.updater.DefaultUploaderService
 
installUploader(String, FilesCollection, Progress) - Method in interface net.imagej.updater.UploaderService
TODO.
instanceOf(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
Int16() - Constructor for class net.imagej.ops.convert.ConvertImages.Int16
 
int16(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int16(Img<ShortType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int16(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int16(ShortType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int16(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int16(ShortType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int16(long) - Static method in class net.imagej.ops.convert.Types
 
int16(double) - Static method in class net.imagej.ops.convert.Types
 
int16(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
int16(boolean) - Static method in class net.imagej.ops.convert.Types
 
Int32() - Constructor for class net.imagej.ops.convert.ConvertImages.Int32
 
int32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int32(Img<IntType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int32(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int32(IntType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int32(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int32(IntType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int32(long) - Static method in class net.imagej.ops.convert.Types
 
int32(double) - Static method in class net.imagej.ops.convert.Types
 
int32(Number) - Static method in class net.imagej.ops.convert.Types
 
int32(boolean) - Static method in class net.imagej.ops.convert.Types
 
Int64() - Constructor for class net.imagej.ops.convert.ConvertImages.Int64
 
int64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int64(Img<LongType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int64(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int64(LongType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int64(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int64(LongType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int64(long) - Static method in class net.imagej.ops.convert.Types
 
int64(double) - Static method in class net.imagej.ops.convert.Types
 
int64(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
int64(boolean) - Static method in class net.imagej.ops.convert.Types
 
Int8() - Constructor for class net.imagej.ops.convert.ConvertImages.Int8
 
int8(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int8(Img<ByteType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int8(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int8(ByteType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int8(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int8(ByteType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
int8(long) - Static method in class net.imagej.ops.convert.Types
 
int8(double) - Static method in class net.imagej.ops.convert.Types
 
int8(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
int8(boolean) - Static method in class net.imagej.ops.convert.Types
 
IntArraySorter - Class in net.imagej.ops.coloc
Sorts and int[] according to a custom comparator.
IntArraySorter() - Constructor for class net.imagej.ops.coloc.IntArraySorter
 
IntComparator - Interface in net.imagej.ops.coloc
 
integer(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
 
integer(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService
Given an ImgPlus of unknown type this returns a typed ImgPlus of type IntegerType.
IntegerAbs() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerAbs
 
IntegerAdd() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerAdd
 
IntegerAnd() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerAnd
 
IntegerComplement() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerComplement
 
IntegerDivide() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerDivide
 
IntegerEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerEqual
 
IntegerGreaterThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerGreaterThan
 
IntegerGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerGreaterThanOrEqual
 
IntegerLeftShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerLeftShift
 
IntegerLessThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerLessThan
 
IntegerLessThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerLessThanOrEqual
 
IntegerMax() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerMax
 
IntegerMin() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerMin
 
IntegerMultiply() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerMultiply
 
IntegerNegate() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerNegate
 
IntegerNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.IntegerNotEqual
 
IntegerOr() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerOr
 
IntegerRemainder() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerRemainder
 
IntegerRightShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerRightShift
 
IntegerSubtract() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerSubtract
 
IntegerToBit() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToBit
 
IntegerToInt16() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToInt16
 
IntegerToInt32() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToInt32
 
IntegerToInt64() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToInt64
 
IntegerToInt8() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToInt8
 
IntegerToIntTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverters.IntegerToIntTypeConverter
 
IntegerToUint12() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint12
 
IntegerToUint128() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint128
 
IntegerToUint16() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint16
 
IntegerToUint2() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint2
 
IntegerToUint32() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint32
 
IntegerToUint4() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint4
 
IntegerToUint64() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint64
 
IntegerToUint8() - Constructor for class net.imagej.ops.convert.ConvertTypes.IntegerToUint8
 
integerType() - Method in class net.imagej.ops.create.CreateNamespace
 
integerType(long) - Method in class net.imagej.ops.create.CreateNamespace
 
IntegerTypeMixIn() - Constructor for class net.imagej.server.mixins.Mixins.IntegerTypeMixIn
 
IntegerUnsignedRightShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerUnsignedRightShift
 
IntegerXor() - Constructor for class net.imagej.ops.math.PrimitiveMath.IntegerXor
 
integral(RandomAccessibleInterval<RealType>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
 
integral(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
 
IntegralCursor<T> - Class in net.imagej.ops.image.integral
A cursor implementation that returns specific corner values of RectangleNeighborhoods.
IntegralCursor(RectangleNeighborhood<T>) - Constructor for class net.imagej.ops.image.integral.IntegralCursor
 
IntegralCursor(IntegralCursor<T>) - Constructor for class net.imagej.ops.image.integral.IntegralCursor
 
IntegralMean<I extends RealType<I>> - Class in net.imagej.ops.stats
Op to calculate the stats.mean from an integral image using a specialized Cursor implementation.
IntegralMean() - Constructor for class net.imagej.ops.stats.IntegralMean
 
integralMean(DoubleType, RectangleNeighborhood) - Method in class net.imagej.ops.stats.StatsNamespace
 
IntegralSum<I extends RealType<I>> - Class in net.imagej.ops.stats
Op to calculate the stats.sum from an integral image using a specialized Cursor implementation.
IntegralSum() - Constructor for class net.imagej.ops.stats.IntegralSum
 
integralSum(RectangleNeighborhood) - Method in class net.imagej.ops.stats.StatsNamespace
 
integralSum(DoubleType, RectangleNeighborhood) - Method in class net.imagej.ops.stats.StatsNamespace
 
IntegralVariance<I extends RealType<I>> - Class in net.imagej.ops.stats
Op to calculate the stats.variance from an integral image using a specialized Cursor implementation.
IntegralVariance() - Constructor for class net.imagej.ops.stats.IntegralVariance
 
integralVariance(DoubleType, RectangleNeighborhood) - Method in class net.imagej.ops.stats.StatsNamespace
 
InteractiveImageCommand - Class in net.imagej.command
An extension of InteractiveCommand which supports syncing DatasetView and Dataset inputs in addition to only Displays.
InteractiveImageCommand(String...) - Constructor for class net.imagej.command.InteractiveImageCommand
Creates a new interactive image command.
intercept(double, double, double, double) - Static method in class net.imagej.axis.DefaultLinearAxis
Returns the y intercept of the line connecting two points.
interceptCloseAllWindows() - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptCloseAllWindows() - Method in class net.imagej.patcher.LegacyHooks
Allows closing additional windows at the end of WindowManager.closeAllWindows().
interceptDragAndDropFile(File) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptDragAndDropFile(File) - Method in class net.imagej.patcher.LegacyHooks
Optionally override opening drag-and-dropped files via legacy hooks.
interceptFileOpen(String) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptFileOpen(String) - Method in class net.imagej.patcher.LegacyHooks
Optionally override opening resources via legacy hooks.
interceptImageWindowClose(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptImageWindowClose(Object) - Method in class net.imagej.patcher.LegacyHooks
Hook to ensure ImageWindows are fully cleaned up when they are closed.
interceptKeyPressed(KeyEvent) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptKeyPressed(KeyEvent) - Method in class net.imagej.patcher.LegacyHooks
Intercepts keyboard events sent to ImageJ 1.x.
interceptOpen(String, int, boolean) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Optionally override opening resources via legacy hooks.
interceptOpen(String, int, boolean) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptOpen(String, int, boolean) - Method in class net.imagej.patcher.LegacyHooks
Deprecated.
this will be removed before ij1-patcher 1.0.0
interceptOpenImage(String, int) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptOpenImage(String, int) - Method in class net.imagej.patcher.LegacyHooks
Optionally override opening images via legacy hooks.
interceptOpenRecent(String) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptOpenRecent(String) - Method in class net.imagej.patcher.LegacyHooks
Optionally override opening recent images via legacy hooks.
interceptRunPlugIn(String, String) - Method in class imagej.patcher.EssentialLegacyHooks
Deprecated.
Intercepts LegacyInitializer's Context creation.
interceptRunPlugIn(String, String) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Intercepts the call to IJ.runPlugIn(String, String).
interceptRunPlugIn(String, String) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
interceptRunPlugIn(String, String) - Method in class net.imagej.patcher.EssentialLegacyHooks
Intercepts LegacyInitializer's Context creation.
interceptRunPlugIn(String, String) - Method in class net.imagej.patcher.LegacyHooks
Intercepts the call to IJ.runPlugIn(String, String).
Interface(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Interface
 
Intermodes() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Intermodes
 
intermodes(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
intermodes(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
intermodes(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
intermodes(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
intermodes(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
intermodes(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
interpolateView(I, InterpolatorFactory<T, I>) - Method in class net.imagej.ops.transform.TransformNamespace
Returns a RealRandomAccessible using interpolation
intersect(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
IntervalHyperSliceView<T> - Class in net.imagej.ops.transform.hyperSliceView
IntervalHyperSliceView() - Constructor for class net.imagej.ops.transform.hyperSliceView.IntervalHyperSliceView
 
IntervalInvertAxisView<T> - Class in net.imagej.ops.transform.invertAxisView
Wraps the Views.invertAxis(RandomAccessible, int) method while preserving interval bounds.
IntervalInvertAxisView() - Constructor for class net.imagej.ops.transform.invertAxisView.IntervalInvertAxisView
 
IntervalPermuteView<T> - Class in net.imagej.ops.transform.permuteView
Wraps the Views.permute(RandomAccessible, int, int) method while preserving interval bounds.
IntervalPermuteView() - Constructor for class net.imagej.ops.transform.permuteView.IntervalPermuteView
 
IntervalRotateView<T> - Class in net.imagej.ops.transform.rotateView
IntervalRotateView() - Constructor for class net.imagej.ops.transform.rotateView.IntervalRotateView
 
IntervalSubsampleView<T> - Class in net.imagej.ops.transform.subsampleView
Wraps the Views.subsample(RandomAccessible, long) method while preserving interval bounds.
IntervalSubsampleView() - Constructor for class net.imagej.ops.transform.subsampleView.IntervalSubsampleView
 
IntervalTranslateView<T> - Class in net.imagej.ops.transform.translateView
Wraps the Views.translate(RandomAccessible, long[]) method while preserving interval bounds.
IntervalTranslateView() - Constructor for class net.imagej.ops.transform.translateView.IntervalTranslateView
 
intervalView(RandomAccessible<T>, Interval) - Method in class net.imagej.ops.transform.TransformNamespace
Define an interval on a RandomAccessible.
intervalView(RandomAccessible<T>, long[], long...) - Method in class net.imagej.ops.transform.TransformNamespace
Define an interval on a RandomAccessible.
IntervalViewMinMax<T> - Class in net.imagej.ops.transform.intervalView
IntervalViewMinMax() - Constructor for class net.imagej.ops.transform.intervalView.IntervalViewMinMax
 
IntTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.IntTableToResultsTable
 
invalidate() - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
invalidNumber - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
invalidNumber() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
invalidNumber - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
invalidNumber() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
InverseRodbardAxis - Class in net.imagej.axis
InverseRodbardAxis is a CalibratedAxis that scales raw values by the equation y = a*((x-b)/(c-x))^(1/d).
InverseRodbardAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.InverseRodbardAxis
 
invert(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "invert" operation on the given arguments.
invert(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "invert" operation on the given arguments, given a RealType minimum.
invert(IterableInterval<T>, IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "invert" operation on the given arguments, given a RealType minimum.
invert(O, I, double, double) - Method in class net.imagej.ops.math.MathNamespace
 
Invert() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Invert
 
invertAxisView(RandomAccessible<T>, int) - Method in class net.imagej.ops.transform.TransformNamespace
Invert the d-axis.
invertAxisView(RandomAccessibleInterval<T>, int) - Method in class net.imagej.ops.transform.TransformNamespace
Invert the d-axis while preserving interval bounds.
InvertDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by applying an inversion to an input Dataset's data values.
InvertDataValues() - Constructor for class net.imagej.plugins.commands.assign.InvertDataValues
 
InvertII<T extends RealType<T>> - Class in net.imagej.ops.image.invert
 
InvertII() - Constructor for class net.imagej.ops.image.invert.InvertII
 
InvertIIInteger<T extends IntegerType<T>> - Class in net.imagej.ops.image.invert
 
InvertIIInteger() - Constructor for class net.imagej.ops.image.invert.InvertIIInteger
 
invoke(String) - Method in class net.imagej.omero.ScriptRunner
Invokes the given ImageJ module identifier as an OMERO script.
invoke(ModuleInfo) - Method in class net.imagej.omero.ScriptRunner
Invokes the given ImageJ module as an OMERO script.
invokeOnEDT(Runnable) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
IrregularPolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline
Wraps a PolygonRoi of type Roi.POLYLINE or Roi.FREELINE with a non zero width as a RealMaskRealInterval.
IrregularPolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper
Creates a RealMaskRealInterval which wraps the given Roi.
IrregularPolylineRoiWrapperToMaskData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.IrregularPolylineRoiWrapperToMaskData
 
is(FileObject.Action) - Method in class net.imagej.updater.FilesCollection
 
is(FileObject.Status) - Method in class net.imagej.updater.FilesCollection
 
isActive() - Method in class net.imagej.animation.Animation
Returns true if the animation is currently running.
isActive() - Method in class net.imagej.legacy.LegacyService
Gets whether this LegacyService is fully operational, linked to the ImageJ 1.x singleton instance.
isActive() - Static method in class net.imagej.patcher.PerformanceProfiler
Reports whether profiling is in progress
isActive() - Method in class net.imagej.updater.UpdateSite
 
isActiveInAppFrame() - Method in class net.imagej.plugins.tools.AcceleratorHandler
 
isActiveInAppFrame() - Method in class net.imagej.plugins.tools.AxisPositionHandler
 
isActiveInAppFrame() - Method in class net.imagej.plugins.tools.ZoomHandler
 
isAddToRoiMgr() - Method in class net.imagej.options.OptionsPointTool
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.AbsDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.EquationDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.ExpDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.InvertDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.LogDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.SquareDataValues
 
isAllPlanes() - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues
 
isAlwaysActive() - Method in class net.imagej.plugins.tools.AcceleratorHandler
 
isAlwaysActive() - Method in class net.imagej.plugins.tools.AxisPositionHandler
 
isAlwaysActive() - Method in class net.imagej.plugins.tools.ContextMenuHandler
 
isAlwaysActive() - Method in class net.imagej.plugins.tools.FocusHandler
 
isAlwaysActive() - Method in class net.imagej.plugins.tools.KonamiHandler
 
isAlwaysActive() - Method in class net.imagej.plugins.tools.PanActivator
 
isAlwaysActive() - Method in class net.imagej.plugins.tools.PixelProbe
 
isAlwaysActive() - Method in class net.imagej.plugins.tools.ZoomHandler
 
isAntialiasedToolIcons() - Method in class net.imagej.options.OptionsAppearance
 
isApproved() - Method in class net.imagej.updater.URLChange
 
isArrowDoubleHeaded() - Method in class net.imagej.options.OptionsArrowTool
 
isArrowOutline() - Method in class net.imagej.options.OptionsArrowTool
 
isAutoClose() - Method in class net.imagej.options.OptionsProfilePlot
 
isAutoMeasure() - Method in class net.imagej.options.OptionsPointTool
 
isAutoNextSlice() - Method in class net.imagej.options.OptionsPointTool
 
isBackAndForth() - Method in class net.imagej.animation.Animation
 
isBackAndForth() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
isBatchMode() - Method in class net.imagej.legacy.LegacyCommandline
 
isBatchMode() - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
isBatchMode() - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
isBatchMode() - Method in class net.imagej.updater.util.UpdaterUserInterface
 
isBatchMode() - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
isBlackCanvas() - Method in class net.imagej.options.OptionsAppearance
 
isBoolType(RandomAccessible<?>) - Static method in class net.imagej.roi.MaskConversionUtil
 
isBoolType(RealRandomAccessible<?>) - Static method in class net.imagej.roi.MaskConversionUtil
 
isBoolType(Type) - Static method in class net.imagej.roi.MaskConversionUtil
 
isBounded() - Method in interface net.imagej.types.DataType
Returns true if DataType is fully bounded (bounded below and bounded above).
isBounded() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
isBounded() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
isBounded() - Method in class net.imagej.types.DataType16BitSignedInteger
 
isBounded() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
isBounded() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
isBounded() - Method in class net.imagej.types.DataType32BitSignedFloat
 
isBounded() - Method in class net.imagej.types.DataType32BitSignedInteger
 
isBounded() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
isBounded() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
isBounded() - Method in class net.imagej.types.DataType64BitSignedFloat
 
isBounded() - Method in class net.imagej.types.DataType64BitSignedInteger
 
isBounded() - Method in class net.imagej.types.DataType8BitSignedInteger
 
isBounded() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
isBounded() - Method in class net.imagej.types.DataTypeBoolean
 
isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
isBounded() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
isCanceled() - Method in class net.imagej.ops.filter.tubeness.DefaultTubeness
 
isCanceled() - Method in class net.imagej.ops.thread.chunker.AbstractChunker
 
isCanceled() - Method in class net.imagej.ops.thread.chunker.ChunkerInterleaved
 
isCanceled() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
isCanceled() - Method in class net.imagej.plugins.commands.debug.PointSetDemo
 
isCandidate(String) - Method in class net.imagej.updater.Checksummer
 
isCapitalized(String) - Static method in class net.imagej.util.MediaWikiClient
 
isCellEditable(int, int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
isCentered() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
isClearAll() - Method in class net.imagej.app.Preferences
 
isClosed() - Method in class net.imagej.tensorflow.CachedModelBundle
 
isCompatible(Data) - Method in interface net.imagej.display.DataView
Gets whether this view is compatible with the given Data.
isCompatible(Data) - Method in class net.imagej.display.DefaultDatasetView
 
isCompatible(Data) - Method in class net.imagej.display.DefaultOverlayView
 
isCompatible(UserInterface) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer
 
isCompatible(UserInterface) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
 
isCompatible(int) - Method in interface net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation
 
isCompatible(int) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D
 
isCompatible(int) - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D
 
isCompatible(UserInterface) - Method in class net.imagej.ui.swing.mdi.viewer.SwingMdiImageDisplayViewer
 
isCompatible(UserInterface) - Method in class net.imagej.ui.swing.sdi.viewer.SwingSdiImageDisplayViewer
 
isComplex() - Method in interface net.imagej.types.DataType
Returns true if this DataType is a complex number (imaginary component is changeable).
isComplex() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
isComplex() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
isComplex() - Method in class net.imagej.types.DataType16BitSignedInteger
 
isComplex() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
isComplex() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
isComplex() - Method in class net.imagej.types.DataType32BitSignedFloat
 
isComplex() - Method in class net.imagej.types.DataType32BitSignedInteger
 
isComplex() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
isComplex() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
isComplex() - Method in class net.imagej.types.DataType64BitSignedFloat
 
isComplex() - Method in class net.imagej.types.DataType64BitSignedInteger
 
isComplex() - Method in class net.imagej.types.DataType8BitSignedInteger
 
isComplex() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
isComplex() - Method in class net.imagej.types.DataTypeBoolean
 
isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
isComplex() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
isConstructing() - Method in class net.imagej.ui.swing.overlay.IJBezierTool
 
isConstructing() - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
isConstructing() - Method in class net.imagej.ui.swing.overlay.IJDelegationSelectionTool
 
isConstructing() - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
 
isCopyColumnHeaders() - Method in class net.imagej.options.OptionsInputOutput
 
isCopyRowNumbers() - Method in class net.imagej.options.OptionsInputOutput
 
isCrashed() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus
 
isCritical() - Method in class net.imagej.updater.Conflicts.Conflict
 
isDebian() - Static method in class net.imagej.ui.swing.updater.ImageJUpdater
This returns true if this seems to be the Debian packaged version of ImageJ, or false otherwise.
isDebugMode() - Method in class net.imagej.options.OptionsMisc
 
isDefaultBehavior() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
Returns true if current behavior is default.
isDeveloper() - Static method in class net.imagej.updater.UpToDate
 
isDirty() - Method in interface net.imagej.Dataset
TODO
isDirty() - Method in class net.imagej.DefaultDataset
 
isDisplayFractionalScales() - Method in class net.imagej.options.OptionsAppearance
 
isDisplaying(Object) - Method in class net.imagej.display.DefaultImageDisplay
 
isDisposing() - Method in class net.imagej.legacy.IJ1Helper
Whether we are in the process of forcibly shutting down ImageJ1.
isDoubleOutput() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Returns true if image calculation will return a double backed Img as output.
isDrawGridLines() - Method in class net.imagej.options.OptionsProfilePlot
 
isDropBoxURL(URL) - Static method in class net.imagej.updater.util.DropboxURLMapper
 
isEmpty() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
isEmpty() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
isEmpty() - Method in class net.imagej.legacy.convert.TableListWrapper
 
isEmpty() - Method in class net.imagej.omero.LazyTableList
 
isEncrypted() - Method in class net.imagej.omero.OMEROLocation
 
isError() - Method in class net.imagej.updater.Conflicts.Conflict
 
isExitWhenQuitting() - Method in class net.imagej.options.OptionsMisc
 
isFailed() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus
 
isFloat() - Method in interface net.imagej.types.DataType
Returns true if this DataType represents a floating point number.
isFloat() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
isFloat() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
isFloat() - Method in class net.imagej.types.DataType16BitSignedInteger
 
isFloat() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
isFloat() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
isFloat() - Method in class net.imagej.types.DataType32BitSignedFloat
 
isFloat() - Method in class net.imagej.types.DataType32BitSignedInteger
 
isFloat() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
isFloat() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
isFloat() - Method in class net.imagej.types.DataType64BitSignedFloat
 
isFloat() - Method in class net.imagej.types.DataType64BitSignedInteger
 
isFloat() - Method in class net.imagej.types.DataType8BitSignedInteger
 
isFloat() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
isFloat() - Method in class net.imagej.types.DataTypeBoolean
 
isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
isFloat() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
isFontSmooth() - Method in class net.imagej.options.OptionsFont
 
isFormat(String, SCIFIOConfig) - Method in class net.imagej.omero.OMEROFormat.Checker
 
isForPlatform(String) - Method in class net.imagej.updater.FileObject
 
isForThisPlatform(FilesCollection) - Method in class net.imagej.updater.FileObject
 
isFullZoomImages() - Method in class net.imagej.options.OptionsAppearance
 
isGenerateDebugInfo() - Method in class net.imagej.options.OptionsCompiler
 
isGrayColorTable(ColorTable) - Static method in class net.imagej.display.ColorTables
Tests whether a ColorTable consists of gray values.
isHideProcessStackDialog() - Method in class net.imagej.options.OptionsMisc
 
isImageJ1Initialized(ClassLoader) - Static method in class net.imagej.patcher.LegacyEnvironment
Determines whether there is already an ImageJ 1.x instance.
isImageJ1VersionAtLeast(CodeHacker, String) - Static method in class net.imagej.patcher.LegacyInjector
 
isImagePlus(Object) - Method in class net.imagej.legacy.IJ1Helper
Returns true if the object is an instance of ImagePlus.
isImagePlus(Class<?>) - Method in class net.imagej.legacy.IJ1Helper
Returns true if the class is assignable to ImagePlus.
isInImage(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
isInImage(IntCoords) - Method in interface net.imagej.display.ImageCanvas
Tests whether a given point in the panel falls within the boundaries of the display space.
isInitialized() - Method in class net.imagej.legacy.LegacyService
Returns true if this LegacyService has been initialized already and false if not.
isInstallable() - Method in class net.imagej.updater.FileObject
 
isInteger() - Method in interface net.imagej.Dataset
TODO
isInteger() - Method in class net.imagej.DefaultDataset
 
isInterpLineProf() - Method in class net.imagej.options.OptionsProfilePlot
 
isInterpZoomedImages() - Method in class net.imagej.options.OptionsAppearance
 
isInvertModeLegacy() - Method in class net.imagej.options.OptionsCompatibility
 
isInvertModeModern() - Method in class net.imagej.options.OptionsCompatibility
 
isLabelPoints() - Method in class net.imagej.options.OptionsPointTool
 
isLastModified(long) - Method in class net.imagej.updater.UpdateSite
 
isLauncher(String) - Method in class net.imagej.updater.util.UpdaterUtil
 
isLegacyMode() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Determines whether the image windows should be displayed or not.
isLegacyMode() - Method in class net.imagej.legacy.DefaultLegacyHooks
 
isLegacyMode() - Method in class net.imagej.legacy.LegacyService
States whether we're running in legacy ImageJ 1.x mode.
isLegacyMode() - Method in class net.imagej.patcher.LegacyHooks
Determines whether the image windows should be displayed or not.
isListValues() - Method in class net.imagej.options.OptionsProfilePlot
 
isLoaded() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus
 
isLocal(URL) - Static method in class net.imagej.updater.Diff
Determine whether a URL refers to a local file.
isLocallyModified() - Method in class net.imagej.updater.FileObject
 
isLocalOnly() - Method in class net.imagej.updater.FileObject
 
isLossy() - Method in class net.imagej.legacy.convert.roi.AbstractMaskPredicateToRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.BinaryCompositeMaskPredicateToShapeRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.box.BoxToRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidToOvalRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter
 
isLossy() - Method in class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
isLUT(File) - Method in class net.imagej.lut.DefaultLUTService
 
isLUT(File) - Method in interface net.imagej.lut.LUTService
Gets whether the given file can be parsed as a color table by LUTService.loadLUT(File).
isMacintosh() - Method in class net.imagej.legacy.IJ1Helper
 
isMacOSX() - Method in class net.imagej.updater.util.UpdaterUtil
 
isMacro() - Method in class net.imagej.legacy.IJ1Helper
Determines whether we're running inside a macro right now.
isMetaDataOnly() - Method in class net.imagej.event.DatasetUpdatedEvent
 
isMouseoverEnabled() - Method in class net.imagej.legacy.search.SearchOptions
 
isMoveIsolatedPlugins() - Method in class net.imagej.options.OptionsMisc
 
isMultipleBuffers() - Method in class net.imagej.options.OptionsMemoryAndThreads
Returns true if ImageJ will maintain multiple undo buffers.
isNamed() - Method in class net.imagej.ops.OpInfo
Gets whether the op has a name.
isNamespace(String) - Method in class net.imagej.ops.OpInfo
Gets whether the op belongs to the given namespace.
isNewerThan(long) - Method in class net.imagej.updater.FileObject
 
isNewWindow() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Returns true if image calculation with create a new image window.
isNoAction() - Method in class net.imagej.updater.FilesCollection
 
isNoImageBorder() - Method in class net.imagej.options.OptionsAppearance
 
isNoSaveXValues() - Method in class net.imagej.options.OptionsProfilePlot
 
isObsolete() - Method in class net.imagej.updater.FileObject
 
IsoData() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.IsoData
 
isoData(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
isoData(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
isoData(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
isoData(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
isoData(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
isoData(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
isOfficial() - Method in class net.imagej.updater.UpdateSite
Gets whether the site is one of those listed on the canonical list of update sites.
isOpenAs32bitFloat() - Method in class net.imagej.options.OptionsDicom
 
isOval() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
isPlanar() - Method in class net.imagej.command.AbstractPlanarCommand
 
isPlanar() - Method in interface net.imagej.command.PlanarCommand
 
isPreviewActive() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
isPreviewActive() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
isProcessingEvents() - Method in class net.imagej.legacy.LegacyService
This is not part of the public API.
isProtectedLocation(File) - Static method in class net.imagej.updater.util.UpdaterUtil
Determines whether the ImageJ root directory is in an area protected by the OS.
isRecommended() - Method in class net.imagej.updater.URLChange
 
isRequireCommandKey() - Method in class net.imagej.options.OptionsMisc
 
isRequired() - Method in class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
isResolved - Variable in class net.imagej.server.WebCommandModuleItem
 
isRGBMerged() - Method in interface net.imagej.Dataset
For use in legacy layer only, this flag allows the various legacy layer image translators to support color images correctly.
isRGBMerged() - Method in class net.imagej.DefaultDataset
 
isRMIEnabled() - Method in class net.imagej.legacy.IJ1Helper
Determines whether Edit>Options>Misc...>Run single instance listener is set.
isRotateXZ() - Method in class net.imagej.options.OptionsDicom
 
isRotateYZ() - Method in class net.imagej.options.OptionsDicom
 
isRunGcOnClick() - Method in class net.imagej.options.OptionsMemoryAndThreads
Returns true if ImageJ will run the garbage collector when user clicks on the status area.
isRunSingleInstanceListener() - Method in class net.imagej.options.OptionsMisc
 
isSaveColumnHeaders() - Method in class net.imagej.options.OptionsInputOutput
 
isSaveOrderIntel() - Method in class net.imagej.options.OptionsInputOutput
 
isSaveRowNumbers() - Method in class net.imagej.options.OptionsInputOutput
 
isScaleWhenConverting() - Method in class net.imagej.options.OptionsConversions
 
isSciJavaIO() - Method in class net.imagej.legacy.ImageJ2Options
 
isSearchBarEnabled() - Method in class net.imagej.legacy.search.SearchOptions
 
isSearchBarFull() - Method in class net.imagej.legacy.search.SearchOptions
 
isSearchPanelClosedByDefaultAction() - Method in class net.imagej.legacy.search.SearchOptions
 
isSearchPanelEmbedded() - Method in class net.imagej.legacy.search.SearchOptions
 
isSelected() - Method in class net.imagej.display.AbstractDataView
 
isSelected() - Method in interface net.imagej.display.DataView
 
isSelected() - Method in class net.imagej.display.event.DataViewSelectionEvent
 
isSelected() - Method in class net.imagej.display.OverlayInfo
 
isShortcutOverridden() - Method in class net.imagej.legacy.search.SearchOptions
 
isSigned() - Method in interface net.imagej.Dataset
TODO
isSigned() - Method in class net.imagej.DefaultDataset
 
isSigned() - Method in interface net.imagej.types.DataType
Returns true if this DataType represents a signed number.
isSigned() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
isSigned() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
isSigned() - Method in class net.imagej.types.DataType16BitSignedInteger
 
isSigned() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
isSigned() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
isSigned() - Method in class net.imagej.types.DataType32BitSignedFloat
 
isSigned() - Method in class net.imagej.types.DataType32BitSignedInteger
 
isSigned() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
isSigned() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
isSigned() - Method in class net.imagej.types.DataType64BitSignedFloat
 
isSigned() - Method in class net.imagej.types.DataType64BitSignedInteger
 
isSigned() - Method in class net.imagej.types.DataType8BitSignedInteger
 
isSigned() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
isSigned() - Method in class net.imagej.types.DataTypeBoolean
 
isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
isSigned() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
isSpatial() - Method in interface net.imagej.axis.AxisType
 
isSpatial() - Method in class net.imagej.axis.DefaultAxisType
 
isSyncEnabled() - Method in class net.imagej.legacy.ImageJ2Options
Gets whether to synchronize ImageJ 1.x and ImageJ2 data structures.
isSyncEnabled() - Method in class net.imagej.legacy.LegacyService
States whether ImageJ1 and ImageJ2 data structures should be kept in sync.
isTheUpdaterUpdateable(FilesCollection) - Static method in class net.imagej.updater.Installer
 
isTheUpdaterUpdateable(FilesCollection, CommandService) - Static method in class net.imagej.updater.Installer
 
isTrue(long[]) - Method in class net.imagej.plugins.commands.assign.noisereduce.WithinRadiusOfPointSetOriginCondition
 
isUninstallable() - Method in class net.imagej.updater.FileObject
 
isUpdateable() - Method in class net.imagej.updater.FileObject
 
isUpdateable(boolean) - Method in class net.imagej.updater.FileObject
 
isUpdateablePlatform(FilesCollection) - Method in class net.imagej.updater.FileObject
 
isUpdateablePlatform(String) - Method in class net.imagej.updater.util.UpdaterUtil
 
isUpdateDefaults() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
isUpdateSite(String) - Method in class net.imagej.updater.FilesCollection
 
isUploadable(FilesCollection) - Method in class net.imagej.updater.FileObject
Deprecated.
isUploadable(FilesCollection, boolean) - Method in class net.imagej.updater.FileObject
Tells whether this file can be uploaded to its update site Note: this does not check whether the file is locally modified.
isUploadable() - Method in class net.imagej.updater.UpdateSite
 
isUseInvertingLUT() - Method in class net.imagej.options.OptionsAppearance
 
isUseJFileChooser() - Method in class net.imagej.options.OptionsInputOutput
 
isUsePtrCursor() - Method in class net.imagej.options.OptionsMisc
 
isUseSystemProxy() - Method in class net.imagej.options.OptionsProxy
 
isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.InstallOrUpdate
 
isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.KeepAsIs
 
isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Remove
Determines whether we can remove (or unshadow) files from a particular update site.
isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Uninstall
 
isValid(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Upload
Determines whether a particular set of files can be uploaded to this update site.
isValid(FileObject.Action) - Method in enum net.imagej.updater.FileObject.Status
 
isValid(FilesCollection, FileObject) - Method in interface net.imagej.updater.GroupAction
 
isValidSourcePlane(long) - Method in interface net.imagej.plugins.commands.restructure.ColorTableRemapper.RemapAlgorithm
 
isVertProfile() - Method in class net.imagej.options.OptionsProfilePlot
 
isVisible(DataView) - Method in class net.imagej.display.DefaultImageDisplay
 
isVisible(DataView) - Method in interface net.imagej.display.ImageDisplay
Tests whether the given view should currently be visible in this display.
isVisible() - Method in class net.imagej.legacy.IJ1Helper
 
isVisible() - Method in class net.imagej.legacy.ui.LegacyUI
 
isWeightedRgbConversions() - Method in class net.imagej.options.OptionsConversions
 
isWindowClosed(Frame) - Method in class net.imagej.legacy.IJ1Helper
 
isXY() - Method in interface net.imagej.axis.AxisType
 
isXY() - Method in class net.imagej.axis.DefaultAxisType
 
isYFixedScale() - Method in class net.imagej.options.OptionsProfilePlot
 
italic - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
italic - Variable in class net.imagej.ui.swing.updater.DiffView
 
italic(String) - Method in class net.imagej.ui.swing.updater.FileDetails
 
item - Variable in class net.imagej.updater.util.StderrProgress
 
itemCount - Variable in class net.imagej.updater.util.Downloader
 
itemDone(Object) - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
itemDone(Object) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
 
itemDone(Object) - Method in class net.imagej.updater.util.AbstractProgressable
 
itemDone(Object) - Method in interface net.imagej.updater.util.Progress
 
itemDone(Object) - Method in class net.imagej.updater.util.StderrProgress
 
itemLatestUpdate - Variable in class net.imagej.ui.swing.updater.ProgressDialog
 
itemStateChanged(ItemEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
 
itemTotal - Variable in class net.imagej.updater.util.Downloader
 
itemUpdatesTooFast() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
IterableCentralMoment00<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment00 directly.
IterableCentralMoment00() - Constructor for class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment00
 
IterableCentralMoment11<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments.centralmoments
Op to calculate the imageMoments.centralMoment11 directly.
IterableCentralMoment11() - Constructor for class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment11
 
IterableGeometricMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.geometricMean directly.
IterableGeometricMean() - Constructor for class net.imagej.ops.stats.IterableGeometricMean
 
IterableHarmonicMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.harmonicMean directly.
IterableHarmonicMean() - Constructor for class net.imagej.ops.stats.IterableHarmonicMean
 
iterableInterval(IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyNamespace
 
iterableInterval(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyNamespace
 
IterableMax<T extends RealType<T>> - Class in net.imagej.ops.stats
Op to calculate the stats.max.
IterableMax() - Constructor for class net.imagej.ops.stats.IterableMax
 
IterableMean<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.mean directly.
IterableMean() - Constructor for class net.imagej.ops.stats.IterableMean
 
IterableMin<T extends RealType<T>> - Class in net.imagej.ops.stats
Op to calculate the stats.min.
IterableMin() - Constructor for class net.imagej.ops.stats.IterableMin
 
IterableStandardDeviation<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.stdDev directly.
IterableStandardDeviation() - Constructor for class net.imagej.ops.stats.IterableStandardDeviation
 
IterableVariance<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.stats
Op to calculate the stats.variance using the online algorithm from Knuth and Welford.
IterableVariance() - Constructor for class net.imagej.ops.stats.IterableVariance
 
iterate(Enumeration<T>) - Static method in class net.imagej.updater.util.UpdaterUtil
 
iterationOrder() - Method in class net.imagej.DefaultDataset
 
iterationOrder() - Method in class net.imagej.ImgPlus
 
iterationOrder() - Method in class net.imagej.ops.slice.SlicesII
 
iterationOrder() - Method in class net.imagej.table.ResultsImg
 
iterator() - Method in class net.imagej.DefaultDataset
 
iterator() - Method in class net.imagej.ImgPlus
 
iterator() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
iterator() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
iterator() - Method in class net.imagej.legacy.convert.TableListWrapper
 
iterator() - Method in interface net.imagej.mesh.Triangles
 
iterator() - Method in interface net.imagej.mesh.Vertices
 
iterator() - Method in class net.imagej.omero.LazyTableList
 
iterator() - Method in class net.imagej.ops.slice.SlicesII
 
iterator() - Method in class net.imagej.table.ResultsImg
 
iterator() - Method in class net.imagej.updater.FilesCollection
 
iterator() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 

J

JarLauncher - Class in net.imagej.launcher
A convenience class to launch main classes defined in .jar files' manifests.
JarLauncher() - Constructor for class net.imagej.launcher.JarLauncher
 
JavaAgent - Class in net.imagej.patcher
A Java agent to help with legacy issues.
JavaAgent() - Constructor for class net.imagej.patcher.JavaAgent
 
javap(File, String) - Method in class net.imagej.updater.Diff
Run javap on a class file.
javap(File) - Method in class net.imagej.updater.Diff
Run javap on a class file.
JHotDrawAdapter<F extends Figure> - Interface in net.imagej.ui.swing.overlay
Interface for JHotDraw-based adapters, which maintain a bidirectional link between an ImageJ Overlay and a JHotDraw Figure.
JHotDrawImageCanvas - Class in net.imagej.ui.swing.viewer.image
A renderer of an ImageCanvas, which uses JHotDraw's DefaultDrawingView component to do most of the work.
JHotDrawImageCanvas(SwingImageDisplayViewer) - Constructor for class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
JHotDrawService - Class in net.imagej.ui.swing.overlay
The JHotDraw service manages the bidirectional linkage between ImageJ Overlays and JHotDraw Figures.
JHotDrawService() - Constructor for class net.imagej.ui.swing.overlay.JHotDrawService
 
JHotDrawTool - Interface in net.imagej.ui.swing.overlay
A JHotDraw Tool (not a Tool) with some extra needed API methods.
join(C, A, UnaryComputerOp<A, B>, UnaryComputerOp<B, C>, UnaryOutputFactory<A, B>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "join" operation on the given arguments.
join(C, UnaryInplaceOp<A, B>, UnaryInplaceOp<B, C>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "join" operation on the given arguments.
join(A, A, List<? extends UnaryComputerOp<A, A>>, UnaryOutputFactory<A, A>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "join" operation on the given arguments.
join(O, List<? extends UnaryInplaceOp<I, O>>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "join" operation on the given arguments.
join(B, AO, UnaryInplaceOp<AI, AO>, UnaryComputerOp<AO, B>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "join" operation on the given arguments.
join(BO, A, UnaryComputerOp<A, BO>, UnaryInplaceOp<BI, BO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "join" operation on the given arguments.
join() - Method in class net.imagej.server.ImageJServer
 
join(String, Iterable<T>) - Static method in class net.imagej.updater.util.UpdaterUtil
 
Join2Computers<A,B,C> - Interface in net.imagej.ops.join
A join operation which joins two UnaryComputerOps.
Join2Inplaces<A,B extends A,C extends B> - Interface in net.imagej.ops.join
A join operation which joins two UnaryInplaceOps.
Join2Ops<OP1 extends Op,OP2 extends Op> - Interface in net.imagej.ops.join
A join operation which joins two UnaryComputerOps.
JoinComputerAndInplace<A,BI,BO extends BI> - Interface in net.imagej.ops.join
JoinInplaceAndComputer<AI,AO extends AI,B> - Interface in net.imagej.ops.join
JoinNComputers<A> - Interface in net.imagej.ops.join
A join operation which joins a list of UnaryComputerOps.
JoinNInplaces<I,O extends I> - Interface in net.imagej.ops.join
A join operation which joins a list of UnaryInplaceOps.
JoinNOps<OP extends Op> - Interface in net.imagej.ops.join
A join operation which joins two UnaryComputerOps.
JS_REMOTE_URL - Static variable in class net.imagej.launcher.RemoteUpdater
 
JsonService - Interface in net.imagej.server.services
 
jumpBck(long) - Method in class net.imagej.Position
Moves the Position backward the given number of steps.
jumpFwd(long) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
jumpFwd(long) - Method in class net.imagej.Position
Moves the Position forward the given number of steps.

K

kDTreeRealPointCollection(KDTree<L>) - Method in interface net.imagej.roi.ROIService
Creates a read-only RealPointCollection containing the given points.
kDTreeRealPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService
Creates a read-only RealPointCollection containing the given points.
KeepAsIs - Class in net.imagej.updater.action
The no-op action.
KeepAsIs() - Constructor for class net.imagej.updater.action.KeepAsIs
 
kendallTau(Iterable<T>, Iterable<U>) - Method in class net.imagej.ops.coloc.ColocNamespace
 
KendallTauBRank<T extends RealType<T>,U extends RealType<U>> - Class in net.imagej.ops.coloc.kendallTau
This algorithm calculates Kendall's Tau-b rank correlation coefficient
KendallTauBRank() - Constructor for class net.imagej.ops.coloc.kendallTau.KendallTauBRank
 
kernel(double[]...) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernel" operation on the given arguments.
kernel(double[][], T) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernel" operation on the given arguments.
kernel2ndDerivBiGauss(double[], Integer) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type DoubleType with an isotropic 2nd derivative of BiGauss kernel.
kernel2ndDerivBiGauss(double[], Integer, T) - Method in class net.imagej.ops.create.CreateNamespace
Creates an Img of the given type and of appropriate dimensions that displays an isotropic 2nd derivative of BiGauss filter.
kernelBiGauss(double[], Integer) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type DoubleType with an isotropic BiGauss kernel.
kernelBiGauss(double[], Integer, T) - Method in class net.imagej.ops.create.CreateNamespace
Creates an Img of the given type and of appropriate dimensions that displays an isotropic BiGauss filter.
kernelDiffraction(Dimensions, double, double, double, double, double, double, double, T) - Method in class net.imagej.ops.create.CreateNamespace
 
kernelGabor(Double, double[], T) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type outType with an isotropic Gabor kernel.
kernelGabor(double[], double[], T) - Method in class net.imagej.ops.create.CreateNamespace
Creates an Img of the given type and of appropriate dimensions that displays a Gabor filter.
kernelGaborComplexDouble(Double, double...) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type ComplexDoubleType with an isotropic Gabor kernel.
kernelGaborComplexDouble(double[], double...) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type ComplexDoubleType with a Gabor kernel.
kernelGaborComplexFloat(Double, double...) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type ComplexFloatType with an isotropic Gabor kernel.
kernelGaborComplexFloat(double[], double...) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type ComplexFloatType with a Gabor kernel.
kernelGaborDouble(Double, double...) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type DoubleType with an isotropic Gabor kernel.
kernelGaborDouble(double[], double...) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type DoubleType with a Gabor kernel.
kernelGaborFloat(Double, double...) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type FloatType with an isotropic Gabor kernel.
kernelGaborFloat(double[], double...) - Method in class net.imagej.ops.create.CreateNamespace
Convenience wrapper to create an Img of type FloatType with a Gabor kernel.
kernelGauss(double...) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernelGauss" operation on the given arguments.
kernelGauss(Double, int, T) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernelGauss" operation on the given arguments.
kernelGauss(Double, int) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernelGauss" operation on the given arguments.
kernelGauss(double[], T) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernelGauss" operation on the given arguments.
kernelLog(double...) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernelLog" operation on the given arguments.
kernelLog(Double, int, T) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernelLog" operation on the given arguments.
kernelLog(Double, int) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernelLog" operation on the given arguments.
kernelLog(double[], T) - Method in class net.imagej.ops.create.CreateNamespace
Executes the "kernelLog" operation on the given arguments.
kernelSobel(T) - Method in class net.imagej.ops.create.CreateNamespace
 
knownConstant() - Method in class net.imagej.omero.legacy.text.OMEROText
knownConstant() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
knownConstant() - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
 
knownTypes() - Static method in class net.imagej.axis.Axes
 
KonamiHandler - Class in net.imagej.plugins.tools
Oh, the nostalgia!
KonamiHandler() - Constructor for class net.imagej.plugins.tools.KonamiHandler
 
kurtosis(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
kurtosis(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
kurtosisExcess() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 

L

label(String, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
label - Variable in class net.imagej.updater.util.StderrProgress
 
labelComponent(String, JComponent, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
labelComponentRigid(String, JComponent) - Static method in class net.imagej.ui.swing.updater.SwingTools
Uses a GridBagLayout to prevent odd resizing behaviours.
LabelImage - Class in net.imagej.tensorflow.demo
Command to use an Inception-image recognition model to label an image.
LabelImage() - Constructor for class net.imagej.tensorflow.demo.LabelImage
 
labeling() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "labeling" namespace.
LabelingLabelingFactory<L extends Comparable<L>> - Class in net.imagej.ops.bufferfactories
UnaryOutputFactory used to create an empty output Labeling of same type and dimensionality as the input Labeling
LabelingLabelingFactory() - Constructor for class net.imagej.ops.bufferfactories.LabelingLabelingFactory
 
labelingMapping(LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyNamespace
 
labelingMapping(LabelingMapping<L>, LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyNamespace
 
labelingMapping() - Method in class net.imagej.ops.create.CreateNamespace
 
labelingMapping(int) - Method in class net.imagej.ops.create.CreateNamespace
 
LabelingNamespace - Class in net.imagej.ops.labeling
Namespace for Ops related to labelings.
LabelingNamespace() - Constructor for class net.imagej.ops.labeling.LabelingNamespace
 
LabelRegionToPolygonConverter - Class in net.imagej.ops.geom.geom2d
Converts a LabelRegion to a polygon
LabelRegionToPolygonConverter() - Constructor for class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter
 
last() - Method in class net.imagej.Position
Sets the Position to its last state (all dimension positions to max-1)
lastIndexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
lastIndexOf(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
lastIndexOf(Object) - Method in class net.imagej.legacy.convert.TableListWrapper
 
lastIndexOf(Object) - Method in class net.imagej.omero.LazyTableList
 
lastModified - Variable in class net.imagej.updater.util.Downloader
 
lastShown - Variable in class net.imagej.updater.util.StderrProgress
 
latestUpdate - Variable in class net.imagej.ui.swing.updater.ProgressDialog
 
launch(ClassLoader, String, String[]) - Static method in class net.imagej.launcher.ClassLauncher
 
launch(String...) - Static method in class net.imagej.Main
launch() - Method in class net.imagej.omero.ModuleAdapter
Executes the associated ImageJ module as an OMERO script.
launchers - Variable in class net.imagej.updater.util.UpdaterUtil
 
launchJar(String, String[]) - Static method in class net.imagej.launcher.JarLauncher
Helper to launch .jar files (by inspecting their Main-Class attribute).
LazyOverlay - Class in net.imagej.omero.legacy
An Overlay which is backed by a LazyROITree.
LazyOverlay(LazyROITree, ConvertService) - Constructor for class net.imagej.omero.legacy.LazyOverlay
 
LazyROITree - Class in net.imagej.omero.roi
ROITree which downloads the associated ROIs only when the children are requested.
LazyROITree(TreeNode<?>, long, OMEROLocation, OMEROService, LogService) - Constructor for class net.imagej.omero.roi.LazyROITree
 
LazyTableList - Class in net.imagej.omero
A List<Table<?, ?>> whose elements are downloaded lazily from an OMERO server.
LazyTableList(long, OMEROLocation, OMEROService, LogService) - Constructor for class net.imagej.omero.LazyTableList
 
lbp() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "lbp" namespace.
lbp2D(RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.features.lbp2d.LBPNamespace
 
lbp2D(ArrayList<LongType>, RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.features.lbp2d.LBPNamespace
 
LBP2DFeature<I extends RealType<I>> - Interface in net.imagej.ops.features.lbp2d
Marker interface for 2D local binary pattern feature.
LBPNamespace - Class in net.imagej.ops.features.lbp2d
Namespace for 2d local binary pattern feature
LBPNamespace() - Constructor for class net.imagej.ops.features.lbp2d.LBPNamespace
 
leastSquares(Collection<Vector3dc>) - Method in class net.imagej.ops.stats.StatsNamespace
 
leftShift(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
leftShift(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
leftShift(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
LEGACY_OMERO_ROI - Static variable in class net.imagej.omero.legacy.LegacyOMEROROIService
 
LegacyAdapter - Interface in net.imagej.legacy.ui
Marker interface for classes that adapt between legacy ImageJ and IJ2 constructs.
LegacyAppConfiguration - Interface in net.imagej.legacy.plugin
Interface for configuring the legacy application appearance.
LegacyApplicationFrame - Class in net.imagej.legacy.ui
LegacyAdapter between the ApplicationFrame class and active ij.ImageJ.
LegacyApplicationFrame(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyApplicationFrame
 
LegacyAutoImporter - Class in net.imagej.legacy.plugin
 
LegacyAutoImporter() - Constructor for class net.imagej.legacy.plugin.LegacyAutoImporter
 
LegacyClassLoader - Class in imagej.patcher
Deprecated.
LegacyClassLoader(boolean) - Constructor for class imagej.patcher.LegacyClassLoader
Deprecated.
 
LegacyClassLoader - Class in net.imagej.patcher
A special purpose class loader to encapsulate ImageJ 1.x "instances" from each other.
LegacyClassLoader(boolean) - Constructor for class net.imagej.patcher.LegacyClassLoader
 
LegacyClassLoader() - Constructor for class net.imagej.patcher.LegacyClassLoader
 
LegacyCodeRunner - Class in net.imagej.legacy
Runs the given ImageJ 1.x PlugIn class.
LegacyCodeRunner() - Constructor for class net.imagej.legacy.LegacyCodeRunner
 
LegacyCommand - Class in net.imagej.legacy.command
Executes an ImageJ v1.x command.
LegacyCommand() - Constructor for class net.imagej.legacy.command.LegacyCommand
 
LegacyCommandFinder - Class in net.imagej.legacy.command
Discovers legacy ImageJ 1.x commands.
LegacyCommandFinder(LegacyService) - Constructor for class net.imagej.legacy.command.LegacyCommandFinder
 
LegacyCommandInfo - Class in net.imagej.legacy.command
Metadata about an ImageJ 1.x PlugIn.
LegacyCommandInfo(MenuPath, String, String, ClassLoader) - Constructor for class net.imagej.legacy.command.LegacyCommandInfo
 
LegacyCommandline - Class in net.imagej.legacy
Handles the following ImageJ 1.x commands, as per ImageJ's documentation: "file-name" Opens a file
Example 1: blobs.tif
Example 2: /Users/wayne/images/blobs.tif
Example 3: e81*.tif
-macro path [arg] Runs a macro or script (JavaScript, BeanShell or Python), passing an optional string argument, which the macro or script can be retrieve using the getArgument() function.
LegacyCommandline() - Constructor for class net.imagej.legacy.LegacyCommandline
 
LegacyCommandline.Batch - Class in net.imagej.legacy
Implements -batch path [arg] and -batch-no-exit path [arg].
LegacyCommandline.Debug - Class in net.imagej.legacy
Implements -debug.
LegacyCommandline.Eval - Class in net.imagej.legacy
Implements -eval "macro code".
LegacyCommandline.Filename - Class in net.imagej.legacy
Handles "file-name".
LegacyCommandline.IJPath - Class in net.imagej.legacy
Implements -ijpath path.
LegacyCommandline.Macro - Class in net.imagej.legacy
Implements -macro path [arg].
LegacyCommandline.Port - Class in net.imagej.legacy
Implements -port&lt;n&gt;.
LegacyCommandline.Run - Class in net.imagej.legacy
Implements -run command.
LegacyDialogPrompt - Class in net.imagej.legacy.ui
LegacyAdapter implementation for adapting between DialogPrompt and the ImageJ1 dialog prompts.
LegacyDialogPrompt(LegacyService, String, String, DialogPrompt.OptionType) - Constructor for class net.imagej.legacy.ui.LegacyDialogPrompt
 
LegacyDisplayViewer - Interface in net.imagej.legacy.display
Marker interface to indicate display viewers that do not need a display window, as ImageJ1 will be handling the display.
LegacyEditor - Interface in net.imagej.legacy.plugin
A minimal interface for the editor to use instead of ImageJ 1.x' limited AWT-based one.
legacyEnabled() - Method in class net.imagej.legacy.convert.AbstractLegacyConverter
 
LegacyEnvironment - Class in imagej.patcher
Deprecated.
LegacyEnvironment(ClassLoader, boolean) - Constructor for class imagej.patcher.LegacyEnvironment
Deprecated.
Constructs a new legacy environment.
LegacyEnvironment - Class in net.imagej.patcher
Encapsulates an ImageJ 1.x "instance".
LegacyEnvironment(ClassLoader, boolean) - Constructor for class net.imagej.patcher.LegacyEnvironment
Constructs a new legacy environment.
LegacyHooks - Class in imagej.patcher
Deprecated.
LegacyHooks() - Constructor for class imagej.patcher.LegacyHooks
Deprecated.
 
LegacyHooks - Class in net.imagej.patcher
Extension points for ImageJ 1.x.
LegacyHooks() - Constructor for class net.imagej.patcher.LegacyHooks
 
LegacyHooks.FatJarNameComparator - Class in imagej.patcher
Deprecated.
 
LegacyHooks.FatJarNameComparator - Class in net.imagej.patcher
Comparator to ensure that problematic fat JARs are sorted last.
LegacyImageDisplayService - Class in net.imagej.legacy.display
HACK - this whole service exists as a hack to facilitate running commands that require a Dataset without requiring ImageJ2 synchronization to be enabled via Edit>Options>ImageJ2.
LegacyImageDisplayService() - Constructor for class net.imagej.legacy.display.LegacyImageDisplayService
 
LegacyImageDisplayViewer - Class in net.imagej.legacy.display
Default ImageDisplayViewer implementation for viewing the IJ2 Dataset and Data outputs via an ImagePlus.
LegacyImageDisplayViewer() - Constructor for class net.imagej.legacy.display.LegacyImageDisplayViewer
 
LegacyImageJApp - Class in net.imagej.legacy
Application metadata and operations for ImageJ 1.x.
LegacyImageJApp() - Constructor for class net.imagej.legacy.LegacyImageJApp
 
LegacyImageMap - Class in net.imagej.legacy
An image map between legacy ImageJ ImagePlus objects and modern ImageJ ImageDisplays.
LegacyImageMap(LegacyService) - Constructor for class net.imagej.legacy.LegacyImageMap
 
LegacyInitializer - Class in net.imagej.legacy.plugin
The ij1-patcher defaults to running this class whenever a new PluginClassLoader is initialized.
LegacyInitializer() - Constructor for class net.imagej.legacy.plugin.LegacyInitializer
 
LegacyInjector - Class in imagej.patcher
Deprecated.
LegacyInjector() - Constructor for class imagej.patcher.LegacyInjector
Deprecated.
 
LegacyInjector - Class in net.imagej.patcher
Overrides class behavior of ImageJ1 classes using bytecode manipulation.
LegacyInjector() - Constructor for class net.imagej.patcher.LegacyInjector
 
LegacyInputHarvester - Class in net.imagej.legacy.ui
Trivial Legacy extension of the SwingInputHarvester.
LegacyInputHarvester() - Constructor for class net.imagej.legacy.ui.LegacyInputHarvester
 
LegacyOMEROROIService - Class in net.imagej.omero.legacy
A ROIService for working with ROIs in OMERO and imagej-legacy.
LegacyOMEROROIService() - Constructor for class net.imagej.omero.legacy.LegacyOMEROROIService
 
LegacyOMEROService - Class in net.imagej.omero.legacy
OMEROService which can handle ImageJ 1.x data structures.
LegacyOMEROService() - Constructor for class net.imagej.omero.legacy.LegacyOMEROService
 
LegacyOpener - Interface in net.imagej.legacy.plugin
Extension point for actions to be executed after Help>Refresh Menus.
LegacyPostRefreshMenus - Interface in net.imagej.legacy.plugin
Extension point for actions to be executed after Help>Refresh Menus.
LegacyROIPreprocessor - Class in net.imagej.omero.legacy
If a ROITree is required, this preprocessor takes the active ImagePlus's overlay and converts it into a ROITree.
LegacyROIPreprocessor() - Constructor for class net.imagej.omero.legacy.LegacyROIPreprocessor
 
legacyService - Variable in class net.imagej.legacy.convert.AbstractLegacyConverter
 
legacyService - Variable in class net.imagej.legacy.LegacyCommandline
 
LegacyService - Class in net.imagej.legacy
Service for working with legacy ImageJ 1.x.
LegacyService() - Constructor for class net.imagej.legacy.LegacyService
 
LegacyStatusBar - Class in net.imagej.legacy.ui
Adapter StatusBar implementation that delegates to legacy ImageJ methods.
LegacyStatusBar(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyStatusBar
 
LegacyToolBar - Class in net.imagej.legacy.ui
LegacyAdapter implementation for adapting between ToolBar and the ImageJ1 tool bar.
LegacyToolBar(LegacyService) - Constructor for class net.imagej.legacy.ui.LegacyToolBar
 
LegacyUI - Class in net.imagej.legacy.ui
Swing-based UserInterface implementation for working between ImageJ2 (net.imagej.*) and ImageJ1 (ij.*) applications.
LegacyUI() - Constructor for class net.imagej.legacy.ui.LegacyUI
 
LegacyUtils - Class in net.imagej.legacy.translate
A bag of static methods used throughout the translation layer
LegacyUtils() - Constructor for class net.imagej.legacy.translate.LegacyUtils
 
lessThan(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
lessThan(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThan(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThan(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThan(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThan(O, I, I) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThanOrEqual(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
lessThanOrEqual(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThanOrEqual(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThanOrEqual(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThanOrEqual(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
 
lessThanOrEqual(O, I, I) - Method in class net.imagej.ops.logic.LogicNamespace
 
Li() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Li
 
li(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
li(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
li(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
li(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
li(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
li(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
LiICQ<T extends RealType<T>,U extends RealType<U>> - Class in net.imagej.ops.coloc.icq
This algorithm calculates Li et al.'s ICQ (intensity correlation quotient).
LiICQ() - Constructor for class net.imagej.ops.coloc.icq.LiICQ
 
linalg() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "linalg" namespace
LinAlgNamespace - Class in net.imagej.ops.linalg
The linear algebra namespace has ops for vectors and matrices.
LinAlgNamespace() - Constructor for class net.imagej.ops.linalg.LinAlgNamespace
 
line(RealLocalizable, RealLocalizable) - Method in interface net.imagej.roi.ROIService
Creates a WritableLine with the given endpoints.
line(double[], double[], boolean) - Method in interface net.imagej.roi.ROIService
Creates a WritableLine with the given endpoints.
LinearAxis - Interface in net.imagej.axis
A CalibratedAxis that scales coordinates along the axis in a linear fashion.
LinearCalibrator - Class in net.imagej.units
LinearCalibrator is a Calibrator that maps values linearly from an input space to an output space.
LinearCalibrator(double, double) - Constructor for class net.imagej.units.LinearCalibrator
 
linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "linearFilter" operation on the given arguments.
linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "linearFilter" operation on the given arguments.
linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "linearFilter" operation on the given arguments.
linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "linearFilter" operation on the given arguments.
linearFilter(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, BinaryComputerOp<RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "linearFilter" operation on the given arguments.
LinearSpace<A extends LinearAxis> - Interface in net.imagej.space
A CalibratedSpace whose axes are of type LinearAxis.
LineJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for line overlays.
LineJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
LineOverlay - Class in net.imagej.overlay
Represents a line going from here to there, possibly with arrows on one end, the other or both.
LineOverlay() - Constructor for class net.imagej.overlay.LineOverlay
 
LineOverlay(Context) - Constructor for class net.imagej.overlay.LineOverlay
 
LineOverlay(Context, double[], double[]) - Constructor for class net.imagej.overlay.LineOverlay
 
lineTo(long, long) - Method in class net.imagej.DrawingTool
Draws a line in the current UV plane from the current origin to the specified coordinate.
LineToIJLineConverter - Class in net.imagej.legacy.convert.roi.line
Converts a Line to a Line.
LineToIJLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.LineToIJLineConverter
 
lineWidth - Variable in class net.imagej.updater.util.StderrProgress
 
LineWrapper - Class in net.imagej.legacy.convert.roi.line
A Line with an associated WritableLine.
LineWrapper(WritableLine) - Constructor for class net.imagej.legacy.convert.roi.line.LineWrapper
 
link(String, ActionListener) - Method in class net.imagej.ui.swing.updater.DiffView
Add a link.
link(String) - Method in class net.imagej.ui.swing.updater.FileDetails
 
linkOverlay(F, JHotDrawAdapter<F>, ImageDisplay) - Method in class net.imagej.ui.swing.overlay.JHotDrawService
Links a new Overlay and OverlayView, created by the given JHotDrawAdapter, to the specified JHotDraw Figure of a particular ImageDisplay.
list(String, boolean, Iterable<?>, String, FileObject) - Method in class net.imagej.ui.swing.updater.FileDetails
 
list(List<String>, FilesCollection.Filter) - Method in class net.imagej.updater.CommandLine
 
list(List<String>) - Method in class net.imagej.updater.CommandLine
 
ListBlackTopHat<T extends RealType<T>> - Class in net.imagej.ops.morphology.blackTopHat
Computes the black-top-hat of a RandomAccessibleInterval using a List of Shapes.
ListBlackTopHat() - Constructor for class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
 
listClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
ListClose<T extends RealType<T>> - Class in net.imagej.ops.morphology.close
Computes the closing of a RandomAccessibleInterval using a List of Shapes.
ListClose() - Constructor for class net.imagej.ops.morphology.close.ListClose
 
listCurrent(List<String>) - Method in class net.imagej.updater.CommandLine
 
ListDilate<T extends RealType<T>> - Class in net.imagej.ops.morphology.dilate
Computes the dilation of a RandomAccessibleInterval using a List of Shapes.
ListDilate() - Constructor for class net.imagej.ops.morphology.dilate.ListDilate
 
listener - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
ListErode<T extends RealType<T>> - Class in net.imagej.ops.morphology.erode
Computes the erosion of a RandomAccessibleInterval using a List of Shapes.
ListErode() - Constructor for class net.imagej.ops.morphology.erode.ListErode
 
listFromSite(List<String>) - Method in class net.imagej.updater.CommandLine
 
listIssues() - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
listIterator() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
listIterator(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
listIterator() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
listIterator(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
listIterator() - Method in class net.imagej.legacy.convert.TableListWrapper
 
listIterator(int) - Method in class net.imagej.legacy.convert.TableListWrapper
 
listIterator() - Method in class net.imagej.omero.LazyTableList
 
listIterator(int) - Method in class net.imagej.omero.LazyTableList
 
listLocalOnly(List<String>) - Method in class net.imagej.updater.CommandLine
 
listModified(List<String>) - Method in class net.imagej.updater.CommandLine
 
listNotUptodate(List<String>) - Method in class net.imagej.updater.CommandLine
 
ListOpen<T extends RealType<T>> - Class in net.imagej.ops.morphology.open
Computes the closing of a RandomAccessibleInterval using a List of Shapes.
ListOpen() - Constructor for class net.imagej.ops.morphology.open.ListOpen
 
listShadowed(List<String>) - Method in class net.imagej.updater.CommandLine
 
ListShortcuts - Class in net.imagej.plugins.commands.app
Lists ImageJ commands with keyboard shortcuts in a table.
ListShortcuts() - Constructor for class net.imagej.plugins.commands.app.ListShortcuts
 
ListToHTMLConverter - Class in net.imagej.notebook.mime
Converter from List to HTMLObject.
ListToHTMLConverter() - Constructor for class net.imagej.notebook.mime.ListToHTMLConverter
 
ListTopHat<T extends RealType<T>> - Class in net.imagej.ops.morphology.topHat
Computes the top-hat of a RandomAccessibleInterval using a List of Shapes.
ListTopHat() - Constructor for class net.imagej.ops.morphology.topHat.ListTopHat
 
listUpdateable(List<String>) - Method in class net.imagej.updater.CommandLine
 
listUpdateIssues() - Method in class net.imagej.updater.Conflicts
 
listUpdateSites(Collection<String>) - Method in class net.imagej.updater.CommandLine
 
listUploadIssues() - Method in class net.imagej.updater.Conflicts
 
listUptodate(List<String>) - Method in class net.imagej.updater.CommandLine
 
liveClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
load() - Method in class net.imagej.options.OptionsChannels
 
load() - Method in class net.imagej.options.OptionsMemoryAndThreads
Loads the instance variable fields from persistent storage.
loadCachedModel(Location, String, String...) - Method in class net.imagej.tensorflow.DefaultTensorFlowService
 
loadCachedModel(Location, String, String...) - Method in interface net.imagej.tensorflow.TensorFlowService
Extracts a persisted model from the given location.
LoadDataset - Class in net.imagej.plugins.commands.dataset
Dummy helper plugin that turns a Dataset into a Display by passing it through the plugin service.
LoadDataset() - Constructor for class net.imagej.plugins.commands.dataset.LoadDataset
 
loadFile(Location, String, String) - Method in class net.imagej.tensorflow.DefaultTensorFlowService
 
loadFile(Location, String, String) - Method in interface net.imagej.tensorflow.TensorFlowService
Extracts a file from the given location.
loadGraph(Location, String, String) - Method in class net.imagej.tensorflow.DefaultTensorFlowService
 
loadGraph(Location, String, String) - Method in interface net.imagej.tensorflow.TensorFlowService
Extracts a graph from the given location.
loadImage(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession
 
loadImage(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession
Gets an OMERO Image descriptor, loading remotely as needed.
loadImageName(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession
 
loadImageName(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession
Gets the metadata's associated image name, loading remotely as needed.
loadLabels(Location, String, String) - Method in class net.imagej.tensorflow.DefaultTensorFlowService
 
loadLabels(Location, String, String) - Method in interface net.imagej.tensorflow.TensorFlowService
Extracts labels from the given location.
loadLegacyClass() - Method in class net.imagej.legacy.command.LegacyCommandInfo
Gets the class backing this legacy command, loading it as needed.
loadLibrary() - Method in class net.imagej.tensorflow.DefaultTensorFlowService
Loads the TensorFlow library.
loadLibrary() - Method in interface net.imagej.tensorflow.TensorFlowService
Loads the TensorFlow Library.
loadLUT(File) - Method in class net.imagej.lut.DefaultLUTService
 
loadLUT(URL) - Method in class net.imagej.lut.DefaultLUTService
 
loadLUT(InputStream) - Method in class net.imagej.lut.DefaultLUTService
 
loadLUT(InputStream, int) - Method in class net.imagej.lut.DefaultLUTService
 
loadLUT(File) - Method in interface net.imagej.lut.LUTService
Loads a ColorTable from a File.
loadLUT(URL) - Method in interface net.imagej.lut.LUTService
Loads a ColorTable from a URL.
loadLUT(InputStream) - Method in interface net.imagej.lut.LUTService
Loads a ColorTable from an input stream.
loadLUT(InputStream, int) - Method in interface net.imagej.lut.LUTService
Loads a ColorTable from an input stream with the given expected length.
loadModel(Location, String, String...) - Method in class net.imagej.tensorflow.DefaultTensorFlowService
Deprecated.
loadModel(Location, String, String...) - Method in interface net.imagej.tensorflow.TensorFlowService
Deprecated.
loadPixels(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession
 
loadPixels(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession
Gets an OMERO Pixels descriptor, loading remotely as needed.
loadPixelsID(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession
 
loadPixelsID(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession
Gets the metadata's associated pixels ID, loading remotely as needed.
loadROIs() - Method in class net.imagej.omero.legacy.LazyOverlay
If the ROIs have not already been downloaded, this downloads the ROIs from the OMERO server.
local - Variable in class net.imagej.ui.swing.updater.DiffFile
 
LocalBernsenThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localBernsen
LocalThresholdMethod which is similar to LocalMidGreyThreshold, but uses a constant value rather than the value of the input pixel when the contrast in the neighborhood of that pixel is too small.
LocalBernsenThreshold() - Constructor for class net.imagej.ops.threshold.localBernsen.LocalBernsenThreshold
 
localBernsenThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localBernsenThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localChecksum - Variable in class net.imagej.updater.FileObject
 
LocalContrastThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localContrast
LocalThresholdMethod which determines whether a pixel is closer to the maximum or minimum pixel of a neighborhood.
LocalContrastThreshold() - Constructor for class net.imagej.ops.threshold.localContrast.LocalContrastThreshold
 
localContrastThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localContrastThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localFilename - Variable in class net.imagej.updater.FileObject
 
LocalHuangThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalHuangThreshold
 
LocalIJ1Threshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIJ1Threshold
 
LocalIntermodesThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIntermodesThreshold
 
LocalIsoDataThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIsoDataThreshold
 
localize(int[]) - Method in class net.imagej.display.AbstractDataView
 
localize(long[]) - Method in class net.imagej.display.AbstractDataView
 
localize(float[]) - Method in class net.imagej.display.AbstractDataView
 
localize(double[]) - Method in class net.imagej.display.AbstractDataView
 
localize(int[]) - Method in class net.imagej.display.DefaultImageDisplay
 
localize(long[]) - Method in class net.imagej.display.DefaultImageDisplay
 
localize(float[]) - Method in class net.imagej.display.DefaultImageDisplay
 
localize(double[]) - Method in class net.imagej.display.DefaultImageDisplay
 
localize(float[]) - Method in interface net.imagej.mesh.Vertex
 
localize(double[]) - Method in interface net.imagej.mesh.Vertex
 
localize(float[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
localize(double[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
localize(float[]) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
localize(double[]) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
localize(long[]) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
localize(float[]) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
localize(double[]) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
localize(int[]) - Method in class net.imagej.ops.image.integral.IntegralCursor
 
localize(int[]) - Method in class net.imagej.Position
Populates a given int[] with the current Position's coordinates
localize(long[]) - Method in class net.imagej.Position
Populates a given long[] with the current Position's coordinates
localize(float[]) - Method in class net.imagej.Position
Populates a given float[] with the current Position's coordinates
localize(double[]) - Method in class net.imagej.Position
Populates a given double[] with the current Position's coordinates
localizingCursor() - Method in class net.imagej.DefaultDataset
 
localizingCursor() - Method in class net.imagej.ImgPlus
 
localizingCursor() - Method in class net.imagej.ops.slice.SlicesII
 
localizingCursor() - Method in class net.imagej.table.ResultsImg
 
LocalLiThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalLiThreshold
 
locallyModified(FileObject, FilesCollection) - Method in class net.imagej.updater.Conflicts
 
locallyModified() - Method in class net.imagej.updater.FilesCollection
 
LocalMaxEntropyThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxEntropyThreshold
 
LocalMaxLikelihoodThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold
 
LocalMeanThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localMean
LocalThresholdMethod that uses the mean and operates directly of RAIs.
LocalMeanThreshold() - Constructor for class net.imagej.ops.threshold.localMean.LocalMeanThreshold
 
localMeanThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localMeanThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localMeanThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localMeanThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
LocalMeanThresholdIntegral<T extends RealType<T>> - Class in net.imagej.ops.threshold.localMean
Local threshold method that uses the IntegralMean for the threshold computation.
LocalMeanThresholdIntegral() - Constructor for class net.imagej.ops.threshold.localMean.LocalMeanThresholdIntegral
 
LocalMedianThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localMedian
LocalThresholdMethod using median.
LocalMedianThreshold() - Constructor for class net.imagej.ops.threshold.localMedian.LocalMedianThreshold
 
localMedianThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localMedianThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
LocalMidGreyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localMidGrey
LocalThresholdMethod which thresholds against the average of the maximum and minimum pixels of a neighborhood.
LocalMidGreyThreshold() - Constructor for class net.imagej.ops.threshold.localMidGrey.LocalMidGreyThreshold
 
localMidGreyThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localMidGreyThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
LocalMinErrorThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinErrorThreshold
 
LocalMinimumThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinimumThreshold
 
LocalMomentsThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMomentsThreshold
 
LocalNiblackThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localNiblack
LocalThresholdMethod using Niblack's thresholding method.
LocalNiblackThreshold() - Constructor for class net.imagej.ops.threshold.localNiblack.LocalNiblackThreshold
 
localNiblackThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localNiblackThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localNiblackThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localNiblackThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
LocalNiblackThresholdIntegral<T extends RealType<T>> - Class in net.imagej.ops.threshold.localNiblack
Niblack's local thresholding algorithm.
LocalNiblackThresholdIntegral() - Constructor for class net.imagej.ops.threshold.localNiblack.LocalNiblackThresholdIntegral
 
localOnly() - Method in class net.imagej.updater.FilesCollection
 
LocalOtsuThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalOtsuThreshold
 
LocalPercentileThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalPercentileThreshold
 
LocalPhansalkarThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localPhansalkar
This is a modification of Sauvola's thresholding method to deal with low contrast images.
LocalPhansalkarThreshold() - Constructor for class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThreshold
 
localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localPhansalkarThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
LocalPhansalkarThresholdIntegral<T extends RealType<T>> - Class in net.imagej.ops.threshold.localPhansalkar
Local thresholding algorithm as proposed by Phansalkar et al.
LocalPhansalkarThresholdIntegral() - Constructor for class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThresholdIntegral
 
LocalRenyiEntropyThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold
 
LocalRosinThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRosinThreshold
 
LocalSauvolaThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.localSauvola
This is a modification of Niblack's thresholding method.
LocalSauvolaThreshold() - Constructor for class net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold
 
localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, double) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
localSauvolaThreshold(IterableInterval<BitType>, RandomAccessibleInterval<T>, RectangleShape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
LocalSauvolaThresholdIntegral<T extends RealType<T>> - Class in net.imagej.ops.threshold.localSauvola
Local thresholding algorithm as proposed by Sauvola et al.
LocalSauvolaThresholdIntegral() - Constructor for class net.imagej.ops.threshold.localSauvola.LocalSauvolaThresholdIntegral
 
LocalShanbhagThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalShanbhagThreshold
 
LocalThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.apply
Apply a local thresholding method to an image, optionally using a out of bounds strategy.
LocalThreshold() - Constructor for class net.imagej.ops.threshold.apply.LocalThreshold
 
LocalThresholdIntegral<I extends RealType<I>> - Class in net.imagej.ops.threshold.apply
Apply a local thresholding method to an image using integral images for speed up, optionally using a out of bounds strategy.
LocalThresholdIntegral() - Constructor for class net.imagej.ops.threshold.apply.LocalThresholdIntegral
 
LocalThresholdMethod<T extends RealType<T>> - Class in net.imagej.ops.threshold
LocalThresholdMethod() - Constructor for class net.imagej.ops.threshold.LocalThresholdMethod
 
LocalThresholdMethodHistogram<T extends RealType<T>,O extends BooleanType<O>> - Class in net.imagej.ops.threshold
LocalThresholdMethodHistogram() - Constructor for class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
localTimestamp - Variable in class net.imagej.updater.FileObject
 
LocalTriangleThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalTriangleThreshold
 
LocalYenThreshold() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalYenThreshold
 
log(String) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Logs a message.
log(String) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
log - Variable in class net.imagej.legacy.LegacyCommandline
 
log() - Method in class net.imagej.legacy.LegacyService
Gets the LogService associated with this LegacyService.
log - Variable in class net.imagej.notebook.mime.MIMEConverter
 
log(double) - Method in class net.imagej.ops.math.MathNamespace
 
log(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Log() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Log
 
log(String) - Method in class net.imagej.patcher.LegacyHooks
Logs a message.
log - Variable in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader
 
log - Variable in class net.imagej.ui.swing.updater.DiffFile
 
log - Variable in class net.imagej.ui.swing.updater.SwingUserInterface
 
log(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
log - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
log(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
log - Static variable in class net.imagej.updater.CommandLine
 
log - Variable in class net.imagej.updater.FilesCollection
 
log(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
log - Variable in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
log(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
log10(double) - Method in class net.imagej.ops.math.MathNamespace
 
log10(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Log10() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Log10
 
log2(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Log2() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Log2
 
logClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
LogDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by taking the log of an input Dataset.
LogDataValues() - Constructor for class net.imagej.plugins.commands.assign.LogDataValues
 
logic() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "logic" namespace.
logicalAnd(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
logicalOr(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
LogicNamespace - Class in net.imagej.ops.logic
The logic namespace contains logical (i.e., boolean) operations.
LogicNamespace() - Constructor for class net.imagej.ops.logic.LogicNamespace
 
login(FilesUploader) - Method in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader
 
login(FilesUploader) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
login(FilesUploader) - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader
 
login(FilesUploader) - Method in class net.imagej.updater.AbstractUploader
 
login() - Method in class net.imagej.updater.FilesUploader
 
login(FilesUploader) - Method in interface net.imagej.updater.Uploader
TODO
login(String, String) - Method in class net.imagej.util.MediaWikiClient
 
LogLinearAxis - Class in net.imagej.axis
LogLinearAxis is a CalibratedAxis that scales raw values by the equation y = a + b * ln(c + d*x).
LogLinearAxis() - Constructor for class net.imagej.axis.LogLinearAxis
 
LogLinearAxis(AxisType) - Constructor for class net.imagej.axis.LogLinearAxis
 
LogLinearAxis(AxisType, String) - Constructor for class net.imagej.axis.LogLinearAxis
 
LogLinearAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.LogLinearAxis
 
logOnePlusX(double) - Method in class net.imagej.ops.math.MathNamespace
 
logOnePlusX(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
LogOnePlusX() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.LogOnePlusX
 
logout() - Method in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader
 
logout() - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
logout() - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader
 
logout() - Method in class net.imagej.updater.AbstractUploader
 
logout() - Method in class net.imagej.updater.FilesUploader
 
logout() - Method in interface net.imagej.updater.Uploader
TODO
logout() - Method in class net.imagej.util.MediaWikiClient
 
logService - Variable in class net.imagej.ops.thread.chunker.ChunkerInterleaved
 
logService - Variable in class net.imagej.ops.thread.chunker.DefaultChunker
 
LongAbs() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongAbs
 
LongAdd() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongAdd
 
LongAnd() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongAnd
 
LongComplement() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongComplement
 
LongDivide() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongDivide
 
LongEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongEqual
 
LongGreaterThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongGreaterThan
 
LongGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongGreaterThanOrEqual
 
LongLeftShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongLeftShift
 
LongLessThan() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongLessThan
 
LongLessThanOrEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongLessThanOrEqual
 
LongMax() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongMax
 
LongMin() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongMin
 
LongMultiply() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongMultiply
 
longName() - Method in interface net.imagej.types.DataType
A long name useful for displaying to user.
longName() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
longName() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
longName() - Method in class net.imagej.types.DataType16BitSignedInteger
 
longName() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
longName() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
longName() - Method in class net.imagej.types.DataType32BitSignedFloat
 
longName() - Method in class net.imagej.types.DataType32BitSignedInteger
 
longName() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
longName() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
longName() - Method in class net.imagej.types.DataType64BitSignedFloat
 
longName() - Method in class net.imagej.types.DataType64BitSignedInteger
 
longName() - Method in class net.imagej.types.DataType8BitSignedInteger
 
longName() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
longName() - Method in class net.imagej.types.DataTypeBoolean
 
longName() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
longName() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
longName() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
LongNegate() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongNegate
 
LongNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.LongNotEqual
 
LongOr() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongOr
 
LongRemainder() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongRemainder
 
LongRightShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongRightShift
 
LongSubtract() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongSubtract
 
LongTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.LongTableToResultsTable
 
LongToLongTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverters.LongToLongTypeConverter
 
LongUnsignedRightShift() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongUnsignedRightShift
 
LongXor() - Constructor for class net.imagej.ops.math.PrimitiveMath.LongXor
 
LookupByName - Class in net.imagej.ops.lookup
Implementation of "op" that finds the op by name.
LookupByName() - Constructor for class net.imagej.ops.lookup.LookupByName
 
LookupByType - Class in net.imagej.ops.lookup
Implementation of "op" that finds the op by type.
LookupByType() - Constructor for class net.imagej.ops.lookup.LookupByType
 
lookupDisplay(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap
Gets the ImageDisplay corresponding to the given ImagePlus, or null if there is no existing table entry.
lookupImagePlus(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap
Gets the ImagePlus corresponding to the given ImageDisplay, or null if there is no existing table entry.
loop(O, UnaryInplaceOp<I, O>, int) - Method in interface net.imagej.ops.OpEnvironment
Executes the "loop" operation on the given arguments.
loop(A, A, UnaryComputerOp<A, A>, UnaryOutputFactory<A, A>, int) - Method in interface net.imagej.ops.OpEnvironment
Executes the "loop" operation on the given arguments.
LoopComputer<I> - Interface in net.imagej.ops.loop
Loops over an injected UnaryComputerOp.
LoopInplace<I,O extends I> - Interface in net.imagej.ops.loop
Loops over an injected UnaryInplaceOp.
LoopOp<OP extends Op> - Interface in net.imagej.ops.loop
A typed "loop" operation.
lowerBound(T) - Method in interface net.imagej.types.DataType
Sets a given variable to the lower bound of the underlying NumericType.
lowerBound(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
lowerBound(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
lowerBound(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
 
lowerBound(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
lowerBound(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
lowerBound(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
 
lowerBound(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
 
lowerBound(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
lowerBound(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
lowerBound(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
 
lowerBound(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
 
lowerBound(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
 
lowerBound(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
lowerBound(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
 
lowerBound(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
lowerBound(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
lowerBound(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
lut() - Method in class net.imagej.ImageJ
Gets this application context's LUTService.
LUTFileDragAndDropHandler - Class in net.imagej.ui.dnd
Drag-and-drop handler for ColorTable files.
LUTFileDragAndDropHandler() - Constructor for class net.imagej.ui.dnd.LUTFileDragAndDropHandler
 
LUTFinder - Class in net.imagej.lut
Deprecated.
LUTFinder() - Constructor for class net.imagej.lut.LUTFinder
Deprecated.
 
LUTIOPlugin - Class in net.imagej.lut.io
I/O plugin for ColorTables.
LUTIOPlugin() - Constructor for class net.imagej.lut.io.LUTIOPlugin
 
LUTsChangedEvent - Class in net.imagej.display.event
An event indicating a change in the composition of color tables of a view.
LUTsChangedEvent(DataView) - Constructor for class net.imagej.display.event.LUTsChangedEvent
 
LUTSelector - Class in net.imagej.lut
Applies a ColorTable to an ImageDisplay.
LUTSelector() - Constructor for class net.imagej.lut.LUTSelector
 
LUTService - Interface in net.imagej.lut
The LUTService loads ColorTables (i.e., Look-Up Tables or LUTs) from various data sources.

M

m_background - Variable in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
Boolean value of the background.
m_foreground - Variable in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
Boolean value of the foreground.
m_strategy - Variable in class net.imagej.ops.morphology.thin.AbstractThin
 
m_typedAxis - Variable in class net.imagej.ui.swing.widget.SwingDimSelectionWidget
 
macPrefix - Static variable in class net.imagej.updater.util.UpdaterUtil
 
Macro() - Constructor for class net.imagej.legacy.LegacyCommandline.Macro
 
MacroExtensionAutoCompletionPlugin - Interface in net.imagej.legacy.plugin
MacroExtensionAutoCompletionPlugin This interface must be implemented in order to extend the auto completion list of the Script editor.
MacroExtensionAutoCompletionService - Class in net.imagej.legacy.plugin
This service manages extensions to the auto-complete pull down of the script editor.
MacroExtensionAutoCompletionService() - Constructor for class net.imagej.legacy.plugin.MacroExtensionAutoCompletionService
 
MacroLanguageSupportPlugin - Class in net.imagej.legacy.plugin
LanguageSupportPlugin making basic auto-completion available for IJ macro scripts.
MacroLanguageSupportPlugin() - Constructor for class net.imagej.legacy.plugin.MacroLanguageSupportPlugin
 
MacroPreprocessor - Class in net.imagej.legacy.plugin
Populates the module's input values, when the command is invoked from an ImageJ 1.x macro.
MacroPreprocessor() - Constructor for class net.imagej.legacy.plugin.MacroPreprocessor
 
MacroRecorderExcludedInputs - Class in net.imagej.legacy.plugin
Globally accessible data structure that stores, for each Module instance, the set of "pre-resolved" module inputs.
MacroRecorderPostprocessor - Class in net.imagej.legacy.plugin
Registers the module's final input values with ImageJ 1.x's macro recorder.
MacroRecorderPostprocessor() - Constructor for class net.imagej.legacy.plugin.MacroRecorderPostprocessor
 
MacroRecorderPreprocessor - Class in net.imagej.legacy.plugin
Remembers which inputs are resolved extremely early in the preprocessing chain.
MacroRecorderPreprocessor() - Constructor for class net.imagej.legacy.plugin.MacroRecorderPreprocessor
 
Macros - Class in net.imagej.legacy
Static utility methods for working with ImageJ 1.x macros via its call function.
MAGENTA - Static variable in class net.imagej.display.ColorTables
 
magnitude(IterableInterval<T>, int, int) - Method in class net.imagej.ops.features.zernike.ZernikeNamespace
 
magnitude(O, IterableInterval<T>, int, int) - Method in class net.imagej.ops.features.zernike.ZernikeNamespace
 
main(String...) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Runs ImageJ.main(args) in the legacy environment.
main(String[]) - Static method in class net.imagej.launcher.ClassLauncher
Patch ij.jar and launch the class given as first argument passing on the remaining arguments
main(String[]) - Static method in class net.imagej.launcher.JarLauncher
 
main(String...) - Static method in class net.imagej.legacy.plugin.LegacyAutoImporter
 
Main - Class in net.imagej
Launches ImageJ.
main(String...) - Static method in class net.imagej.Main
 
main(String...) - Static method in class net.imagej.omero.ScriptGenerator
Entry point for generating OMERO script stubs.
main(String...) - Static method in class net.imagej.omero.ScriptRunner
Simple entry point for executing ImageJ modules as scripts.
main(String...) - Static method in class net.imagej.ops.filter.fftSize.NextSmoothNumber
 
Main - Class in net.imagej.ops
Launches a console-based, Ops-driven expression evaluator.
main(String[]) - Static method in class net.imagej.ops.Main
 
main(String...) - Static method in class net.imagej.patcher.JavaAgent
Writes out a minimal java agent .jar file.
main(String...) - Method in class net.imagej.patcher.LegacyEnvironment
Runs ImageJ.main(args) in the legacy environment.
main(String[]) - Static method in class net.imagej.patcher.MemoryProfiler
 
main(String...) - Static method in class net.imagej.patcher.PerformanceProfiler
The main method.
Main - Class in net.imagej.server
Main class for imagej-server.
Main() - Constructor for class net.imagej.server.Main
 
main(String[]) - Static method in class net.imagej.server.Main
 
main(String[]) - Static method in class net.imagej.tensorflow.demo.LabelImage
 
main(String...) - Static method in class net.imagej.tensorflow.ui.TensorFlowLibraryManagementCommand
 
main(String[]) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
main(String[]) - Static method in class net.imagej.ui.swing.SwingColorBar
 
main(String[]) - Static method in class net.imagej.ui.swing.updater.DiffView
A main method for testing.
main(String[]) - Static method in class net.imagej.ui.swing.updater.ImageJUpdater
 
main(String[]) - Static method in class net.imagej.ui.swing.updater.ProgressDialog
 
main(String...) - Static method in class net.imagej.updater.CommandLine
 
main(File, int, String...) - Static method in class net.imagej.updater.CommandLine
 
main(File, int, Progress, String...) - Static method in class net.imagej.updater.CommandLine
 
main(String...) - Static method in class net.imagej.updater.DllFile
 
main(String[]) - Static method in class net.imagej.util.MirrorWebsite
 
MAIN_URL - Static variable in class net.imagej.updater.util.UpdaterUtil
 
mainElongation(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
mainElongation(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
mainElongation(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
mainElongation(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
majorAxis(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
majorAxis(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
MakeBinary<T extends RealType<T>> - Class in net.imagej.plugins.commands.binary
Changes an existing Dataset to a binary mask Dataset using the default thresholding method.
MakeBinary() - Constructor for class net.imagej.plugins.commands.binary.MakeBinary
 
makeCompressionTypes() - Method in class net.imagej.omero.OMEROFormat.Writer
 
makeFilePrivate(String) - Method in class net.imagej.legacy.SingleInstance
 
makeSuffixArray() - Method in class net.imagej.omero.OMEROFormat
 
managedFiles() - Method in class net.imagej.updater.FilesCollection
 
MandelbrotSetImage - Class in net.imagej.plugins.commands.debug
Makes a color image that represents a Mandelbrot set using specified parameters.
MandelbrotSetImage() - Constructor for class net.imagej.plugins.commands.debug.MandelbrotSetImage
 
map() - Method in class net.imagej.display.SourceOptimizedCompositeXYProjector
 
map(Iterable<O>, NullaryComputerOp<O>) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<O>, NullaryComputerOp<O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I>, IterableInterval<O>, UnaryComputerOp<I, O>) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I>, RandomAccessibleInterval<O>, UnaryComputerOp<I, O>) - Static method in class net.imagej.ops.map.Maps
 
map(RandomAccessibleInterval<I>, IterableInterval<O>, UnaryComputerOp<I, O>) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I1>, IterableInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
map(RandomAccessibleInterval<I1>, IterableInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I1>, RandomAccessibleInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
map(RandomAccessibleInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
map(RandomAccessibleInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I>, IterableInterval<O>, UnaryComputerOp<I, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I>, RandomAccessibleInterval<O>, UnaryComputerOp<I, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(RandomAccessibleInterval<I>, IterableInterval<O>, UnaryComputerOp<I, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I1>, IterableInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(RandomAccessibleInterval<I1>, IterableInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(IterableInterval<I1>, RandomAccessibleInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(RandomAccessibleInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(RandomAccessibleInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>, BinaryComputerOp<I1, I2, O>, long, long, long) - Static method in class net.imagej.ops.map.Maps
 
map(Iterable<EO>, NullaryComputerOp<EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, NullaryComputerOp<EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, IterableInterval<EI>, UnaryComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(RandomAccessibleInterval<EO>, IterableInterval<EI>, UnaryComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, RandomAccessibleInterval<EI>, UnaryComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, IterableInterval<EI1>, IterableInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(RandomAccessibleInterval<EO>, IterableInterval<EI1>, IterableInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, IterableInterval<EI1>, RandomAccessibleInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(RandomAccessibleInterval<EO>, IterableInterval<EI1>, RandomAccessibleInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, RandomAccessibleInterval<EI1>, IterableInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(RandomAccessibleInterval<EO>, RandomAccessibleInterval<EI1>, IterableInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, RandomAccessibleInterval<EI1>, RandomAccessibleInterval<EI2>, BinaryComputerOp<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(RandomAccessibleInterval<EI>, UnaryComputerOp<EI, EO>, EO) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(RandomAccessible<EI>, UnaryComputerOp<EI, EO>, EO) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EI>, UnaryComputerOp<EI, EO>, EO) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, UnaryInplaceOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(Iterable<EO>, UnaryInplaceOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, RandomAccessibleInterval<EI>, Shape, UnaryComputerOp<Iterable<EI>, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, RandomAccessibleInterval<EI>, Shape, CenterAwareComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(Iterable<EO>, Iterable<EI>, UnaryComputerOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, IterableInterval<EO>, BinaryInplaceOp<EI, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, IterableInterval<EI2>, BinaryInplace1Op<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(IterableInterval<EO>, RandomAccessibleInterval<EI2>, BinaryInplace1Op<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
map(RandomAccessibleInterval<EO>, IterableInterval<EI2>, BinaryInplace1Op<EI1, EI2, EO>) - Method in interface net.imagej.ops.OpEnvironment
Executes the "map" operation on the given arguments.
MapBinaryComputer<EI1,EI2,EO,OP extends BinaryComputerOp<EI1,EI2,EO>> - Interface in net.imagej.ops.map
Typed interface for "map" BinaryComputerOps.
MapBinaryComputers - Class in net.imagej.ops.map
Auto generated MapBinaryComputers.
MapBinaryComputers.IIAndIIToII<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.IIAndIIToIIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.IIAndIIToRAI<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.IIAndIIToRAIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.IIAndRAIToII<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.IIAndRAIToIIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.IIAndRAIToRAI<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.IIAndRAIToRAIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.RAIAndIIToII<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.RAIAndIIToIIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.RAIAndIIToRAI<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.RAIAndIIToRAIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.RAIAndRAIToII<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryComputers.RAIAndRAIToIIParallel<EI1,EI2,EO> - Class in net.imagej.ops.map
MapBinaryInplace<EI,EO extends EI,OP extends BinaryInplaceOp<EI,EO>> - Interface in net.imagej.ops.map
Typed interface for "map" BinaryInplaceOps.
MapBinaryInplace1<EI1,EI2,EO extends EI1,OP extends BinaryInplace1Op<EI1,EI2,EO>> - Interface in net.imagej.ops.map
Typed interface for "map" BinaryInplace1Ops.
MapBinaryInplace1s - Class in net.imagej.ops.map
Auto generated MapBinaryInplace1s.
MapBinaryInplace1s.IIAndII<EA,EI> - Class in net.imagej.ops.map
MapBinaryInplace1s.IIAndIIParallel<EA,EI> - Class in net.imagej.ops.map
Parallelized MapBinaryInplace1 of IterableInterval with additional input of IterableInterval.
MapBinaryInplace1s.IIAndRAI<EA,EI> - Class in net.imagej.ops.map
MapBinaryInplace1s.IIAndRAIParallel<EA,EI> - Class in net.imagej.ops.map
Parallelized MapBinaryInplace1 of IterableInterval with additional input of RandomAccessibleInterval.
MapBinaryInplace1s.RAIAndII<EA,EI> - Class in net.imagej.ops.map
MapBinaryInplace1s.RAIAndIIParallel<EA,EI> - Class in net.imagej.ops.map
Parallelized MapBinaryInplace1 of RandomAccessibleInterval with additional input of IterableInterval.
MapIIAndIIInplace<EA> - Class in net.imagej.ops.map
MapIIAndIIInplace() - Constructor for class net.imagej.ops.map.MapIIAndIIInplace
 
MapIIAndIIInplaceParallel<EA> - Class in net.imagej.ops.map
MapIIAndIIInplaceParallel() - Constructor for class net.imagej.ops.map.MapIIAndIIInplaceParallel
 
MapIIInplaceParallel<A> - Class in net.imagej.ops.map
Parallelized MapInplace over an IterableInterval.
MapIIInplaceParallel() - Constructor for class net.imagej.ops.map.MapIIInplaceParallel
 
MapInplace<EI,EO extends EI,OP extends UnaryInplaceOp<EI,EO>> - Interface in net.imagej.ops.map
Typed interface for "map" UnaryInplaceOps.
MapIterableInplace<A> - Class in net.imagej.ops.map
A MapInplace over an Iterable.
MapIterableInplace() - Constructor for class net.imagej.ops.map.MapIterableInplace
 
MapIterableToIterable<EI,EO> - Class in net.imagej.ops.map
MapUnaryComputer from Iterable input to Iterable output.
MapIterableToIterable() - Constructor for class net.imagej.ops.map.MapIterableToIterable
 
MapNeighborhood<EI,EO,PI,PO,OP extends Op> - Interface in net.imagej.ops.map.neighborhood
Typed interface for "map" ops that work with neighborhoods.
MapNeighborhoodWithCenter<I,O> - Class in net.imagej.ops.map.neighborhood
Evaluates a CenterAwareComputerOp for each Neighborhood on the input RandomAccessibleInterval and sets the value of the corresponding pixel on the output IterableInterval.
MapNeighborhoodWithCenter() - Constructor for class net.imagej.ops.map.neighborhood.MapNeighborhoodWithCenter
 
MapNullaryComputer<EO,OP extends NullaryComputerOp<EO>> - Interface in net.imagej.ops.map
Typed interface for "map" NullaryComputerOps.
MapNullaryII<O> - Class in net.imagej.ops.map
A paralleled version of MapNullaryComputer over an IterableInterval.
MapNullaryII() - Constructor for class net.imagej.ops.map.MapNullaryII
 
MapNullaryIterable<O> - Class in net.imagej.ops.map
MapNullaryIterable() - Constructor for class net.imagej.ops.map.MapNullaryIterable
 
MapOp<OP extends Op> - Interface in net.imagej.ops.map
Typed interface for "map" ops.
Maps - Class in net.imagej.ops.map
Utility class for MapOps.
MapUnaryComputer<EI,EO,OP extends UnaryComputerOp<EI,EO>> - Interface in net.imagej.ops.map
Typed interface for "map" UnaryComputerOps.
MapUnaryComputers - Class in net.imagej.ops.map
Auto generated MapUnaryComputers.
MapUnaryComputers.IIToII<EI,EO> - Class in net.imagej.ops.map
MapUnaryComputers.IIToIIParallel<EI,EO> - Class in net.imagej.ops.map
MapUnaryComputers.IIToRAI<EI,EO> - Class in net.imagej.ops.map
MapUnaryComputers.IIToRAIParallel<EI,EO> - Class in net.imagej.ops.map
MapUnaryComputers.RAIToII<EI,EO> - Class in net.imagej.ops.map
MapUnaryComputers.RAIToIIParallel<EI,EO> - Class in net.imagej.ops.map
MapView<EI,EO,PI,PO> - Interface in net.imagej.ops.map
A MapUnaryComputer UnaryFunctionOp which converts entries on demand by wrapping in a thin "view" data structure.
MapViewIIToII<EI,EO extends Type<EO>> - Class in net.imagej.ops.map
MapView which converts an IterableInterval between element types.
MapViewIIToII() - Constructor for class net.imagej.ops.map.MapViewIIToII
 
MapViewRAIToRAI<EI,EO extends Type<EO>> - Class in net.imagej.ops.map
MapView which converts an RandomAccessibleInterval between element types.
MapViewRAIToRAI() - Constructor for class net.imagej.ops.map.MapViewRAIToRAI
 
MapViewRandomAccessToRandomAccess<EI,EO extends Type<EO>> - Class in net.imagej.ops.map
MapView which converts a RandomAccessible between element types.
MapViewRandomAccessToRandomAccess() - Constructor for class net.imagej.ops.map.MapViewRandomAccessToRandomAccess
 
marchingCubes(RandomAccessibleInterval<T>) - Static method in class net.imagej.mesh.Meshes
Creates mesh e.g.
marchingCubes(RandomAccessibleInterval<T>, double) - Static method in class net.imagej.mesh.Meshes
Creates mesh e.g.
marchingCubes(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.geom.GeomNamespace
 
marchingCubes(RandomAccessibleInterval<T>, double) - Method in class net.imagej.ops.geom.GeomNamespace
 
marchingCubes(RandomAccessibleInterval<T>, double, VertexInterpolator) - Method in class net.imagej.ops.geom.GeomNamespace
 
markForUpdate(boolean) - Method in class net.imagej.updater.FilesCollection
 
markRemoved() - Method in class net.imagej.updater.FileObject
Deprecated.
markRemoved(FilesCollection) - Method in class net.imagej.updater.FileObject
 
markUploaded() - Method in class net.imagej.updater.FileObject
 
MaskAsRandomAccessibleUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.MaskAsRandomAccessibleUnwrapper
 
maskColor - Variable in class net.imagej.plugins.commands.binary.AbstractBinaryCommand
 
maskColor() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets the color of the mask pixels.
MaskConversionUtil - Class in net.imagej.roi
Utility class for working with MaskPredicates.
MaskIntervalAsRandomAccessibleIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper
 
MaskIntervalToMaskData - Class in net.imagej.omero.roi.mask
Converts a MaskInterval to an OMERO MaskData.
MaskIntervalToMaskData() - Constructor for class net.imagej.omero.roi.mask.MaskIntervalToMaskData
 
MaskIntervalToRAIConverter - Class in net.imagej.roi
Converts a MaskInterval to RandomAccessibleInterval<BoolType>.
MaskIntervalToRAIConverter() - Constructor for class net.imagej.roi.MaskIntervalToRAIConverter
 
maskPixels - Variable in class net.imagej.plugins.commands.binary.AbstractBinaryCommand
 
maskPixels() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets which pixels are considered part of the mask.
MaskPredicateToOverlay - Class in net.imagej.omero.legacy.convert
Converts a MaskPredicate to a Overlay.
MaskPredicateToOverlay() - Constructor for class net.imagej.omero.legacy.convert.MaskPredicateToOverlay
 
MaskPredicateToROITree - Class in net.imagej.omero.legacy.convert
Converts a MaskPredicate to a ROITree.
MaskPredicateToROITree() - Constructor for class net.imagej.omero.legacy.convert.MaskPredicateToROITree
 
MaskPredicateUnwrappers - Class in net.imagej.legacy.convert.roi
Converters which unwrap wrapped MaskPredicates.
MaskPredicateUnwrappers.WrapperToWritableBoxConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped WritableBoxs.
MaskPredicateUnwrappers.WrapperToWritableEllipsoid - Class in net.imagej.legacy.convert.roi
Unwraps wrapped WritableEllipsoids.
MaskPredicateUnwrappers.WrapperToWritableLine - Class in net.imagej.legacy.convert.roi
Unwraps wrapped WritableLines.
MaskPredicateUnwrappers.WrapperToWritablePointMask - Class in net.imagej.legacy.convert.roi
Unwraps wrapped WritablePointMasks.
MaskPredicateUnwrappers.WrapperToWritablePolygon2D - Class in net.imagej.legacy.convert.roi
Unwraps wrapped WritablePolygon2Ds.
MaskPredicateUnwrappers.WrapperToWritablePolyline - Class in net.imagej.legacy.convert.roi
Unwraps wrapped WritablePolylines.
MaskPredicateUnwrappers.WrapperToWritableRealPointCollection - Class in net.imagej.legacy.convert.roi
Unwraps wrapped WritableRealPointCollections.
MaskPredicateWrapper<M extends MaskPredicate<?>> - Interface in net.imagej.legacy.convert.roi
ImageJ 1.x Rois with associated MaskPredicate.
MaskToRAConverter - Class in net.imagej.roi
Converts a Mask to RandomAccessible<BoolType>.
MaskToRAConverter() - Constructor for class net.imagej.roi.MaskToRAConverter
 
match(OpCandidate) - Method in class net.imagej.ops.DefaultOpMatchingService
 
match(OpCandidate) - Method in interface net.imagej.ops.OpMatchingService
Attempts to match the given arguments to the Op described by the specified ModuleInfo.
matcher() - Method in class net.imagej.ops.CustomOpEnvironment
 
matcher() - Method in class net.imagej.ops.DefaultOpService
 
matcher() - Method in interface net.imagej.ops.OpEnvironment
 
matches(FileObject) - Method in class net.imagej.updater.CommandLine.FileFilter
 
matches(FileObject) - Method in interface net.imagej.updater.FilesCollection.Filter
 
matchInfo(List<OpCandidate>, List<OpCandidate>) - Static method in class net.imagej.ops.OpUtils
Gets a string with an analysis of a particular match request failure.
math() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "math" namespace.
MathCommand<I extends ComplexType<I>,O extends ComplexType<O>> - Class in net.imagej.plugins.commands.assign
Base class for previewable math commands.
MathCommand(O) - Constructor for class net.imagej.plugins.commands.assign.MathCommand
 
MathNamespace - Class in net.imagej.ops.math
The math namespace contains arithmetic operations.
MathNamespace() - Constructor for class net.imagej.ops.math.MathNamespace
 
MATLABDatasetConverter - Class in net.imagej.matlab
Converter implementation for converting Dataset to MatlabNumericArray.
MATLABDatasetConverter() - Constructor for class net.imagej.matlab.MATLABDatasetConverter
 
MATLABNumericArrayPreprocessor - Class in net.imagej.matlab
PreprocessorPlugin implementation that converts the active Datasets to a MatlabNumericArray.
MATLABNumericArrayPreprocessor() - Constructor for class net.imagej.matlab.MATLABNumericArrayPreprocessor
 
MatrixOrientation - Interface in net.imagej.ops.image.cooccurrenceMatrix
Simple interface for enums representing the orientation of a Ops.Image.CooccurrenceMatrix.
MatrixOrientation2D - Enum in net.imagej.ops.image.cooccurrenceMatrix
Orientation of a CooccurrenceMatrix2D
MatrixOrientation3D - Enum in net.imagej.ops.image.cooccurrenceMatrix
Orientation of a CooccurrenceMatrix3D
max(int) - Method in class net.imagej.DefaultDataset
 
max(long[]) - Method in class net.imagej.DefaultDataset
 
max(Positionable) - Method in class net.imagej.DefaultDataset
 
max(int) - Method in class net.imagej.display.DefaultImageDisplay
 
max(long[]) - Method in class net.imagej.display.DefaultImageDisplay
 
max(Positionable) - Method in class net.imagej.display.DefaultImageDisplay
 
max(int) - Method in class net.imagej.ImgPlus
 
max(long[]) - Method in class net.imagej.ImgPlus
 
max(Positionable) - Method in class net.imagej.ImgPlus
 
max() - Method in class net.imagej.interval.CombinedRealInterval.MinMax
 
max(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
max(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
max(Positionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
max(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "max" filter operation on the given arguments.
max(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "max" filter operation on the given arguments.
max(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
max(float, float) - Method in class net.imagej.ops.math.MathNamespace
 
max(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
max(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
max(O, I, double) - Method in class net.imagej.ops.math.MathNamespace
 
max(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
max(T, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
max() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo
 
max() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
MAX - Static variable in class net.imagej.plugins.commands.io.NewImage
 
max(int) - Method in class net.imagej.table.ResultsImg
 
max(long[]) - Method in class net.imagej.table.ResultsImg
 
max(Positionable) - Method in class net.imagej.table.ResultsImg
 
MAX_DIMS - Static variable in class net.imagej.ops.filter.bilateral.DefaultBilateral
 
MAX_DIMS - Static variable in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
MAX_FILES_SHOWN - Static variable in interface net.imagej.display.WindowService
 
MaxConstant() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.MaxConstant
 
MaxDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by clamping an input Dataset such that no values are greater than a user defined constant value.
MaxDataValues() - Constructor for class net.imagej.plugins.commands.assign.MaxDataValues
 
MaxEntropy() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.MaxEntropy
 
maxEntropy(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxEntropy(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxEntropy(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxEntropy(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxEntropy(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxEntropy(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
MaxFilterOp<I,O> - Interface in net.imagej.ops.filter.max
A typed "max" filter.
maximumFeret(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
maximumFeretsAngle(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
maximumFeretsAngle(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
maximumFeretsDiameter(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
maximumFeretsDiameter(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
maximumVesselness - Variable in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
MaxLikelihood() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.MaxLikelihood
 
maxLikelihood(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxLikelihood(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxLikelihood(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxLikelihood(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxLikelihood(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxLikelihood(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
maxProbability(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
maxProbability(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
maxTKendallTau(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Method in class net.imagej.ops.coloc.ColocNamespace
 
maxTKendallTau(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, long) - Method in class net.imagej.ops.coloc.ColocNamespace
 
maxValue(T) - Static method in class net.imagej.ops.image.invert.InvertIIInteger
 
maybeAddSeparator() - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
maybeSwitchTool(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
mean(IterableInterval<O>, RandomAccessibleInterval<I>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "mean" filter operation on the given arguments.
mean(IterableInterval<O>, RandomAccessibleInterval<I>, Shape, OutOfBoundsFactory<I, RandomAccessibleInterval<I>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "mean" filter operation on the given arguments.
mean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
mean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
Mean() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Mean
 
mean(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
mean(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
mean(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
mean(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
mean() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo
 
mean() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
MeanFilterOp<I,O> - Interface in net.imagej.ops.filter.mean
A typed "mean" filter.
measure(ImagePlus) - Method in class net.imagej.omero.legacy.LazyOverlay
 
MeasurementDemo - Class in net.imagej.plugins.commands.debug
Shows how to use the MeasurementService.
MeasurementDemo() - Constructor for class net.imagej.plugins.commands.debug.MeasurementDemo
 
median(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "median" filter operation on the given arguments.
median(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "median" filter operation on the given arguments.
median(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
median(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
median() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo
 
median() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
medianElongation(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
medianElongation(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
MedianFilterOp<I,O> - Interface in net.imagej.ops.filter.median
A typed "median" filter.
MediaWikiClient - Class in net.imagej.util
A minimal MediaWiki API client for interacting with the ImageJ Wiki.
MediaWikiClient() - Constructor for class net.imagej.util.MediaWikiClient
 
MediaWikiClient(String) - Constructor for class net.imagej.util.MediaWikiClient
 
MemoryProfiler - Class in net.imagej.patcher
A very simple memory profiler.
MemoryProfiler() - Constructor for class net.imagej.patcher.MemoryProfiler
 
MemoryProfiler(String) - Constructor for class net.imagej.patcher.MemoryProfiler
 
MemoryProfiler(Collection<String>) - Constructor for class net.imagej.patcher.MemoryProfiler
 
MenuProvider - Class in net.imagej.server.utilities
Plugin that provides ImageJ2 menu structure, making use of SciJava MenuService.
MenuProvider() - Constructor for class net.imagej.server.utilities.MenuProvider
 
merge(ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
merge(ImgLabeling<L, I>, ImgLabeling<L, I>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
merge(ImgLabeling<L, I>, ImgLabeling<L, I>, ImgLabeling<L, I>, RandomAccessibleInterval<B>) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
merge(FileObject) - Method in class net.imagej.updater.FileObject
 
MergeLabeling<L,I extends IntegerType<I>,B extends BooleanType<B>> - Class in net.imagej.ops.labeling
Merges the labels of two ImgLabeling within a defined mask (if provided).
MergeLabeling() - Constructor for class net.imagej.ops.labeling.MergeLabeling
 
MergeSort - Class in net.imagej.ops.coloc
Helper class for MaxKendallTau op.
MergeSort(int[], IntComparator) - Constructor for class net.imagej.ops.coloc.MergeSort
 
Mesh - Interface in net.imagej.mesh
3D mesh data structure consisting of triangles and their vertices.
mesh() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
mesh() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
mesh() - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
mesh() - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
mesh() - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
mesh() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
mesh() - Method in interface net.imagej.mesh.Triangle
The mesh to which the triangle belongs.
mesh() - Method in interface net.imagej.mesh.Triangles
The mesh to which the collection of triangles belongs.
mesh() - Method in interface net.imagej.mesh.Vertex
The mesh to which the vertex belongs.
mesh() - Method in interface net.imagej.mesh.Vertices
The mesh to which the collection of vertices belongs.
Meshes - Class in net.imagej.mesh
Utility methods for working with Mesh objects.
Meshes() - Constructor for class net.imagej.mesh.Meshes
 
MeshIOPlugin - Interface in net.imagej.mesh.io
A plugin which reads and/or writes Mesh objects.
MESSAGE - Static variable in class net.imagej.app.QuitProgram
 
messageLogged(LogMessage) - Method in class net.imagej.updater.util.StderrLogService
Deprecated.
 
Metadata() - Constructor for class net.imagej.omero.OMEROFormat.Metadata
 
metadataChanged - Variable in class net.imagej.updater.FileObject
 
MetadataHarmonizer - Class in net.imagej.legacy.translate
Synchronizes metadata bidirectionally between a Dataset and an ImagePlus.
MetadataHarmonizer() - Constructor for class net.imagej.legacy.translate.MetadataHarmonizer
 
MetadataUtil - Class in net.imagej.ops
Utility class that allows to copy Metadata.
Method(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Method
 
methods(Class<?>, String) - Method in class net.imagej.notebook.DefaultNotebookService
 
methods(Object) - Method in interface net.imagej.notebook.NotebookService
Outputs a table of public methods for the given object.
methods(Object, String) - Method in interface net.imagej.notebook.NotebookService
Outputs a table of public methods for the given object.
methods(Class<?>) - Method in interface net.imagej.notebook.NotebookService
Outputs a table of public methods for the given class.
methods(Class<?>, String) - Method in interface net.imagej.notebook.NotebookService
Outputs a table of public methods for the given class.
midpoint() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
MIMEConverter<I,O extends MIMEObject> - Class in net.imagej.notebook.mime
Base class for plugins that convert things to MIMEObjects.
MIMEConverter() - Constructor for class net.imagej.notebook.mime.MIMEConverter
 
MIMEObject - Interface in net.imagej.notebook.mime
An object that knows how to encode itself as some sort of MIME type.
mimeType() - Method in interface net.imagej.notebook.mime.HTMLObject
 
mimeType() - Method in interface net.imagej.notebook.mime.MIMEObject
MIME type of the encoded object.
mimeType() - Method in interface net.imagej.notebook.mime.PNGObject
 
min(int) - Method in class net.imagej.DefaultDataset
 
min(long[]) - Method in class net.imagej.DefaultDataset
 
min(Positionable) - Method in class net.imagej.DefaultDataset
 
min(int) - Method in class net.imagej.display.DefaultImageDisplay
 
min(long[]) - Method in class net.imagej.display.DefaultImageDisplay
 
min(Positionable) - Method in class net.imagej.display.DefaultImageDisplay
 
min(int) - Method in class net.imagej.ImgPlus
 
min(long[]) - Method in class net.imagej.ImgPlus
 
min(Positionable) - Method in class net.imagej.ImgPlus
 
min() - Method in class net.imagej.interval.CombinedRealInterval.MinMax
 
min(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
min(long[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
min(Positionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
min(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "min" filter operation on the given arguments.
min(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "min" filter operation on the given arguments.
min(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
min(float, float) - Method in class net.imagej.ops.math.MathNamespace
 
min(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
min(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
min(O, I, double) - Method in class net.imagej.ops.math.MathNamespace
 
min(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
min(T, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
min() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo
 
min() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
MIN - Static variable in class net.imagej.plugins.commands.io.NewImage
 
min(int) - Method in class net.imagej.table.ResultsImg
 
min(long[]) - Method in class net.imagej.table.ResultsImg
 
min(Positionable) - Method in class net.imagej.table.ResultsImg
 
MIN_DATA - Static variable in class net.imagej.ops.stats.regression.leastSquares.Quadric
Minimum number of points in the input collection needed to fit a quadric equation.
MIN_DIMS - Static variable in class net.imagej.ops.filter.bilateral.DefaultBilateral
 
MIN_DIMS - Static variable in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
MinConstant() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.MinConstant
 
MinDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by clamping an input Dataset such that no values are less than a user defined constant value.
MinDataValues() - Constructor for class net.imagej.plugins.commands.assign.MinDataValues
 
MinError() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.MinError
 
minError(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minError(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minError(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minError(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minError(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minError(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
MinFilterOp<T,V> - Interface in net.imagej.ops.filter.min
A typed "min" filter.
Minimum() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Minimum
 
minimum(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minimum(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minimum(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minimum(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minimum(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minimum(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
minimumFeret(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
minimumFeretsAngle(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
minimumFeretsAngle(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
minimumFeretsDiameter(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
minimumFeretsDiameter(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
minimumVesselness - Variable in class net.imagej.ops.filter.vesselness.DefaultFrangi
 
MinMax() - Constructor for class net.imagej.interval.CombinedRealInterval.MinMax
 
minMax(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
minMaxChanged() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
Called when min or max changes.
MinMaxMethod<T extends Type<T> & Comparable<T>> - Interface in net.imagej.minmax
The MinMaxMethod is used to find the minimum and maximum values of an interval.
minorAxis(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
minorAxis(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
minShowDelay - Variable in class net.imagej.updater.util.StderrProgress
 
minus(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.OMEROText
minus(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
minValue(T) - Static method in class net.imagej.ops.image.invert.InvertII
 
minValue(T) - Static method in class net.imagej.ops.image.invert.InvertIIInteger
 
mirror(String) - Method in class net.imagej.util.MirrorWebsite
 
MirrorWebsite - Class in net.imagej.util
This program mirrors a given website.
MirrorWebsite(String, File, int, long) - Constructor for class net.imagej.util.MirrorWebsite
 
missingSubdirs(ClassLoader, boolean) - Static method in class net.imagej.patcher.EssentialLegacyHooks
Intended for sole use with patches in IJ.
Mixins - Class in net.imagej.server.mixins
Jackson MixIns for some specific types in order to produce better output format.
Mixins.IntegerTypeMixIn<T extends IntegerType<T>> - Class in net.imagej.server.mixins
 
Mixins.ModuleInfoMixIn - Class in net.imagej.server.mixins
 
Mixins.ModuleItemMixIn<T> - Class in net.imagej.server.mixins
 
Mixins.OutOfBoundsFactoryMixIn<T,F> - Class in net.imagej.server.mixins
 
Mixins.RealTypeMixIn<T extends RealType<T>> - Class in net.imagej.server.mixins
 
Mixins.ToStringMixIn - Class in net.imagej.server.mixins
 
Mixins.TypeMixIn - Class in net.imagej.server.mixins
 
mod(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
model() - Method in class net.imagej.tensorflow.CachedModelBundle
 
module(String, Object...) - Method in interface net.imagej.ops.OpEnvironment
Gets the best Op to use for the given operation and arguments, wrapping it as a Module with populated inputs.
module(Class<? extends Op>, Object...) - Method in interface net.imagej.ops.OpEnvironment
Gets the best Op to use for the given operation type and arguments, wrapping it as a Module with populated inputs.
module(Op, Object...) - Method in interface net.imagej.ops.OpEnvironment
Wraps the given Op as a Module, populating its inputs.
ModuleAdapter - Class in net.imagej.omero
Adapts an ImageJ Module (such as a Command) to be usable as an OMERO script, converting information between ImageJ- and OMERO-compatible formats as appropriate.
ModuleAdapter(Context, ModuleInfo, client) - Constructor for class net.imagej.omero.ModuleAdapter
 
ModuleInfoMixIn() - Constructor for class net.imagej.server.mixins.Mixins.ModuleInfoMixIn
 
ModuleItemMixIn() - Constructor for class net.imagej.server.mixins.Mixins.ModuleItemMixIn
 
ModulesResource - Class in net.imagej.server.resources
Server resource that manages module operations.
ModulesResource() - Constructor for class net.imagej.server.resources.ModulesResource
 
ModulesResource.InitializablePreprocessor - Class in net.imagej.server.resources
 
ModuleUtils - Class in net.imagej.omero
Utility class for working with ImageJ modules, particularly Identifiable ones.
moment00(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
moment00(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
moment01(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
moment01(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
moment10(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
moment10(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
moment11(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
moment11(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
moment1AboutMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
moment1AboutMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
moment2AboutMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
moment2AboutMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
moment3AboutMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
moment3AboutMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
moment4AboutMean(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
moment4AboutMean(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
Moments() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Moments
 
moments(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
moments(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
moments(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
moments(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
moments(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
moments(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
MorphologicalThinningStrategy - Class in net.imagej.ops.morphology.thin
A Class implementing a standard morphological thinning.
MorphologicalThinningStrategy() - Constructor for class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy
 
MorphologicalThinningStrategy(boolean) - Constructor for class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy
Create a new morphological thinning strategy.
Morphologies - Class in net.imagej.ops.morphology
Utility class for morphology operations.
morphology() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "morphology" namespace.
MorphologyNamespace - Class in net.imagej.ops.morphology
The morphology namespace contains morphology operations.
MorphologyNamespace() - Constructor for class net.imagej.ops.morphology.MorphologyNamespace
 
mosaic(int[], RandomAccessibleInterval<T>...) - Method in class net.imagej.notebook.DefaultNotebookService
 
mosaic(int[], RandomAccessibleInterval<T>...) - Method in interface net.imagej.notebook.NotebookService
Organizes the given list of images into an N-dimensional mosaic.
mouseClicked(MouseEvent) - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
mouseClicked(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
MouseCursorEvent - Class in net.imagej.display.event
An event indicating a change in the mouse cursor.
MouseCursorEvent(ImageCanvas) - Constructor for class net.imagej.display.event.MouseCursorEvent
 
mouseDown(Display<?>, int, int) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
mouseDown(Display<?>, int, int) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
 
mouseDrag(Display<?>, int, int) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
mouseDrag(Display<?>, int, int) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
 
mouseDragged(MouseEvent) - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
mouseDragged(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
mouseEntered(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
mouseExited(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
mouseMoved(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
mousePressed(MouseEvent) - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
mousePressed(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
mouseReleased(MouseEvent) - Method in class net.imagej.ui.swing.overlay.IJCreationTool
 
mouseReleased(MouseEvent) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
move(int, int) - Method in class net.imagej.display.AbstractDataView
 
move(long, int) - Method in class net.imagej.display.AbstractDataView
 
move(Localizable) - Method in class net.imagej.display.AbstractDataView
 
move(int[]) - Method in class net.imagej.display.AbstractDataView
 
move(long[]) - Method in class net.imagej.display.AbstractDataView
 
move(int, int) - Method in class net.imagej.display.DefaultImageDisplay
 
move(long, int) - Method in class net.imagej.display.DefaultImageDisplay
 
move(Localizable) - Method in class net.imagej.display.DefaultImageDisplay
 
move(int[]) - Method in class net.imagej.display.DefaultImageDisplay
 
move(long[]) - Method in class net.imagej.display.DefaultImageDisplay
 
move(float, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(double, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(RealLocalizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(float[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(double[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(int, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(long, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(Localizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(int[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(long[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
move(double[]) - Method in class net.imagej.overlay.AngleOverlay
 
move(double[]) - Method in class net.imagej.overlay.BinaryMaskOverlay
 
move(double[]) - Method in class net.imagej.overlay.CompositeOverlay
 
move(double[]) - Method in class net.imagej.overlay.EllipseOverlay
 
move(double[]) - Method in class net.imagej.overlay.GeneralPathOverlay
 
move(double[]) - Method in class net.imagej.overlay.LineOverlay
 
move(double[]) - Method in interface net.imagej.overlay.Overlay
 
move(double[]) - Method in class net.imagej.overlay.PointOverlay
 
move(double[]) - Method in class net.imagej.overlay.PolygonOverlay
 
move(double[]) - Method in class net.imagej.overlay.RectangleOverlay
 
move(double[]) - Method in class net.imagej.overlay.TextOverlay
 
move(long, int) - Method in class net.imagej.Position
Moves a given dimension of the Position by a given delta.
move(long[]) - Method in class net.imagej.Position
Moves all dimensions of the Position by given deltas.
move(int, int) - Method in class net.imagej.Position
Moves a given dimension of the Position by a given delta.
move(int[]) - Method in class net.imagej.Position
Moves all dimensions of the Position by given deltas.
move(Localizable) - Method in class net.imagej.Position
Moves all dimensions of the Position by given deltas.
move(double, double) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
moveOutOfTheWay(File) - Static method in class net.imagej.ui.swing.updater.ImageJUpdater
 
moveOutOfTheWay(File) - Static method in class net.imagej.updater.Installer
 
moveTo(long, long) - Method in class net.imagej.DrawingTool
Moves the drawing origin of the current UV plane to the specified coordinates.
moveUpdatedIntoPlace() - Method in class net.imagej.updater.Installer
 
moveUpdatedIntoPlace(File, File) - Method in class net.imagej.updater.Installer
 
MTKT<T extends RealType<T>,U extends RealType<U>> - Class in net.imagej.ops.coloc.maxTKendallTau
This algorithm calculates Maximum Trunctated Kendall Tau (MTKT) from Wang et al.
MTKT() - Constructor for class net.imagej.ops.coloc.maxTKendallTau.MTKT
 
mul(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
mul(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex
Set self to the result of multiplication between two BigComplex values.
mul(BigComplex) - Method in class net.imagej.types.BigComplex
Multiplies another BigComplex value with self.
mul(float) - Method in class net.imagej.types.BigComplex
Multiplies self by a scalar (float) constant.
mul(double) - Method in class net.imagej.types.BigComplex
Multiplies self by a scalar (double) constant.
mul(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
mul(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
mul(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
mul(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
mul(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
mul(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
mul(float) - Method in class net.imagej.types.PreciseFixedFloatType
 
mul(double) - Method in class net.imagej.types.PreciseFixedFloatType
 
mul(BigInteger) - Method in class net.imagej.types.PreciseFixedFloatType
 
mul(BigDecimal) - Method in class net.imagej.types.PreciseFixedFloatType
 
mul(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
mul(float) - Method in class net.imagej.types.UnboundedIntegerType
 
mul(double) - Method in class net.imagej.types.UnboundedIntegerType
 
mul(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType
 
mul(BigDecimal) - Method in class net.imagej.types.UnboundedIntegerType
 
MultidimImage - Class in net.imagej.plugins.commands.debug
A plugin that creates a simple multidimensional image with axes beyond those legacy ImageJ provides.
MultidimImage() - Constructor for class net.imagej.plugins.commands.debug.MultidimImage
 
Multiply() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Multiply
 
Multiply() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
Multiply() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Multiply
 
Multiply() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Multiply
 
Multiply() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
multiply(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(ArrayImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(float, float) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(PlanarImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(T, T) - Method in class net.imagej.ops.math.MathNamespace
 
multiply(T, T, T) - Method in class net.imagej.ops.math.MathNamespace
 
Multiply() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
MultiplyByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyByte
 
MultiplyByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyByte
 
MultiplyByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyByte
 
MultiplyDataValuesBy<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by multiplying an input Dataset by a user defined constant value.
MultiplyDataValuesBy() - Constructor for class net.imagej.plugins.commands.assign.MultiplyDataValuesBy
 
MultiplyDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyDouble
 
MultiplyDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyDouble
 
MultiplyDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyDouble
 
MultiplyFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyFloat
 
MultiplyFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyFloat
 
MultiplyFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyFloat
 
MultiplyInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyInt
 
MultiplyInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyInt
 
MultiplyInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyInt
 
MultiplyLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyLong
 
MultiplyLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyLong
 
MultiplyLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyLong
 
MultiplyShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyShort
 
MultiplyShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyShort
 
MultiplyShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyShort
 
MultiplyUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedByte
 
MultiplyUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedByte
 
MultiplyUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedByte
 
MultiplyUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedInt
 
MultiplyUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedInt
 
MultiplyUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedInt
 
MultiplyUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedLong
 
MultiplyUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedLong
 
MultiplyUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedLong
 
MultiplyUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedShort
 
MultiplyUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedShort
 
MultiplyUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedShort
 
mutate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
mutate(RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.NonCirculantNormalizationFactor
apply the normalization image needed for semi noncirculant model see http://bigwww.epfl.ch/deconvolution/challenge2013/index.html?p=doc_math_rl
mutate(T) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
 
mutate(RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpI
Compute an ND inverse FFT
mutate(A) - Method in class net.imagej.ops.identity.DefaultIdentity
 
mutate(A) - Method in class net.imagej.ops.join.DefaultJoinNInplaces
 
mutate(C) - Method in interface net.imagej.ops.join.Join2Inplaces
 
mutate(T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Not
 
mutate(O) - Method in interface net.imagej.ops.loop.LoopInplace
 
mutate(IterableInterval<A>) - Method in class net.imagej.ops.map.MapIIInplaceParallel
 
mutate(Iterable<A>) - Method in class net.imagej.ops.map.MapIterableInplace
 
mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddByte
 
mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddDouble
 
mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddFloat
 
mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddInt
 
mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddLong
 
mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddShort
 
mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedByte
 
mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedInt
 
mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedLong
 
mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedShort
 
mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideByte
 
mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideDouble
 
mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideFloat
 
mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideInt
 
mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideLong
 
mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideShort
 
mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedByte
 
mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedInt
 
mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedLong
 
mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedShort
 
mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyByte
 
mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyDouble
 
mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyFloat
 
mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyInt
 
mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyLong
 
mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyShort
 
mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedByte
 
mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedInt
 
mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedLong
 
mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedShort
 
mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractByte
 
mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractDouble
 
mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractFloat
 
mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractInt
 
mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractLong
 
mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractShort
 
mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedByte
 
mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedInt
 
mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedLong
 
mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedShort
 
mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddByte
 
mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddDouble
 
mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddFloat
 
mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddInt
 
mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddLong
 
mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddShort
 
mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedByte
 
mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedInt
 
mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedLong
 
mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedShort
 
mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideByte
 
mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideDouble
 
mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideFloat
 
mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideInt
 
mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideLong
 
mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideShort
 
mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedByte
 
mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedInt
 
mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedLong
 
mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedShort
 
mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyByte
 
mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyDouble
 
mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyFloat
 
mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyInt
 
mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyLong
 
mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyShort
 
mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedByte
 
mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedInt
 
mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedLong
 
mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedShort
 
mutate(ArrayImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractByte
 
mutate(ArrayImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractDouble
 
mutate(ArrayImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractFloat
 
mutate(ArrayImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractInt
 
mutate(ArrayImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractLong
 
mutate(ArrayImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractShort
 
mutate(ArrayImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedByte
 
mutate(ArrayImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedInt
 
mutate(ArrayImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedLong
 
mutate(ArrayImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedShort
 
mutate(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
 
mutate(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
mutate(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
mutate(IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
mutate(PlanarImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddByte
 
mutate(PlanarImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddDouble
 
mutate(PlanarImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddFloat
 
mutate(PlanarImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddInt
 
mutate(PlanarImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddLong
 
mutate(PlanarImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddShort
 
mutate(PlanarImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedByte
 
mutate(PlanarImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedInt
 
mutate(PlanarImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedLong
 
mutate(PlanarImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedShort
 
mutate(PlanarImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideByte
 
mutate(PlanarImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideDouble
 
mutate(PlanarImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideFloat
 
mutate(PlanarImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideInt
 
mutate(PlanarImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideLong
 
mutate(PlanarImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideShort
 
mutate(PlanarImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedByte
 
mutate(PlanarImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedInt
 
mutate(PlanarImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedLong
 
mutate(PlanarImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedShort
 
mutate(PlanarImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyByte
 
mutate(PlanarImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyDouble
 
mutate(PlanarImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyFloat
 
mutate(PlanarImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyInt
 
mutate(PlanarImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyLong
 
mutate(PlanarImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyShort
 
mutate(PlanarImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedByte
 
mutate(PlanarImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedInt
 
mutate(PlanarImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedLong
 
mutate(PlanarImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedShort
 
mutate(PlanarImg<ByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractByte
 
mutate(PlanarImg<DoubleType, DoubleArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractDouble
 
mutate(PlanarImg<FloatType, FloatArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractFloat
 
mutate(PlanarImg<IntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractInt
 
mutate(PlanarImg<LongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractLong
 
mutate(PlanarImg<ShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractShort
 
mutate(PlanarImg<UnsignedByteType, ByteArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedByte
 
mutate(PlanarImg<UnsignedIntType, IntArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedInt
 
mutate(PlanarImg<UnsignedLongType, LongArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedLong
 
mutate(PlanarImg<UnsignedShortType, ShortArray>) - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedShort
 
mutate(A) - Method in class net.imagej.ops.special.chain.UIOViaUI
 
mutate(O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI1
 
mutate(O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI1
 
mutate(O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI
 
mutate(O) - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op
 
mutate(O) - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp
Mutates the given input argument in-place.
mutate1(Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.rotate.Rotate3d
 
mutate1(Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.rotate.Rotate3f
 
mutate1(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And
 
mutate1(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or
 
mutate1(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor
 
mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And
 
mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
 
mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
 
mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
 
mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
 
mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
 
mutate1(IterableInterval<EA>, IterableInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndII
 
mutate1(IterableInterval<EA>, IterableInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndIIParallel
 
mutate1(IterableInterval<EA>, RandomAccessibleInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAI
 
mutate1(IterableInterval<EA>, RandomAccessibleInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAIParallel
 
mutate1(RandomAccessibleInterval<EA>, IterableInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndII
 
mutate1(RandomAccessibleInterval<EA>, IterableInterval<EI>) - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndIIParallel
 
mutate1(IterableInterval<EA>, IterableInterval<EA>) - Method in class net.imagej.ops.map.MapIIAndIIInplace
 
mutate1(IterableInterval<EA>, IterableInterval<EA>) - Method in class net.imagej.ops.map.MapIIAndIIInplaceParallel
 
mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
mutate1(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
 
mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
 
mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
mutate1(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
mutate1(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
mutate1(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
mutate1(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
mutate1(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
mutate1(A, A) - Method in class net.imagej.ops.special.chain.BIOViaBI
 
mutate1(O, I2) - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op
Mutates the first argument in-place.
mutate2(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And
 
mutate2(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or
 
mutate2(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor
 
mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And
 
mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
 
mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
 
mutate2(IterableInterval<EA>, IterableInterval<EA>) - Method in class net.imagej.ops.map.MapIIAndIIInplace
 
mutate2(IterableInterval<EA>, IterableInterval<EA>) - Method in class net.imagej.ops.map.MapIIAndIIInplaceParallel
 
mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
mutate2(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
mutate2(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
mutate2(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
mutate2(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
mutate2(T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
mutate2(A, A) - Method in class net.imagej.ops.special.chain.BIOViaBI
 
mutate2(I, O) - Method in interface net.imagej.ops.special.inplace.BinaryInplaceOp
Mutates the second argument in-place.

N

NaiveDoubleMesh - Class in net.imagej.mesh.naive
 
NaiveDoubleMesh() - Constructor for class net.imagej.mesh.naive.NaiveDoubleMesh
 
NaiveDoubleMesh.Triangles - Class in net.imagej.mesh.naive
 
NaiveDoubleMesh.Vertices - Class in net.imagej.mesh.naive
 
NaiveFloatMesh - Class in net.imagej.mesh.naive
 
NaiveFloatMesh() - Constructor for class net.imagej.mesh.naive.NaiveFloatMesh
 
NaiveFloatMesh.Triangles - Class in net.imagej.mesh.naive
 
NaiveFloatMesh.Vertices - Class in net.imagej.mesh.naive
 
NAME - Static variable in class net.imagej.app.ImageJApp
 
NAME - Static variable in class net.imagej.legacy.LegacyImageJApp
 
NAME - Static variable in class net.imagej.legacy.ui.LegacyUI
 
NAME - Static variable in class net.imagej.matlab.ImageJMATLABCommands
 
NAME - Static variable in interface net.imagej.ops.Ops.Coloc.Costes
 
NAME - Static variable in interface net.imagej.ops.Ops.Coloc.ICQ
 
NAME - Static variable in interface net.imagej.ops.Ops.Coloc.KendallTau
 
NAME - Static variable in interface net.imagej.ops.Ops.Coloc.Manders
 
NAME - Static variable in interface net.imagej.ops.Ops.Coloc.MaxTKendallTau
 
NAME - Static variable in interface net.imagej.ops.Ops.Coloc.Pearsons
 
NAME - Static variable in interface net.imagej.ops.Ops.Coloc.PValue
 
NAME - Static variable in interface net.imagej.ops.Ops.Coloc.Spearman
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Bit
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat32
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat64
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Clip
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Copy
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Float32
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Float64
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.ImageType
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Int16
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Int32
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Int64
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Int8
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.NormalizeScale
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Scale
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint12
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint128
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint16
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint2
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint32
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint4
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint64
 
NAME - Static variable in interface net.imagej.ops.Ops.Convert.Uint8
 
NAME - Static variable in interface net.imagej.ops.Ops.Copy.Img
 
NAME - Static variable in interface net.imagej.ops.Ops.Copy.ImgLabeling
 
NAME - Static variable in interface net.imagej.ops.Ops.Copy.ImgPlus
 
NAME - Static variable in interface net.imagej.ops.Ops.Copy.IterableInterval
 
NAME - Static variable in interface net.imagej.ops.Ops.Copy.LabelingMapping
 
NAME - Static variable in interface net.imagej.ops.Ops.Copy.RAI
 
NAME - Static variable in interface net.imagej.ops.Ops.Copy.Type
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.Img
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.ImgFactory
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.ImgLabeling
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.ImgPlus
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.IntegerType
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.Kernel
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.Kernel2ndDerivBiGauss
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelBiGauss
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelDiffraction
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelGabor
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelGauss
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelLog
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.KernelSobel
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.LabelingMapping
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.NativeImg
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.NativeType
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.Object
 
NAME - Static variable in interface net.imagej.ops.Ops.Create.Type
 
NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.Accelerate
 
NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.FirstGuess
 
NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.NormalizationFactor
 
NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.RichardsonLucy
 
NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.RichardsonLucyCorrection
 
NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.RichardsonLucyTV
 
NAME - Static variable in interface net.imagej.ops.Ops.Deconvolve.RichardsonLucyUpdate
 
NAME - Static variable in interface net.imagej.ops.Ops.Eval
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.AddNoise
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.AddPoissonNoise
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.AllPartialDerivatives
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Bilateral
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Convolve
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Correlate
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.CreateFFTOutput
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.DerivativeGauss
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.DoG
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.FFT
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.FFTSize
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.FrangiVesselness
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Gauss
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Hessian
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.IFFT
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.LinearFilter
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Max
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Mean
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Median
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Min
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.PaddingIntervalCentered
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.PaddingIntervalOrigin
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.PadFFTInput
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.PadInput
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.PadShiftFFTKernel
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.PartialDerivative
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Sigma
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Sobel
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Tubeness
 
NAME - Static variable in interface net.imagej.ops.Ops.Filter.Variance
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Boundary
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.BoundaryConvexHull
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.BoundarySize
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.BoundarySizeConvexHull
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.BoundingBox
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Boxivity
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.CenterOfGravity
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Centroid
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Circularity
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Compactness
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Contour
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.ConvexHull
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Convexity
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Eccentricity
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.FeretsAngle
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.FeretsDiameter
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MainElongation
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MajorAxis
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MarchingCubes
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MaximumFeret
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MaximumFeretsAngle
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MaximumFeretsDiameter
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MedianElongation
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MinimumFeret
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MinimumFeretsAngle
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MinimumFeretsDiameter
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.MinorAxis
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Roundness
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.SecondMoment
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Size
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.SizeConvexHull
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.SmallestEnclosingBoundingBox
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Solidity
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Spareness
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Sphericity
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.VertexInterpolator
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.VerticesCount
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.VerticesCountConvexHull
 
NAME - Static variable in interface net.imagej.ops.Ops.Geometric.Voxelization
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ASM
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ClusterPromenence
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ClusterShade
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.Contrast
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.Correlation
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.DifferenceEntropy
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.DifferenceVariance
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.Entropy
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ICM1
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.ICM2
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.IFDM
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.MaxProbability
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.SumAverage
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.SumEntropy
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.SumVariance
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.TextureHomogeneity
 
NAME - Static variable in interface net.imagej.ops.Ops.Haralick.Variance
 
NAME - Static variable in interface net.imagej.ops.Ops.Help
 
NAME - Static variable in interface net.imagej.ops.Ops.HoG.HistogramOfOrientedGradients
 
NAME - Static variable in interface net.imagej.ops.Ops.Identity
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.ASCII
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.CooccurrenceMatrix
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.DistanceTransform
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.Equation
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.Fill
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.Histogram
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.Integral
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.Invert
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.Normalize
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.SquareIntegral
 
NAME - Static variable in interface net.imagej.ops.Ops.Image.Watershed
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment00
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment01
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment02
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment03
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment10
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment11
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment12
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment20
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment21
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.CentralMoment30
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment1
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment2
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment3
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment4
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment5
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment6
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.HuMoment7
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.Moment00
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.Moment01
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.Moment10
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.Moment11
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment02
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment03
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment11
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment12
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment20
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment21
 
NAME - Static variable in interface net.imagej.ops.Ops.ImageMoments.NormalizedCentralMoment30
 
NAME - Static variable in interface net.imagej.ops.Ops.Join
 
NAME - Static variable in interface net.imagej.ops.Ops.Labeling.CCA
 
NAME - Static variable in interface net.imagej.ops.Ops.Labeling.Merge
 
NAME - Static variable in interface net.imagej.ops.Ops.LBP.LBP2D
 
NAME - Static variable in interface net.imagej.ops.Ops.LinAlg.Rotate
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.And
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.Bool
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.Conditional
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.Equal
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThan
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThanOrEqual
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.LessThan
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.LessThanOrEqual
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.Not
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.NotEqual
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.Or
 
NAME - Static variable in interface net.imagej.ops.Ops.Logic.Xor
 
NAME - Static variable in interface net.imagej.ops.Ops.Lookup
 
NAME - Static variable in interface net.imagej.ops.Ops.Loop
 
NAME - Static variable in interface net.imagej.ops.Ops.Map
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Abs
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Add
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.And
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccos
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccosh
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccot
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccoth
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccsc
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arccsch
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arcsec
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arcsech
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arcsin
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arcsinh
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arctan
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Arctanh
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Assign
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Ceil
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Complement
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.ComplexConjugateMultiply
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Cos
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Cosh
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Cot
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Coth
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Csc
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Csch
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.CubeRoot
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Divide
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Exp
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.ExpMinusOne
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Floor
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Gamma
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Invert
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.LeftShift
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Log
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Log10
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Log2
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.LogOnePlusX
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Max
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Min
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Multiply
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.NearestInt
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Negate
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Or
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Power
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.RandomGaussian
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.RandomUniform
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Reciprocal
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Remainder
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.RightShift
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Round
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Sec
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Sech
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Signum
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Sin
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Sinc
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.SincPi
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Sinh
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Sqr
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Sqrt
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Step
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Subtract
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Tan
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Tanh
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Ulp
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.UnsignedRightShift
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Xor
 
NAME - Static variable in interface net.imagej.ops.Ops.Math.Zero
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.BlackTopHat
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Close
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Dilate
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Erode
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ExtractHoles
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.FillHoles
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.FloodFill
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Open
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.Outline
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ThinGuoHall
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ThinHilditch
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ThinMorphological
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.ThinZhangSuen
 
NAME - Static variable in interface net.imagej.ops.Ops.Morphology.TopHat
 
NAME - Static variable in interface net.imagej.ops.Ops.Run
 
NAME - Static variable in interface net.imagej.ops.Ops.Segment.DetectJunctions
 
NAME - Static variable in interface net.imagej.ops.Ops.Segment.DetectRidges
 
NAME - Static variable in interface net.imagej.ops.Ops.Slice
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.GeometricMean
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.HarmonicMean
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.IntegralMean
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.IntegralSum
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.IntegralVariance
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Kurtosis
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.LeastSquares
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Max
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Mean
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Median
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Min
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.MinMax
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Moment1AboutMean
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Moment2AboutMean
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Moment3AboutMean
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Moment4AboutMean
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Percentile
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Quantile
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Size
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Skewness
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.StdDev
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Sum
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.SumOfInverses
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.SumOfLogs
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.SumOfSquares
 
NAME - Static variable in interface net.imagej.ops.Ops.Stats.Variance
 
NAME - Static variable in interface net.imagej.ops.Ops.Tamura.Coarseness
 
NAME - Static variable in interface net.imagej.ops.Ops.Tamura.Contrast
 
NAME - Static variable in interface net.imagej.ops.Ops.Tamura.Directionality
 
NAME - Static variable in interface net.imagej.ops.Ops.Thread.Chunker
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Apply
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Huang
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.IJ1
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Intermodes
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.IsoData
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Li
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalBernsenThreshold
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalContrastThreshold
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalMeanThreshold
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalMedianThreshold
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalMidGreyThreshold
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalNiblackThreshold
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalPhansalkarThreshold
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.LocalSauvolaThreshold
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.MaxEntropy
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.MaxLikelihood
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Mean
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.MinError
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Minimum
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Moments
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Otsu
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Percentile
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.RenyiEntropy
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Rosin
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Shanbhag
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Triangle
 
NAME - Static variable in interface net.imagej.ops.Ops.Threshold.Yen
 
NAME - Static variable in interface net.imagej.ops.Ops.Topology.BoxCount
 
NAME - Static variable in interface net.imagej.ops.Ops.Topology.EulerCharacteristic26N
 
NAME - Static variable in interface net.imagej.ops.Ops.Topology.EulerCharacteristic26NFloating
 
NAME - Static variable in interface net.imagej.ops.Ops.Topology.EulerCorrection
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.AddDimensionView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.CollapseNumericView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.CollapseRealView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.CollapseView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ConcatenateView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.Crop
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.DropSingletonDimensionsView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendBorderView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendMirrorDoubleView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendMirrorSingleView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendPeriodicView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendRandomView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendValueView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ExtendZeroView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.FlatIterableView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.HyperSliceView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.InterpolateView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.IntervalView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.InvertAxisView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.IterableView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.OffsetView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.PermuteCoordinatesInverseView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.PermuteCoordinatesView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.PermuteView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.Project
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.RasterView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.RotateView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ScaleView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ShearView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.StackView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.SubsampleView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.TranslateView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.UnshearView
 
NAME - Static variable in interface net.imagej.ops.Ops.Transform.ZeroMinView
 
NAME - Static variable in interface net.imagej.ops.Ops.Zernike.Magnitude
 
NAME - Static variable in interface net.imagej.ops.Ops.Zernike.Phase
 
name() - Method in class net.imagej.ops.search.OpSearchResult
 
nameChanged() - Method in class net.imagej.lut.LUTSelector
 
NameHarmonizer - Class in net.imagej.legacy.translate
This harmonizer keeps ImagePlus and Display names synchronized
NameHarmonizer() - Constructor for class net.imagej.legacy.translate.NameHarmonizer
 
nameMatches(String) - Method in class net.imagej.ops.OpInfo
Gets whether the given name matches this op.
namespace(Class<NS>) - Method in class net.imagej.ops.CustomOpEnvironment
 
namespace(Class<NS>) - Method in class net.imagej.ops.DefaultOpService
 
Namespace - Interface in net.imagej.ops
A namespace is a collection of ops with related functions.
namespace(Class<NS>) - Method in interface net.imagej.ops.OpEnvironment
Gets the namespace of the given class.
NamespacePreprocessor - Class in net.imagej.ops
PreprocessorPlugin implementation that looks up requested Namespace implementations, obtaining their singleton instance handled by the NamespaceService.
NamespacePreprocessor() - Constructor for class net.imagej.ops.NamespacePreprocessor
 
NamespaceService - Interface in net.imagej.ops
Interface for services that manage Ops Namespaces.
NanBackground - Class in net.imagej.plugins.commands.imglib
Fills the background pixels of an image with NaN.
NanBackground() - Constructor for class net.imagej.plugins.commands.imglib.NanBackground
 
nativeType() - Method in class net.imagej.ops.create.CreateNamespace
 
nativeType(Class<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
nearestInt(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
NearestInt() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.NearestInt
 
needsFeedback(Iterable<Conflicts.Conflict>) - Static method in class net.imagej.updater.Conflicts
Determine whether a list of conflicts requires user feedback.
needUninstall(FileObject, FilesCollection) - Method in class net.imagej.updater.Conflicts
 
needUpload(FileObject, FilesCollection) - Method in class net.imagej.updater.Conflicts
 
neg(Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
negate() - Method in class net.imagej.omero.legacy.text.OMEROText
negate() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
negate(double) - Method in class net.imagej.ops.math.MathNamespace
 
negate(float) - Method in class net.imagej.ops.math.MathNamespace
 
negate(int) - Method in class net.imagej.ops.math.MathNamespace
 
negate(long) - Method in class net.imagej.ops.math.MathNamespace
 
negate(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Negate() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Negate
 
negate() - Method in class net.imagej.types.PreciseFixedFloatType
 
Neighborhood - Interface in net.imagej.plugins.commands.assign.noisereduce
A Neighborhood ties together a set of points (PointSet) and a text description.
Neighborhood3x3Operation - Class in net.imagej.plugins.commands.neigh
Neighborhood3x3Operation - a helper class for 3x3 neighborhood operation plugins such as SmoothDataValues, SharpenDataValues, and FindEdges.
Neighborhood3x3Operation(Dataset, RealRect, Neighborhood3x3Watcher) - Constructor for class net.imagej.plugins.commands.neigh.Neighborhood3x3Operation
 
Neighborhood3x3Watcher - Interface in net.imagej.plugins.commands.neigh
This interface is implemented by classes who want to do a 3x3 neighborhood operation of some sort.
neighborhoodEulerIndex(RandomAccess<B>, long, long, long) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
Determines the LUT index for this 2x2x2 neighborhood
neighTypeString - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
net.imagej - package net.imagej
 
net.imagej.animation - package net.imagej.animation
 
net.imagej.app - package net.imagej.app
 
net.imagej.autoscale - package net.imagej.autoscale
 
net.imagej.axis - package net.imagej.axis
 
net.imagej.batch.input - package net.imagej.batch.input
 
net.imagej.command - package net.imagej.command
 
net.imagej.config - package net.imagej.config
 
net.imagej.convert - package net.imagej.convert
 
net.imagej.display - package net.imagej.display
 
net.imagej.display.event - package net.imagej.display.event
 
net.imagej.display.process - package net.imagej.display.process
 
net.imagej.event - package net.imagej.event
 
net.imagej.interval - package net.imagej.interval
 
net.imagej.launcher - package net.imagej.launcher
 
net.imagej.legacy - package net.imagej.legacy
 
net.imagej.legacy.command - package net.imagej.legacy.command
 
net.imagej.legacy.convert - package net.imagej.legacy.convert
 
net.imagej.legacy.convert.roi - package net.imagej.legacy.convert.roi
 
net.imagej.legacy.convert.roi.box - package net.imagej.legacy.convert.roi.box
 
net.imagej.legacy.convert.roi.ellipsoid - package net.imagej.legacy.convert.roi.ellipsoid
 
net.imagej.legacy.convert.roi.line - package net.imagej.legacy.convert.roi.line
 
net.imagej.legacy.convert.roi.point - package net.imagej.legacy.convert.roi.point
 
net.imagej.legacy.convert.roi.polygon2d - package net.imagej.legacy.convert.roi.polygon2d
 
net.imagej.legacy.convert.roi.polyline - package net.imagej.legacy.convert.roi.polyline
 
net.imagej.legacy.display - package net.imagej.legacy.display
 
net.imagej.legacy.plugin - package net.imagej.legacy.plugin
 
net.imagej.legacy.search - package net.imagej.legacy.search
 
net.imagej.legacy.translate - package net.imagej.legacy.translate
 
net.imagej.legacy.ui - package net.imagej.legacy.ui
 
net.imagej.lut - package net.imagej.lut
 
net.imagej.lut.io - package net.imagej.lut.io
 
net.imagej.matlab - package net.imagej.matlab
 
net.imagej.mesh - package net.imagej.mesh
 
net.imagej.mesh.io - package net.imagej.mesh.io
 
net.imagej.mesh.io.ply - package net.imagej.mesh.io.ply
 
net.imagej.mesh.io.stl - package net.imagej.mesh.io.stl
 
net.imagej.mesh.io.xyz - package net.imagej.mesh.io.xyz
 
net.imagej.mesh.naive - package net.imagej.mesh.naive
 
net.imagej.mesh.nio - package net.imagej.mesh.nio
 
net.imagej.minmax - package net.imagej.minmax
 
net.imagej.notebook - package net.imagej.notebook
 
net.imagej.notebook.chart - package net.imagej.notebook.chart
 
net.imagej.notebook.image - package net.imagej.notebook.image
 
net.imagej.notebook.mime - package net.imagej.notebook.mime
 
net.imagej.notebook.table - package net.imagej.notebook.table
 
net.imagej.omero - package net.imagej.omero
 
net.imagej.omero.commands - package net.imagej.omero.commands
 
net.imagej.omero.legacy - package net.imagej.omero.legacy
 
net.imagej.omero.legacy.convert - package net.imagej.omero.legacy.convert
 
net.imagej.omero.legacy.mask - package net.imagej.omero.legacy.mask
 
net.imagej.omero.legacy.text - package net.imagej.omero.legacy.text
 
net.imagej.omero.roi - package net.imagej.omero.roi
 
net.imagej.omero.roi.ellipse - package net.imagej.omero.roi.ellipse
 
net.imagej.omero.roi.line - package net.imagej.omero.roi.line
 
net.imagej.omero.roi.mask - package net.imagej.omero.roi.mask
 
net.imagej.omero.roi.point - package net.imagej.omero.roi.point
 
net.imagej.omero.roi.polyshape - package net.imagej.omero.roi.polyshape
 
net.imagej.omero.roi.project - package net.imagej.omero.roi.project
 
net.imagej.omero.roi.rectangle - package net.imagej.omero.roi.rectangle
 
net.imagej.omero.roi.transform - package net.imagej.omero.roi.transform
 
net.imagej.ops - package net.imagej.ops
 
net.imagej.ops.bufferfactories - package net.imagej.ops.bufferfactories
 
net.imagej.ops.cached - package net.imagej.ops.cached
 
net.imagej.ops.coloc - package net.imagej.ops.coloc
 
net.imagej.ops.coloc.icq - package net.imagej.ops.coloc.icq
 
net.imagej.ops.coloc.kendallTau - package net.imagej.ops.coloc.kendallTau
 
net.imagej.ops.coloc.maxTKendallTau - package net.imagej.ops.coloc.maxTKendallTau
 
net.imagej.ops.coloc.pearsons - package net.imagej.ops.coloc.pearsons
 
net.imagej.ops.coloc.pValue - package net.imagej.ops.coloc.pValue
 
net.imagej.ops.commands.coloc - package net.imagej.ops.commands.coloc
 
net.imagej.ops.commands.convert - package net.imagej.ops.commands.convert
 
net.imagej.ops.commands.convolve - package net.imagej.ops.commands.convolve
 
net.imagej.ops.commands.filter - package net.imagej.ops.commands.filter
 
net.imagej.ops.commands.morphology - package net.imagej.ops.commands.morphology
 
net.imagej.ops.commands.project - package net.imagej.ops.commands.project
 
net.imagej.ops.commands.threshold - package net.imagej.ops.commands.threshold
 
net.imagej.ops.convert - package net.imagej.ops.convert
 
net.imagej.ops.convert.clip - package net.imagej.ops.convert.clip
 
net.imagej.ops.convert.copy - package net.imagej.ops.convert.copy
 
net.imagej.ops.convert.imageType - package net.imagej.ops.convert.imageType
 
net.imagej.ops.convert.normalizeScale - package net.imagej.ops.convert.normalizeScale
 
net.imagej.ops.convert.scale - package net.imagej.ops.convert.scale
 
net.imagej.ops.copy - package net.imagej.ops.copy
 
net.imagej.ops.create - package net.imagej.ops.create
 
net.imagej.ops.create.img - package net.imagej.ops.create.img
 
net.imagej.ops.create.imgFactory - package net.imagej.ops.create.imgFactory
 
net.imagej.ops.create.imgLabeling - package net.imagej.ops.create.imgLabeling
 
net.imagej.ops.create.imgPlus - package net.imagej.ops.create.imgPlus
 
net.imagej.ops.create.integerType - package net.imagej.ops.create.integerType
 
net.imagej.ops.create.kernel - package net.imagej.ops.create.kernel
 
net.imagej.ops.create.kernelBiGauss - package net.imagej.ops.create.kernelBiGauss
 
net.imagej.ops.create.kernelDiffraction - package net.imagej.ops.create.kernelDiffraction
 
net.imagej.ops.create.kernelGabor - package net.imagej.ops.create.kernelGabor
 
net.imagej.ops.create.kernelGauss - package net.imagej.ops.create.kernelGauss
 
net.imagej.ops.create.kernelLog - package net.imagej.ops.create.kernelLog
 
net.imagej.ops.create.kernelSobel - package net.imagej.ops.create.kernelSobel
 
net.imagej.ops.create.labelingMapping - package net.imagej.ops.create.labelingMapping
 
net.imagej.ops.create.nativeType - package net.imagej.ops.create.nativeType
 
net.imagej.ops.create.object - package net.imagej.ops.create.object
 
net.imagej.ops.deconvolve - package net.imagej.ops.deconvolve
 
net.imagej.ops.deconvolve.accelerate - package net.imagej.ops.deconvolve.accelerate
 
net.imagej.ops.eval - package net.imagej.ops.eval
 
net.imagej.ops.features.haralick - package net.imagej.ops.features.haralick
 
net.imagej.ops.features.haralick.helper - package net.imagej.ops.features.haralick.helper
 
net.imagej.ops.features.hog - package net.imagej.ops.features.hog
 
net.imagej.ops.features.lbp2d - package net.imagej.ops.features.lbp2d
 
net.imagej.ops.features.tamura2d - package net.imagej.ops.features.tamura2d
 
net.imagej.ops.features.zernike - package net.imagej.ops.features.zernike
 
net.imagej.ops.features.zernike.helper - package net.imagej.ops.features.zernike.helper
 
net.imagej.ops.filter - package net.imagej.ops.filter
 
net.imagej.ops.filter.addNoise - package net.imagej.ops.filter.addNoise
 
net.imagej.ops.filter.addPoissonNoise - package net.imagej.ops.filter.addPoissonNoise
 
net.imagej.ops.filter.bilateral - package net.imagej.ops.filter.bilateral
 
net.imagej.ops.filter.convolve - package net.imagej.ops.filter.convolve
 
net.imagej.ops.filter.correlate - package net.imagej.ops.filter.correlate
 
net.imagej.ops.filter.derivative - package net.imagej.ops.filter.derivative
 
net.imagej.ops.filter.derivativeGauss - package net.imagej.ops.filter.derivativeGauss
 
net.imagej.ops.filter.dog - package net.imagej.ops.filter.dog
 
net.imagej.ops.filter.fft - package net.imagej.ops.filter.fft
 
net.imagej.ops.filter.fftSize - package net.imagej.ops.filter.fftSize
 
net.imagej.ops.filter.gauss - package net.imagej.ops.filter.gauss
 
net.imagej.ops.filter.hessian - package net.imagej.ops.filter.hessian
 
net.imagej.ops.filter.ifft - package net.imagej.ops.filter.ifft
 
net.imagej.ops.filter.max - package net.imagej.ops.filter.max
 
net.imagej.ops.filter.mean - package net.imagej.ops.filter.mean
 
net.imagej.ops.filter.median - package net.imagej.ops.filter.median
 
net.imagej.ops.filter.min - package net.imagej.ops.filter.min
 
net.imagej.ops.filter.pad - package net.imagej.ops.filter.pad
 
net.imagej.ops.filter.sigma - package net.imagej.ops.filter.sigma
 
net.imagej.ops.filter.sobel - package net.imagej.ops.filter.sobel
 
net.imagej.ops.filter.tubeness - package net.imagej.ops.filter.tubeness
 
net.imagej.ops.filter.variance - package net.imagej.ops.filter.variance
 
net.imagej.ops.filter.vesselness - package net.imagej.ops.filter.vesselness
 
net.imagej.ops.geom - package net.imagej.ops.geom
 
net.imagej.ops.geom.geom2d - package net.imagej.ops.geom.geom2d
 
net.imagej.ops.geom.geom3d - package net.imagej.ops.geom.geom3d
 
net.imagej.ops.geom.geom3d.mesh - package net.imagej.ops.geom.geom3d.mesh
 
net.imagej.ops.help - package net.imagej.ops.help
 
net.imagej.ops.identity - package net.imagej.ops.identity
 
net.imagej.ops.image - package net.imagej.ops.image
 
net.imagej.ops.image.ascii - package net.imagej.ops.image.ascii
 
net.imagej.ops.image.cooccurrenceMatrix - package net.imagej.ops.image.cooccurrenceMatrix
 
net.imagej.ops.image.distancetransform - package net.imagej.ops.image.distancetransform
 
net.imagej.ops.image.equation - package net.imagej.ops.image.equation
 
net.imagej.ops.image.fill - package net.imagej.ops.image.fill
 
net.imagej.ops.image.histogram - package net.imagej.ops.image.histogram
 
net.imagej.ops.image.integral - package net.imagej.ops.image.integral
 
net.imagej.ops.image.invert - package net.imagej.ops.image.invert
 
net.imagej.ops.image.normalize - package net.imagej.ops.image.normalize
 
net.imagej.ops.image.watershed - package net.imagej.ops.image.watershed
 
net.imagej.ops.imagemoments - package net.imagej.ops.imagemoments
 
net.imagej.ops.imagemoments.centralmoments - package net.imagej.ops.imagemoments.centralmoments
 
net.imagej.ops.imagemoments.hu - package net.imagej.ops.imagemoments.hu
 
net.imagej.ops.imagemoments.moments - package net.imagej.ops.imagemoments.moments
 
net.imagej.ops.imagemoments.normalizedcentralmoments - package net.imagej.ops.imagemoments.normalizedcentralmoments
 
net.imagej.ops.join - package net.imagej.ops.join
 
net.imagej.ops.labeling - package net.imagej.ops.labeling
 
net.imagej.ops.labeling.cca - package net.imagej.ops.labeling.cca
 
net.imagej.ops.linalg - package net.imagej.ops.linalg
 
net.imagej.ops.linalg.rotate - package net.imagej.ops.linalg.rotate
 
net.imagej.ops.logic - package net.imagej.ops.logic
 
net.imagej.ops.lookup - package net.imagej.ops.lookup
 
net.imagej.ops.loop - package net.imagej.ops.loop
 
net.imagej.ops.map - package net.imagej.ops.map
 
net.imagej.ops.map.neighborhood - package net.imagej.ops.map.neighborhood
 
net.imagej.ops.math - package net.imagej.ops.math
 
net.imagej.ops.math.multiply - package net.imagej.ops.math.multiply
 
net.imagej.ops.morphology - package net.imagej.ops.morphology
 
net.imagej.ops.morphology.blackTopHat - package net.imagej.ops.morphology.blackTopHat
 
net.imagej.ops.morphology.close - package net.imagej.ops.morphology.close
 
net.imagej.ops.morphology.dilate - package net.imagej.ops.morphology.dilate
 
net.imagej.ops.morphology.erode - package net.imagej.ops.morphology.erode
 
net.imagej.ops.morphology.extractHoles - package net.imagej.ops.morphology.extractHoles
 
net.imagej.ops.morphology.fillHoles - package net.imagej.ops.morphology.fillHoles
 
net.imagej.ops.morphology.floodFill - package net.imagej.ops.morphology.floodFill
 
net.imagej.ops.morphology.open - package net.imagej.ops.morphology.open
 
net.imagej.ops.morphology.outline - package net.imagej.ops.morphology.outline
 
net.imagej.ops.morphology.thin - package net.imagej.ops.morphology.thin
 
net.imagej.ops.morphology.topHat - package net.imagej.ops.morphology.topHat
 
net.imagej.ops.run - package net.imagej.ops.run
 
net.imagej.ops.search - package net.imagej.ops.search
 
net.imagej.ops.segment - package net.imagej.ops.segment
 
net.imagej.ops.segment.detectJunctions - package net.imagej.ops.segment.detectJunctions
 
net.imagej.ops.segment.detectRidges - package net.imagej.ops.segment.detectRidges
 
net.imagej.ops.slice - package net.imagej.ops.slice
 
net.imagej.ops.special - package net.imagej.ops.special
 
net.imagej.ops.special.chain - package net.imagej.ops.special.chain
 
net.imagej.ops.special.computer - package net.imagej.ops.special.computer
 
net.imagej.ops.special.function - package net.imagej.ops.special.function
 
net.imagej.ops.special.hybrid - package net.imagej.ops.special.hybrid
 
net.imagej.ops.special.inplace - package net.imagej.ops.special.inplace
 
net.imagej.ops.stats - package net.imagej.ops.stats
 
net.imagej.ops.stats.regression.leastSquares - package net.imagej.ops.stats.regression.leastSquares
 
net.imagej.ops.thread - package net.imagej.ops.thread
 
net.imagej.ops.thread.chunker - package net.imagej.ops.thread.chunker
 
net.imagej.ops.threshold - package net.imagej.ops.threshold
 
net.imagej.ops.threshold.apply - package net.imagej.ops.threshold.apply
 
net.imagej.ops.threshold.huang - package net.imagej.ops.threshold.huang
 
net.imagej.ops.threshold.ij1 - package net.imagej.ops.threshold.ij1
 
net.imagej.ops.threshold.intermodes - package net.imagej.ops.threshold.intermodes
 
net.imagej.ops.threshold.isoData - package net.imagej.ops.threshold.isoData
 
net.imagej.ops.threshold.li - package net.imagej.ops.threshold.li
 
net.imagej.ops.threshold.localBernsen - package net.imagej.ops.threshold.localBernsen
 
net.imagej.ops.threshold.localContrast - package net.imagej.ops.threshold.localContrast
 
net.imagej.ops.threshold.localMean - package net.imagej.ops.threshold.localMean
 
net.imagej.ops.threshold.localMedian - package net.imagej.ops.threshold.localMedian
 
net.imagej.ops.threshold.localMidGrey - package net.imagej.ops.threshold.localMidGrey
 
net.imagej.ops.threshold.localNiblack - package net.imagej.ops.threshold.localNiblack
 
net.imagej.ops.threshold.localPhansalkar - package net.imagej.ops.threshold.localPhansalkar
 
net.imagej.ops.threshold.localSauvola - package net.imagej.ops.threshold.localSauvola
 
net.imagej.ops.threshold.maxEntropy - package net.imagej.ops.threshold.maxEntropy
 
net.imagej.ops.threshold.maxLikelihood - package net.imagej.ops.threshold.maxLikelihood
 
net.imagej.ops.threshold.mean - package net.imagej.ops.threshold.mean
 
net.imagej.ops.threshold.minError - package net.imagej.ops.threshold.minError
 
net.imagej.ops.threshold.minimum - package net.imagej.ops.threshold.minimum
 
net.imagej.ops.threshold.moments - package net.imagej.ops.threshold.moments
 
net.imagej.ops.threshold.otsu - package net.imagej.ops.threshold.otsu
 
net.imagej.ops.threshold.percentile - package net.imagej.ops.threshold.percentile
 
net.imagej.ops.threshold.renyiEntropy - package net.imagej.ops.threshold.renyiEntropy
 
net.imagej.ops.threshold.rosin - package net.imagej.ops.threshold.rosin
 
net.imagej.ops.threshold.shanbhag - package net.imagej.ops.threshold.shanbhag
 
net.imagej.ops.threshold.triangle - package net.imagej.ops.threshold.triangle
 
net.imagej.ops.threshold.yen - package net.imagej.ops.threshold.yen
 
net.imagej.ops.topology - package net.imagej.ops.topology
 
net.imagej.ops.topology.eulerCharacteristic - package net.imagej.ops.topology.eulerCharacteristic
 
net.imagej.ops.transform - package net.imagej.ops.transform
 
net.imagej.ops.transform.addDimensionView - package net.imagej.ops.transform.addDimensionView
 
net.imagej.ops.transform.collapseNumericView - package net.imagej.ops.transform.collapseNumericView
 
net.imagej.ops.transform.collapseRealView - package net.imagej.ops.transform.collapseRealView
 
net.imagej.ops.transform.collapseView - package net.imagej.ops.transform.collapseView
 
net.imagej.ops.transform.concatenateView - package net.imagej.ops.transform.concatenateView
 
net.imagej.ops.transform.crop - package net.imagej.ops.transform.crop
 
net.imagej.ops.transform.dropSingletonDimensionsView - package net.imagej.ops.transform.dropSingletonDimensionsView
 
net.imagej.ops.transform.extendBorderView - package net.imagej.ops.transform.extendBorderView
 
net.imagej.ops.transform.extendMirrorDoubleView - package net.imagej.ops.transform.extendMirrorDoubleView
 
net.imagej.ops.transform.extendMirrorSingleView - package net.imagej.ops.transform.extendMirrorSingleView
 
net.imagej.ops.transform.extendPeriodicView - package net.imagej.ops.transform.extendPeriodicView
 
net.imagej.ops.transform.extendRandomView - package net.imagej.ops.transform.extendRandomView
 
net.imagej.ops.transform.extendValueView - package net.imagej.ops.transform.extendValueView
 
net.imagej.ops.transform.extendView - package net.imagej.ops.transform.extendView
 
net.imagej.ops.transform.extendZeroView - package net.imagej.ops.transform.extendZeroView
 
net.imagej.ops.transform.flatIterableView - package net.imagej.ops.transform.flatIterableView
 
net.imagej.ops.transform.hyperSliceView - package net.imagej.ops.transform.hyperSliceView
 
net.imagej.ops.transform.interpolateView - package net.imagej.ops.transform.interpolateView
 
net.imagej.ops.transform.intervalView - package net.imagej.ops.transform.intervalView
 
net.imagej.ops.transform.invertAxisView - package net.imagej.ops.transform.invertAxisView
 
net.imagej.ops.transform.offsetView - package net.imagej.ops.transform.offsetView
 
net.imagej.ops.transform.permuteCoordinatesInverseView - package net.imagej.ops.transform.permuteCoordinatesInverseView
 
net.imagej.ops.transform.permuteCoordinatesView - package net.imagej.ops.transform.permuteCoordinatesView
 
net.imagej.ops.transform.permuteView - package net.imagej.ops.transform.permuteView
 
net.imagej.ops.transform.project - package net.imagej.ops.transform.project
 
net.imagej.ops.transform.rasterView - package net.imagej.ops.transform.rasterView
 
net.imagej.ops.transform.rotateView - package net.imagej.ops.transform.rotateView
 
net.imagej.ops.transform.scaleView - package net.imagej.ops.transform.scaleView
 
net.imagej.ops.transform.shearView - package net.imagej.ops.transform.shearView
 
net.imagej.ops.transform.stackView - package net.imagej.ops.transform.stackView
 
net.imagej.ops.transform.subsampleView - package net.imagej.ops.transform.subsampleView
 
net.imagej.ops.transform.translateView - package net.imagej.ops.transform.translateView
 
net.imagej.ops.transform.unshearView - package net.imagej.ops.transform.unshearView
 
net.imagej.ops.transform.zeroMinView - package net.imagej.ops.transform.zeroMinView
 
net.imagej.options - package net.imagej.options
 
net.imagej.overlay - package net.imagej.overlay
 
net.imagej.patcher - package net.imagej.patcher
 
net.imagej.plugins.commands.animation - package net.imagej.plugins.commands.animation
 
net.imagej.plugins.commands.app - package net.imagej.plugins.commands.app
 
net.imagej.plugins.commands.assign - package net.imagej.plugins.commands.assign
 
net.imagej.plugins.commands.assign.noisereduce - package net.imagej.plugins.commands.assign.noisereduce
 
net.imagej.plugins.commands.axispos - package net.imagej.plugins.commands.axispos
 
net.imagej.plugins.commands.binary - package net.imagej.plugins.commands.binary
 
net.imagej.plugins.commands.calculator - package net.imagej.plugins.commands.calculator
 
net.imagej.plugins.commands.correlate - package net.imagej.plugins.commands.correlate
 
net.imagej.plugins.commands.dataset - package net.imagej.plugins.commands.dataset
 
net.imagej.plugins.commands.debug - package net.imagej.plugins.commands.debug
 
net.imagej.plugins.commands.display - package net.imagej.plugins.commands.display
 
net.imagej.plugins.commands.display.interactive - package net.imagej.plugins.commands.display.interactive
 
net.imagej.plugins.commands.imglib - package net.imagej.plugins.commands.imglib
 
net.imagej.plugins.commands.io - package net.imagej.plugins.commands.io
 
net.imagej.plugins.commands.misc - package net.imagej.plugins.commands.misc
 
net.imagej.plugins.commands.neigh - package net.imagej.plugins.commands.neigh
 
net.imagej.plugins.commands.overlay - package net.imagej.plugins.commands.overlay
 
net.imagej.plugins.commands.restructure - package net.imagej.plugins.commands.restructure
 
net.imagej.plugins.commands.rotate - package net.imagej.plugins.commands.rotate
 
net.imagej.plugins.commands.typechange - package net.imagej.plugins.commands.typechange
 
net.imagej.plugins.commands.upload - package net.imagej.plugins.commands.upload
 
net.imagej.plugins.commands.zoom - package net.imagej.plugins.commands.zoom
 
net.imagej.plugins.tools - package net.imagej.plugins.tools
 
net.imagej.plugins.uploaders.ssh - package net.imagej.plugins.uploaders.ssh
 
net.imagej.plugins.uploaders.webdav - package net.imagej.plugins.uploaders.webdav
 
net.imagej.render - package net.imagej.render
 
net.imagej.roi - package net.imagej.roi
 
net.imagej.sampler - package net.imagej.sampler
 
net.imagej.server - package net.imagej.server
 
net.imagej.server.commands - package net.imagej.server.commands
 
net.imagej.server.console - package net.imagej.server.console
 
net.imagej.server.converter - package net.imagej.server.converter
 
net.imagej.server.external - package net.imagej.server.external
 
net.imagej.server.health - package net.imagej.server.health
 
net.imagej.server.mixins - package net.imagej.server.mixins
 
net.imagej.server.resources - package net.imagej.server.resources
 
net.imagej.server.services - package net.imagej.server.services
 
net.imagej.server.utilities - package net.imagej.server.utilities
 
net.imagej.space - package net.imagej.space
 
net.imagej.table - package net.imagej.table
 
net.imagej.tensorflow - package net.imagej.tensorflow
 
net.imagej.tensorflow.demo - package net.imagej.tensorflow.demo
 
net.imagej.tensorflow.ui - package net.imagej.tensorflow.ui
 
net.imagej.tensorflow.util - package net.imagej.tensorflow.util
 
net.imagej.types - package net.imagej.types
 
net.imagej.ui - package net.imagej.ui
 
net.imagej.ui.awt - package net.imagej.ui.awt
 
net.imagej.ui.dnd - package net.imagej.ui.dnd
 
net.imagej.ui.swing - package net.imagej.ui.swing
 
net.imagej.ui.swing.commands - package net.imagej.ui.swing.commands
 
net.imagej.ui.swing.mdi.viewer - package net.imagej.ui.swing.mdi.viewer
 
net.imagej.ui.swing.overlay - package net.imagej.ui.swing.overlay
 
net.imagej.ui.swing.sdi.viewer - package net.imagej.ui.swing.sdi.viewer
 
net.imagej.ui.swing.tools - package net.imagej.ui.swing.tools
 
net.imagej.ui.swing.updater - package net.imagej.ui.swing.updater
 
net.imagej.ui.swing.viewer.image - package net.imagej.ui.swing.viewer.image
 
net.imagej.ui.swing.widget - package net.imagej.ui.swing.widget
 
net.imagej.ui.viewer.image - package net.imagej.ui.viewer.image
 
net.imagej.units - package net.imagej.units
 
net.imagej.updater - package net.imagej.updater
 
net.imagej.updater.action - package net.imagej.updater.action
 
net.imagej.updater.util - package net.imagej.updater.util
 
net.imagej.util - package net.imagej.util
 
net.imagej.widget - package net.imagej.widget
 
NetrcParser - Class in net.imagej.plugins.uploaders.webdav
A helper class to obtain credentials stored in $HOME/.netrc
NetrcParser() - Constructor for class net.imagej.plugins.uploaders.webdav.NetrcParser
 
NetrcParser(URL) - Constructor for class net.imagej.plugins.uploaders.webdav.NetrcParser
 
NetrcParser.Credentials - Class in net.imagej.plugins.uploaders.webdav
 
neverRemind() - Static method in class net.imagej.updater.UpToDate
 
NewImage<U extends RealType<U> & NativeType<U>> - Class in net.imagej.plugins.commands.io
Creates a new Dataset.
NewImage() - Constructor for class net.imagej.plugins.commands.io.NewImage
 
newImageJ1(boolean) - Method in class net.imagej.patcher.LegacyEnvironment
Initializes a new ImageJ 1.x instance.
newPluginClassLoader(ClassLoader) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Extension point to run after a new PluginClassLoader was initialized.
newPluginClassLoader(ClassLoader) - Method in class net.imagej.patcher.LegacyHooks
Extension point to run after a new PluginClassLoader was initialized.
newText(String) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
newText(String, SimpleAttributeSet) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
next() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
next() - Method in class net.imagej.updater.FilesCollection.FilteredIterator
 
NextPowerOfTwo - Class in net.imagej.ops.filter.fftSize
 
NextPowerOfTwo() - Constructor for class net.imagej.ops.filter.fftSize.NextPowerOfTwo
 
nextPowerOfTwo(long) - Static method in class net.imagej.ops.filter.fftSize.NextPowerOfTwo
 
nextSmooth(int) - Static method in class net.imagej.ops.filter.fftSize.NextSmoothNumber
 
nextSmooth(int, int, int) - Static method in class net.imagej.ops.filter.fftSize.NextSmoothNumber
 
NextSmoothNumber - Class in net.imagej.ops.filter.fftSize
A class to determine the next k-smooth number (i.e.
NextSmoothNumber() - Constructor for class net.imagej.ops.filter.fftSize.NextSmoothNumber
 
noConnection() - Static method in class net.imagej.updater.util.HTTPSUtil
 
NoiseAdder<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by applying random noise to an input Dataset.
NoiseAdder(Dataset, Overlay, Position) - Constructor for class net.imagej.plugins.commands.assign.NoiseAdder
Constructor - takes an input Dataset as the baseline data to compute perturbed values from.
NoiseReductionAdaptiveMedian<U extends RealType<U>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by applying an adaptive median algorithm.
NoiseReductionAdaptiveMedian() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAdaptiveMedian
 
NoiseReductionAlphaTrimmedMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated alpha trimmed mean of neighboring values.
NoiseReductionAlphaTrimmedMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean
 
NoiseReductionContraharmonicMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated contraharmonic mean of neighboring values.
NoiseReductionContraharmonicMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean
 
NoiseReductionGeometricMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated geometric mean of neighboring values.
NoiseReductionGeometricMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionGeometricMean
 
NoiseReductionHarmonicMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated harmonic mean of neighboring values.
NoiseReductionHarmonicMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionHarmonicMean
 
NoiseReductionMax<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated max of neighboring values.
NoiseReductionMax() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMax
 
NoiseReductionMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated arithmetic mean of neighboring values.
NoiseReductionMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMean
 
NoiseReductionMedian<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated median of neighboring values.
NoiseReductionMedian() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMedian
 
NoiseReductionMidpoint<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated midpoint value of neighboring values.
NoiseReductionMidpoint() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMidpoint
 
NoiseReductionMin<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated min of neighboring values.
NoiseReductionMin() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionMin
 
NoiseReductionTrimmedMean<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an image by replacing each pixel with the calculated trimmed mean of neighboring values.
NoiseReductionTrimmedMean() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionTrimmedMean
 
noLineDecoration - Static variable in class net.imagej.options.OptionsOverlay
 
noLineStyle - Static variable in class net.imagej.options.OptionsOverlay
 
NonCirculantFirstGuess<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.deconvolve
Calculate non-circulant first guess.
NonCirculantFirstGuess() - Constructor for class net.imagej.ops.deconvolve.NonCirculantFirstGuess
 
NonCirculantNormalizationFactor<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.deconvolve
Calculate non-circulant normalization factor.
NonCirculantNormalizationFactor() - Constructor for class net.imagej.ops.deconvolve.NonCirculantNormalizationFactor
 
noPluginClassLoader() - Method in class net.imagej.patcher.LegacyEnvironment
Forces ImageJ 1.x to use the same ClassLoader for plugins as for ImageJ 1.x itself.
norm(int) - Static method in class net.imagej.ops.stats.IntegralMean
Computes L1 norm of the position of an IntegralCursor.
normal - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
normal - Variable in class net.imagej.ui.swing.updater.DiffView
 
normal(String) - Method in class net.imagej.ui.swing.updater.DiffView
Add some plain text.
normal(String) - Method in class net.imagej.ui.swing.updater.FileDetails
 
normalCursor - Variable in class net.imagej.ui.swing.updater.DiffFile
 
normalCursor - Variable in class net.imagej.ui.swing.updater.DiffView
 
normalizationFactor(RandomAccessibleInterval<O>, Dimensions, Dimensions, RandomAccessibleInterval<O>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
normalize(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, IterableInterval<T>, T, T, T) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, IterableInterval<T>, T, T, T, T) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, T, T, T) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, T, T, T, T) - Method in class net.imagej.ops.image.ImageNamespace
 
normalize(IterableInterval<T>, T, T, T, T, boolean) - Method in class net.imagej.ops.image.ImageNamespace
 
normalizedCentralMoment02(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment02(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment03(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment03(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment11(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment11(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment12(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment12(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment20(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment20(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment21(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment21(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment30(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
normalizedCentralMoment30(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
NormalizeIIComputer<T extends RealType<T>> - Class in net.imagej.ops.image.normalize
Normalizes an IterableInterval given its minimum and maximum to another range defined by minimum and maximum.
NormalizeIIComputer() - Constructor for class net.imagej.ops.image.normalize.NormalizeIIComputer
 
NormalizeIIFunction<T extends RealType<T>> - Class in net.imagej.ops.image.normalize
Normalizes an IterableInterval given its minimum and maximum to another range defined by minimum and maximum.
NormalizeIIFunction() - Constructor for class net.imagej.ops.image.normalize.NormalizeIIFunction
 
normalizeScale(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace
 
NormalizeScaleRealTypes<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.convert.normalizeScale
Scales input values to their corresponding value in the output type range based on the min/max values of an IterableInterval not the range of the input type.
NormalizeScaleRealTypes() - Constructor for class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
 
normals() - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
normals() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
not(Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
Not() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.Not
 
not(boolean) - Method in class net.imagej.ops.logic.LogicNamespace
 
not(T) - Method in class net.imagej.ops.logic.LogicNamespace
 
not(T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
not(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
 
not(FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection
 
notebook() - Method in class net.imagej.ImageJ
Gets this application context's NotebookService.
NotebookService - Interface in net.imagej.notebook
Interface for services which provide handy methods for working with scientific notebook software (e.g., Beaker Notebook).
NotebookService.ValueScaling - Enum in net.imagej.notebook
Strategy to use for scaling the image intensity values.
NotebookTable - Class in net.imagej.notebook
A table data structure which displays nicely in a notebook.
NotebookTable() - Constructor for class net.imagej.notebook.NotebookTable
 
notEqual(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
notEqual(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace
 
notEqual(int, int) - Method in class net.imagej.ops.logic.LogicNamespace
 
notEqual(long, long) - Method in class net.imagej.ops.logic.LogicNamespace
 
notEqual(float, float) - Method in class net.imagej.ops.logic.LogicNamespace
 
notEqual(double, double) - Method in class net.imagej.ops.logic.LogicNamespace
 
notEqual(T, Object, Object) - Method in class net.imagej.ops.logic.LogicNamespace
 
notHidden() - Method in class net.imagej.updater.FilesCollection
 
Notice(String) - Constructor for class net.imagej.updater.Conflicts.Notice
 
notSerialized(Class<?>) - Method in class net.imagej.server.services.DefaultJsonService
 
now() - Static method in class net.imagej.updater.UpToDate
 
nullary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best NullaryComputerOp implementation for the given types and arguments, populating its inputs.
nullary(OpEnvironment, Class<? extends Op>, O, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best NullaryComputerOp implementation for the given types and arguments, populating its inputs.
nullary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.function.Functions
Gets the best NullaryFunctionOp implementation for the given types and arguments, populating its inputs.
nullaryCF(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best NullaryHybridCF implementation for the given types and arguments, populating its inputs.
nullaryCF(OpEnvironment, Class<? extends Op>, O, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best NullaryHybridCF implementation for the given types and arguments, populating its inputs.
NullaryComputerOp<O> - Interface in net.imagej.ops.special.computer
A nullary computer computes a result, storing it into the specified output reference.
NullaryFunctionOp<O> - Interface in net.imagej.ops.special.function
A nullary function calculates a result, returning it as a new object.
NullaryHybridCF<O> - Interface in net.imagej.ops.special.hybrid
A hybrid nullary operation which can be used as a NullaryComputerOp or NullaryFunctionOp.
NullaryNumericTypeMath - Class in net.imagej.ops.math
Nullary Ops of the math namespace which operate on NumericTypes.
NullaryNumericTypeMath.Assign<T extends Type<T>> - Class in net.imagej.ops.math
Sets the output to a constant.
NullaryNumericTypeMath.Zero<T extends NumericType<T>> - Class in net.imagej.ops.math
Sets the output to zero.
NullaryOp<O> - Interface in net.imagej.ops.special
A nullary operation computes a result in a vacuum, without any input values.
NullaryOutputFactory<O> - Interface in net.imagej.ops.special
Factory which creates a typed output object.
numberfieldIndex - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
numberfieldIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
numberOfElements - Variable in class net.imagej.ops.thread.chunker.AbstractChunker
Total number of elements to be processed
numbers - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
numbers - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
NumberToNumericTypeConverter<I extends Number,O extends NumericType<O>> - Class in net.imagej.server.converter
Abstract class for Converters that convert a Number to a NumericType.
NumberToNumericTypeConverter() - Constructor for class net.imagej.server.converter.NumberToNumericTypeConverter
 
NumberToNumericTypeConverters - Class in net.imagej.server.converter
Converters that convert a Number to a NumericType.
NumberToNumericTypeConverters.DoubleToDoubleTypeConverter - Class in net.imagej.server.converter
 
NumberToNumericTypeConverters.FloatToFloatTypeConverter - Class in net.imagej.server.converter
 
NumberToNumericTypeConverters.IntegerToIntTypeConverter - Class in net.imagej.server.converter
 
NumberToNumericTypeConverters.LongToLongTypeConverter - Class in net.imagej.server.converter
 
numDimensions() - Method in class net.imagej.DefaultDataset
 
numDimensions() - Method in class net.imagej.display.AbstractDataView
 
numDimensions() - Method in class net.imagej.display.DefaultImageDisplay
 
numDimensions() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
 
numDimensions() - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
numDimensions() - Method in interface net.imagej.legacy.convert.roi.IJRoiWrapper
 
numDimensions() - Method in interface net.imagej.mesh.Vertex
 
numDimensions() - Method in class net.imagej.omero.legacy.text.OMEROText
numDimensions() - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
numDimensions() - Method in class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval
 
numDimensions() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
numDimensions() - Method in class net.imagej.overlay.AbstractOverlay
 
numDimensions() - Method in class net.imagej.overlay.AngleOverlay
 
numDimensions() - Method in class net.imagej.overlay.LineOverlay
 
numDimensions() - Method in class net.imagej.overlay.PointOverlay
 
numDimensions() - Method in class net.imagej.Position
Returns the number of dimensions within the Position.
numDimensions() - Method in class net.imagej.space.AbstractAnnotatedSpace
 
numDimensions() - Method in class net.imagej.space.CombinedSpace
 
numDimensions() - Method in class net.imagej.table.ResultsImg
 
numDims() - Method in interface net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation
 
numDims() - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D
 
numDims() - Method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D
 
numElements() - Method in class net.imagej.Extents
Returns the total number of elements spanned by the parent Extents.
numeric(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
 
numeric(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService
Given an ImgPlus of unknown type this returns a typed ImgPlus of type NumericType.
NumericTypeBinaryMath - Class in net.imagej.ops.math
Generated arithmetic ops with ImgLib2 NumericTypes.
NumericTypeBinaryMath.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
Op that adds (+) two NumericType values.
NumericTypeBinaryMath.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
Op that divides (/) two NumericType values.
NumericTypeBinaryMath.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
Op that multiplies (*) two NumericType values.
NumericTypeBinaryMath.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
Op that subtracts (-) two NumericType values.
numGreyLevels - Variable in class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
numVars() - Method in class net.imagej.axis.VariableAxis
Gets the number of variables with assigned values.
numVertices() - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
 
numVertices() - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
nValues - Variable in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
 
nx(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
nx(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
nx() - Method in interface net.imagej.mesh.Triangle
X coordinate of triangle's normal, as a double.
nx(long) - Method in interface net.imagej.mesh.Triangles
X coordinate of triangle's normal, as a double.
nx() - Method in interface net.imagej.mesh.Vertex
X coordinate of vertex normal, as a double.
nx(long) - Method in interface net.imagej.mesh.Vertices
X coordinate of vertex normal, as a double.
nxf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
nxf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
nxf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
nxf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
nxf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
nxf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
nxf() - Method in interface net.imagej.mesh.Triangle
X coordinate of triangle's normal, as a float.
nxf(long) - Method in interface net.imagej.mesh.Triangles
X coordinate of triangle's normal, as a float.
nxf() - Method in interface net.imagej.mesh.Vertex
X coordinate of vertex normal, as a float.
nxf(long) - Method in interface net.imagej.mesh.Vertices
X coordinate of vertex normal, as a float.
ny(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
ny(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
ny() - Method in interface net.imagej.mesh.Triangle
Y coordinate of triangle's normal, as a double.
ny(long) - Method in interface net.imagej.mesh.Triangles
Y coordinate of triangle's normal, as a double.
ny() - Method in interface net.imagej.mesh.Vertex
Y coordinate of vertex normal, as a double.
ny(long) - Method in interface net.imagej.mesh.Vertices
Y coordinate of vertex normal, as a double.
nyf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
nyf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
nyf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
nyf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
nyf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
nyf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
nyf() - Method in interface net.imagej.mesh.Triangle
Y coordinate of triangle's normal, as a float.
nyf(long) - Method in interface net.imagej.mesh.Triangles
Y coordinate of triangle's normal, as a float.
nyf() - Method in interface net.imagej.mesh.Vertex
Y coordinate of vertex normal, as a float.
nyf(long) - Method in interface net.imagej.mesh.Vertices
Y coordinate of vertex normal, as a float.
nz(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
nz(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
nz() - Method in interface net.imagej.mesh.Triangle
Z coordinate of triangle's normal, as a double.
nz(long) - Method in interface net.imagej.mesh.Triangles
Z coordinate of triangle's normal, as a double.
nz() - Method in interface net.imagej.mesh.Vertex
Z coordinate of vertex normal, as a double.
nz(long) - Method in interface net.imagej.mesh.Vertices
Z coordinate of vertex normal, as a double.
nzf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
nzf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
nzf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
nzf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
nzf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
nzf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
nzf() - Method in interface net.imagej.mesh.Triangle
Z coordinate of triangle's normal, as a float.
nzf(long) - Method in interface net.imagej.mesh.Triangles
Z coordinate of triangle's normal, as a float.
nzf() - Method in interface net.imagej.mesh.Vertex
Z coordinate of vertex normal, as a float.
nzf(long) - Method in interface net.imagej.mesh.Vertices
Z coordinate of vertex normal, as a float.

O

object(Class<T>) - Method in class net.imagej.ops.create.CreateNamespace
 
ObjectInfo - Interface in net.imagej.server.services
Wrapper for an Object with some metadata.
ObjectsEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ObjectsEqual
 
ObjectService - Interface in net.imagej.server.services
 
ObjectsNotEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ObjectsNotEqual
 
ObjectsResource - Class in net.imagej.server.resources
Server resource for managing data structures that could not be easily handled with JSON,
ObjectsResource() - Constructor for class net.imagej.server.resources.ObjectsResource
 
offset() - Method in class net.imagej.units.LinearCalibrator
 
offsetOfFirstDiff(File, File) - Static method in class net.imagej.updater.Diff
Determine whether two files' contents differ.
offsetView(RandomAccessible<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace
Translate such that pixel at offset in randomAccessible is at the origin in the resulting view.
offsetView(RandomAccessible<T>, Interval) - Method in class net.imagej.ops.transform.TransformNamespace
Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.
offsetView(RandomAccessible<T>, long[], long...) - Method in class net.imagej.ops.transform.TransformNamespace
Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.
OffsetViewInterval<T> - Class in net.imagej.ops.transform.offsetView
OffsetViewInterval() - Constructor for class net.imagej.ops.transform.offsetView.OffsetViewInterval
 
OffsetViewOriginSize<T> - Class in net.imagej.ops.transform.offsetView
OffsetViewOriginSize() - Constructor for class net.imagej.ops.transform.offsetView.OffsetViewOriginSize
 
ok - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
OMERO_ROI_C - Static variable in class net.imagej.omero.legacy.LegacyOMEROROIService
 
OMERO_ROI_T - Static variable in class net.imagej.omero.legacy.LegacyOMEROROIService
 
OMERO_ROI_Z - Static variable in class net.imagej.omero.legacy.LegacyOMEROROIService
 
OMEROCommand - Class in net.imagej.omero
An ImageJ command for interacting with an OMERO server.
OMEROCommand() - Constructor for class net.imagej.omero.OMEROCommand
 
OMEROEllipse - Interface in net.imagej.omero.roi.ellipse
An Ellipsoid which wraps an OMERO ellipse Roi.
OMEROEllipseToOvalRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi
 
OMEROEllipseUnwrapper - Class in net.imagej.omero.roi.ellipse
Unwraps an OMEROEllipse.
OMEROEllipseUnwrapper() - Constructor for class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper
 
OMEROFormat - Class in net.imagej.omero
A SCIFIO Format which provides read/write access to pixels on an OMERO server.
OMEROFormat() - Constructor for class net.imagej.omero.OMEROFormat
 
OMEROFormat.Checker - Class in net.imagej.omero
 
OMEROFormat.Metadata - Class in net.imagej.omero
 
OMEROFormat.Parser - Class in net.imagej.omero
 
OMEROFormat.Reader - Class in net.imagej.omero
 
OMEROFormat.Writer - Class in net.imagej.omero
 
OMEROLine - Interface in net.imagej.omero.roi.line
A Line which wraps an OMERO line Roi.
OMEROLineToIJLine() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine
 
OMEROLineUnwrapper - Class in net.imagej.omero.roi.line
Unwraps an OMEROLine.
OMEROLineUnwrapper() - Constructor for class net.imagej.omero.roi.line.OMEROLineUnwrapper
 
OMEROLocation - Class in net.imagej.omero
Location pointing at an OMERO server.
OMEROLocation(String, int, String, String) - Constructor for class net.imagej.omero.OMEROLocation
 
OMEROLocation(String, int, String, String, boolean) - Constructor for class net.imagej.omero.OMEROLocation
 
OMEROLocation(String, int, String) - Constructor for class net.imagej.omero.OMEROLocation
 
OMEROLocation(Map<String, Object>) - Constructor for class net.imagej.omero.OMEROLocation
 
OMEROMask - Interface in net.imagej.omero.roi.mask
A RealMaskRealInterval which wraps an OMERO Mask Roi.
OMEROMaskToImageRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi
 
OMEROMaskUnwrapper - Class in net.imagej.omero.roi.mask
Unwraps an OMEROMask.
OMEROMaskUnwrapper() - Constructor for class net.imagej.omero.roi.mask.OMEROMaskUnwrapper
 
OMEROMaskWrapper - Class in net.imagej.omero.legacy.mask
Wraps an OMEROMask as a ImageRoi.
OMEROMaskWrapper(OMEROMask) - Constructor for class net.imagej.omero.legacy.mask.OMEROMaskWrapper
 
OMEROMaskWrapperToOMEROMask() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask
 
OMEROPoint - Interface in net.imagej.omero.roi.point
A PointMask which wraps an OMERO point roi.
OMEROPointToPointRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi
 
OMEROPointUnwrapper - Class in net.imagej.omero.roi.point
Unwraps an OMEROPoint.
OMEROPointUnwrapper() - Constructor for class net.imagej.omero.roi.point.OMEROPointUnwrapper
 
OMEROPolygon - Interface in net.imagej.omero.roi.polyshape
A Polygon2D which wraps an OMERO polygon Roi.
OMEROPolygonToPolygonRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi
 
OMEROPolygonUnwrapper - Class in net.imagej.omero.roi.polyshape
Unwraps an OMEROPolygon.
OMEROPolygonUnwrapper() - Constructor for class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper
 
OMEROPolyline - Interface in net.imagej.omero.roi.polyshape
A Polyline which wraps an OMERO polyline Roi
OMEROPolylineToPolygonRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi
 
OMEROPolylineUnwrapper - Class in net.imagej.omero.roi.polyshape
Unwraps an OMEROPolyline.
OMEROPolylineUnwrapper() - Constructor for class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper
 
OMEROPolyshape<SD extends ShapeData> - Interface in net.imagej.omero.roi.polyshape
A Polyshape which wraps an OMERO ROI.
OMERORealMask<S extends ShapeData> - Interface in net.imagej.omero.roi
RealMask wrapper for OMERO ShapeData object.
OMERORealMaskRealInterval<S extends ShapeData> - Interface in net.imagej.omero.roi
RealMaskRealInterval wrapper for OMERO ShapeData object.
OMERORealMaskToIJROI - Class in net.imagej.omero.legacy.convert
Converters for OMERORealMask to Roi.
OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi<O extends OMERORealMask<?>,R extends Roi> - Class in net.imagej.omero.legacy.convert
Abstract base class for converting OMERORealMask to Roi.
OMERORealMaskToIJROI.OMEROEllipseToOvalRoi - Class in net.imagej.omero.legacy.convert
Converts OMEROEllipse to OvalRoi.
OMERORealMaskToIJROI.OMEROLineToIJLine - Class in net.imagej.omero.legacy.convert
Converts OMEROLine to Line.
OMERORealMaskToIJROI.OMEROMaskToImageRoi - Class in net.imagej.omero.legacy.convert
Converts OMEROMask to ImageRoi.
OMERORealMaskToIJROI.OMEROPointToPointRoi - Class in net.imagej.omero.legacy.convert
Converts OMEROPoint to PointRoi.
OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi - Class in net.imagej.omero.legacy.convert
OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi - Class in net.imagej.omero.legacy.convert
OMERORealMaskToIJROI.OMERORectangleToRoi - Class in net.imagej.omero.legacy.convert
Converts OMERORectangle to Roi.
OMERORealMaskToIJROI.OMEROTextToTextRoi - Class in net.imagej.omero.legacy.convert
Converts OMEROText to TextRoi.
OMERORectangle - Interface in net.imagej.omero.roi.rectangle
A Box which wraps an OMERO rectangle Roi.
OMERORectangleToRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi
 
OMERORectangleUnwrapper - Class in net.imagej.omero.roi.rectangle
Unwraps an OMERORectangle.
OMERORectangleUnwrapper() - Constructor for class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper
 
OMERORef - Enum in net.imagej.omero
 
OMERORefColumn - Class in net.imagej.omero
Wrapper for OMERO reference columns (i.e.
OMERORefColumn(OMERORef) - Constructor for class net.imagej.omero.OMERORefColumn
 
OMERORefColumn(String, OMERORef) - Constructor for class net.imagej.omero.OMERORefColumn
 
OMEROROICollection - Interface in net.imagej.omero.roi
Wraps an OMERO ROIData object.
OMEROROICollectionToROIData - Class in net.imagej.omero.roi
Converts an OMEROROICollection to ROIData.
OMEROROICollectionToROIData() - Constructor for class net.imagej.omero.roi.OMEROROICollectionToROIData
 
OMEROROIElement - Interface in net.imagej.omero.roi
Wraps an OMERORealMask which can be projected into a given space.
OMEROROIElementToROIData - Class in net.imagej.omero.roi
Converts an OMEROROIElement to ROIData.
OMEROROIElementToROIData() - Constructor for class net.imagej.omero.roi.OMEROROIElementToROIData
 
OMEROROIProjector<I extends OMERORealMask<?>,O extends OMERORealMask<?>> - Interface in net.imagej.omero.roi.project
Projects a OMERORealMask into the given space.
OMEROService - Interface in net.imagej.omero
Interface for ImageJ services that manage OMERO data conversion.
OMEROSession - Interface in net.imagej.omero
 
OMEROText - Class in net.imagej.omero.legacy.text
Wraps an OMERO TextData as a RealMaskRealInterval.
OMEROText(TextData) - Constructor for class net.imagej.omero.legacy.text.OMEROText
 
OMEROTextToTextRoi() - Constructor for class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi
 
OMEROTextUnwrapper - Class in net.imagej.omero.legacy.text
Unwraps an OMEROText.
OMEROTextUnwrapper() - Constructor for class net.imagej.omero.legacy.text.OMEROTextUnwrapper
 
OMEROTextWrapper - Class in net.imagej.omero.legacy.text
Wraps an OMEROText as an ImageJ 1.x ROI.
OMEROTextWrapper(OMEROText) - Constructor for class net.imagej.omero.legacy.text.OMEROTextWrapper
 
OMEROToImageJEllipse - Class in net.imagej.omero.roi.ellipse
Converts an OMERO EllipseData to OMEROEllipse.
OMEROToImageJEllipse() - Constructor for class net.imagej.omero.roi.ellipse.OMEROToImageJEllipse
 
OMEROToImageJLine - Class in net.imagej.omero.roi.line
Converts an OMERO LineData to OMEROLine.
OMEROToImageJLine() - Constructor for class net.imagej.omero.roi.line.OMEROToImageJLine
 
OMEROToImageJMask - Class in net.imagej.omero.roi.mask
Converts an OMERO MaskData to OMEROMask.
OMEROToImageJMask() - Constructor for class net.imagej.omero.roi.mask.OMEROToImageJMask
 
OMEROToImageJPoint - Class in net.imagej.omero.roi.point
Converts an OMERO PointData to OMEROPoint.
OMEROToImageJPoint() - Constructor for class net.imagej.omero.roi.point.OMEROToImageJPoint
 
OMEROToImageJPolygon - Class in net.imagej.omero.roi.polyshape
Converts an OMERO PolygonData to Polygon2D.
OMEROToImageJPolygon() - Constructor for class net.imagej.omero.roi.polyshape.OMEROToImageJPolygon
 
OMEROToImageJPolyline - Class in net.imagej.omero.roi.polyshape
Converts an OMERO PolylineData to OMEROPolyline.
OMEROToImageJPolyline() - Constructor for class net.imagej.omero.roi.polyshape.OMEROToImageJPolyline
 
OMEROToImageJRectangle - Class in net.imagej.omero.roi.rectangle
Converts an OMERO RectangleData to OMERORectangle.
OMEROToImageJRectangle() - Constructor for class net.imagej.omero.roi.rectangle.OMEROToImageJRectangle
 
OMEROToImageJText - Class in net.imagej.omero.legacy.text
Converts an OMERO TextData to OMEROText.
OMEROToImageJText() - Constructor for class net.imagej.omero.legacy.text.OMEROToImageJText
 
OMEROUtils - Class in net.imagej.omero
Utility class for working with OMERO data structures.
OMEROZTCProjectedRealMask - Class in net.imagej.omero.roi.project
Represents a RealMask positioned at a specific Z, T, and C.
OMEROZTCProjectedRealMask(RealMask, int, int, int) - Constructor for class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
 
OMEROZTCProjectedRealMaskRealInterval - Class in net.imagej.omero.roi.project
Represents a RealMaskRealInterval positioned at a specific Z, T, and C.
OMEROZTCProjectedRealMaskRealInterval(RealMaskRealInterval, int, int, int) - Constructor for class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskRealInterval
 
OMEROZTCProjectedRealMaskToShapeData - Class in net.imagej.omero.roi.project
Converts an OMEROZTCProjectedRealMask to ShapeData, preserving its Z, T, and C positions.
OMEROZTCProjectedRealMaskToShapeData() - Constructor for class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskToShapeData
 
onDataViewUpdatedEvent(DataViewUpdatedEvent) - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView
 
oneOf(FileObject.Action...) - Method in class net.imagej.updater.FilesCollection
 
oneOf(FileObject.Status...) - Method in class net.imagej.updater.FilesCollection
 
onEvent(KyPressedEvent) - Method in class net.imagej.animation.DefaultAnimationService
Stops animation if ESC key is pressed.
onEvent(DisplayDeletedEvent) - Method in class net.imagej.animation.DefaultAnimationService
Stops animation if display has been deleted.
onEvent(DataRestructuredEvent) - Method in class net.imagej.animation.DefaultAnimationService
Stops animation of displays whose Data have been restructured.
onEvent(DatasetTypeChangedEvent) - Method in class net.imagej.display.DefaultDatasetView
 
onEvent(DatasetRGBChangedEvent) - Method in class net.imagej.display.DefaultDatasetView
 
onEvent(DatasetUpdatedEvent) - Method in class net.imagej.display.DefaultDatasetView
 
onEvent(DataRestructuredEvent) - Method in class net.imagej.display.DefaultImageDisplay
 
onEvent(DataUpdatedEvent) - Method in class net.imagej.display.DefaultImageDisplay
 
onEvent(DisplayDeletedEvent) - Method in class net.imagej.display.DefaultImageDisplay
 
onEvent(DisplayCreatedEvent) - Method in class net.imagej.display.DefaultWindowService
 
onEvent(DisplayActivatedEvent) - Method in class net.imagej.display.DefaultWindowService
 
onEvent(DisplayDeletedEvent) - Method in class net.imagej.display.DefaultWindowService
 
onEvent(KyPressedEvent) - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo
 
onEvent(DisplayDeletedEvent) - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo
 
onEvent(DatasetRestructuredEvent) - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
onEvent(DatasetUpdatedEvent) - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
onEvent(AxisPositionEvent) - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
onEvent(DisplayActivatedEvent) - Method in class net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor
 
onEvent(DataRestructuredEvent) - Method in class net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor
 
onEvent(DisplayActivatedEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool
 
onEvent(DisplayDeletedEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool
 
onEvent(OptionsEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool
 
onEvent(AxisPositionEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool
 
onEvent(MsPressedEvent) - Method in class net.imagej.ui.DefaultImageJUIService
 
onEvent(OverlayCreatedEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
 
onEvent(OverlayDeletedEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
 
onEvent(DataViewSelectionEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
 
onEvent(OverlayRestructuredEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
 
onEvent(OverlayUpdatedEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
 
onEvent(OptionsEvent) - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
onEvent(DataViewSelectedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
onEvent(DataViewDeselectedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
onEvent(ToolActivatedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
onEvent(DisplayDeletedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
onEvent(PanZoomEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
onEvent(MouseCursorEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
onEvent(FigureCreatedEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
When a tool creates an overlay, add the overlay/figure combo to an OverlayFigureView.
onEvent(AxisPositionEvent) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
onEvent(LUTsChangedEvent) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
onEvent(WinActivatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
onEvent(PanZoomEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
onEvent(DatasetRestructuredEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
onEvent(DelayedPositionEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
onEvent(DatasetUpdatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
onEvent(DisplayUpdatedEvent) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
onEvent(UIShownEvent) - Method in class net.imagej.updater.DefaultUpdateService
Checks for updates when the ImageJ UI is first shown.
onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.AcceleratorHandler
 
onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.AxisPositionHandler
 
onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.FocusHandler
 
onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.KonamiHandler
 
onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.PanActivator
 
onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.PanTool
 
onKeyDown(KyPressedEvent) - Method in class net.imagej.plugins.tools.ZoomHandler
 
onKeyUp(KyReleasedEvent) - Method in class net.imagej.plugins.tools.PanActivator
 
onLoad(ClassPool, String) - Method in class net.imagej.patcher.MemoryProfiler
 
onLoad(ClassPool, String) - Method in class net.imagej.patcher.PerformanceProfiler
 
only - Variable in class net.imagej.patcher.MemoryProfiler
 
onMouseClick(MsClickedEvent) - Method in class net.imagej.plugins.tools.AbstractColorTool
 
onMouseClick(MsClickedEvent) - Method in class net.imagej.plugins.tools.ContextMenuHandler
 
onMouseClick(MsClickedEvent) - Method in class net.imagej.plugins.tools.FloodFillTool
Run flood fill when mouse clicked
onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.AbstractLineTool
On mouse down the start point of a series of lines is established.
onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.ContextMenuHandler
 
onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.PanTool
 
onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.SprayCanTool
On mouse down the delay counters are reset.
onMouseDown(MsPressedEvent) - Method in class net.imagej.plugins.tools.ZoomTool
 
onMouseDrag(MsDraggedEvent) - Method in class net.imagej.plugins.tools.AbstractLineTool
On mouse drag a series of lines are drawn.
onMouseDrag(MsDraggedEvent) - Method in class net.imagej.plugins.tools.PanTool
 
onMouseDrag(MsDraggedEvent) - Method in class net.imagej.plugins.tools.SprayCanTool
On mouse drag sometimes a point is drawn.
onMouseMove(MsMovedEvent) - Method in class net.imagej.plugins.tools.PixelProbe
 
onMouseMove(MsMovedEvent) - Method in class net.imagej.plugins.tools.ZoomTool
 
onMouseUp(MsReleasedEvent) - Method in class net.imagej.plugins.tools.AbstractLineTool
On mouse up all resources are freed.
onMouseUp(MsReleasedEvent) - Method in class net.imagej.plugins.tools.ContextMenuHandler
 
onMouseUp(MsReleasedEvent) - Method in class net.imagej.plugins.tools.SprayCanTool
On mouse up all resources are freed.
onMouseUp(MsReleasedEvent) - Method in class net.imagej.plugins.tools.ZoomTool
 
onMouseWheel(MsWheelEvent) - Method in class net.imagej.plugins.tools.AxisPositionHandler
 
onMouseWheel(MsWheelEvent) - Method in class net.imagej.plugins.tools.PanTool
 
onMouseWheel(MsWheelEvent) - Method in class net.imagej.plugins.tools.ZoomTool
 
op() - Method in class net.imagej.ImageJ
Gets this application context's OpService.
op(OpRef) - Method in class net.imagej.ops.cached.CachedOpEnvironment
 
Op - Interface in net.imagej.ops
An op is an operation that computes a result in a deterministic and consistent way.
op(String, Object...) - Method in interface net.imagej.ops.OpEnvironment
Gets the best Op to use for the given operation and arguments, populating its inputs.
op(Class<OP>, Object...) - Method in interface net.imagej.ops.OpEnvironment
Gets the best Op to use for the given operation type and arguments, populating its inputs.
op(OpRef) - Method in interface net.imagej.ops.OpEnvironment
Looks up an op whose constraints are specified by the given OpRef descriptor.
op(List<OpRef>) - Method in interface net.imagej.ops.OpEnvironment
Looks up an op whose constraints are specified by the given list of OpRef descriptor.
op(OpEnvironment, Class<? extends Op>, Class<S>, Class<O>, Object...) - Static method in interface net.imagej.ops.special.SpecialOp
Gets the best SpecialOp implementation for the given types and arguments, populating its inputs.
op(BezierPath, BezierPath, BezierPathFunctions.OP) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
opCall(CommandInfo) - Static method in class net.imagej.ops.OpUtils
Returns a method call for the given Op using its name and the correct count of parameters.
OpCandidate - Class in net.imagej.ops
Container class for a possible operation match between an OpRef and an OpInfo, as computed by the OpMatchingService.
OpCandidate(OpEnvironment, OpRef, OpInfo) - Constructor for class net.imagej.ops.OpCandidate
 
OpCandidate.StatusCode - Enum in net.imagej.ops
 
open(String) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#open instead.
open(String, Object) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#open instead.
open(String) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#open instead.
open(String, Object) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#open instead.
open(File) - Method in class net.imagej.legacy.plugin.DefaultLegacyEditor
 
open(String, int, boolean) - Method in class net.imagej.legacy.plugin.DefaultLegacyOpener
 
open(File) - Method in interface net.imagej.legacy.plugin.LegacyEditor
 
open(String, int, boolean) - Method in interface net.imagej.legacy.plugin.LegacyOpener
Optionally override opening resources via legacy hooks.
open(String) - Method in class net.imagej.lut.io.LUTIOPlugin
 
open(String) - Method in class net.imagej.mesh.io.ply.PLYMeshIO
 
open(String) - Method in class net.imagej.mesh.io.stl.STLMeshIO
 
open(String) - Method in class net.imagej.mesh.io.xyz.XYZPointsIO
 
open(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
open(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
open(String) - Method in class net.imagej.server.external.DefaultTableIOPlugin
 
OPEN_BOUNDARY_TEXT - Static variable in class net.imagej.omero.roi.ROIConverters
 
openAndAddToRecent(File) - Static method in class net.imagej.legacy.IJ1Helper
Opens an image and adds the path to the File>Open Recent menu.
OpenBinaryImage - Class in net.imagej.plugins.commands.binary
Does a morphological open operation on a binary image.
OpenBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.OpenBinaryImage
 
openBox(double[], double[]) - Method in interface net.imagej.roi.ROIService
Creates a WritableBox with open boundary behavior.
openConnection(URL) - Method in class net.imagej.updater.util.UpdaterUtil
Open a connection to a URL.
openDialog(String) - Method in class net.imagej.legacy.IJ1Helper
Uses ImageJ 1.x' OpenDialog
openDialog(String, File) - Method in class net.imagej.legacy.IJ1Helper
Uses ImageJ 1.x' OpenDialog
openEllipsoid(double[], double[]) - Method in interface net.imagej.roi.ROIService
Creates an WritableEllipsoid with open boundary behavior.
OpenFromOMERO - Class in net.imagej.omero.commands
A command to import objects from an OMERO database.
OpenFromOMERO() - Constructor for class net.imagej.omero.commands.OpenFromOMERO
 
openImage(String) - Method in class net.imagej.legacy.IJ1Helper
Opens an image using ImageJ 1.x.
openImage(String, boolean) - Method in class net.imagej.legacy.IJ1Helper
Opens an image using ImageJ 1.x.
openInEditor(String) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Extension point to override ImageJ 1.x' editor.
openInEditor(String) - Method in class net.imagej.legacy.DefaultLegacyHooks
Opens the given path in the registered legacy editor, if any.
openInEditor(String) - Method in class net.imagej.patcher.LegacyHooks
Extension point to override ImageJ 1.x' editor.
OpenOMEROEllipse - Class in net.imagej.omero.roi.ellipse
An OMEROEllipse with open boundary behavior.
OpenOMEROEllipse(EllipseData) - Constructor for class net.imagej.omero.roi.ellipse.OpenOMEROEllipse
 
OpenOMEROPolygon - Class in net.imagej.omero.roi.polyshape
An OMEROPolygon with open boundary behavior.
OpenOMEROPolygon(PolygonData) - Constructor for class net.imagej.omero.roi.polyshape.OpenOMEROPolygon
 
OpenOMERORectangle - Class in net.imagej.omero.roi.rectangle
An OMERORectangle with open boundary behavior.
OpenOMERORectangle(RectangleData) - Constructor for class net.imagej.omero.roi.rectangle.OpenOMERORectangle
 
openPathDirectly(String) - Method in class net.imagej.legacy.IJ1Helper
Opens a path using ImageJ 1.x, bypassing the (javassisted) IJ utility class.
openPixels(OMEROFormat.Metadata) - Method in class net.imagej.omero.DefaultOMEROSession
 
openPixels(OMEROFormat.Metadata) - Method in interface net.imagej.omero.OMEROSession
Obtains a raw pixels store for reading from the pixels associated with the given metadata.
openPlane(int, long, ByteArrayPlane, Interval, SCIFIOConfig) - Method in class net.imagej.omero.OMEROFormat.Reader
 
openPolygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService
Creates a WritablePolygon2D with open boundary behavior.
openPolygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService
Creates a WritablePolygon2D with open boundary behavior.
openScriptInTextEditor(ScriptInfo) - Method in class net.imagej.legacy.LegacyService
 
openSphere(double[], double) - Method in interface net.imagej.roi.ROIService
Creates a WritableSphere with open boundary behavior.
openStream(URL) - Method in class net.imagej.updater.util.UpdaterUtil
Open a stream to a URL.
openSuperEllipsoid(double[], double[], double) - Method in interface net.imagej.roi.ROIService
Creates a WritableSuperEllipsoid with open boundary behavior.
OpenTemplateSearchActionFactory - Class in net.imagej.legacy.search
 
OpenTemplateSearchActionFactory() - Constructor for class net.imagej.legacy.search.OpenTemplateSearchActionFactory
 
openURL(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
openURL(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
openURL(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
openURL(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
OpEnvironment - Interface in net.imagej.ops
An op environment is the top-level entry point into op execution.
OpEnvironmentPreprocessor - Class in net.imagej.ops
A preprocessor plugin that injects an OpEnvironment into Op instances.
OpEnvironmentPreprocessor() - Constructor for class net.imagej.ops.OpEnvironmentPreprocessor
 
openWebPage() - Method in class net.imagej.options.OptionsCompatibility
 
openWebPage() - Method in class net.imagej.plugins.commands.assign.EquationDataValues
 
openWebPage() - Method in class net.imagej.plugins.commands.debug.PointSetDemo
 
operator() - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval
 
OpEvaluator - Class in net.imagej.ops.eval
A Parsington Evaluator using available Ops.
OpEvaluator(OpEnvironment) - Constructor for class net.imagej.ops.eval.OpEvaluator
 
opInfo() - Method in class net.imagej.ops.OpCandidate
Gets the OpInfo metadata describing the op to match against.
OpInfo - Class in net.imagej.ops
Metadata about a particular Op implementation.
OpInfo(CommandInfo) - Constructor for class net.imagej.ops.OpInfo
 
OpInfo(Class<? extends Op>) - Constructor for class net.imagej.ops.OpInfo
 
OpMatchingService - Interface in net.imagej.ops
Interface for services that find Ops which match an OpRef.
OpMatchingUtil - Class in net.imagej.ops
Utility class for OpMatchingService.
OpMethod - Annotation Type in net.imagej.ops
Annotation for methods that delegate to a specific Op implementation.
OpRef - Class in net.imagej.ops
Data structure which identifies an op by name and/or type(s) and/or argument type(s), along with a list of input arguments.
OpRef(String, Collection<? extends Type>, Collection<? extends Type>, Object...) - Constructor for class net.imagej.ops.OpRef
Creates a new op reference.
ops() - Method in class net.imagej.ops.AbstractNamespace
 
ops() - Method in class net.imagej.ops.AbstractOp
 
ops() - Method in interface net.imagej.ops.Environmental
Gets the op execution environment.
ops() - Method in class net.imagej.ops.OpCandidate
Gets the op execution environment of the desired match.
ops() - Method in interface net.imagej.ops.OpEnvironment
Gets the fully qualified names of all available operations.
Ops - Class in net.imagej.ops
Static utility class containing built-in op interfaces.
Ops.Coloc - Class in net.imagej.ops
Built-in op interfaces of the coloc namespace.
Ops.Coloc.Costes - Interface in net.imagej.ops
Base interface for "costes" operations.
Ops.Coloc.ICQ - Interface in net.imagej.ops
Base interface for "icq" operations.
Ops.Coloc.KendallTau - Interface in net.imagej.ops
Base interface for "kendallTau" operations.
Ops.Coloc.Manders - Interface in net.imagej.ops
Base interface for "manders" operations.
Ops.Coloc.MaxTKendallTau - Interface in net.imagej.ops
Base interface for "maxTKendallTau" operations.
Ops.Coloc.Pearsons - Interface in net.imagej.ops
Base interface for "pearsons" operations.
Ops.Coloc.PValue - Interface in net.imagej.ops
Base interface for "pValue" operations.
Ops.Coloc.Spearman - Interface in net.imagej.ops
Base interface for "spearman" operations.
Ops.Convert - Class in net.imagej.ops
Built-in op interfaces of the convert namespace.
Ops.Convert.Bit - Interface in net.imagej.ops
Base interface for "bit" operations.
Ops.Convert.Cfloat32 - Interface in net.imagej.ops
Base interface for "cfloat32" operations.
Ops.Convert.Cfloat64 - Interface in net.imagej.ops
Base interface for "cfloat64" operations.
Ops.Convert.Clip - Interface in net.imagej.ops
Base interface for "clip" operations.
Ops.Convert.Copy - Interface in net.imagej.ops
Base interface for "copy" operations.
Ops.Convert.Float32 - Interface in net.imagej.ops
Base interface for "float32" operations.
Ops.Convert.Float64 - Interface in net.imagej.ops
Base interface for "float64" operations.
Ops.Convert.ImageType - Interface in net.imagej.ops
Base interface for "imageType" operations.
Ops.Convert.Int16 - Interface in net.imagej.ops
Base interface for "int16" operations.
Ops.Convert.Int32 - Interface in net.imagej.ops
Base interface for "int32" operations.
Ops.Convert.Int64 - Interface in net.imagej.ops
Base interface for "int64" operations.
Ops.Convert.Int8 - Interface in net.imagej.ops
Base interface for "int8" operations.
Ops.Convert.NormalizeScale - Interface in net.imagej.ops
Base interface for "normalizeScale" operations.
Ops.Convert.Scale - Interface in net.imagej.ops
Base interface for "scale" operations.
Ops.Convert.Uint12 - Interface in net.imagej.ops
Base interface for "uint12" operations.
Ops.Convert.Uint128 - Interface in net.imagej.ops
Base interface for "uint128" operations.
Ops.Convert.Uint16 - Interface in net.imagej.ops
Base interface for "uint16" operations.
Ops.Convert.Uint2 - Interface in net.imagej.ops
Base interface for "uint2" operations.
Ops.Convert.Uint32 - Interface in net.imagej.ops
Base interface for "uint32" operations.
Ops.Convert.Uint4 - Interface in net.imagej.ops
Base interface for "uint4" operations.
Ops.Convert.Uint64 - Interface in net.imagej.ops
Base interface for "uint64" operations.
Ops.Convert.Uint8 - Interface in net.imagej.ops
Base interface for "uint8" operations.
Ops.Copy - Class in net.imagej.ops
Built-in op interfaces of the copy namespace.
Ops.Copy.Img - Interface in net.imagej.ops
Base interface for "img" operations.
Ops.Copy.ImgLabeling - Interface in net.imagej.ops
Base interface for "imgLabeling" operations.
Ops.Copy.ImgPlus - Interface in net.imagej.ops
Base interface for "imgPlus" operations.
Ops.Copy.IterableInterval - Interface in net.imagej.ops
Base interface for "iterableInterval" operations.
Ops.Copy.LabelingMapping - Interface in net.imagej.ops
Base interface for "labelingMapping" operations.
Ops.Copy.RAI - Interface in net.imagej.ops
Base interface for "rai" operations.
Ops.Copy.Type - Interface in net.imagej.ops
Base interface for "type" operations.
Ops.Create - Class in net.imagej.ops
Built-in op interfaces of the create namespace.
Ops.Create.Img - Interface in net.imagej.ops
Base interface for "img" operations.
Ops.Create.ImgFactory - Interface in net.imagej.ops
Base interface for "imgFactory" operations.
Ops.Create.ImgLabeling - Interface in net.imagej.ops
Base interface for "imgLabeling" operations.
Ops.Create.ImgPlus - Interface in net.imagej.ops
Base interface for "imgPlus" operations.
Ops.Create.IntegerType - Interface in net.imagej.ops
Base interface for "integerType" operations.
Ops.Create.Kernel - Interface in net.imagej.ops
Base interface for "kernel" operations.
Ops.Create.Kernel2ndDerivBiGauss - Interface in net.imagej.ops
Base interface for "kernel2ndDerivBiGauss" operations.
Ops.Create.KernelBiGauss - Interface in net.imagej.ops
Base interface for "kernelBiGauss" operations.
Ops.Create.KernelDiffraction - Interface in net.imagej.ops
Base interface for "kernelDiffraction" operations.
Ops.Create.KernelGabor - Interface in net.imagej.ops
Base interface for "kernelGabor" operations.
Ops.Create.KernelGauss - Interface in net.imagej.ops
Base interface for "kernelGauss" operations.
Ops.Create.KernelLog - Interface in net.imagej.ops
Base interface for "kernelLog" operations.
Ops.Create.KernelSobel - Interface in net.imagej.ops
Base interface for "kernelSobel" operations.
Ops.Create.LabelingMapping - Interface in net.imagej.ops
Base interface for "labelingMapping" operations.
Ops.Create.NativeImg - Interface in net.imagej.ops
Base interface for "nativeImg" operations.
Ops.Create.NativeType - Interface in net.imagej.ops
Base interface for "nativeType" operations.
Ops.Create.Object - Interface in net.imagej.ops
Base interface for "object" operations.
Ops.Create.Type - Interface in net.imagej.ops
Base interface for "type" operations.
Ops.Deconvolve - Class in net.imagej.ops
Built-in op interfaces of the deconvolve namespace.
Ops.Deconvolve.Accelerate - Interface in net.imagej.ops
Base interface for "accelerate" operations.
Ops.Deconvolve.FirstGuess - Interface in net.imagej.ops
Base interface for "firstGuess" operations.
Ops.Deconvolve.NormalizationFactor - Interface in net.imagej.ops
Base interface for "normalizationFactor" operations.
Ops.Deconvolve.RichardsonLucy - Interface in net.imagej.ops
Base interface for "richardsonLucy" operations.
Ops.Deconvolve.RichardsonLucyCorrection - Interface in net.imagej.ops
Base interface for "richardsonLucyCorrection" operations.
Ops.Deconvolve.RichardsonLucyTV - Interface in net.imagej.ops
Base interface for "richardsonLucyTV" operations.
Ops.Deconvolve.RichardsonLucyUpdate - Interface in net.imagej.ops
Base interface for "richardsonLucyUpdate" operations.
Ops.Eval - Interface in net.imagej.ops
Base interface for "eval" operations.
Ops.Filter - Class in net.imagej.ops
Built-in op interfaces of the filter namespace.
Ops.Filter.AddNoise - Interface in net.imagej.ops
Base interface for "addNoise" operations.
Ops.Filter.AddPoissonNoise - Interface in net.imagej.ops
Base interface for "addPoissonNoise" operations.
Ops.Filter.AllPartialDerivatives - Interface in net.imagej.ops
Base interface for "allPartialDerivatives" operations.
Ops.Filter.Bilateral - Interface in net.imagej.ops
Base interface for "bilateral" operations.
Ops.Filter.Convolve - Interface in net.imagej.ops
Base interface for "convolve" operations.
Ops.Filter.Correlate - Interface in net.imagej.ops
Base interface for "correlate" operations.
Ops.Filter.CreateFFTOutput - Interface in net.imagej.ops
Base interface for "createFFTOutput" operations.
Ops.Filter.DerivativeGauss - Interface in net.imagej.ops
Base interface for "derivativeGauss" operations.
Ops.Filter.DoG - Interface in net.imagej.ops
Base interface for "dog" operations.
Ops.Filter.FFT - Interface in net.imagej.ops
Base interface for "fft" operations.
Ops.Filter.FFTSize - Interface in net.imagej.ops
Base interface for "fftSize" operations.
Ops.Filter.FrangiVesselness - Interface in net.imagej.ops
Base interface for "frangiVesselness" operations.
Ops.Filter.Gauss - Interface in net.imagej.ops
Base interface for "gauss" operations.
Ops.Filter.Hessian - Interface in net.imagej.ops
Base interface for "hessian" operations.
Ops.Filter.IFFT - Interface in net.imagej.ops
Base interface for "ifft" operations.
Ops.Filter.LinearFilter - Interface in net.imagej.ops
Base interface for "linearFilter" operations.
Ops.Filter.Max - Interface in net.imagej.ops
Base interface for "max" operations.
Ops.Filter.Mean - Interface in net.imagej.ops
Base interface for "mean" operations.
Ops.Filter.Median - Interface in net.imagej.ops
Base interface for "median" operations.
Ops.Filter.Min - Interface in net.imagej.ops
Base interface for "min" operations.
Ops.Filter.PaddingIntervalCentered - Interface in net.imagej.ops
Base interface for "paddingIntervalCentered" operations.
Ops.Filter.PaddingIntervalOrigin - Interface in net.imagej.ops
Base interface for "paddingIntervalOrigin" operations.
Ops.Filter.PadFFTInput - Interface in net.imagej.ops
Base interface for "padFFTInput" operations.
Ops.Filter.PadInput - Interface in net.imagej.ops
Base interface for "padInput" operations.
Ops.Filter.PadShiftFFTKernel - Interface in net.imagej.ops
Base interface for "padShiftFFTKernel" operations.
Ops.Filter.PartialDerivative - Interface in net.imagej.ops
Base interface for "partialDerivative" operations.
Ops.Filter.Sigma - Interface in net.imagej.ops
Base interface for "sigma" operations.
Ops.Filter.Sobel - Interface in net.imagej.ops
Base interface for "sobel" operations.
Ops.Filter.Tubeness - Interface in net.imagej.ops
Base interface for "tubeness" operations.
Ops.Filter.Variance - Interface in net.imagej.ops
Base interface for "variance" operations.
Ops.Geometric - Class in net.imagej.ops
Built-in op interfaces of the geom namespace.
Ops.Geometric.Boundary - Interface in net.imagej.ops
Base interface for "boundary" operations.
Ops.Geometric.BoundaryConvexHull - Interface in net.imagej.ops
Base interface for "boundaryConvexHull" operations.
Ops.Geometric.BoundarySize - Interface in net.imagej.ops
Base interface for "boundarySize" operations.
Ops.Geometric.BoundarySizeConvexHull - Interface in net.imagej.ops
Base interface for "boundarySizeConvexHull" operations.
Ops.Geometric.BoundingBox - Interface in net.imagej.ops
Base interface for "boundingBox" operations.
Ops.Geometric.Boxivity - Interface in net.imagej.ops
Base interface for "boxivity" operations.
Ops.Geometric.CenterOfGravity - Interface in net.imagej.ops
Base interface for "centerOfGravity" operations.
Ops.Geometric.Centroid - Interface in net.imagej.ops
Base interface for "centroid" operations.
Ops.Geometric.Circularity - Interface in net.imagej.ops
Base interface for "circularity" operations.
Ops.Geometric.Compactness - Interface in net.imagej.ops
Base interface for "compactness" operations.
Ops.Geometric.Contour - Interface in net.imagej.ops
Base interface for "contour" operations.
Ops.Geometric.ConvexHull - Interface in net.imagej.ops
Base interface for "convexHull" operations.
Ops.Geometric.Convexity - Interface in net.imagej.ops
Base interface for "convexity" operations.
Ops.Geometric.Eccentricity - Interface in net.imagej.ops
Base interface for "eccentricity" operations.
Ops.Geometric.FeretsAngle - Interface in net.imagej.ops
Base interface for "feretsAngle" operations.
Ops.Geometric.FeretsDiameter - Interface in net.imagej.ops
Base interface for "feretsDiameter" operations.
Ops.Geometric.MainElongation - Interface in net.imagej.ops
Base interface for "mainElongation" operations.
Ops.Geometric.MajorAxis - Interface in net.imagej.ops
Base interface for "majorAxis" operations.
Ops.Geometric.MarchingCubes - Interface in net.imagej.ops
Base interface for "marchingCubes" operations.
Ops.Geometric.MaximumFeret - Interface in net.imagej.ops
Base interface for "maximumFeret" operations.
Ops.Geometric.MaximumFeretsAngle - Interface in net.imagej.ops
Base interface for "maximumFeretsAngle" operations.
Ops.Geometric.MaximumFeretsDiameter - Interface in net.imagej.ops
Base interface for "maximumFeretsDiameter" operations.
Ops.Geometric.MedianElongation - Interface in net.imagej.ops
Base interface for "medianElongation" operations.
Ops.Geometric.MinimumFeret - Interface in net.imagej.ops
Base interface for "minimumFeret" operations.
Ops.Geometric.MinimumFeretsAngle - Interface in net.imagej.ops
Base interface for "minimumFeretsAngle" operations.
Ops.Geometric.MinimumFeretsDiameter - Interface in net.imagej.ops
Base interface for "minimumFeretsDiameter" operations.
Ops.Geometric.MinorAxis - Interface in net.imagej.ops
Base interface for "minorAxis" operations.
Ops.Geometric.Roundness - Interface in net.imagej.ops
Base interface for "roundness" operations.
Ops.Geometric.SecondMoment - Interface in net.imagej.ops
Base interface for "secondMoment" operations.
Ops.Geometric.Size - Interface in net.imagej.ops
Base interface for "size" operations.
Ops.Geometric.SizeConvexHull - Interface in net.imagej.ops
Base interface for "sizeConvexHull" operations.
Ops.Geometric.SmallestEnclosingBoundingBox - Interface in net.imagej.ops
Base interface for "smallestEnclosingBoundingBox" operations.
Ops.Geometric.Solidity - Interface in net.imagej.ops
Base interface for "solidity" operations.
Ops.Geometric.Spareness - Interface in net.imagej.ops
Base interface for "spareness" operations.
Ops.Geometric.Sphericity - Interface in net.imagej.ops
Base interface for "sphericity" operations.
Ops.Geometric.VertexInterpolator - Interface in net.imagej.ops
Base interface for "vertexInterpolator" operations.
Ops.Geometric.VerticesCount - Interface in net.imagej.ops
Base interface for "verticesCount" operations.
Ops.Geometric.VerticesCountConvexHull - Interface in net.imagej.ops
Base interface for "verticesCountConvexHull" operations.
Ops.Geometric.Voxelization - Interface in net.imagej.ops
Base interface for "voxelization" operations.
Ops.Haralick - Class in net.imagej.ops
Built-in op interfaces of the haralick namespace.
Ops.Haralick.ASM - Interface in net.imagej.ops
Base interface for "asm" operations.
Ops.Haralick.ClusterPromenence - Interface in net.imagej.ops
Base interface for "clusterPromenence" operations.
Ops.Haralick.ClusterShade - Interface in net.imagej.ops
Base interface for "clusterShade" operations.
Ops.Haralick.Contrast - Interface in net.imagej.ops
Base interface for "contrast" operations.
Ops.Haralick.Correlation - Interface in net.imagej.ops
Base interface for "correlation" operations.
Ops.Haralick.DifferenceEntropy - Interface in net.imagej.ops
Base interface for "differenceEntropy" operations.
Ops.Haralick.DifferenceVariance - Interface in net.imagej.ops
Base interface for "differenceVariance" operations.
Ops.Haralick.Entropy - Interface in net.imagej.ops
Base interface for "entropy" operations.
Ops.Haralick.ICM1 - Interface in net.imagej.ops
Base interface for "icm1" operations.
Ops.Haralick.ICM2 - Interface in net.imagej.ops
Base interface for "icm2" operations.
Ops.Haralick.IFDM - Interface in net.imagej.ops
Base interface for "ifdm" operations.
Ops.Haralick.MaxProbability - Interface in net.imagej.ops
Base interface for "maxProbability" operations.
Ops.Haralick.SumAverage - Interface in net.imagej.ops
Base interface for "sumAverage" operations.
Ops.Haralick.SumEntropy - Interface in net.imagej.ops
Base interface for "sumEntropy" operations.
Ops.Haralick.SumVariance - Interface in net.imagej.ops
Base interface for "sumVariance" operations.
Ops.Haralick.TextureHomogeneity - Interface in net.imagej.ops
Base interface for "textureHomogeneity" operations.
Ops.Haralick.Variance - Interface in net.imagej.ops
Base interface for "variance" operations.
Ops.Help - Interface in net.imagej.ops
Base interface for "help" operations.
Ops.HoG - Class in net.imagej.ops
Built-in op interfaces of the hog namespace.
Ops.HoG.HistogramOfOrientedGradients - Interface in net.imagej.ops
Base interface for "hog" operations.
Ops.Identity - Interface in net.imagej.ops
Base interface for "identity" operations.
Ops.Image - Class in net.imagej.ops
Built-in op interfaces of the image namespace.
Ops.Image.ASCII - Interface in net.imagej.ops
Base interface for "ascii" operations.
Ops.Image.CooccurrenceMatrix - Interface in net.imagej.ops
Base interface for "cooccurrenceMatrix" operations.
Ops.Image.DistanceTransform - Interface in net.imagej.ops
Base interface for "distancetransform" operations.
Ops.Image.Equation - Interface in net.imagej.ops
Base interface for "equation" operations.
Ops.Image.Fill - Interface in net.imagej.ops
Base interface for "fill" operations.
Ops.Image.Histogram - Interface in net.imagej.ops
Base interface for "histogram" operations.
Ops.Image.Integral - Interface in net.imagej.ops
Base interface for "integral" operations.
Ops.Image.Invert - Interface in net.imagej.ops
Base interface for "invert" operations.
Ops.Image.Normalize - Interface in net.imagej.ops
Base interface for "normalize" operations.
Ops.Image.SquareIntegral - Interface in net.imagej.ops
Base interface for "squareIntegral" operations.
Ops.Image.Watershed - Interface in net.imagej.ops
Base interface for "watershed" operations.
Ops.ImageMoments - Class in net.imagej.ops
Built-in op interfaces of the imagemoments namespace.
Ops.ImageMoments.CentralMoment00 - Interface in net.imagej.ops
Base interface for "centralMoment00" operations.
Ops.ImageMoments.CentralMoment01 - Interface in net.imagej.ops
Base interface for "centralMoment01" operations.
Ops.ImageMoments.CentralMoment02 - Interface in net.imagej.ops
Base interface for "centralMoment02" operations.
Ops.ImageMoments.CentralMoment03 - Interface in net.imagej.ops
Base interface for "centralMoment03" operations.
Ops.ImageMoments.CentralMoment10 - Interface in net.imagej.ops
Base interface for "centralMoment10" operations.
Ops.ImageMoments.CentralMoment11 - Interface in net.imagej.ops
Base interface for "centralMoment11" operations.
Ops.ImageMoments.CentralMoment12 - Interface in net.imagej.ops
Base interface for "centralMoment12" operations.
Ops.ImageMoments.CentralMoment20 - Interface in net.imagej.ops
Base interface for "centralMoment20" operations.
Ops.ImageMoments.CentralMoment21 - Interface in net.imagej.ops
Base interface for "centralMoment21" operations.
Ops.ImageMoments.CentralMoment30 - Interface in net.imagej.ops
Base interface for "centralMoment30" operations.
Ops.ImageMoments.HuMoment1 - Interface in net.imagej.ops
Base interface for "huMoment1" operations.
Ops.ImageMoments.HuMoment2 - Interface in net.imagej.ops
Base interface for "huMoment2" operations.
Ops.ImageMoments.HuMoment3 - Interface in net.imagej.ops
Base interface for "huMoment3" operations.
Ops.ImageMoments.HuMoment4 - Interface in net.imagej.ops
Base interface for "huMoment4" operations.
Ops.ImageMoments.HuMoment5 - Interface in net.imagej.ops
Base interface for "huMoment5" operations.
Ops.ImageMoments.HuMoment6 - Interface in net.imagej.ops
Base interface for "huMoment6" operations.
Ops.ImageMoments.HuMoment7 - Interface in net.imagej.ops
Base interface for "huMoment7" operations.
Ops.ImageMoments.Moment00 - Interface in net.imagej.ops
Base interface for "moment00" operations.
Ops.ImageMoments.Moment01 - Interface in net.imagej.ops
Base interface for "moment01" operations.
Ops.ImageMoments.Moment10 - Interface in net.imagej.ops
Base interface for "moment10" operations.
Ops.ImageMoments.Moment11 - Interface in net.imagej.ops
Base interface for "moment11" operations.
Ops.ImageMoments.NormalizedCentralMoment02 - Interface in net.imagej.ops
Base interface for "normalizedCentralMoment02" operations.
Ops.ImageMoments.NormalizedCentralMoment03 - Interface in net.imagej.ops
Base interface for "normalizedCentralMoment03" operations.
Ops.ImageMoments.NormalizedCentralMoment11 - Interface in net.imagej.ops
Base interface for "normalizedCentralMoment11" operations.
Ops.ImageMoments.NormalizedCentralMoment12 - Interface in net.imagej.ops
Base interface for "normalizedCentralMoment12" operations.
Ops.ImageMoments.NormalizedCentralMoment20 - Interface in net.imagej.ops
Base interface for "normalizedCentralMoment20" operations.
Ops.ImageMoments.NormalizedCentralMoment21 - Interface in net.imagej.ops
Base interface for "normalizedCentralMoment21" operations.
Ops.ImageMoments.NormalizedCentralMoment30 - Interface in net.imagej.ops
Base interface for "normalizedCentralMoment30" operations.
Ops.Join - Interface in net.imagej.ops
Base interface for "join" operations.
Ops.Labeling - Class in net.imagej.ops
Built-in op interfaces of the labeling namespace.
Ops.Labeling.CCA - Interface in net.imagej.ops
Base interface for "cca" operations.
Ops.Labeling.Merge - Interface in net.imagej.ops
Base interface for "merge" operations.
Ops.LBP - Class in net.imagej.ops
Built-in op interfaces of the lbp namespace.
Ops.LBP.LBP2D - Interface in net.imagej.ops
Base interface for "lbp2D" operations.
Ops.LinAlg - Class in net.imagej.ops
Built-in op interfaces of the linalg namespace.
Ops.LinAlg.Rotate - Interface in net.imagej.ops
Base interface for "rotate" operations.
Ops.Logic - Class in net.imagej.ops
Built-in op interfaces of the logic namespace.
Ops.Logic.And - Interface in net.imagej.ops
Base interface for "and" operations.
Ops.Logic.Bool - Interface in net.imagej.ops
Base interface for "bool" operations.
Ops.Logic.Conditional - Interface in net.imagej.ops
Base interface for "conditional" operations.
Ops.Logic.Equal - Interface in net.imagej.ops
Base interface for "equal" operations.
Ops.Logic.GreaterThan - Interface in net.imagej.ops
Base interface for "greaterThan" operations.
Ops.Logic.GreaterThanOrEqual - Interface in net.imagej.ops
Base interface for "greaterThanOrEqual" operations.
Ops.Logic.LessThan - Interface in net.imagej.ops
Base interface for "lessThan" operations.
Ops.Logic.LessThanOrEqual - Interface in net.imagej.ops
Base interface for "lessThanOrEqual" operations.
Ops.Logic.Not - Interface in net.imagej.ops
Base interface for "not" operations.
Ops.Logic.NotEqual - Interface in net.imagej.ops
Base interface for "notEqual" operations.
Ops.Logic.Or - Interface in net.imagej.ops
Base interface for "or" operations.
Ops.Logic.Xor - Interface in net.imagej.ops
Base interface for "xor" operations.
Ops.Lookup - Interface in net.imagej.ops
Base interface for "op" operations.
Ops.Loop - Interface in net.imagej.ops
Base interface for "loop" operations.
Ops.Map - Interface in net.imagej.ops
Base interface for "map" operations.
Ops.Math - Class in net.imagej.ops
Built-in op interfaces of the math namespace.
Ops.Math.Abs - Interface in net.imagej.ops
Base interface for "abs" operations.
Ops.Math.Add - Interface in net.imagej.ops
Base interface for "add" operations.
Ops.Math.And - Interface in net.imagej.ops
Base interface for "and" operations.
Ops.Math.Arccos - Interface in net.imagej.ops
Base interface for "arccos" operations.
Ops.Math.Arccosh - Interface in net.imagej.ops
Base interface for "arccosh" operations.
Ops.Math.Arccot - Interface in net.imagej.ops
Base interface for "arccot" operations.
Ops.Math.Arccoth - Interface in net.imagej.ops
Base interface for "arccoth" operations.
Ops.Math.Arccsc - Interface in net.imagej.ops
Base interface for "arccsc" operations.
Ops.Math.Arccsch - Interface in net.imagej.ops
Base interface for "arccsch" operations.
Ops.Math.Arcsec - Interface in net.imagej.ops
Base interface for "arcsec" operations.
Ops.Math.Arcsech - Interface in net.imagej.ops
Base interface for "arcsech" operations.
Ops.Math.Arcsin - Interface in net.imagej.ops
Base interface for "arcsin" operations.
Ops.Math.Arcsinh - Interface in net.imagej.ops
Base interface for "arcsinh" operations.
Ops.Math.Arctan - Interface in net.imagej.ops
Base interface for "arctan" operations.
Ops.Math.Arctanh - Interface in net.imagej.ops
Base interface for "arctanh" operations.
Ops.Math.Assign - Interface in net.imagej.ops
Base interface for "assign" operations.
Ops.Math.Ceil - Interface in net.imagej.ops
Base interface for "ceil" operations.
Ops.Math.Complement - Interface in net.imagej.ops
Base interface for "complement" operations.
Ops.Math.ComplexConjugateMultiply - Interface in net.imagej.ops
Base interface for "complexConjugateMultiply" operations.
Ops.Math.Cos - Interface in net.imagej.ops
Base interface for "cos" operations.
Ops.Math.Cosh - Interface in net.imagej.ops
Base interface for "cosh" operations.
Ops.Math.Cot - Interface in net.imagej.ops
Base interface for "cot" operations.
Ops.Math.Coth - Interface in net.imagej.ops
Base interface for "coth" operations.
Ops.Math.Csc - Interface in net.imagej.ops
Base interface for "csc" operations.
Ops.Math.Csch - Interface in net.imagej.ops
Base interface for "csch" operations.
Ops.Math.CubeRoot - Interface in net.imagej.ops
Base interface for "cubeRoot" operations.
Ops.Math.Divide - Interface in net.imagej.ops
Base interface for "divide" operations.
Ops.Math.Exp - Interface in net.imagej.ops
Base interface for "exp" operations.
Ops.Math.ExpMinusOne - Interface in net.imagej.ops
Base interface for "expMinusOne" operations.
Ops.Math.Floor - Interface in net.imagej.ops
Base interface for "floor" operations.
Ops.Math.Gamma - Interface in net.imagej.ops
Base interface for "gamma" operations.
Ops.Math.Invert - Interface in net.imagej.ops
Base interface for "invert" operations.
Ops.Math.LeftShift - Interface in net.imagej.ops
Base interface for "leftShift" operations.
Ops.Math.Log - Interface in net.imagej.ops
Base interface for "log" operations.
Ops.Math.Log10 - Interface in net.imagej.ops
Base interface for "log10" operations.
Ops.Math.Log2 - Interface in net.imagej.ops
Base interface for "log2" operations.
Ops.Math.LogOnePlusX - Interface in net.imagej.ops
Base interface for "logOnePlusX" operations.
Ops.Math.Max - Interface in net.imagej.ops
Base interface for "max" operations.
Ops.Math.Min - Interface in net.imagej.ops
Base interface for "min" operations.
Ops.Math.Multiply - Interface in net.imagej.ops
Base interface for "multiply" operations.
Ops.Math.NearestInt - Interface in net.imagej.ops
Base interface for "nearestInt" operations.
Ops.Math.Negate - Interface in net.imagej.ops
Base interface for "negate" operations.
Ops.Math.Or - Interface in net.imagej.ops
Base interface for "or" operations.
Ops.Math.Power - Interface in net.imagej.ops
Base interface for "power" operations.
Ops.Math.RandomGaussian - Interface in net.imagej.ops
Base interface for "randomGaussian" operations.
Ops.Math.RandomUniform - Interface in net.imagej.ops
Base interface for "randomUniform" operations.
Ops.Math.Reciprocal - Interface in net.imagej.ops
Base interface for "reciprocal" operations.
Ops.Math.Remainder - Interface in net.imagej.ops
Base interface for "remainder" operations.
Ops.Math.RightShift - Interface in net.imagej.ops
Base interface for "rightShift" operations.
Ops.Math.Round - Interface in net.imagej.ops
Base interface for "round" operations.
Ops.Math.Sec - Interface in net.imagej.ops
Base interface for "sec" operations.
Ops.Math.Sech - Interface in net.imagej.ops
Base interface for "sech" operations.
Ops.Math.Signum - Interface in net.imagej.ops
Base interface for "signum" operations.
Ops.Math.Sin - Interface in net.imagej.ops
Base interface for "sin" operations.
Ops.Math.Sinc - Interface in net.imagej.ops
Base interface for "sinc" operations.
Ops.Math.SincPi - Interface in net.imagej.ops
Base interface for "sincPi" operations.
Ops.Math.Sinh - Interface in net.imagej.ops
Base interface for "sinh" operations.
Ops.Math.Sqr - Interface in net.imagej.ops
Base interface for "sqr" operations.
Ops.Math.Sqrt - Interface in net.imagej.ops
Base interface for "sqrt" operations.
Ops.Math.Step - Interface in net.imagej.ops
Base interface for "step" operations.
Ops.Math.Subtract - Interface in net.imagej.ops
Base interface for "subtract" operations.
Ops.Math.Tan - Interface in net.imagej.ops
Base interface for "tan" operations.
Ops.Math.Tanh - Interface in net.imagej.ops
Base interface for "tanh" operations.
Ops.Math.Ulp - Interface in net.imagej.ops
Base interface for "ulp" operations.
Ops.Math.UnsignedRightShift - Interface in net.imagej.ops
Base interface for "unsignedRightShift" operations.
Ops.Math.Xor - Interface in net.imagej.ops
Base interface for "xor" operations.
Ops.Math.Zero - Interface in net.imagej.ops
Base interface for "zero" operations.
Ops.Morphology - Class in net.imagej.ops
Built-in op interfaces of the morphology namespace.
Ops.Morphology.BlackTopHat - Interface in net.imagej.ops
Base interface for "blackTopHat" operations.
Ops.Morphology.Close - Interface in net.imagej.ops
Base interface for "close" operations.
Ops.Morphology.Dilate - Interface in net.imagej.ops
Base interface for "dilate" operations.
Ops.Morphology.Erode - Interface in net.imagej.ops
Base interface for "erode" operations.
Ops.Morphology.ExtractHoles - Interface in net.imagej.ops
Base interface for "extractHoles" operations.
Ops.Morphology.FillHoles - Interface in net.imagej.ops
Base interface for "fillHoles" operations.
Ops.Morphology.FloodFill - Interface in net.imagej.ops
Base interface for "floodFill" operations.
Ops.Morphology.Open - Interface in net.imagej.ops
Base interface for "open" operations.
Ops.Morphology.Outline - Interface in net.imagej.ops
Base interface for "outline" operations.
Ops.Morphology.ThinGuoHall - Interface in net.imagej.ops
Base interface for "thinGuoHall" operations.
Ops.Morphology.ThinHilditch - Interface in net.imagej.ops
Base interface for "thinHilditch" operations.
Ops.Morphology.ThinMorphological - Interface in net.imagej.ops
Base interface for "thinMorphological" operations.
Ops.Morphology.ThinZhangSuen - Interface in net.imagej.ops
Base interface for "thinZhangSuen" operations.
Ops.Morphology.TopHat - Interface in net.imagej.ops
Base interface for "topHat" operations.
Ops.Run - Interface in net.imagej.ops
Base interface for "run" operations.
Ops.Segment - Class in net.imagej.ops
Built-in op interfaces of the segment namespace.
Ops.Segment.DetectJunctions - Interface in net.imagej.ops
Base interface for "detectJunctions" operations.
Ops.Segment.DetectRidges - Interface in net.imagej.ops
Base interface for "detectRidges" operations.
Ops.Slice - Interface in net.imagej.ops
Base interface for "slice" operations.
Ops.Stats - Class in net.imagej.ops
Built-in op interfaces of the stats namespace.
Ops.Stats.GeometricMean - Interface in net.imagej.ops
Base interface for "geometricMean" operations.
Ops.Stats.HarmonicMean - Interface in net.imagej.ops
Base interface for "harmonicMean" operations.
Ops.Stats.IntegralMean - Interface in net.imagej.ops
Base interface for "integralMean" operations.
Ops.Stats.IntegralSum - Interface in net.imagej.ops
Base interface for "integralSum" operations.
Ops.Stats.IntegralVariance - Interface in net.imagej.ops
Base interface for "integralVariance" operations.
Ops.Stats.Kurtosis - Interface in net.imagej.ops
Base interface for "kurtosis" operations.
Ops.Stats.LeastSquares - Interface in net.imagej.ops
Base interface for "leastSquares" operations.
Ops.Stats.Max - Interface in net.imagej.ops
Base interface for "max" operations.
Ops.Stats.Mean - Interface in net.imagej.ops
Base interface for "mean" operations.
Ops.Stats.Median - Interface in net.imagej.ops
Base interface for "median" operations.
Ops.Stats.Min - Interface in net.imagej.ops
Base interface for "min" operations.
Ops.Stats.MinMax - Interface in net.imagej.ops
Base interface for "minMax" operations.
Ops.Stats.Moment1AboutMean - Interface in net.imagej.ops
Base interface for "moment1AboutMean" operations.
Ops.Stats.Moment2AboutMean - Interface in net.imagej.ops
Base interface for "moment2AboutMean" operations.
Ops.Stats.Moment3AboutMean - Interface in net.imagej.ops
Base interface for "moment3AboutMean" operations.
Ops.Stats.Moment4AboutMean - Interface in net.imagej.ops
Base interface for "moment4AboutMean" operations.
Ops.Stats.Percentile - Interface in net.imagej.ops
Base interface for "percentile" operations.
Ops.Stats.Quantile - Interface in net.imagej.ops
Base interface for "quantile" operations.
Ops.Stats.Size - Interface in net.imagej.ops
Base interface for "size" operations.
Ops.Stats.Skewness - Interface in net.imagej.ops
Base interface for "skewness" operations.
Ops.Stats.StdDev - Interface in net.imagej.ops
Base interface for "stdDev" operations.
Ops.Stats.Sum - Interface in net.imagej.ops
Base interface for "sum" operations.
Ops.Stats.SumOfInverses - Interface in net.imagej.ops
Base interface for "sumOfInverses" operations.
Ops.Stats.SumOfLogs - Interface in net.imagej.ops
Base interface for "sumOfLogs" operations.
Ops.Stats.SumOfSquares - Interface in net.imagej.ops
Base interface for "sumOfSquares" operations.
Ops.Stats.Variance - Interface in net.imagej.ops
Base interface for "variance" operations.
Ops.Tamura - Class in net.imagej.ops
Built-in op interfaces of the tamura namespace.
Ops.Tamura.Coarseness - Interface in net.imagej.ops
Base interface for "coarseness" operations.
Ops.Tamura.Contrast - Interface in net.imagej.ops
Base interface for "contrast" operations.
Ops.Tamura.Directionality - Interface in net.imagej.ops
Base interface for "directionality" operations.
Ops.Thread - Class in net.imagej.ops
Built-in op interfaces of the thread namespace.
Ops.Thread.Chunker - Interface in net.imagej.ops
Base interface for "chunker" operations.
Ops.Threshold - Class in net.imagej.ops
Built-in op interfaces of the threshold namespace.
Ops.Threshold.Apply - Interface in net.imagej.ops
Base interface for "apply" operations.
Ops.Threshold.Huang - Interface in net.imagej.ops
Base interface for "huang" operations.
Ops.Threshold.IJ1 - Interface in net.imagej.ops
Base interface for "ij1" operations.
Ops.Threshold.Intermodes - Interface in net.imagej.ops
Base interface for "intermodes" operations.
Ops.Threshold.IsoData - Interface in net.imagej.ops
Base interface for "isoData" operations.
Ops.Threshold.Li - Interface in net.imagej.ops
Base interface for "li" operations.
Ops.Threshold.LocalBernsenThreshold - Interface in net.imagej.ops
Base interface for "localBernsenThreshold" operations.
Ops.Threshold.LocalContrastThreshold - Interface in net.imagej.ops
Base interface for "localContrastThreshold" operations.
Ops.Threshold.LocalMeanThreshold - Interface in net.imagej.ops
Base interface for "localMeanThreshold" operations.
Ops.Threshold.LocalMedianThreshold - Interface in net.imagej.ops
Base interface for "localMedianThreshold" operations.
Ops.Threshold.LocalMidGreyThreshold - Interface in net.imagej.ops
Base interface for "localMidGreyThreshold" operations.
Ops.Threshold.LocalNiblackThreshold - Interface in net.imagej.ops
Base interface for "localNiblackThreshold" operations.
Ops.Threshold.LocalPhansalkarThreshold - Interface in net.imagej.ops
Base interface for "localPhansalkarThreshold" operations.
Ops.Threshold.LocalSauvolaThreshold - Interface in net.imagej.ops
Base interface for "localSauvolaThreshold" operations.
Ops.Threshold.MaxEntropy - Interface in net.imagej.ops
Base interface for "maxEntropy" operations.
Ops.Threshold.MaxLikelihood - Interface in net.imagej.ops
Base interface for "maxLikelihood" operations.
Ops.Threshold.Mean - Interface in net.imagej.ops
Base interface for "mean" operations.
Ops.Threshold.MinError - Interface in net.imagej.ops
Base interface for "minError" operations.
Ops.Threshold.Minimum - Interface in net.imagej.ops
Base interface for "minimum" operations.
Ops.Threshold.Moments - Interface in net.imagej.ops
Base interface for "moments" operations.
Ops.Threshold.Otsu - Interface in net.imagej.ops
Base interface for "otsu" operations.
Ops.Threshold.Percentile - Interface in net.imagej.ops
Base interface for "percentile" operations.
Ops.Threshold.RenyiEntropy - Interface in net.imagej.ops
Base interface for "renyiEntropy" operations.
Ops.Threshold.Rosin - Interface in net.imagej.ops
Base interface for "rosin" operations.
Ops.Threshold.Shanbhag - Interface in net.imagej.ops
Base interface for "shanbhag" operations.
Ops.Threshold.Triangle - Interface in net.imagej.ops
Base interface for "triangle" operations.
Ops.Threshold.Yen - Interface in net.imagej.ops
Base interface for "yen" operations.
Ops.Topology - Class in net.imagej.ops
Built-in op interfaces of the topology namespace.
Ops.Topology.BoxCount - Interface in net.imagej.ops
Base interface for "boxCount" operations.
Ops.Topology.EulerCharacteristic26N - Interface in net.imagej.ops
Base interface for "eulerCharacteristic26N" operations.
Ops.Topology.EulerCharacteristic26NFloating - Interface in net.imagej.ops
Base interface for "eulerCharacteristic26NFloating" operations.
Ops.Topology.EulerCorrection - Interface in net.imagej.ops
Base interface for "eulerCorrection" operations.
Ops.Transform - Class in net.imagej.ops
Built-in op interfaces of the transform namespace.
Ops.Transform.AddDimensionView - Interface in net.imagej.ops
Base interface for "addDimensionView" operations.
Ops.Transform.CollapseNumericView - Interface in net.imagej.ops
Base interface for "collapseNumericView" operations.
Ops.Transform.CollapseRealView - Interface in net.imagej.ops
Base interface for "collapseRealView" operations.
Ops.Transform.CollapseView - Interface in net.imagej.ops
Base interface for "collapseView" operations.
Ops.Transform.ConcatenateView - Interface in net.imagej.ops
Base interface for "concatenateView" operations.
Ops.Transform.Crop - Interface in net.imagej.ops
Base interface for "crop" operations.
Ops.Transform.DropSingletonDimensionsView - Interface in net.imagej.ops
Base interface for "dropSingletonDimensionsView" operations.
Ops.Transform.ExtendBorderView - Interface in net.imagej.ops
Base interface for "extendBorderView" operations.
Ops.Transform.ExtendMirrorDoubleView - Interface in net.imagej.ops
Base interface for "extendMirrorDoubleView" operations.
Ops.Transform.ExtendMirrorSingleView - Interface in net.imagej.ops
Base interface for "extendMirrorSingleView" operations.
Ops.Transform.ExtendPeriodicView - Interface in net.imagej.ops
Base interface for "extendPeriodicView" operations.
Ops.Transform.ExtendRandomView - Interface in net.imagej.ops
Base interface for "extendRandomView" operations.
Ops.Transform.ExtendValueView - Interface in net.imagej.ops
Base interface for "extendValueView" operations.
Ops.Transform.ExtendView - Interface in net.imagej.ops
Base interface for "extendView" operations.
Ops.Transform.ExtendZeroView - Interface in net.imagej.ops
Base interface for "extendZeroView" operations.
Ops.Transform.FlatIterableView - Interface in net.imagej.ops
Base interface for "flatIterableView" operations.
Ops.Transform.HyperSliceView - Interface in net.imagej.ops
Base interface for "hyperSliceView" operations.
Ops.Transform.InterpolateView - Interface in net.imagej.ops
Base interface for "interpolateView" operations.
Ops.Transform.IntervalView - Interface in net.imagej.ops
Base interface for "intervalView" operations.
Ops.Transform.InvertAxisView - Interface in net.imagej.ops
Base interface for "invertAxisView" operations.
Ops.Transform.IterableView - Interface in net.imagej.ops
Base interface for "iterableView" operations.
Ops.Transform.OffsetView - Interface in net.imagej.ops
Base interface for "offsetView" operations.
Ops.Transform.PermuteCoordinatesInverseView - Interface in net.imagej.ops
Base interface for "permuteCoordinatesInverseView" operations.
Ops.Transform.PermuteCoordinatesView - Interface in net.imagej.ops
Base interface for "permuteCoordinatesView" operations.
Ops.Transform.PermuteView - Interface in net.imagej.ops
Base interface for "permuteView" operations.
Ops.Transform.Project - Interface in net.imagej.ops
Base interface for "project" operations.
Ops.Transform.RasterView - Interface in net.imagej.ops
Base interface for "rasterView" operations.
Ops.Transform.RotateView - Interface in net.imagej.ops
Base interface for "rotateView" operations.
Ops.Transform.ScaleView - Interface in net.imagej.ops
Base interface for "scaleView" operations.
Ops.Transform.ShearView - Interface in net.imagej.ops
Base interface for "shearView" operations.
Ops.Transform.StackView - Interface in net.imagej.ops
Base interface for "stackView" operations.
Ops.Transform.SubsampleView - Interface in net.imagej.ops
Base interface for "subsampleView" operations.
Ops.Transform.TranslateView - Interface in net.imagej.ops
Base interface for "translateView" operations.
Ops.Transform.UnshearView - Interface in net.imagej.ops
Base interface for "unshearView" operations.
Ops.Transform.ZeroMinView - Interface in net.imagej.ops
Base interface for "zeroMinView" operations.
Ops.Zernike - Class in net.imagej.ops
Built-in op interfaces of the zernike namespace.
Ops.Zernike.Magnitude - Interface in net.imagej.ops
Base interface for "magnitude" operations.
Ops.Zernike.Phase - Interface in net.imagej.ops
Base interface for "phase" operations.
OpSearcher - Class in net.imagej.ops.search
Searcher plugin for ImageJ Ops.
OpSearcher() - Constructor for class net.imagej.ops.search.OpSearcher
 
OpSearchResult - Class in net.imagej.ops.search
Search result for the OpSearcher.
OpSearchResult(Context, OpInfo, String) - Constructor for class net.imagej.ops.search.OpSearchResult
 
OpService - Interface in net.imagej.ops
Interface for services that manage and execute Ops.
opString(String, Object...) - Static method in class net.imagej.ops.OpUtils
Gets a string describing the given op request.
opString(ModuleInfo) - Static method in class net.imagej.ops.OpUtils
Gets a string describing the given op.
opString(ModuleInfo, ModuleItem<?>) - Static method in class net.imagej.ops.OpUtils
Gets a string describing the given op, highlighting the specific parameter.
optionDialog(String, String, Object[], int) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
optionDialog(String, String, Object[], int) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
optionDialog(String, String, Object[], int) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
optionDialog(String, String, Object[], int) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
OptionsAppearance - Class in net.imagej.options
Runs the Edit::Options::Appearance dialog.
OptionsAppearance() - Constructor for class net.imagej.options.OptionsAppearance
 
OptionsArrowTool - Class in net.imagej.options
Runs the Edit::Options::Arrow Tool dialog.
OptionsArrowTool() - Constructor for class net.imagej.options.OptionsArrowTool
 
OptionsChannels - Class in net.imagej.options
Runs the Edit::Options::Channels dialog.
OptionsChannels() - Constructor for class net.imagej.options.OptionsChannels
 
OptionsCompatibility - Class in net.imagej.options
Runs the Edit::Options::Compatibility dialog.
OptionsCompatibility() - Constructor for class net.imagej.options.OptionsCompatibility
 
OptionsCompiler - Class in net.imagej.options
Runs the Edit::Options::Compiler dialog.
OptionsCompiler() - Constructor for class net.imagej.options.OptionsCompiler
 
OptionsConversions - Class in net.imagej.options
Runs the Edit::Options::Conversions dialog.
OptionsConversions() - Constructor for class net.imagej.options.OptionsConversions
 
OptionsDicom - Class in net.imagej.options
Runs the Edit::Options::DICOM dialog.
OptionsDicom() - Constructor for class net.imagej.options.OptionsDicom
 
OptionsFont - Class in net.imagej.options
Runs the Edit::Options::Fonts dialog.
OptionsFont() - Constructor for class net.imagej.options.OptionsFont
 
OptionsInputOutput - Class in net.imagej.options
Runs the Edit::Options::Input/Output dialog.
OptionsInputOutput() - Constructor for class net.imagej.options.OptionsInputOutput
 
OptionsLineWidth - Class in net.imagej.options
Runs the Edit::Options::Line Width dialog.
OptionsLineWidth() - Constructor for class net.imagej.options.OptionsLineWidth
 
OptionsMemoryAndThreads - Class in net.imagej.options
Runs the Edit::Options::Memory & Threads dialog.
OptionsMemoryAndThreads() - Constructor for class net.imagej.options.OptionsMemoryAndThreads
 
OptionsMisc - Class in net.imagej.options
Runs the Edit::Options::Misc dialog.
OptionsMisc() - Constructor for class net.imagej.options.OptionsMisc
 
OptionsOverlay - Class in net.imagej.options
Runs the Edit::Options::Overlay...
OptionsOverlay() - Constructor for class net.imagej.options.OptionsOverlay
 
OptionsPointTool - Class in net.imagej.options
Runs the Edit::Options::Point Tool dialog.
OptionsPointTool() - Constructor for class net.imagej.options.OptionsPointTool
 
OptionsProfilePlot - Class in net.imagej.options
Runs the Edit::Options::Profile Plot Options dialog.
OptionsProfilePlot() - Constructor for class net.imagej.options.OptionsProfilePlot
 
OptionsProxy - Class in net.imagej.options
Runs the Edit::Options::Proxy Settings dialog.
OptionsProxy() - Constructor for class net.imagej.options.OptionsProxy
 
OptionsReset - Class in net.imagej.options
Runs the Edit::Options::Reset dialog.
OptionsReset() - Constructor for class net.imagej.options.OptionsReset
 
OptionsRoundedRectangleTool - Class in net.imagej.options
Runs the Edit::Options::Rounded Rectangle Tool dialog.
OptionsRoundedRectangleTool() - Constructor for class net.imagej.options.OptionsRoundedRectangleTool
 
OptionsSynchronizer - Class in net.imagej.legacy
The options synchronizer bidirectionally synchronizes modern ImageJ options with legacy ImageJ settings and preferences.
OptionsSynchronizer(OptionsService) - Constructor for class net.imagej.legacy.OptionsSynchronizer
 
OptionsWandTool - Class in net.imagej.options
Runs the Edit::Options::Wand Tool dialog.
OptionsWandTool() - Constructor for class net.imagej.options.OptionsWandTool
 
OpUtils - Class in net.imagej.ops
Utility methods for working with ops.
or(RealMaskRealInterval) - Method in class net.imagej.omero.legacy.text.OMEROText
or(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.OMEROText
or(RealMaskRealInterval) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
or(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
Or() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.Or
 
Or() - Constructor for class net.imagej.ops.logic.IIToIIOutputII.Or
 
Or() - Constructor for class net.imagej.ops.logic.IIToRAIOutputII.Or
 
or(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace
 
or(T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
or(T, T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
or(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
or(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
or(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
or(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
Or() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Or
 
or(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
or(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
or(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
 
or(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
 
or(FilesCollection.Filter, FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection
 
OrDataValuesWith<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by ORing an input Dataset with a user defined constant value.
OrDataValuesWith() - Constructor for class net.imagej.plugins.commands.assign.OrDataValuesWith
 
order - Variable in class net.imagej.ops.features.zernike.AbstractZernikeFeature
 
orientation - Variable in class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
origin() - Method in class net.imagej.axis.DefaultLinearAxis
 
origin() - Method in interface net.imagej.axis.LinearAxis
 
originalArguments - Static variable in class net.imagej.launcher.ClassLauncher
 
originalUpdateSite - Variable in class net.imagej.updater.FileObject
 
originMax(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Returns true if the origin point of the reslicing for the user specified axis is to be the largest value of the axis.
originMin(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Returns true if the origin point of the reslicing for the user specified axis is to be the smallest value of the axis.
OrthogonalViews - Class in net.imagej.plugins.commands.display.interactive
Place holder for the future implementation of the Orthogonal Views command.
OrthogonalViews() - Constructor for class net.imagej.plugins.commands.display.interactive.OrthogonalViews
 
Otsu() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Otsu
 
otsu(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
otsu(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
otsu(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
otsu(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
otsu(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
otsu(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
out() - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp
 
out() - Method in class net.imagej.ops.special.computer.AbstractNullaryComputerOp
 
out() - Method in class net.imagej.ops.special.computer.AbstractUnaryComputerOp
 
out() - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp
 
out() - Method in class net.imagej.ops.special.function.AbstractNullaryFunctionOp
 
out() - Method in class net.imagej.ops.special.function.AbstractUnaryFunctionOp
 
out() - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
 
out() - Method in class net.imagej.ops.special.hybrid.AbstractNullaryHybridCF
 
out() - Method in class net.imagej.ops.special.hybrid.AbstractUnaryHybridC
 
out() - Method in class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op
 
out() - Method in class net.imagej.ops.special.inplace.AbstractUnaryInplaceOp
 
out() - Method in interface net.imagej.ops.special.Output
 
out - Variable in class net.imagej.updater.util.InputStream2OutputStream
 
outline(RandomAccessibleInterval<BitType>, RandomAccessibleInterval<B>, Boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
outline(RandomAccessibleInterval<B>, Boolean) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
Outline<B extends BooleanType<B>> - Class in net.imagej.ops.morphology.outline
The Op creates an output interval where the objects are hollow versions from the input.
Outline() - Constructor for class net.imagej.ops.morphology.outline.Outline
 
outMax - Variable in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
 
outMin - Variable in class net.imagej.ops.convert.scale.ScaleRealTypes
 
OutOfBoundsFactoryMixIn() - Constructor for class net.imagej.server.mixins.Mixins.OutOfBoundsFactoryMixIn
 
Output<O> - Interface in net.imagej.ops.special
Interface for objects with a typed output parameter.
output - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
OutputAlgorithm<T> - Interface in net.imagej.plugins.commands.imglib
TODO - This interface was created from ImgLib's Algorithm + OutputAlgorithm.
outputMask() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets the output mask.
OutputMutable<O> - Interface in net.imagej.ops.special
Interface for Output objects whose typed output parameter is mutable.
outputs() - Method in class net.imagej.ops.OpCandidate
Gets the op's output parameters.
outputs() - Method in class net.imagej.ops.OpInfo
Gets the op's output parameters.
outputs(ModuleInfo) - Static method in class net.imagej.ops.OpUtils
Gets the given ModuleInfo's list of outputs.
outputs() - Method in class net.imagej.server.mixins.Mixins.ModuleInfoMixIn
 
OUTSIDE - Static variable in class net.imagej.plugins.commands.binary.Binarize
 
OvalRoiToEllipsoidConverter - Class in net.imagej.legacy.convert.roi.ellipsoid
Converts an ImageJ 1.x OvalRoi to an ImgLib2 Ellipsoid.
OvalRoiToEllipsoidConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter
 
OvalRoiToEllipsoidOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.OvalRoiToEllipsoidOMEROConverter
 
OvalRoiWrapper - Class in net.imagej.legacy.convert.roi.ellipsoid
Wraps an ImageJ 1.x OvalRoi as an ImgLib2 Ellipsoid.
OvalRoiWrapper(int, int, int, int) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
Creates an ImageJ 1.x OvalRoi and then wraps it as an ImgLib2 Ellipsoid.
OvalRoiWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
Creates an ImageJ 1.x OvalRoi and then wraps it as an ImgLib2 Ellipsoid.
OvalRoiWrapper(OvalRoi) - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
Wraps the given ImageJ 1.x OvalRoi as an ImgLib2 Ellipsoid.
OvalRoiWrapperToEllipseData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.OvalRoiWrapperToEllipseData
 
overlay() - Method in class net.imagej.ImageJ
Gets this application context's OverlayService.
Overlay - Interface in net.imagej.overlay
An overlay is a vector object, typically displayed with Datasets.
Overlay.ArrowStyle - Enum in net.imagej.overlay
Arrow decorations for the start and end.
Overlay.LineStyle - Enum in net.imagej.overlay
The style used to render the bounding line of the overlay.
OverlayCreatedEvent - Class in net.imagej.event
An event indicating a new Overlay has been created.
OverlayCreatedEvent(Overlay) - Constructor for class net.imagej.event.OverlayCreatedEvent
 
OverlayDeletedEvent - Class in net.imagej.event
An event indicating an Overlay has been deleted.
OverlayDeletedEvent(Overlay) - Constructor for class net.imagej.event.OverlayDeletedEvent
 
OverlayFigureView - Class in net.imagej.ui.swing.viewer.image
A figure view that links an ImageJ OverlayView to a JHotDraw Figure.
OverlayFigureView(SwingImageDisplayViewer, OverlayView) - Constructor for class net.imagej.ui.swing.viewer.image.OverlayFigureView
Constructor to use to discover the figure to use for an overlay
OverlayFigureView(SwingImageDisplayViewer, OverlayView, Figure) - Constructor for class net.imagej.ui.swing.viewer.image.OverlayFigureView
Constructor to use if the figure already exists, for instance if it was created using the CreationTool
OverlayHarmonizer - Class in net.imagej.legacy.translate
Deprecated.
OverlayHarmonizer(Context) - Constructor for class net.imagej.legacy.translate.OverlayHarmonizer
Deprecated.
 
OverlayInfo - Class in net.imagej.display
This class defines what information is stored in an OverlayInfoList.
OverlayInfo(Overlay) - Constructor for class net.imagej.display.OverlayInfo
 
OverlayInfo(Overlay, boolean) - Constructor for class net.imagej.display.OverlayInfo
 
OverlayInfoList - Class in net.imagej.display
Stores data that is used by various OverlayManager implementations.
OverlayInfoList() - Constructor for class net.imagej.display.OverlayInfoList
 
OverlayLabels - Class in net.imagej.plugins.commands.overlay
Place holder for the future implementation of the Overlay Labels command.
OverlayLabels() - Constructor for class net.imagej.plugins.commands.overlay.OverlayLabels
 
OverlayManager - Class in net.imagej.ui.swing.commands
Command to pop up the SwingOverlayManager.
OverlayManager() - Constructor for class net.imagej.ui.swing.commands.OverlayManager
 
OverlayPreprocessor - Class in net.imagej.legacy.plugin
Injects the Overlay of the current ImagePlus when a single Overlay is declared as a parameter.
OverlayPreprocessor() - Constructor for class net.imagej.legacy.plugin.OverlayPreprocessor
 
OverlayProperties - Class in net.imagej.plugins.commands.overlay
A plugin to change the properties (e.g., line color, line width) of a set of overlays selected in an image display.
OverlayProperties() - Constructor for class net.imagej.plugins.commands.overlay.OverlayProperties
 
OverlayRestructuredEvent - Class in net.imagej.event
An event indicating an Overlay's dimensional extents may have changed.
OverlayRestructuredEvent(Overlay) - Constructor for class net.imagej.event.OverlayRestructuredEvent
 
OverlayService - Interface in net.imagej.display
Interface for service that works with Overlays.
overlayService - Variable in class net.imagej.plugins.commands.assign.MathCommand
 
OverlaySettings - Class in net.imagej.overlay
Utility class that gives access to default overlay settings such as fill, transparency, arrow styles, etc.
OverlaySettings() - Constructor for class net.imagej.overlay.OverlaySettings
 
OverlayToROITree - Class in net.imagej.omero.legacy.convert
Converts an Overlay to a ROITree.
OverlayToROITree() - Constructor for class net.imagej.omero.legacy.convert.OverlayToROITree
 
OverlayToROITreeConverter - Class in net.imagej.legacy.convert
Converts an Overlay to a ROITree.
OverlayToROITreeConverter() - Constructor for class net.imagej.legacy.convert.OverlayToROITreeConverter
 
OverlayUpdatedEvent - Class in net.imagej.event
An event indicating an Overlay's data has been updated.
OverlayUpdatedEvent(Overlay) - Constructor for class net.imagej.event.OverlayUpdatedEvent
 
OverlayView - Interface in net.imagej.display
A linkage between an Overlay and a Display.
overriddenUpdateSites - Variable in class net.imagej.updater.FileObject
 
overrides - Variable in class net.imagej.updater.Dependency
 
overridesOtherUpdateSite() - Method in class net.imagej.updater.FileObject
 
overwriteWithUpdated(FilesCollection, FileObject) - Method in class net.imagej.ui.swing.updater.ImageJUpdater
 

P

PadAndConvolveFFT<I extends RealType<I> & NativeType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.filter.convolve
Convolve op for (@link Img)
PadAndConvolveFFT() - Constructor for class net.imagej.ops.filter.convolve.PadAndConvolveFFT
 
PadAndConvolveFFTF<I extends RealType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K>> - Class in net.imagej.ops.filter.convolve
Function adapter for PadAndConvolveFFT.
PadAndConvolveFFTF() - Constructor for class net.imagej.ops.filter.convolve.PadAndConvolveFFTF
 
PadAndCorrelateFFT<I extends RealType<I> & NativeType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.filter.correlate
Correlate op for (@link Img)
PadAndCorrelateFFT() - Constructor for class net.imagej.ops.filter.correlate.PadAndCorrelateFFT
 
PadAndRichardsonLucy<I extends RealType<I> & NativeType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.deconvolve
Richardson Lucy function op that operates on (@link RandomAccessibleInterval) (Lucy, L.
PadAndRichardsonLucy() - Constructor for class net.imagej.ops.deconvolve.PadAndRichardsonLucy
 
PadAndRichardsonLucyTV<I extends RealType<I> & NativeType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K> & NativeType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.deconvolve
Richardson Lucy with total variation function op that operates on (@link RandomAccessibleInterval) (Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution Microsc Res Rech 2006 Apr; 69(4)- 260-6)
PadAndRichardsonLucyTV() - Constructor for class net.imagej.ops.deconvolve.PadAndRichardsonLucyTV
 
padArgs(OpCandidate) - Method in class net.imagej.ops.DefaultOpMatchingService
 
padArgs(OpCandidate) - Method in interface net.imagej.ops.OpMatchingService
Checks the number of args, padding optional args with null as needed.
paddingIntervalCentered(RandomAccessibleInterval<T>, Dimensions) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "paddingIntervalCentered" operation on the given arguments.
PaddingIntervalCentered<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends Interval> - Class in net.imagej.ops.filter.pad
Op used to calculate and return a centered padding interval given an input RAI and the desired padded dimensions
PaddingIntervalCentered() - Constructor for class net.imagej.ops.filter.pad.PaddingIntervalCentered
 
paddingIntervalOrigin(RandomAccessibleInterval<T>, Interval) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "paddingIntervalOrigin" operation on the given arguments.
PaddingIntervalOrigin<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends Interval> - Class in net.imagej.ops.filter.pad
Op used to translate the center of an interval the origin.
PaddingIntervalOrigin() - Constructor for class net.imagej.ops.filter.pad.PaddingIntervalOrigin
 
padFFTInput(RandomAccessibleInterval<T>, Dimensions) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "padInputFFT" filter operation on the given arguments.
padFFTInput(RandomAccessibleInterval<T>, Dimensions, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "padInputFFT" filter operation on the given arguments.
padFFTInput(RandomAccessibleInterval<T>, Dimensions, boolean, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "padInputFFT" filter operation on the given arguments.
padInput(RandomAccessibleInterval<T>, Dimensions) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "padInput" filter operation on the given arguments.
padInput(RandomAccessibleInterval<T>, Dimensions, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "padInput" filter operation on the given arguments.
PadInput<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad
Op used to pad the image by extending the borders
PadInput() - Constructor for class net.imagej.ops.filter.pad.PadInput
 
PadInputFFT<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad
Abstract Op used to pad the image by extending the borders optionally using an "fftSize" op to make the final image size compatible with an FFT library.
PadInputFFT() - Constructor for class net.imagej.ops.filter.pad.PadInputFFT
 
PadInputFFTMethods<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad
Op used to pad the image to a size that is compatible with FFTMethods
PadInputFFTMethods() - Constructor for class net.imagej.ops.filter.pad.PadInputFFTMethods
 
padShiftFFTKernel(RandomAccessibleInterval<T>, Dimensions) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "padShiftFFTKernel" filter operation on the given arguments.
padShiftFFTKernel(RandomAccessibleInterval<T>, Dimensions, boolean) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "padShiftFFTKernel" filter operation on the given arguments.
PadShiftKernel<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad
Op used to pad a kernel and shift the center of the kernel to the origin
PadShiftKernel() - Constructor for class net.imagej.ops.filter.pad.PadShiftKernel
 
PadShiftKernelFFTMethods<T extends ComplexType<T>,I extends RandomAccessibleInterval<T>,O extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.filter.pad
Op used to pad a kernel to a size that is compatible with FFTMethods and shift the center of the kernel to the origin
PadShiftKernelFFTMethods() - Constructor for class net.imagej.ops.filter.pad.PadShiftKernelFFTMethods
 
PaintBrushTool - Class in net.imagej.plugins.tools
Tool implementation for paint brush.
PaintBrushTool() - Constructor for class net.imagej.plugins.tools.PaintBrushTool
 
PaintBrushToolConfig - Class in net.imagej.plugins.tools
Implements the configuration code for PaintBrushTool.
PaintBrushToolConfig() - Constructor for class net.imagej.plugins.tools.PaintBrushToolConfig
 
paintComponent(Graphics) - Method in class net.imagej.ui.swing.SwingColorBar
 
pan(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
pan(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
pan(RealCoords) - Method in interface net.imagej.display.Pannable
Adjusts the pan by the given (X, Y) amount.
pan(IntCoords) - Method in interface net.imagej.display.Pannable
Adjusts the pan by the given (X, Y) amount in panel space.
PanActivator - Class in net.imagej.plugins.tools
Tool for activating the pan tool in response to the space bar.
PanActivator() - Constructor for class net.imagej.plugins.tools.PanActivator
 
panel - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
panel - Variable in class net.imagej.ui.swing.updater.DiffView
 
panelToDataCoords(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
panelToDataCoords(IntCoords) - Method in interface net.imagej.display.ImageCanvas
Converts the given panel coordinates into data coordinates.
Pannable - Interface in net.imagej.display
Defines methods needed to adjust the pan position of a viewport, such as an ImageCanvas.
panReset() - Method in class net.imagej.display.DefaultImageCanvas
 
panReset() - Method in interface net.imagej.display.Pannable
Resets the pan origin to the center of the display.
PanTool - Class in net.imagej.plugins.tools
Tool for panning the display.
PanTool() - Constructor for class net.imagej.plugins.tools.PanTool
 
PanZoomEvent - Class in net.imagej.display.event
An event indicating a pan and/or zoom change has happened to an ImageCanvas.
PanZoomEvent(ImageCanvas) - Constructor for class net.imagej.display.event.PanZoomEvent
 
Parallel - Interface in net.imagej.ops
Base interface for Ops that run across multiple threads.
parameterChanged() - Method in class net.imagej.plugins.commands.restructure.AddData
 
parameterChanged() - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
params() - Method in class net.imagej.omero.ModuleAdapter
Parses script parameters for the associated ImageJ module.
parens(Object[]) - Method in class net.imagej.ops.eval.OpEvaluator
 
parent() - Method in class net.imagej.omero.roi.DefaultOMEROROICollection
 
parent() - Method in class net.imagej.omero.roi.DefaultOMEROROIElement
 
parent() - Method in class net.imagej.omero.roi.LazyROITree
 
parent() - Method in class net.imagej.ops.CustomOpEnvironment
 
parent() - Method in interface net.imagej.ops.OpEnvironment
The parent context, if any.
parent() - Method in interface net.imagej.roi.ROITree
 
parseObject(Object) - Method in class net.imagej.server.services.DefaultJsonService
 
parseObject(Object) - Method in interface net.imagej.server.services.JsonService
Parses the given Object.
Parser() - Constructor for class net.imagej.omero.OMEROFormat.Parser
 
partialDerivative(RandomAccessibleInterval<T>, int) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "partial derivative" operation on the given arguments
partialDerivative(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, int) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "partial derivative" operation on the given arguments
PartialDerivativeRAI<T extends RealType<T>> - Class in net.imagej.ops.filter.derivative
Calculates the derivative (with sobel kernel) of an image in a given dimension.
PartialDerivativeRAI() - Constructor for class net.imagej.ops.filter.derivative.PartialDerivativeRAI
 
PartialDerivativesRAI<T extends RealType<T>> - Class in net.imagej.ops.filter.derivative
Convenience op for partial derivatives.
PartialDerivativesRAI() - Constructor for class net.imagej.ops.filter.derivative.PartialDerivativesRAI
 
particleAnalyzerFill(long, long, long[], double, double, DrawingTool, RealRect) - Method in class net.imagej.FloodFiller
In IJ1 this method is used by the particle analyzer to remove interior holes from particle masks.
particularEquation() - Method in interface net.imagej.axis.CalibratedAxis
Gets the particular equation representing values along this axis; for instance: y = (14)*x + (4).
particularEquation() - Method in class net.imagej.axis.EnumeratedAxis
 
particularEquation() - Method in class net.imagej.axis.VariableAxis
 
patchIJ1(ClassLoader) - Static method in class net.imagej.launcher.ClassLauncher
 
patchInfoPList(File, String) - Static method in class net.imagej.updater.util.UpdaterUtil
 
pearsons(Iterable<T>, Iterable<U>) - Method in class net.imagej.ops.coloc.ColocNamespace
 
PencilTool - Class in net.imagej.plugins.tools
Tool implementation for pencil.
PencilTool() - Constructor for class net.imagej.plugins.tools.PencilTool
 
PencilToolConfig - Class in net.imagej.plugins.tools
Implements the configuration code for PencilTool.
PencilToolConfig() - Constructor for class net.imagej.plugins.tools.PencilToolConfig
 
percentile(Iterable<T>, double) - Method in class net.imagej.ops.stats.StatsNamespace
 
percentile(O, Iterable<T>, double) - Method in class net.imagej.ops.stats.StatsNamespace
 
Percentile() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Percentile
 
percentile(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
percentile(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
percentile(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
percentile(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
percentile(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
percentile(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
PerformanceProfiler - Class in net.imagej.patcher
A Javassist-backed performance profiler.
PerformanceProfiler() - Constructor for class net.imagej.patcher.PerformanceProfiler
The constructor.
PermuteCoordinateInverseViewOfDimension<T> - Class in net.imagej.ops.transform.permuteCoordinatesInverseView
PermuteCoordinateInverseViewOfDimension() - Constructor for class net.imagej.ops.transform.permuteCoordinatesInverseView.PermuteCoordinateInverseViewOfDimension
 
permuteCoordinatesInverseView(RandomAccessibleInterval<T>, int[], int) - Method in class net.imagej.ops.transform.TransformNamespace
Inverse bijective permutation of the integer coordinates of one dimension of a RandomAccessibleInterval.
permuteCoordinatesInverseView(RandomAccessibleInterval<T>, int...) - Method in class net.imagej.ops.transform.TransformNamespace
Inverse Bijective permutation of the integer coordinates in each dimension of a RandomAccessibleInterval.
permuteCoordinatesView(RandomAccessibleInterval<T>, int...) - Method in class net.imagej.ops.transform.TransformNamespace
Bijective permutation of the integer coordinates in each dimension of a RandomAccessibleInterval.
permuteCoordinatesView(RandomAccessibleInterval<T>, int[], int) - Method in class net.imagej.ops.transform.TransformNamespace
Bijective permutation of the integer coordinates of one dimension of a RandomAccessibleInterval.
PermuteCoordinatesViewOfDimension<T> - Class in net.imagej.ops.transform.permuteCoordinatesView
PermuteCoordinatesViewOfDimension() - Constructor for class net.imagej.ops.transform.permuteCoordinatesView.PermuteCoordinatesViewOfDimension
 
permuteView(RandomAccessible<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace
Create view with permuted axes.
permuteView(RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace
Create view with permuted axes while preserving interval bounds.
phase(IterableInterval<T>, int, int) - Method in class net.imagej.ops.features.zernike.ZernikeNamespace
 
phase(O, IterableInterval<T>, int, int) - Method in class net.imagej.ops.features.zernike.ZernikeNamespace
 
PI() - Method in class net.imagej.types.BigComplex
Fills self with the representation of pi for the given type.
pickNewest(List<Checksummer.StringAndFile>) - Static method in class net.imagej.updater.Checksummer
 
PixelProbe - Class in net.imagej.plugins.tools
Displays pixel values under the cursor.
PixelProbe() - Constructor for class net.imagej.plugins.tools.PixelProbe
 
PixelRecorder - Class in net.imagej.plugins.tools
Gathers pixel information (location, channel values) of pixel associated with a given mouse event.
PixelRecorder(Context, boolean) - Constructor for class net.imagej.plugins.tools.PixelRecorder
Constructor
Placeholder - Class in net.imagej.omero.legacy
 
Placeholder() - Constructor for class net.imagej.omero.legacy.Placeholder
 
plain - Variable in class net.imagej.ui.swing.updater.FileTable
 
PlanarCommand - Interface in net.imagej.command
Interface marking commands that can be toggled to run on the current plane, instead of a complete image.
planeCount(ImgPlus<?>) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Returns the number of planes present in an ImgPlus
platform - Variable in class net.imagej.updater.util.UpdaterUtil
 
platformForLauncher(String) - Static method in class net.imagej.updater.util.UpdaterUtil
 
platforms - Variable in class net.imagej.updater.util.UpdaterUtil
 
playSong() - Method in class net.imagej.plugins.commands.debug.ButtonDemo
 
plot(Histogram1d<?>...) - Static method in class net.imagej.notebook.chart.Charts
 
plot(List<Histogram1d<?>>) - Static method in class net.imagej.notebook.chart.Charts
 
PLYMeshIO - Class in net.imagej.mesh.io.ply
A plugin for reading and writing PLY files.
PLYMeshIO() - Constructor for class net.imagej.mesh.io.ply.PLYMeshIO
 
PNGObject - Interface in net.imagej.notebook.mime
An object that knows how to base64-encode itself as a PNG image.
pnpoly(List<Point2D.Double>, RealLocalizable) - Static method in class net.imagej.omero.roi.polyshape.Polyshapes
 
pnpolyWithBoundary(List<Point2D.Double>, RealLocalizable, boolean) - Static method in class net.imagej.omero.roi.polyshape.Polyshapes
 
point(RealLocalizable) - Static method in class net.imagej.omero.roi.polyshape.Polyshapes
 
PointFigure - Class in net.imagej.ui.swing.overlay
Implementation of a point as a JHotDraw figure.
PointFigure() - Constructor for class net.imagej.ui.swing.overlay.PointFigure
 
PointFigure(double[]) - Constructor for class net.imagej.ui.swing.overlay.PointFigure
 
PointFigure(List<double[]>) - Constructor for class net.imagej.ui.swing.overlay.PointFigure
 
PointJHotDrawOverlay - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for point tool.
PointJHotDrawOverlay() - Constructor for class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
pointMask(double[]) - Method in interface net.imagej.roi.ROIService
Creates a WritablePointMask at the given location.
pointMask(RealLocalizable) - Method in interface net.imagej.roi.ROIService
Creates a WritablePointMask at the given location.
PointMaskToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point
Converts a PointMask to a PointRoi.
PointMaskToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.PointMaskToPointRoiConverter
 
PointMaskWrapper - Class in net.imagej.legacy.convert.roi.point
A PointRoi with an associated WritablePointMask.
PointMaskWrapper(WritablePointMask) - Constructor for class net.imagej.legacy.convert.roi.point.PointMaskWrapper
 
PointOverlay - Class in net.imagej.overlay
Represents a user specified collection of points
PointOverlay() - Constructor for class net.imagej.overlay.PointOverlay
 
PointOverlay(Context) - Constructor for class net.imagej.overlay.PointOverlay
 
PointOverlay(Context, List<double[]>) - Constructor for class net.imagej.overlay.PointOverlay
 
PointOverlay(Context, double[]) - Constructor for class net.imagej.overlay.PointOverlay
 
PointRoiToRealPointCollectionConverter - Class in net.imagej.legacy.convert.roi.point
Converts an ImageJ 1.x PointRoi to an ImgLib2 RealPointCollection.
PointRoiToRealPointCollectionConverter() - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter
 
PointRoiToRealPointCollectionOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PointRoiToRealPointCollectionOMEROConverter
 
PointRoiWrapper - Class in net.imagej.legacy.convert.roi.point
Wraps an ImageJ 1.x PointRoi as an ImgLib2 RealPointCollection.
PointRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper
Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.
PointRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper
Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.
PointRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper
Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.
PointRoiWrapper(FloatPolygon) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper
Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.
PointRoiWrapper(Polygon) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper
Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.
PointRoiWrapper(int, int) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper
Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.
PointRoiWrapper(double, double) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper
Creates an ImageJ 1.x PointRoi and wraps it as an ImgLib2 RealPointCollection.
PointRoiWrapper(PointRoi) - Constructor for class net.imagej.legacy.convert.roi.point.PointRoiWrapper
Wraps the given ImageJ 1.x PointRoi as an ImgLib2 RealPointCollection.
points() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
 
PointSetDemo - Class in net.imagej.plugins.commands.debug
A test of TextSpecifiedPointSets
PointSetDemo() - Constructor for class net.imagej.plugins.commands.debug.PointSetDemo
 
PointsIOPlugin - Interface in net.imagej.mesh.io
A plugin which reads and/or writes point clouds as List<RealLocalizable> objects.
polygon2D(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService
Creates a WritablePolygon2D with unspecified boundary behavior.
polygon2D(double[], double[]) - Method in interface net.imagej.roi.ROIService
Creates a WritablePolygon2D with unspecified boundary behavior.
Polygon2DToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi.polygon2d
Converts a Polygon2D to a PolygonRoi of type POLYGON.
Polygon2DToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.Polygon2DToPolygonRoiConverter
 
Polygon2DWrapper - Class in net.imagej.legacy.convert.roi.polygon2d
A PolygonRoi with an associated WritablePolygon2D.
Polygon2DWrapper(WritablePolygon2D) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper
 
PolygonFigure - Class in net.imagej.ui.swing.overlay
TODO
PolygonFigure() - Constructor for class net.imagej.ui.swing.overlay.PolygonFigure
 
PolygonJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for polygon/freehand overlays.
PolygonJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
PolygonNodeHandle - Class in net.imagej.ui.swing.overlay
The BezierFigure uses a BezierNodeHandle which can change the curve connecting vertices from a line to a Bezier curve.
PolygonNodeHandle(BezierFigure, int, Figure) - Constructor for class net.imagej.ui.swing.overlay.PolygonNodeHandle
 
PolygonNodeHandle(BezierFigure, int) - Constructor for class net.imagej.ui.swing.overlay.PolygonNodeHandle
 
PolygonOverlay - Class in net.imagej.overlay
TODO
PolygonOverlay() - Constructor for class net.imagej.overlay.PolygonOverlay
 
PolygonOverlay(Context) - Constructor for class net.imagej.overlay.PolygonOverlay
 
PolygonRoiToPolygon2DConverter - Class in net.imagej.legacy.convert.roi.polygon2d
Converts an ImageJ 1.x PolygonRoi of type: Roi.POLYGON Roi.TRACED_ROI Roi.FREEROI to an ImgLib2 Polygon2D.
PolygonRoiToPolygon2DConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter
 
PolygonRoiToPolygon2DOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolygonRoiToPolygon2DOMEROConverter
 
PolygonRoiWrapper - Class in net.imagej.legacy.convert.roi.polygon2d
Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.
PolygonRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.
PolygonRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.
PolygonRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polygon2D.
PolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.
PolygonRoiWrapperToPolygonData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolygonRoiWrapperToPolygonData
 
polyline(List<? extends RealLocalizable>) - Method in interface net.imagej.roi.ROIService
Creates a WritablePolyline containing the given vertices, in the given order.
PolylineFigure - Class in net.imagej.ui.swing.overlay
JHotDraw Figure for a multi-segmented line
PolylineFigure() - Constructor for class net.imagej.ui.swing.overlay.PolylineFigure
 
PolylineJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for multi-segmented lines
PolylineJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
PolylineRoiToPolylineConverter - Class in net.imagej.legacy.convert.roi.polyline
Converts an ImageJ 1.x PolygonRoi to an ImgLib2 Polyline.
PolylineRoiToPolylineConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter
 
PolylineRoiToPolylineOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolylineRoiToPolylineOMEROConverter
 
PolylineRoiToRealMaskRealIntervalConverter - Class in net.imagej.legacy.convert.roi.polyline
Converts an ImageJ 1.x PolygonRoi to an ImgLib2 RealMaskRealInterval.
PolylineRoiToRealMaskRealIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter
 
PolylineRoiToRealMaskRealIntervalOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.PolylineRoiToRealMaskRealIntervalOMEROConverter
 
PolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline
Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.
PolylineRoiWrapper(int[], int[], int) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.
PolylineRoiWrapper(float[], float[], int) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.
PolylineRoiWrapper(float[], float[]) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
Creates an ImageJ 1.x PolygonRoi and wraps it as an ImgLib2 Polyline.
PolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.
PolylineRoiWrapperToPolylineData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.PolylineRoiWrapperToPolylineData
 
PolylineToPolylineRoiConverter - Class in net.imagej.legacy.convert.roi.polyline
Converts an Polyline to an PolygonRoi of type POLYLINE.
PolylineToPolylineRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineToPolylineRoiConverter
 
PolylineWrapper - Class in net.imagej.legacy.convert.roi.polyline
A PolygonRoi with an associated WritablePolyline.
PolylineWrapper(WritablePolyline) - Constructor for class net.imagej.legacy.convert.roi.polyline.PolylineWrapper
 
Polynom - Class in net.imagej.ops.features.zernike.helper
class used to represent a zernike moment polynomial.
Polynom(int) - Constructor for class net.imagej.ops.features.zernike.helper.Polynom
default constructor.
PolynomialAxis - Class in net.imagej.axis
PolynomialAxis is a CalibratedAxis that scale nonlinearly as a polynomial of degree >= 2.
PolynomialAxis() - Constructor for class net.imagej.axis.PolynomialAxis
 
PolynomialAxis(AxisType, String, double...) - Constructor for class net.imagej.axis.PolynomialAxis
 
Polyshapes - Class in net.imagej.omero.roi.polyshape
Utility class for polygon
Polyshapes() - Constructor for class net.imagej.omero.roi.polyshape.Polyshapes
 
POMParser - Class in net.imagej.updater
A helper class to read information from Maven-built .jar files.
POMParser(FileObject) - Constructor for class net.imagej.updater.POMParser
 
populateImageJColumn(Class<?>, Object[], Column<?>) - Static method in class net.imagej.omero.TableUtils
 
populateImageMetadata() - Method in class net.imagej.omero.OMEROFormat.Metadata
 
populateInput(Module, ModuleItem<?>, File) - Method in class net.imagej.batch.input.DatasetBatchInputProvider
 
populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
populateInputCandidates(Collection<Object>) - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter
 
populateOMEROColumn(Column<?>, ConvertService) - Static method in class net.imagej.omero.TableUtils
 
Port() - Constructor for class net.imagej.legacy.LegacyCommandline.Port
 
pos(Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
Position - Class in net.imagej
A Position is used to move within a given reference Extents object.
Position(Extents) - Constructor for class net.imagej.Position
Constructor - takes an Extents object that represents the parent space to iterate within.
Position(Position) - Constructor for class net.imagej.Position
Constructs a position that is a copy of the given position.
PositionableByAxis - Interface in net.imagej
An element that is Positionable and Localizable in N-dimensional discrete space, by both dimension number and axis type.
positionChanged() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
 
PositionHarmonizer - Class in net.imagej.legacy.translate
This class is responsible for harmonizing slider position values (and active plane position) between legacy ImageJ and modern ImageJ.
PositionHarmonizer() - Constructor for class net.imagej.legacy.translate.PositionHarmonizer
 
pow(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
pow(BigComplex) - Method in class net.imagej.types.BigComplex
 
pow(double) - Method in class net.imagej.types.BigComplex
 
pow(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
pow(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
pow(int) - Method in class net.imagej.types.PreciseFixedFloatType
 
pow(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
pow(double) - Method in class net.imagej.types.PreciseFixedFloatType
 
pow(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
pow(double) - Method in class net.imagej.types.UnboundedIntegerType
 
power(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
power(O, I, double) - Method in class net.imagej.ops.math.MathNamespace
 
PowerAxis - Class in net.imagej.axis
PowerAxis is a CalibratedAxis that scales raw values by the equation y = a + b*x^c.
PowerAxis(double) - Constructor for class net.imagej.axis.PowerAxis
 
PowerAxis(AxisType, double) - Constructor for class net.imagej.axis.PowerAxis
 
PowerAxis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.PowerAxis
 
PowerConstant() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.PowerConstant
 
PowerDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by raising input Dataset values to a user defined constant value power.
PowerDataValues() - Constructor for class net.imagej.plugins.commands.assign.PowerDataValues
 
PreciseFixedComplexFloatType - Class in net.imagej.types
A fixed point complex float type.
PreciseFixedComplexFloatType() - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
 
PreciseFixedComplexFloatType(double, double) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
 
PreciseFixedComplexFloatType(BigDecimal, BigDecimal) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
 
PreciseFixedComplexFloatType(String, String) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
 
PreciseFixedComplexFloatType(PreciseFixedComplexFloatType) - Constructor for class net.imagej.types.PreciseFixedComplexFloatType
 
PreciseFixedFloatType - Class in net.imagej.types
A fixed point floating numeric type.
PreciseFixedFloatType() - Constructor for class net.imagej.types.PreciseFixedFloatType
 
PreciseFixedFloatType(long) - Constructor for class net.imagej.types.PreciseFixedFloatType
 
PreciseFixedFloatType(double) - Constructor for class net.imagej.types.PreciseFixedFloatType
 
PreciseFixedFloatType(BigInteger) - Constructor for class net.imagej.types.PreciseFixedFloatType
 
PreciseFixedFloatType(BigDecimal) - Constructor for class net.imagej.types.PreciseFixedFloatType
 
PreciseFixedFloatType(String) - Constructor for class net.imagej.types.PreciseFixedFloatType
 
PreciseFixedFloatType(PreciseFixedFloatType) - Constructor for class net.imagej.types.PreciseFixedFloatType
 
Preferences - Class in net.imagej.app
Displays the preferences dialog.
Preferences() - Constructor for class net.imagej.app.Preferences
 
prefix(FileObject) - Method in class net.imagej.updater.FilesCollection
 
prefix(String) - Method in class net.imagej.updater.FilesCollection
 
prefixUpdate(String) - Method in class net.imagej.updater.FilesCollection
 
prefs() - Method in class net.imagej.app.ImageJApp
 
prefs() - Method in class net.imagej.legacy.LegacyImageJApp
 
PREFS_USER - Static variable in class net.imagej.updater.util.UpdaterUtil
 
preinit() - Static method in class imagej.patcher.LegacyInjector
Deprecated.
 
preinit(ClassLoader) - Static method in class imagej.patcher.LegacyInjector
Deprecated.
 
preinit() - Static method in class net.imagej.legacy.LegacyService
Deprecated.
preinit() - Static method in class net.imagej.patcher.LegacyInjector
 
preinit(ClassLoader) - Static method in class net.imagej.patcher.LegacyInjector
 
premain(String, Instrumentation) - Static method in class net.imagej.patcher.JavaAgent
The premain method started at JVM startup.
prepend(String[], String...) - Static method in class net.imagej.launcher.ClassLauncher
 
prettyPrintTimestamp(long) - Static method in class net.imagej.updater.util.UpdaterUtil
 
preview - Variable in class net.imagej.plugins.commands.assign.MathCommand
 
preview() - Method in class net.imagej.plugins.commands.assign.MathCommand
 
preview() - Method in class net.imagej.plugins.commands.debug.MandelbrotSetImage
 
preview() - Method in class net.imagej.plugins.commands.display.ChannelsTool
 
preview() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
previewRunning(boolean) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
previewRunning(boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
previous - Variable in class net.imagej.updater.FileObject
 
PrimitiveLogic - Class in net.imagej.ops.logic
Generated logical ops with primitive types.
PrimitiveLogic.BooleanAnd - Class in net.imagej.ops.logic
Op that computes the logical AND (&&) of two boolean values.
PrimitiveLogic.BooleanEqual - Class in net.imagej.ops.logic
Op that tests for equality (==) between two boolean values.
PrimitiveLogic.BooleanNot - Class in net.imagej.ops.logic
Op that computes the logical NOT (!) of a boolean value.
PrimitiveLogic.BooleanNotEqual - Class in net.imagej.ops.logic
Op that tests for inequality (!=) between two boolean values.
PrimitiveLogic.BooleanOr - Class in net.imagej.ops.logic
Op that computes the logical OR (||) of two boolean values.
PrimitiveLogic.BooleanXor - Class in net.imagej.ops.logic
Op that computes the logical XOR (^) of two boolean values.
PrimitiveLogic.DoubleEqual - Class in net.imagej.ops.logic
Op that tests for equality (==) between two double values.
PrimitiveLogic.DoubleGreaterThan - Class in net.imagej.ops.logic
Op that performs a greater-than (>) comparison on two double values.
PrimitiveLogic.DoubleGreaterThanOrEqual - Class in net.imagej.ops.logic
Op that performs a greater-than-or-equal (>=) comparison on two double values.
PrimitiveLogic.DoubleLessThan - Class in net.imagej.ops.logic
Op that performs a less-than (<) comparison on two double values.
PrimitiveLogic.DoubleLessThanOrEqual - Class in net.imagej.ops.logic
Op that performs a less-than-or-equal (<=) comparison on two double values.
PrimitiveLogic.DoubleNotEqual - Class in net.imagej.ops.logic
Op that tests for inequality (!=) between two double values.
PrimitiveLogic.FloatEqual - Class in net.imagej.ops.logic
Op that tests for equality (==) between two float values.
PrimitiveLogic.FloatGreaterThan - Class in net.imagej.ops.logic
Op that performs a greater-than (>) comparison on two float values.
PrimitiveLogic.FloatGreaterThanOrEqual - Class in net.imagej.ops.logic
Op that performs a greater-than-or-equal (>=) comparison on two float values.
PrimitiveLogic.FloatLessThan - Class in net.imagej.ops.logic
Op that performs a less-than (<) comparison on two float values.
PrimitiveLogic.FloatLessThanOrEqual - Class in net.imagej.ops.logic
Op that performs a less-than-or-equal (<=) comparison on two float values.
PrimitiveLogic.FloatNotEqual - Class in net.imagej.ops.logic
Op that tests for inequality (!=) between two float values.
PrimitiveLogic.IntegerEqual - Class in net.imagej.ops.logic
Op that tests for equality (==) between two int values.
PrimitiveLogic.IntegerGreaterThan - Class in net.imagej.ops.logic
Op that performs a greater-than (>) comparison on two int values.
PrimitiveLogic.IntegerGreaterThanOrEqual - Class in net.imagej.ops.logic
Op that performs a greater-than-or-equal (>=) comparison on two int values.
PrimitiveLogic.IntegerLessThan - Class in net.imagej.ops.logic
Op that performs a less-than (<) comparison on two int values.
PrimitiveLogic.IntegerLessThanOrEqual - Class in net.imagej.ops.logic
Op that performs a less-than-or-equal (<=) comparison on two int values.
PrimitiveLogic.IntegerNotEqual - Class in net.imagej.ops.logic
Op that tests for inequality (!=) between two int values.
PrimitiveLogic.LongEqual - Class in net.imagej.ops.logic
Op that tests for equality (==) between two long values.
PrimitiveLogic.LongGreaterThan - Class in net.imagej.ops.logic
Op that performs a greater-than (>) comparison on two long values.
PrimitiveLogic.LongGreaterThanOrEqual - Class in net.imagej.ops.logic
Op that performs a greater-than-or-equal (>=) comparison on two long values.
PrimitiveLogic.LongLessThan - Class in net.imagej.ops.logic
Op that performs a less-than (<) comparison on two long values.
PrimitiveLogic.LongLessThanOrEqual - Class in net.imagej.ops.logic
Op that performs a less-than-or-equal (<=) comparison on two long values.
PrimitiveLogic.LongNotEqual - Class in net.imagej.ops.logic
Op that tests for inequality (!=) between two long values.
PrimitiveMath - Class in net.imagej.ops.math
Generated arithmetic ops with primitive types.
PrimitiveMath.DoubleAbs - Class in net.imagej.ops.math
Op that computes the absolute value of a double value.
PrimitiveMath.DoubleAdd - Class in net.imagej.ops.math
Op that adds (+) two double values.
PrimitiveMath.DoubleArccos - Class in net.imagej.ops.math
Op that computes the arccosine of a double value.
PrimitiveMath.DoubleArcsin - Class in net.imagej.ops.math
Op that computes the arcsine of a double value.
PrimitiveMath.DoubleArctan - Class in net.imagej.ops.math
Op that computes the arctangent of a double value.
PrimitiveMath.DoubleCeil - Class in net.imagej.ops.math
Op that computes the ceiling of a double value.
PrimitiveMath.DoubleCos - Class in net.imagej.ops.math
Op that computes the cosine of a double value.
PrimitiveMath.DoubleCosh - Class in net.imagej.ops.math
Op that computes the hyperbolic cosine of a double value.
PrimitiveMath.DoubleCubeRoot - Class in net.imagej.ops.math
Op that computes the cubic root of a double value.
PrimitiveMath.DoubleDivide - Class in net.imagej.ops.math
Op that divides (/) two double values.
PrimitiveMath.DoubleExp - Class in net.imagej.ops.math
Op that computes the natural exponent of a double value.
PrimitiveMath.DoubleFloor - Class in net.imagej.ops.math
Op that computes the floor of a double value.
PrimitiveMath.DoubleLog - Class in net.imagej.ops.math
Op that computes the natural logarithm of a double value.
PrimitiveMath.DoubleLog10 - Class in net.imagej.ops.math
Op that computes the base 10 logarithm of a double value.
PrimitiveMath.DoubleLogOnePlusX - Class in net.imagej.ops.math
Op that computes the natural logarithm of one plus a double value.
PrimitiveMath.DoubleMax - Class in net.imagej.ops.math
Op that computes the maximum of two double values.
PrimitiveMath.DoubleMin - Class in net.imagej.ops.math
Op that computes the minimum of two double values.
PrimitiveMath.DoubleMultiply - Class in net.imagej.ops.math
Op that multiplies (*) two double values.
PrimitiveMath.DoubleNegate - Class in net.imagej.ops.math
Op that negates (-) a double value.
PrimitiveMath.DoublePower - Class in net.imagej.ops.math
Op that exponentiate two double values.
PrimitiveMath.DoubleRemainder - Class in net.imagej.ops.math
Op that computes the remainder (%) of two double values.
PrimitiveMath.DoubleRound - Class in net.imagej.ops.math
Op that rounds a double value.
PrimitiveMath.DoubleSignum - Class in net.imagej.ops.math
Op that computes the signum of a double value.
PrimitiveMath.DoubleSin - Class in net.imagej.ops.math
Op that computes the sine of a double value.
PrimitiveMath.DoubleSinh - Class in net.imagej.ops.math
Op that computes the hyperbolic sine of a double value.
PrimitiveMath.DoubleSqrt - Class in net.imagej.ops.math
Op that computes the square root of a double value.
PrimitiveMath.DoubleSubtract - Class in net.imagej.ops.math
Op that subtracts (-) two double values.
PrimitiveMath.DoubleTan - Class in net.imagej.ops.math
Op that computes the tangent of a double value.
PrimitiveMath.DoubleTanh - Class in net.imagej.ops.math
Op that computes the hyperbolic tangent of a double value.
PrimitiveMath.FloatAbs - Class in net.imagej.ops.math
Op that computes the absolute value of a float value.
PrimitiveMath.FloatAdd - Class in net.imagej.ops.math
Op that adds (+) two float values.
PrimitiveMath.FloatDivide - Class in net.imagej.ops.math
Op that divides (/) two float values.
PrimitiveMath.FloatMax - Class in net.imagej.ops.math
Op that computes the maximum of two float values.
PrimitiveMath.FloatMin - Class in net.imagej.ops.math
Op that computes the minimum of two float values.
PrimitiveMath.FloatMultiply - Class in net.imagej.ops.math
Op that multiplies (*) two float values.
PrimitiveMath.FloatNegate - Class in net.imagej.ops.math
Op that negates (-) a float value.
PrimitiveMath.FloatRemainder - Class in net.imagej.ops.math
Op that computes the remainder (%) of two float values.
PrimitiveMath.FloatRound - Class in net.imagej.ops.math
Op that rounds a float value.
PrimitiveMath.FloatSignum - Class in net.imagej.ops.math
Op that computes the signum of a float value.
PrimitiveMath.FloatSubtract - Class in net.imagej.ops.math
Op that subtracts (-) two float values.
PrimitiveMath.IntegerAbs - Class in net.imagej.ops.math
Op that computes the absolute value of a int value.
PrimitiveMath.IntegerAdd - Class in net.imagej.ops.math
Op that adds (+) two int values.
PrimitiveMath.IntegerAnd - Class in net.imagej.ops.math
Op that computes the bitwise AND (&) of two int values.
PrimitiveMath.IntegerComplement - Class in net.imagej.ops.math
Op that computes the bitwise complement (~) of a int value.
PrimitiveMath.IntegerDivide - Class in net.imagej.ops.math
Op that divides (/) two int values.
PrimitiveMath.IntegerLeftShift - Class in net.imagej.ops.math
Op that computes the signed left shift (<<) of two int values.
PrimitiveMath.IntegerMax - Class in net.imagej.ops.math
Op that computes the maximum of two int values.
PrimitiveMath.IntegerMin - Class in net.imagej.ops.math
Op that computes the minimum of two int values.
PrimitiveMath.IntegerMultiply - Class in net.imagej.ops.math
Op that multiplies (*) two int values.
PrimitiveMath.IntegerNegate - Class in net.imagej.ops.math
Op that negates (-) a int value.
PrimitiveMath.IntegerOr - Class in net.imagej.ops.math
Op that computes the bitwise OR (|) of two int values.
PrimitiveMath.IntegerRemainder - Class in net.imagej.ops.math
Op that computes the remainder (%) of two int values.
PrimitiveMath.IntegerRightShift - Class in net.imagej.ops.math
Op that computes the signed right shift (>>) of two int values.
PrimitiveMath.IntegerSubtract - Class in net.imagej.ops.math
Op that subtracts (-) two int values.
PrimitiveMath.IntegerUnsignedRightShift - Class in net.imagej.ops.math
Op that computes the unsigned right shift (>>>) of two int values.
PrimitiveMath.IntegerXor - Class in net.imagej.ops.math
Op that computes the bitwise XOR (^) of two int values.
PrimitiveMath.LongAbs - Class in net.imagej.ops.math
Op that computes the absolute value of a long value.
PrimitiveMath.LongAdd - Class in net.imagej.ops.math
Op that adds (+) two long values.
PrimitiveMath.LongAnd - Class in net.imagej.ops.math
Op that computes the bitwise AND (&) of two long values.
PrimitiveMath.LongComplement - Class in net.imagej.ops.math
Op that computes the bitwise complement (~) of a long value.
PrimitiveMath.LongDivide - Class in net.imagej.ops.math
Op that divides (/) two long values.
PrimitiveMath.LongLeftShift - Class in net.imagej.ops.math
Op that computes the signed left shift (<<) of two long values.
PrimitiveMath.LongMax - Class in net.imagej.ops.math
Op that computes the maximum of two long values.
PrimitiveMath.LongMin - Class in net.imagej.ops.math
Op that computes the minimum of two long values.
PrimitiveMath.LongMultiply - Class in net.imagej.ops.math
Op that multiplies (*) two long values.
PrimitiveMath.LongNegate - Class in net.imagej.ops.math
Op that negates (-) a long value.
PrimitiveMath.LongOr - Class in net.imagej.ops.math
Op that computes the bitwise OR (|) of two long values.
PrimitiveMath.LongRemainder - Class in net.imagej.ops.math
Op that computes the remainder (%) of two long values.
PrimitiveMath.LongRightShift - Class in net.imagej.ops.math
Op that computes the signed right shift (>>) of two long values.
PrimitiveMath.LongSubtract - Class in net.imagej.ops.math
Op that subtracts (-) two long values.
PrimitiveMath.LongUnsignedRightShift - Class in net.imagej.ops.math
Op that computes the unsigned right shift (>>>) of two long values.
PrimitiveMath.LongXor - Class in net.imagej.ops.math
Op that computes the bitwise XOR (^) of two long values.
print(String, String) - Method in class net.imagej.updater.util.StderrProgress
 
printJarsForClass(Class2JarFilesMap, String, boolean) - Static method in class net.imagej.updater.util.Class2JarFilesMap
 
println(String) - Method in class net.imagej.ui.swing.updater.DiffView
Colorize one line of output.
PRIORITY - Static variable in class net.imagej.app.ImageJApp
 
PRIORITY - Static variable in class net.imagej.plugins.tools.ArrowTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.BgColorTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.FgColorTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.FloodFillTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.PaintBrushTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.PanTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.PencilTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.SprayCanTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.WandTool
 
PRIORITY - Static variable in class net.imagej.plugins.tools.ZoomTool
 
PRIORITY - Static variable in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
PRIORITY - Static variable in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingAngleTool
 
PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingEllipseTool
 
PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingLineTool
 
PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingPointTool
 
PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingPolygonTool
 
PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingPolylineTool
 
PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingRectangleTool
 
PRIORITY - Static variable in class net.imagej.ui.swing.tools.SwingTextTool
 
process(Module) - Method in class net.imagej.display.process.SingleInputPreprocessor
 
process(Module) - Method in class net.imagej.legacy.plugin.ActiveImagePlusPreprocessor
 
process(Module) - Method in class net.imagej.legacy.plugin.MacroPreprocessor
 
process(Module) - Method in class net.imagej.legacy.plugin.MacroRecorderPostprocessor
 
process(Module) - Method in class net.imagej.legacy.plugin.MacroRecorderPreprocessor
 
process(Module) - Method in class net.imagej.legacy.plugin.OverlayPreprocessor
 
process(Module) - Method in class net.imagej.legacy.plugin.ResultsTablePreprocessor
 
process(Module) - Method in class net.imagej.legacy.plugin.RoiManagerPreprocessor
 
process() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
process() - Method in interface net.imagej.minmax.MinMaxMethod
Begins searching the target interval for minimum and maximum values.
process(Module) - Method in class net.imagej.omero.legacy.ActiveROIPostprocessor
 
process(Module) - Method in class net.imagej.omero.legacy.AttachROIPostprocessor
 
process(Module) - Method in class net.imagej.omero.legacy.CacheROIPostprocessor
 
process(Module) - Method in class net.imagej.ops.NamespacePreprocessor
 
process(Module) - Method in class net.imagej.ops.OpEnvironmentPreprocessor
 
process() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm
 
process() - Method in class net.imagej.plugins.commands.rotate.XYFlipper
Fills the output image from the input image doing coordinate transformations as needed
process(Module) - Method in class net.imagej.server.resources.ModulesResource.InitializablePreprocessor
 
progress - Variable in class net.imagej.updater.CommandLine
 
progress - Variable in class net.imagej.updater.util.AbstractProgressable
 
Progress - Interface in net.imagej.updater.util
A progress dialog abstraction.
Progressable - Interface in net.imagej.updater.util
Base interface for serving Progress instances.
ProgressDialog - Class in net.imagej.ui.swing.updater
TODO
ProgressDialog(Frame) - Constructor for class net.imagej.ui.swing.updater.ProgressDialog
 
ProgressDialog(Frame, String) - Constructor for class net.imagej.ui.swing.updater.ProgressDialog
 
project(OMERORealMask<?>, TypedSpace<? extends TypedAxis>) - Method in class net.imagej.omero.roi.project.DefaultOMEROROIProjector
 
project(I, TypedSpace<? extends TypedAxis>) - Method in interface net.imagej.omero.roi.project.OMEROROIProjector
 
project(IterableInterval<V>, RandomAccessibleInterval<T>, UnaryComputerOp<Iterable<T>, V>, int) - Method in class net.imagej.ops.transform.TransformNamespace
Executes the "project" operation on the given arguments.
ProjectCommand<T extends RealType<T>> - Class in net.imagej.ops.commands.project
 
ProjectCommand() - Constructor for class net.imagej.ops.commands.project.ProjectCommand
 
ProjectedOMERORealMask<S extends ShapeData> - Class in net.imagej.omero.roi.project
An OMERORealMask which has been adapted to a given space.
ProjectedOMERORealMask(OMERORealMask<S>, AnnotatedSpace<? extends TypedAxis>) - Constructor for class net.imagej.omero.roi.project.ProjectedOMERORealMask
 
ProjectedOMERORealMaskToShapeData - Class in net.imagej.omero.roi.project
ProjectedOMERORealMaskToShapeData() - Constructor for class net.imagej.omero.roi.project.ProjectedOMERORealMaskToShapeData
 
projectIntoSpace(TypedSpace<? extends TypedAxis>) - Method in class net.imagej.omero.roi.DefaultOMEROROIElement
 
projectIntoSpace(TypedSpace<? extends TypedAxis>) - Method in interface net.imagej.omero.roi.OMEROROIElement
 
ProjectMethod<T extends RealType<T>> - Interface in net.imagej.ops.commands.project
Interface marking functions that can be used within the ProjectCommand.
ProjectRAIToII<T,V> - Class in net.imagej.ops.transform.project
 
ProjectRAIToII() - Constructor for class net.imagej.ops.transform.project.ProjectRAIToII
 
ProjectRAIToIterableInterval<T,V> - Class in net.imagej.ops.transform.project
 
ProjectRAIToIterableInterval() - Constructor for class net.imagej.ops.transform.project.ProjectRAIToIterableInterval
 
prompt() - Method in class net.imagej.legacy.ui.LegacyDialogPrompt
 
PromptUserToUpdate - Class in net.imagej.updater
This plugin prompts the user to launch the updater due to available updates.
PromptUserToUpdate() - Constructor for class net.imagej.updater.PromptUserToUpdate
 
promptYesNo(String, String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
promptYesNo(String, String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
promptYesNo(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
promptYesNo(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
properties() - Method in class net.imagej.ops.search.OpSearchResult
 
protocolsMissingUploaders(UploaderService, Progress) - Method in class net.imagej.updater.FilesCollection
 
prototype(Class<?>) - Method in class net.imagej.omero.DefaultOMEROService
 
prototype(Class<?>) - Method in interface net.imagej.omero.OMEROService
Creates an OMERO parameter prototype for the given Java class.
publish(SciJavaEvent) - Method in class net.imagej.AbstractData
 
publish(SciJavaEvent) - Method in class net.imagej.display.AbstractDataView
 
put(String, Object) - Method in class net.imagej.legacy.plugin.IJ1MacroEngine
 
put(String, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(String, boolean) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(String, double) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(String, float) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(String, int) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(String, long) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(Class<?>, String, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(Class<?>, String, boolean) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(Class<?>, String, double) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(Class<?>, String, float) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(Class<?>, String, int) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(Class<?>, String, long) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
put(String, FileObject) - Method in class net.imagej.updater.FilesCollection
 
putList(List<String>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
putList(Class<?>, List<String>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
putList(Class<?>, List<String>) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
putMap(Map<String, String>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
putMap(Class<?>, Map<String, String>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
putMap(Class<?>, Map<String, String>) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
pValue(PValueResult, RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, BinaryFunctionOp<Iterable<T>, Iterable<U>, Double>) - Method in class net.imagej.ops.coloc.ColocNamespace
 
pValue(PValueResult, RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, BinaryFunctionOp<Iterable<T>, Iterable<U>, Double>, int) - Method in class net.imagej.ops.coloc.ColocNamespace
 
pValue(PValueResult, RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, BinaryFunctionOp<Iterable<T>, Iterable<U>, Double>, int, Dimensions) - Method in class net.imagej.ops.coloc.ColocNamespace
 
pValue(PValueResult, RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, BinaryFunctionOp<Iterable<T>, Iterable<U>, Double>, int, Dimensions, long) - Method in class net.imagej.ops.coloc.ColocNamespace
 
PValueResult - Class in net.imagej.ops.coloc.pValue
 
PValueResult() - Constructor for class net.imagej.ops.coloc.pValue.PValueResult
 
pValues - Variable in class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
 

Q

Quadric - Class in net.imagej.ops.stats.regression.leastSquares
An op that fits a quadratic surface (quadric) into a set of points.
Quadric() - Constructor for class net.imagej.ops.stats.regression.leastSquares.Quadric
 
quantile(Iterable<T>, double) - Method in class net.imagej.ops.stats.StatsNamespace
 
quantile(O, Iterable<T>, double) - Method in class net.imagej.ops.stats.StatsNamespace
 
query(String...) - Method in class net.imagej.util.MediaWikiClient
 
queue(String) - Method in class net.imagej.updater.Checksummer
 
queue(String, File) - Method in class net.imagej.updater.Checksummer
 
queueDir(String[], String[]) - Method in class net.imagej.updater.Checksummer
 
queueDir(String, Set<String>) - Method in class net.imagej.updater.Checksummer
 
queueIfExists(String) - Method in class net.imagej.updater.Checksummer
 
quit() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Disposes and prepares for quitting.
quit() - Method in class net.imagej.app.ImageJApp
 
quit() - Method in class net.imagej.legacy.LegacyImageJApp
 
quit() - Method in class net.imagej.patcher.LegacyHooks
Allows interception of ImageJ 1.x's ImageJ.quit() method.
QuitProgram - Class in net.imagej.app
Quits ImageJ.
QuitProgram() - Constructor for class net.imagej.app.QuitProgram
 
quitting() - Method in class net.imagej.legacy.IJ1Helper
 

R

RadialNeigh - Class in net.imagej.plugins.commands.assign.noisereduce
A circular neighborhood of specifiable radius.
RadialNeigh(int, long) - Constructor for class net.imagej.plugins.commands.assign.noisereduce.RadialNeigh
 
RadialNeighborhoodSpecifier - Class in net.imagej.plugins.commands.assign.noisereduce
Plugin for specifying a circular neighborhood.
RadialNeighborhoodSpecifier() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
 
radioButtonIndex - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
radioButtonIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
radioButtons - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
radioButtons - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
rai(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyNamespace
 
rai(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyNamespace
 
rai - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
RAIAndII() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.RAIAndII
 
RAIAndIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryInplace1s.RAIAndIIParallel
 
RAIAndIIToII() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToII
 
RAIAndIIToIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToIIParallel
 
RAIAndIIToRAI() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAI
 
RAIAndIIToRAIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAIParallel
 
RAIAndRAIToII() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToII
 
RAIAndRAIToIIParallel() - Constructor for class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToIIParallel
 
RAIs - Class in net.imagej.ops.special.chain
Utility class for working with RandomAccessibleIntervals.
RAIToHTMLConverter - Class in net.imagej.notebook.image
RAIToHTMLConverter() - Constructor for class net.imagej.notebook.image.RAIToHTMLConverter
 
RAIToII() - Constructor for class net.imagej.ops.map.MapUnaryComputers.RAIToII
 
RAIToIIParallel() - Constructor for class net.imagej.ops.map.MapUnaryComputers.RAIToIIParallel
 
RAIToMaskData - Class in net.imagej.omero.roi.mask
Converts a RandomAccessibleInterval to an OMERO MaskData.
RAIToMaskData() - Constructor for class net.imagej.omero.roi.mask.RAIToMaskData
 
RAIToMaskIntervalConverter - Class in net.imagej.roi
Converts a RandomAccessibleInterval<BoolType> to MaskInterval.
RAIToMaskIntervalConverter() - Constructor for class net.imagej.roi.RAIToMaskIntervalConverter
 
RAIToMeshConverter - Class in net.imagej.ops.geom.geom3d.mesh
Converts a RandomAccessibleInterval to a Mesh
RAIToMeshConverter() - Constructor for class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter
 
RAMP - Static variable in class net.imagej.plugins.commands.io.NewImage
 
randomAccess() - Method in class net.imagej.DefaultDataset
 
randomAccess(Interval) - Method in class net.imagej.DefaultDataset
 
randomAccess() - Method in class net.imagej.ImgPlus
 
randomAccess(Interval) - Method in class net.imagej.ImgPlus
 
randomAccess() - Method in class net.imagej.ops.coloc.ShuffledView
 
randomAccess(Interval) - Method in class net.imagej.ops.coloc.ShuffledView
 
randomAccess(RandomAccessible<T>) - Method in class net.imagej.ops.morphology.thin.Abstract3x3NeighbourhoodThinning
 
randomAccess() - Method in class net.imagej.table.ResultsImg
 
randomAccess(Interval) - Method in class net.imagej.table.ResultsImg
 
RandomAccessibleAsMaskUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RandomAccessibleAsMaskUnwrapper
 
RandomAccessibleIntervalAsMaskIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper
 
randomAccessibleIntervalType() - Static method in class net.imagej.roi.MaskConversionUtil
Gets parameterized Type for RandomAccessibleInterval<BoolType>.
randomAccessibleType() - Static method in class net.imagej.roi.MaskConversionUtil
Gets parameterized Type for RandomAccessible<BoolType>.
randomGaussian(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
randomGaussian(O, I, long) - Method in class net.imagej.ops.math.MathNamespace
 
RandomGaussian() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian
 
randomString(int) - Static method in class net.imagej.server.Utils
Generates a lowercase alphanumeric random String.
randomString(int, String) - Static method in class net.imagej.server.Utils
Generate a random string of length len from the given alphabet.
randomUniform(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
randomUniform(O, I, long) - Method in class net.imagej.ops.math.MathNamespace
 
RandomUniform() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform
 
rangeChanged() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
rasterView(RealRandomAccessible<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Turns a RealRandomAccessible into a RandomAccessible, providing RandomAccess at integer coordinates.
RAToMaskConverter - Class in net.imagej.roi
Converts a RandomAccessible<BoolType> to Mask.
RAToMaskConverter() - Constructor for class net.imagej.roi.RAToMaskConverter
 
rawValue(double) - Method in interface net.imagej.axis.CalibratedAxis
Returns a raw value given a calibrated position along the axis.
rawValue(double) - Method in class net.imagej.axis.ChapmanRichardsAxis
 
rawValue(double) - Method in class net.imagej.axis.DefaultLinearAxis
 
rawValue(double) - Method in class net.imagej.axis.EnumeratedAxis
 
rawValue(double) - Method in class net.imagej.axis.ExponentialAxis
 
rawValue(double) - Method in class net.imagej.axis.ExponentialRecoveryAxis
 
rawValue(double) - Method in class net.imagej.axis.GammaVariateAxis
 
rawValue(double) - Method in class net.imagej.axis.GaussianAxis
 
rawValue(double) - Method in class net.imagej.axis.IdentityAxis
 
rawValue(double) - Method in class net.imagej.axis.InverseRodbardAxis
 
rawValue(double) - Method in class net.imagej.axis.LogLinearAxis
 
rawValue(double) - Method in class net.imagej.axis.PolynomialAxis
 
rawValue(double) - Method in class net.imagej.axis.PowerAxis
 
rawValue(double) - Method in class net.imagej.axis.RodbardAxis
 
read(File, Mesh) - Method in class net.imagej.mesh.io.ply.PLYMeshIO
 
read(Mesh, byte[]) - Method in class net.imagej.mesh.io.stl.STLMeshIO
 
read(Mesh, File) - Method in class net.imagej.mesh.io.stl.STLMeshIO
 
read() - Method in class net.imagej.updater.FilesCollection
 
read(File) - Method in class net.imagej.updater.FilesCollection
 
read(FileInputStream) - Method in class net.imagej.updater.FilesCollection
 
read(InputStream) - Method in class net.imagej.updater.POMParser
 
read(URL) - Method in class net.imagej.updater.util.DropboxURLMapper
 
read() - Method in class net.imagej.updater.util.SkipHashedLines
 
read(byte[]) - Method in class net.imagej.updater.util.SkipHashedLines
 
read(byte[], int, int) - Method in class net.imagej.updater.util.SkipHashedLines
 
read(String) - Method in class net.imagej.updater.XMLFileReader
 
read(InputStream) - Method in class net.imagej.updater.XMLFileReader
 
read(String, InputStream, long) - Method in class net.imagej.updater.XMLFileReader
 
readCachedChecksums() - Method in class net.imagej.updater.Checksummer
 
Reader() - Constructor for class net.imagej.omero.OMEROFormat.Reader
 
readExternal(ObjectInput) - Method in class net.imagej.AbstractData
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.AbstractOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.AngleOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.BinaryMaskOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.CompositeOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.EllipseOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.GeneralPathOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.LineOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.PointOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.PolygonOverlay
 
readExternal(ObjectInput) - Method in class net.imagej.overlay.RectangleOverlay
 
readFile(File) - Static method in class net.imagej.updater.util.UpdaterUtil
 
readNativeVersionFile(String) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
Reading the content of the TensorFlowUtil.TFVERSIONFILE indicating which native version of TensorFlow is installed
readNumber(InputStream) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
readStreamAsBytes(InputStream) - Static method in class net.imagej.updater.util.UpdaterUtil
 
real(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
 
real(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService
Given an ImgPlus of unknown type this returns a typed ImgPlus of type RealType.
real - Variable in class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
RealMaskAsRealRandomAccessibleUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper
 
RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper
 
RealMaskRealIntervalToImageRoiConverter - Class in net.imagej.legacy.convert.roi
Converts a RealMaskRealInterval to an ImageRoi.
RealMaskRealIntervalToImageRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RealMaskRealIntervalToImageRoiConverter
 
RealMaskRealIntervalToMaskData - Class in net.imagej.omero.roi.mask
Converts a RealMaskRealInterval to an OMERO MaskData.
RealMaskRealIntervalToMaskData() - Constructor for class net.imagej.omero.roi.mask.RealMaskRealIntervalToMaskData
 
RealMaskRealIntervalToRRARIConverter - Class in net.imagej.roi
Converts a RealMaskRealInterval to RealRandomAccessibleRealInterval<BoolType>.
RealMaskRealIntervalToRRARIConverter() - Constructor for class net.imagej.roi.RealMaskRealIntervalToRRARIConverter
 
RealMaskToRRAConverter - Class in net.imagej.roi
Converts a RealMask to RealRandomAccessible<BoolType>.
RealMaskToRRAConverter() - Constructor for class net.imagej.roi.RealMaskToRRAConverter
 
realMax(int) - Method in class net.imagej.DefaultDataset
 
realMax(double[]) - Method in class net.imagej.DefaultDataset
 
realMax(RealPositionable) - Method in class net.imagej.DefaultDataset
 
realMax(int) - Method in class net.imagej.display.DefaultImageDisplay
 
realMax(double[]) - Method in class net.imagej.display.DefaultImageDisplay
 
realMax(RealPositionable) - Method in class net.imagej.display.DefaultImageDisplay
 
realMax(int) - Method in class net.imagej.ImgPlus
 
realMax(double[]) - Method in class net.imagej.ImgPlus
 
realMax(RealPositionable) - Method in class net.imagej.ImgPlus
 
realMax(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
 
realMax(double[]) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
 
realMax(RealPositionable) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
 
realMax(int) - Method in class net.imagej.interval.CombinedRealInterval
 
realMax(double[]) - Method in class net.imagej.interval.CombinedRealInterval
 
realMax(RealPositionable) - Method in class net.imagej.interval.CombinedRealInterval
 
realMax(int) - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
 
realMax(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
 
realMax(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
realMax(double[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
realMax(RealPositionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
realMax(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
realMax(int) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
 
realMax(int) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
 
realMax(int) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper
 
realMax(int) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper
 
realMax(int) - Method in class net.imagej.omero.legacy.text.OMEROText
realMax(int) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
realMax(int) - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse
 
realMax(int) - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
 
realMax(int) - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask
 
realMax(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
realMax(int) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
realMax(int) - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskRealInterval
 
realMax(int) - Method in interface net.imagej.omero.roi.rectangle.OMERORectangle
 
realMax(int) - Method in class net.imagej.overlay.AbstractOverlay
 
realMax(double[]) - Method in class net.imagej.overlay.AbstractOverlay
 
realMax(RealPositionable) - Method in class net.imagej.overlay.AbstractOverlay
 
realMax(int) - Method in class net.imagej.table.ResultsImg
 
realMax(double[]) - Method in class net.imagej.table.ResultsImg
 
realMax(RealPositionable) - Method in class net.imagej.table.ResultsImg
 
realMin(int) - Method in class net.imagej.DefaultDataset
 
realMin(double[]) - Method in class net.imagej.DefaultDataset
 
realMin(RealPositionable) - Method in class net.imagej.DefaultDataset
 
realMin(int) - Method in class net.imagej.display.DefaultImageDisplay
 
realMin(double[]) - Method in class net.imagej.display.DefaultImageDisplay
 
realMin(RealPositionable) - Method in class net.imagej.display.DefaultImageDisplay
 
realMin(int) - Method in class net.imagej.ImgPlus
 
realMin(double[]) - Method in class net.imagej.ImgPlus
 
realMin(RealPositionable) - Method in class net.imagej.ImgPlus
 
realMin(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
 
realMin(double[]) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
 
realMin(RealPositionable) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
 
realMin(int) - Method in class net.imagej.interval.CombinedRealInterval
 
realMin(double[]) - Method in class net.imagej.interval.CombinedRealInterval
 
realMin(RealPositionable) - Method in class net.imagej.interval.CombinedRealInterval
 
realMin(int) - Method in class net.imagej.legacy.convert.roi.AbstractPolygonRoiWrapper
 
realMin(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
 
realMin(int) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
realMin(double[]) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
realMin(RealPositionable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
realMin(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
realMin(int) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
 
realMin(int) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
 
realMin(int) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper
 
realMin(int) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper
 
realMin(int) - Method in class net.imagej.omero.legacy.text.OMEROText
realMin(int) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
realMin(int) - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse
 
realMin(int) - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
 
realMin(int) - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask
 
realMin(int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
realMin(int) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
realMin(int) - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMaskRealInterval
 
realMin(int) - Method in interface net.imagej.omero.roi.rectangle.OMERORectangle
 
realMin(int) - Method in class net.imagej.overlay.AbstractOverlay
 
realMin(double[]) - Method in class net.imagej.overlay.AbstractOverlay
 
realMin(RealPositionable) - Method in class net.imagej.overlay.AbstractOverlay
 
realMin(int) - Method in class net.imagej.table.ResultsImg
 
realMin(double[]) - Method in class net.imagej.table.ResultsImg
 
realMin(RealPositionable) - Method in class net.imagej.table.ResultsImg
 
realPointCollection(HashMap<TDoubleArrayList, L>) - Method in interface net.imagej.roi.ROIService
Creates a mutable WritableRealPointCollection containing the given points.
realPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService
Creates a WritableRealPointCollection containing the given points.
RealPointCollectionToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point
Converts a RealPointCollection to a PointRoi.
RealPointCollectionToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.RealPointCollectionToPointRoiConverter
 
RealPointCollectionWrapper - Class in net.imagej.legacy.convert.roi.point
RealPointCollectionWrapper(WritableRealPointCollection<RealLocalizableRealPositionable>) - Constructor for class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper
 
realPointSampleListRealPointCollection(RealPointSampleList<L>) - Method in interface net.imagej.roi.ROIService
Creates a WritableRealPointCollection containing the given points.
realPointSampleListRealPointCollection(Collection<L>) - Method in interface net.imagej.roi.ROIService
Creates a WritableRealPointCollection containing the given points.
RealRandomAccessibleAsRealMaskUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper
 
RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper() - Constructor for class net.imagej.roi.Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper
 
realRandomAccessibleRealIntervalType() - Static method in class net.imagej.roi.MaskConversionUtil
Gets parameterized Type for RealRandomAccessibleRealInterval<BoolType>.
realRandomAccessibleType() - Static method in class net.imagej.roi.MaskConversionUtil
Gets parameterized Type for RealRandomAccessible<BoolType>.
realReport - Static variable in class net.imagej.patcher.PerformanceProfiler
 
RealTransformUnaryCompositeRealMaskRealIntervalToShapeData - Class in net.imagej.omero.roi.transform
RealTransformUnaryCompositeRealMaskRealIntervalToShapeData() - Constructor for class net.imagej.omero.roi.transform.RealTransformUnaryCompositeRealMaskRealIntervalToShapeData
 
RealTypeConverter<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.convert
Base class for ops which convert between RealTypes.
RealTypeConverter() - Constructor for class net.imagej.ops.convert.RealTypeConverter
 
RealTypeMixIn() - Constructor for class net.imagej.server.mixins.Mixins.RealTypeMixIn
 
rebuild() - Method in interface net.imagej.Data
Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.
rebuild() - Method in interface net.imagej.Dataset
Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.
rebuild() - Method in class net.imagej.DefaultDataset
 
rebuild() - Method in interface net.imagej.display.DataView
Recreates the view.
rebuild() - Method in class net.imagej.display.DefaultDatasetView
 
rebuild() - Method in class net.imagej.display.DefaultImageDisplay
 
rebuild() - Method in class net.imagej.display.DefaultOverlayView
 
rebuild() - Method in class net.imagej.overlay.AbstractOverlay
 
rebuild() - Method in interface net.imagej.overlay.Overlay
Informs interested parties that the data object has undergone a major change, such as the dimensional extents changing.
rebuildButton - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
reciprocal(O, I, double) - Method in class net.imagej.ops.math.MathNamespace
 
Reciprocal() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Reciprocal
 
ReciprocalDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by taking reciprocal values of an input Dataset.
ReciprocalDataValues() - Constructor for class net.imagej.plugins.commands.assign.ReciprocalDataValues
 
record(MsEvent) - Method in class net.imagej.plugins.tools.PixelRecorder
This method takes a mouse event and records information internally about the location, color, and type of data referenced at the mouse position.
recordOption(String, String) - Method in class net.imagej.legacy.IJ1Helper
Records an option in ImageJ 1.x's macro recorder, safely.
RectangleJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for rectangle overlays.
RectangleJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
RectangleOverlay - Class in net.imagej.overlay
An axis-aligned rectangle, backed by a RectangleRegionOfInterest.
RectangleOverlay() - Constructor for class net.imagej.overlay.RectangleOverlay
 
RectangleOverlay(Context) - Constructor for class net.imagej.overlay.RectangleOverlay
 
RectangularNeigh - Class in net.imagej.plugins.commands.assign.noisereduce
A rectangular neighborhood of specifiable size.
RectangularNeigh(long[], long[]) - Constructor for class net.imagej.plugins.commands.assign.noisereduce.RectangularNeigh
 
RectangularNeighborhoodSpecifier - Class in net.imagej.plugins.commands.assign.noisereduce
Plugin for specifying a rectangular neighborhood.
RectangularNeighborhoodSpecifier() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
RED - Static variable in class net.imagej.display.ColorTables
 
red - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
red - Variable in class net.imagej.ui.swing.updater.DiffView
 
red(String) - Method in class net.imagej.ui.swing.updater.DiffView
Add some red text.
red(int, String) - Method in class net.imagej.ui.swing.updater.DiffView
Insert some red text.
REDGREEN - Static variable in class net.imagej.display.ColorTables
 
redirected - Static variable in class net.imagej.updater.util.StderrProgress
 
redoLayout() - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
redraw() - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
reduceNoise(String) - Method in class net.imagej.plugins.commands.assign.noisereduce.Reducer
 
Reducer<U extends RealType<U>,V extends RealType<V>> - Class in net.imagej.plugins.commands.assign.noisereduce
Reduces noise in an ImgPlus using a given reduction func across a given neighborhood.
Reducer(Context, ImgPlus<U>, Function<PointSet, V>, PointSet) - Constructor for class net.imagej.plugins.commands.assign.noisereduce.Reducer
 
refreshUpdateSites(List<String>) - Method in class net.imagej.updater.CommandLine
 
regionSize() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo
 
register() - Method in class net.imagej.AbstractData
Informs interested parties that the data object has become relevant and should be registered.
register() - Method in class net.imagej.DefaultDataset
 
register() - Method in class net.imagej.overlay.AbstractOverlay
 
register(Object, String) - Method in class net.imagej.server.services.DefaultObjectService
 
register(Object, String) - Method in interface net.imagej.server.services.ObjectService
Registers an Object if it does not exist yet.
registerDataset(Dataset) - Method in class net.imagej.legacy.LegacyImageMap
This method takes a provided Dataset, converts it to an ImagePlus, stores the new ImagePlus in the Dataset 's properties uner LegacyImageMap.IMP_KEY and finally creates an ImageDisplay using the provided Dataset.
registerDisplay(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap
Ensures that the given ImageDisplay has a corresponding legacy image.
registerDisplay(ImageDisplay, boolean) - Method in class net.imagej.legacy.LegacyImageMap
As LegacyImageMap.registerDisplay(ImageDisplay) but mappings will go in legacy maps if createLegacyMappings is true.
registerImage(Object) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Registers an image (possibly not seen before).
registerImage(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
registerImage(Object) - Method in class net.imagej.patcher.LegacyHooks
Registers an image (possibly not seen before).
registerLegacyImage(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap
Ensures that the given legacy image has a corresponding ImageDisplay.
registerMixIns(ObjectMapper) - Static method in class net.imagej.server.mixins.Mixins
 
registerType(ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer
Remembers the type of an ImagePlus.
releaseDataset() - Method in class net.imagej.plugins.tools.PixelRecorder
 
reloadCollectionAndChecksum(Progress) - Method in class net.imagej.updater.FilesCollection
 
remainder(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
remainder(float, float) - Method in class net.imagej.ops.math.MathNamespace
 
remainder(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
remainder(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
remapColorTables(ImgPlus<?>, ImgPlus<?>) - Method in class net.imagej.plugins.commands.restructure.ColorTableRemapper
 
remapPlanePosition(long[], long[], long[]) - Method in interface net.imagej.plugins.commands.restructure.ColorTableRemapper.RemapAlgorithm
 
remote - Variable in class net.imagej.ui.swing.updater.DiffFile
 
RemoteUpdater - Class in net.imagej.launcher
Runs the ImageJ updater via Javascript from the update site.
RemoteUpdater() - Constructor for class net.imagej.launcher.RemoteUpdater
 
remove(String) - Method in class net.imagej.display.DefaultWindowService
 
remove(String) - Method in interface net.imagej.display.WindowService
Removes a path from the list of window files.
remove(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
remove(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
remove(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
remove(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
remove(Object) - Method in class net.imagej.legacy.convert.TableListWrapper
 
remove(int) - Method in class net.imagej.legacy.convert.TableListWrapper
 
remove(Class<?>, String) - Method in class net.imagej.matlab.ImageJMATLABPrefService
 
remove(Object) - Method in class net.imagej.omero.LazyTableList
 
remove(int) - Method in class net.imagej.omero.LazyTableList
 
remove(int) - Method in class net.imagej.omero.legacy.LazyOverlay
 
remove(Roi) - Method in class net.imagej.omero.legacy.LazyOverlay
 
remove(String) - Method in class net.imagej.omero.legacy.LazyOverlay
 
remove() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
remove(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
 
remove(String) - Method in class net.imagej.server.services.DefaultObjectService
 
remove(String) - Method in interface net.imagej.server.services.ObjectService
Removes an Object with the given ID.
remove - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
Remove - Class in net.imagej.updater.action
The remove action.
Remove(String) - Constructor for class net.imagej.updater.action.Remove
 
remove() - Method in class net.imagej.updater.FilesCollection.FilteredIterator
 
remove(Object) - Method in class net.imagej.updater.FilesCollection
 
removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removeAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper
 
removeAll(Collection<?>) - Method in class net.imagej.omero.LazyTableList
 
removeColumn(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removeColumn(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removeColumns(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removeColumns(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removeConflict(String) - Method in class net.imagej.updater.Checksummer
 
removeDependency(String) - Method in class net.imagej.updater.FileObject
 
removeDuplicateVertices(Mesh, int) - Static method in class net.imagej.mesh.Meshes
Creates a new mesh from a given mesh without any duplicate vertices.
removeFromUpdateSite(String, FilesCollection) - Method in class net.imagej.updater.FileObject
 
removeNativeLibraries(String, Logger) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
Deletes all TensorFlow native library files in TensorFlowUtil.getLibDir(String).
removeObject(String) - Method in class net.imagej.server.resources.ObjectsResource
Removes one object from ObjectService.
removeOverlay(ImageDisplay, Overlay) - Method in class net.imagej.display.DefaultOverlayService
 
removeOverlay(Overlay) - Method in class net.imagej.display.DefaultOverlayService
 
removeOverlay(ImageDisplay, Overlay) - Method in interface net.imagej.display.OverlayService
Removes an Overlay from the given ImageDisplay.
removeOverlay(Overlay) - Method in interface net.imagej.display.OverlayService
Removes an Overlay from all ImageDisplays.
RemoveOverlay - Class in net.imagej.plugins.commands.display
Removes the currently selected overlay from all displays
RemoveOverlay() - Constructor for class net.imagej.plugins.commands.display.RemoveOverlay
 
RemoveOverlayReferences - Class in net.imagej.plugins.commands.display
Removes all selected views.
RemoveOverlayReferences() - Constructor for class net.imagej.plugins.commands.display.RemoveOverlayReferences
 
removePixel(long[], RandomAccessible<BitType>, int) - Method in class net.imagej.ops.morphology.thin.GuoHallThinningStrategy
 
removePixel(long[], RandomAccessible<BitType>, int) - Method in class net.imagej.ops.morphology.thin.HilditchThinningStrategy
 
removePixel(long[], RandomAccessible<BitType>, int) - Method in class net.imagej.ops.morphology.thin.MorphologicalThinningStrategy
 
removePixel(long[], RandomAccessible<BitType>, int) - Method in interface net.imagej.ops.morphology.thin.ThinningStrategy
This method should determine whether to keep a foreground pixel or not.
removePixel(long[], RandomAccessible<BitType>, int) - Method in class net.imagej.ops.morphology.thin.ZhangSuenThinningStrategy
 
removePoint(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
removeProgress(Progress) - Method in class net.imagej.updater.util.AbstractProgressable
 
removeProgress(Progress) - Method in interface net.imagej.updater.util.Progressable
 
removeROIMapping(Object) - Method in class net.imagej.omero.DefaultOMEROService
 
removeROIMapping(Object) - Method in class net.imagej.omero.legacy.LegacyOMEROService
 
removeROIMapping(Object) - Method in interface net.imagej.omero.OMEROService
Removes the Object ROIData mapping associated with the given key from the stored ROIs.
removeRow(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removeRow(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removeRows(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removeRows(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
removes - Variable in class net.imagej.ui.swing.updater.DiffView
 
removeSession(OMEROSession) - Method in class net.imagej.omero.DefaultOMEROService
 
removeSession(OMEROSession) - Method in interface net.imagej.omero.OMEROService
Remove the specified OMEROSession for the cache of stored sessions.
removeToolListener(ToolListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
removeUndoableEditListener(UndoableEditListener) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
 
removeUndoableEditListener(UndoableEditListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
removeUpdateSite(String) - Method in class net.imagej.updater.FilesCollection
 
removeUploadSite(List<String>) - Method in class net.imagej.updater.CommandLine
 
removeUploadSite(String...) - Method in class net.imagej.updater.CommandLine
 
removeVertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
If the wrapped PolygonRoi is not associated with an ImagePlus, then this method will always throw an UnsupportedOperationException.
removeVertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
If the wrapped PolygonRoi is not associated with an ImagePlus, then this method will always throw an UnsupportedOperationException.
removeVertex(int) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
removeWindow(Frame) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
removeWindow(Frame) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
removeWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
removeWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
renameColumn(String, String) - Method in class net.imagej.legacy.convert.TableWrapper
 
renameUpdateSite(String, String) - Method in class net.imagej.updater.FilesCollection
 
rendering() - Method in class net.imagej.ImageJ
Gets this application context's RenderingService.
RenderingService - Interface in net.imagej.render
Interface for service that performs text rendering.
renderText(String) - Method in class net.imagej.render.DummyTextRenderer
 
renderText(String) - Method in interface net.imagej.render.TextRenderer
 
renderText(String) - Method in class net.imagej.ui.awt.AWTTextRenderer
 
RenyiEntropy() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.RenyiEntropy
 
renyiEntropy(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
renyiEntropy(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
renyiEntropy(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
renyiEntropy(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
renyiEntropy(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
renyiEntropy(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
ReorderAxis - Class in net.imagej.plugins.commands.restructure
Rearranges the planes along an axis of a Dataset.
ReorderAxis() - Constructor for class net.imagej.plugins.commands.restructure.ReorderAxis
 
ReorderData - Class in net.imagej.plugins.commands.restructure
Changes the storage order of the pixels of a Dataset.
ReorderData() - Constructor for class net.imagej.plugins.commands.restructure.ReorderData
 
repitition - Variable in class net.imagej.ops.features.zernike.AbstractZernikeFeature
 
replaceDependency(FileObject, String, String) - Method in class net.imagej.updater.Conflicts
 
replaceList(String, String...) - Method in class net.imagej.updater.FileObject
 
replaceOverlay(int, Overlay) - Method in class net.imagej.display.OverlayInfoList
 
replaceOverlayInfo(int, OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
 
replaceUpdateSites(List<UpdateSite>) - Method in class net.imagej.updater.FilesCollection
 
report(long) - Static method in class net.imagej.patcher.MemoryProfiler
 
report(File, int) - Static method in class net.imagej.patcher.PerformanceProfiler
Writes a profile report to a file.
report(PrintStream) - Static method in class net.imagej.patcher.PerformanceProfiler
Writes a report.
report(PrintStream, int) - Static method in class net.imagej.patcher.PerformanceProfiler
Writes a report.
report(RealCoords, RealCoords) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
report(RealCoords, RealCoords) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
report(RealCoords, RealCoords) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
 
report(RealCoords, RealCoords) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
report(RealCoords, RealCoords) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
reportCaller(PrintStream, int) - Static method in class net.imagej.patcher.PerformanceProfiler
Reports a caller.
request(String[], String, String...) - Method in class net.imagej.util.MediaWikiClient
 
requiredAxisTypes() - Method in interface net.imagej.omero.roi.OMERORealMask
 
requiredIntegralImages() - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral
 
requiredIntegralImages() - Method in class net.imagej.ops.threshold.localMean.LocalMeanThresholdIntegral
 
requiredIntegralImages() - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThresholdIntegral
 
requiredIntegralImages() - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThresholdIntegral
 
requiredIntegralImages() - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThresholdIntegral
 
requiresEDT() - Method in class net.imagej.legacy.ui.LegacyUI
 
reReadUpdateSite(String, Progress) - Method in class net.imagej.updater.FilesCollection
 
reset() - Method in class net.imagej.legacy.convert.TableWrapper
 
reset() - Method in class net.imagej.ops.image.integral.IntegralCursor
 
reset() - Method in class net.imagej.plugins.commands.debug.MandelbrotSetImage
 
reset() - Method in class net.imagej.Position
Resets the Position for forward or backward traversal.
reset() - Method in class net.imagej.ui.swing.updater.FileDetails
 
resetColorTables(boolean) - Method in interface net.imagej.display.DatasetView
 
resetColorTables(boolean) - Method in class net.imagej.display.DefaultDatasetView
 
resizeBilinear(Output<T>, Output<U>) - Method in class net.imagej.tensorflow.GraphBuilder
 
resizeBilinear(Output<T>, Output<U>, String) - Method in class net.imagej.tensorflow.GraphBuilder
 
ResizeImage<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib
Resamples an existing image into a Dataset of specified dimensions.
ResizeImage() - Constructor for class net.imagej.plugins.commands.imglib.ResizeImage
 
ResliceImage<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib
Updates dimensions and data values of an image Dataset.
ResliceImage() - Constructor for class net.imagej.plugins.commands.imglib.ResliceImage
 
Resolution(String) - Constructor for class net.imagej.updater.Conflicts.Resolution
 
resolutions - Variable in class net.imagej.updater.Conflicts.Conflict
 
resolve() - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
resolve() - Method in class net.imagej.updater.Conflicts.Resolution
 
ResolveDependencies - Class in net.imagej.ui.swing.updater
This dialog displays the update or upload conflicts for resolution.
ResolveDependencies(UpdaterFrame, FilesCollection) - Constructor for class net.imagej.ui.swing.updater.ResolveDependencies
 
ResolveDependencies(UpdaterFrame, FilesCollection, boolean) - Constructor for class net.imagej.ui.swing.updater.ResolveDependencies
 
restart() - Static method in class net.imagej.launcher.ClassLauncher
 
restoreAttributesTo(Object) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
restoreLocation() - Method in class net.imagej.legacy.ui.LegacyUI
 
restoreTransformTo(Object) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
restoreTransformTo(Object) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
restoreTransformTo(Object) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
RestructureUtils - Class in net.imagej.plugins.commands.restructure
Utility class used by the restructure plugins
ResultsImg - Class in net.imagej.table
Expresses a ResultsTable as an Img.
ResultsImg(ResultsTable) - Constructor for class net.imagej.table.ResultsImg
 
ResultsTable - Interface in net.imagej.table
A table of double-precision floating point values.
ResultsTableColumnWrapper - Class in net.imagej.legacy.convert
Wraps a ResultsTable column as a GenericColumn.
ResultsTableColumnWrapper(ResultsTable, int) - Constructor for class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
ResultsTableHarmonizer - Class in net.imagej.legacy.translate
Harmonizes data between legacy ImageJ and modern ImageJ ResultsTables
ResultsTableHarmonizer(DisplayService) - Constructor for class net.imagej.legacy.translate.ResultsTableHarmonizer
 
ResultsTablePreprocessor - Class in net.imagej.legacy.plugin
Injects the singleton ResultsTable when a single ResultsTable is declared as a parameter.
ResultsTablePreprocessor() - Constructor for class net.imagej.legacy.plugin.ResultsTablePreprocessor
 
ResultsTableToGenericTableConverter - Class in net.imagej.legacy.convert
Converts a ResultsTable to a GenericTable.
ResultsTableToGenericTableConverter() - Constructor for class net.imagej.legacy.convert.ResultsTableToGenericTableConverter
 
ResultsTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ResultsTableToResultsTable
 
ResultsTableUnwrapper - Class in net.imagej.legacy.convert
Converts a ResultsTableWrapper to a ResultsTable via unwrapping.
ResultsTableUnwrapper() - Constructor for class net.imagej.legacy.convert.ResultsTableUnwrapper
 
ResultsTableWrapper - Class in net.imagej.legacy.convert
Wraps a ResultsTable as a GenericTable.
ResultsTableWrapper(ResultsTable) - Constructor for class net.imagej.legacy.convert.ResultsTableWrapper
 
retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
retainAll(Collection<?>) - Method in class net.imagej.legacy.convert.TableListWrapper
 
retainAll(Collection<?>) - Method in class net.imagej.omero.LazyTableList
 
retrieve(Module) - Static method in class net.imagej.legacy.plugin.MacroRecorderExcludedInputs
Obtains the cached set of excluded inputs for a particular module instance, clearing it from the data structure.
retrieveModules() - Method in class net.imagej.server.resources.ModulesResource
 
reverse(Img<T>) - Static method in class net.imagej.tensorflow.Tensors
Flips all dimensions d0,d1,...,dn -> dn,...,d1,d0.
reverse(RandomAccessibleInterval<T>) - Static method in class net.imagej.tensorflow.Tensors
Flips all dimensions d0,d1,...,dn -> dn,...,d1,d0.
revert(Dataset) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#revert instead.
revert(Dataset) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#revert instead.
revertUnrealChanges(List<String>) - Method in class net.imagej.updater.CommandLine
 
ReviewSiteURLsDialog - Class in net.imagej.ui.swing.updater
The dialog in which updated URLs of available update sites will be shown and the user can chose to accept these updates.
ReviewSiteURLsDialog(UpdaterFrame, List<URLChange>) - Constructor for class net.imagej.ui.swing.updater.ReviewSiteURLsDialog
 
RGB332 - Static variable in class net.imagej.display.ColorTables
 
rgbChange() - Method in interface net.imagej.Dataset
TODO
rgbChange() - Method in class net.imagej.DefaultDataset
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, boolean) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>, RandomAccessibleInterval<O>, ArrayList<UnaryInplaceOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, boolean) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<I, I>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<I, I>, UnaryComputerOp<RandomAccessibleInterval<I>, RandomAccessibleInterval<I>>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucy(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>, boolean, boolean, int, UnaryInplaceOp<O, O>, UnaryComputerOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>, RandomAccessibleInterval<O>, ArrayList<UnaryInplaceOp<RandomAccessibleInterval<O>, RandomAccessibleInterval<O>>>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
RichardsonLucyC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.deconvolve
Richardson Lucy algorithm for (@link RandomAccessibleInterval) (Lucy, L.
RichardsonLucyC() - Constructor for class net.imagej.ops.deconvolve.RichardsonLucyC
 
richardsonLucyCorrection(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<O>, RandomAccessibleInterval<C>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
RichardsonLucyCorrection<I extends RealType<I>,O extends RealType<O>,C extends ComplexType<C>> - Class in net.imagej.ops.deconvolve
Computes Richardson Lucy correction factor for (@link RandomAccessibleInterval) (Lucy, L.
RichardsonLucyCorrection() - Constructor for class net.imagej.ops.deconvolve.RichardsonLucyCorrection
 
richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyTV(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, boolean, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyTV(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucyTV(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucyTV(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucyTV(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucyTV(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucyTV(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucyTV(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
richardsonLucyTV(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, long[], OutOfBoundsFactory<I, RandomAccessibleInterval<I>>, OutOfBoundsFactory<K, RandomAccessibleInterval<K>>, O, C, int, boolean, boolean, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
Deprecated.
RichardsonLucyTVUpdate<T extends RealType<T> & NativeType<T>,I extends RandomAccessibleInterval<T>> - Class in net.imagej.ops.deconvolve
Implements update step for Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution Microsc Res Rech 2006 Apr; 69(4)- 260-6 The div_unit_grad function has been adapted from IOCBIOS, Pearu Peterson https://code.google.com/p/iocbio/
RichardsonLucyTVUpdate() - Constructor for class net.imagej.ops.deconvolve.RichardsonLucyTVUpdate
 
richardsonLucyUpdate(RandomAccessibleInterval<O>, RandomAccessibleInterval<O>, float) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyUpdate(RandomAccessibleInterval<O>, RandomAccessibleInterval<O>, float, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
richardsonLucyUpdate(RandomAccessibleInterval<O>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
RichardsonLucyUpdate<T extends RealType<T>> - Class in net.imagej.ops.deconvolve
Implements update step for Richardson-Lucy algorithm on RandomAccessibleInterval.
RichardsonLucyUpdate() - Constructor for class net.imagej.ops.deconvolve.RichardsonLucyUpdate
 
RidgeDetectionMetadata - Class in net.imagej.ops.segment.detectRidges
Helper Method to generate the meta image used for DefaultDetectRidges
RidgeDetectionMetadata(RandomAccessibleInterval<T>, double, double, double) - Constructor for class net.imagej.ops.segment.detectRidges.RidgeDetectionMetadata
Generates the metadata images from the input image
RidgeDetectionUtils - Class in net.imagej.ops.segment.detectRidges
 
RidgeDetectionUtils() - Constructor for class net.imagej.ops.segment.detectRidges.RidgeDetectionUtils
 
rightDiv(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
rightPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
rightShift(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
rightShift(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
rightShift(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
RodbardAxis - Class in net.imagej.axis
RodbardAxis is a CalibratedAxis that scales raw values by the equation y = a + (b-a) / (1 + (x/c)^d).
RodbardAxis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.RodbardAxis
 
ROI_PROPERTY - Static variable in interface net.imagej.roi.ROIService
 
ROIConverters - Class in net.imagej.omero.roi
Utility class for working with ROI converters.
ROIConverters() - Constructor for class net.imagej.omero.roi.ROIConverters
 
ROIDataToOMEROROICollection - Class in net.imagej.omero.roi
Converts an OMERO ROIData to an OMEROROICollection.
ROIDataToOMEROROICollection() - Constructor for class net.imagej.omero.roi.ROIDataToOMEROROICollection
 
RoiManagerPreprocessor - Class in net.imagej.legacy.plugin
Injects the singleton RoiManager when a single RoiManager is declared as a parameter.
RoiManagerPreprocessor() - Constructor for class net.imagej.legacy.plugin.RoiManagerPreprocessor
 
Rois - Class in net.imagej.legacy.convert.roi
Utility class for ROI wrappers and converters.
Rois() - Constructor for class net.imagej.legacy.convert.roi.Rois
 
ROIService - Interface in net.imagej.roi
Service for working with Regions of Interest (ROI).
RoiToBoxConverter - Class in net.imagej.legacy.convert.roi.box
Converts an ImageJ 1.x Roi of type Roi.RECTANGLE with corner diameter = 0 to an ImgLib2 Box.
RoiToBoxConverter() - Constructor for class net.imagej.legacy.convert.roi.box.RoiToBoxConverter
 
RoiToBoxOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.RoiToBoxOMEROConverter
 
RoiToMaskIntervalConverter - Class in net.imagej.legacy.convert.roi
Converts an ImageJ 1.x Roi to an Imglib2 MaskInterval.
RoiToMaskIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter
 
RoiToMaskIntervalOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.RoiToMaskIntervalOMEROConverter
 
ROITree - Interface in net.imagej.roi
A tree of ROIs.
ROITreeToOverlay - Class in net.imagej.omero.legacy.convert
Converts a ROITree containing ROIs to an Overlay containing equivalent ROIs.
ROITreeToOverlay() - Constructor for class net.imagej.omero.legacy.convert.ROITreeToOverlay
 
ROITreeToOverlayConverter - Class in net.imagej.legacy.convert
Converts a ROITree to an Overlay.
ROITreeToOverlayConverter() - Constructor for class net.imagej.legacy.convert.ROITreeToOverlayConverter
 
RoiUnwrappers - Class in net.imagej.legacy.convert.roi
Converters which unwrap wrapped ImageJ 1.x Rois.
RoiUnwrappers.WrapperToEllipseRoiConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped EllipseRois.
RoiUnwrappers.WrapperToLineConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped Lines.
RoiUnwrappers.WrapperToOvalRoiConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped OvalRois.
RoiUnwrappers.WrapperToPointRoiConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped PointRoi.
RoiUnwrappers.WrapperToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped PolygonRoi.
RoiUnwrappers.WrapperToRoiConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped Rois.
RoiUnwrappers.WrapperToRotatedRectRoiConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped RotatedRectRoi.
RoiUnwrappers.WrapperToShapeRoiConverter - Class in net.imagej.legacy.convert.roi
Unwraps wrapped ShapeRois.
RoiWrapper - Class in net.imagej.legacy.convert.roi.box
Wraps an ImageJ 1.x Roi as an ImgLib2 Box.
RoiWrapper(double, double, double, double) - Constructor for class net.imagej.legacy.convert.roi.box.RoiWrapper
Creates an ImageJ 1.x Roi and then wraps it as an ImgLib2 Box.
RoiWrapper(Roi) - Constructor for class net.imagej.legacy.convert.roi.box.RoiWrapper
Wraps an ImageJ 1.x Roi as an ImgLib2 Box.
RoiWrapperToRectangleData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.RoiWrapperToRectangleData
 
rootPanel - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
Rosin() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Rosin
 
rosin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
rosin(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
rosin(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
rosin(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
rosin(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
rosin(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
rotate(Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate(Vector3f, Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate(Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate(Vector3d, Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate(Vector3d, AxisAngle4d) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate(Vector3f, AxisAngle4f) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate(Vector3d, Vector3d, AxisAngle4d) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate(Vector3f, Vector3f, AxisAngle4f) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate1(Vector3d, Quaterniondc) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate1(Vector3f, Quaternionfc) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate1(Vector3d, AxisAngle4d) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
rotate1(Vector3f, AxisAngle4f) - Method in class net.imagej.ops.linalg.LinAlgNamespace
 
Rotate3d - Class in net.imagej.ops.linalg.rotate
Rotates the vector by the quaternion.
Rotate3d() - Constructor for class net.imagej.ops.linalg.rotate.Rotate3d
 
Rotate3f - Class in net.imagej.ops.linalg.rotate
Rotates the vector by the quaternion.
Rotate3f() - Constructor for class net.imagej.ops.linalg.rotate.Rotate3f
 
Rotate90DegreesLeft - Class in net.imagej.plugins.commands.rotate
Modifies an input Dataset by rotating its pixels 90 degrees to the left.
Rotate90DegreesLeft() - Constructor for class net.imagej.plugins.commands.rotate.Rotate90DegreesLeft
 
Rotate90DegreesRight - Class in net.imagej.plugins.commands.rotate
Modifies an input Dataset by rotating its pixels 90 degrees to the right.
Rotate90DegreesRight() - Constructor for class net.imagej.plugins.commands.rotate.Rotate90DegreesRight
 
RotateImageXY<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib
Rotates an existing image by a user specified angle.
RotateImageXY() - Constructor for class net.imagej.plugins.commands.imglib.RotateImageXY
 
rotateView(RandomAccessible<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace
Create view that is rotated by 90 degrees.
rotateView(RandomAccessibleInterval<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace
Create view that is rotated by 90 degrees and preserves interval bounds.
round(double) - Method in class net.imagej.ops.math.MathNamespace
 
round(float) - Method in class net.imagej.ops.math.MathNamespace
 
round(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Round() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Round
 
roundness(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
roundness(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
row2file - Variable in class net.imagej.ui.swing.updater.FileTable
 
rowChanged(int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
rowsChanged() - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
rowsChanged(int, int) - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
rowToFile - Variable in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
RRARIToRealMaskRealIntervalConverter - Class in net.imagej.roi
Converts a RealRandomAccessibleRealInterval<BoolType> to RealMaskRealInterval.
RRARIToRealMaskRealIntervalConverter() - Constructor for class net.imagej.roi.RRARIToRealMaskRealIntervalConverter
 
RRAToRealMaskConverter - Class in net.imagej.roi
Converts a RealRandomAccessible<BoolType> to RealMask.
RRAToRealMaskConverter() - Constructor for class net.imagej.roi.RRAToRealMaskConverter
 
RTs - Class in net.imagej.ops.special.chain
Utility class for working with RealTypes.
run(String, String) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Runs IJ.run(command, options) in the legacy environment.
run() - Method in class net.imagej.animation.Animation
 
run() - Method in class net.imagej.app.AboutImageJ
 
run() - Method in class net.imagej.app.Preferences
 
run() - Method in class net.imagej.app.QuitProgram
 
run() - Method in class net.imagej.command.AbstractPlanarCommand
 
run(RandomAccessibleInterval<?>) - Method in interface net.imagej.command.PlanarCommand
As Runnable.run(), but operating only on the specified plane.
run() - Method in class net.imagej.display.SelectWindow
 
run(String[]) - Static method in class net.imagej.launcher.ClassLauncher
 
run() - Method in class net.imagej.legacy.command.LegacyCommand
 
run(String) - Method in class net.imagej.legacy.IJ1Helper
Evaluates the specified command.
run(Object, Object...) - Method in class net.imagej.legacy.LegacyCodeRunner
 
run(Object, Map<String, Object>) - Method in class net.imagej.legacy.LegacyCodeRunner
 
Run() - Constructor for class net.imagej.legacy.LegacyCommandline.Run
 
run() - Method in class net.imagej.legacy.plugin.GetPath
 
run() - Method in class net.imagej.legacy.plugin.LegacyInitializer
 
run() - Method in class net.imagej.legacy.search.FocusSearchBar
 
run() - Method in class net.imagej.legacy.search.SearchOptions
 
run() - Method in class net.imagej.lut.LUTSelector
 
run() - Method in class net.imagej.omero.commands.OpenFromOMERO
 
run() - Method in class net.imagej.omero.commands.SaveToOMERO
 
run() - Method in class net.imagej.ops.commands.coloc.Colocalize
 
run() - Method in class net.imagej.ops.commands.convert.ConvertImgPlus
 
run() - Method in class net.imagej.ops.commands.convolve.Convolve
 
run() - Method in class net.imagej.ops.commands.filter.FrangiVesselness
 
run() - Method in class net.imagej.ops.commands.morphology.FillHoles
 
run() - Method in class net.imagej.ops.commands.project.ProjectCommand
 
run() - Method in class net.imagej.ops.commands.threshold.GlobalThresholder
 
run() - Method in class net.imagej.ops.geom.geom3d.mesh.BitTypeVertexInterpolator
 
run() - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultVertexInterpolator
 
run() - Method in class net.imagej.ops.help.HelpCandidates
 
run() - Method in class net.imagej.ops.help.HelpForNamespace
 
run() - Method in class net.imagej.ops.help.HelpForOp
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanAnd
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanNot
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanNotEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanOr
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.BooleanXor
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleGreaterThan
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleGreaterThanOrEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleLessThan
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleLessThanOrEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.DoubleNotEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatGreaterThan
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatGreaterThanOrEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatLessThan
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatLessThanOrEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.FloatNotEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerGreaterThan
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerGreaterThanOrEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerLessThan
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerLessThanOrEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.IntegerNotEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongGreaterThan
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongGreaterThanOrEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongLessThan
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongLessThanOrEqual
 
run() - Method in class net.imagej.ops.logic.PrimitiveLogic.LongNotEqual
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleAbs
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleAdd
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleArccos
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleArcsin
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleArctan
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleCeil
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleCos
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleCosh
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleCubeRoot
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleDivide
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleExp
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleFloor
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleLog
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleLog10
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleLogOnePlusX
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleMax
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleMin
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleMultiply
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleNegate
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoublePower
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleRemainder
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleRound
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSignum
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSin
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSinh
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSqrt
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleSubtract
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleTan
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.DoubleTanh
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatAbs
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatAdd
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatDivide
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatMax
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatMin
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatMultiply
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatNegate
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatRemainder
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatRound
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatSignum
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.FloatSubtract
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerAbs
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerAdd
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerAnd
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerComplement
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerDivide
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerLeftShift
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerMax
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerMin
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerMultiply
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerNegate
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerOr
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerRemainder
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerRightShift
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerSubtract
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerUnsignedRightShift
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.IntegerXor
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongAbs
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongAdd
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongAnd
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongComplement
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongDivide
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongLeftShift
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongMax
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongMin
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongMultiply
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongNegate
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongOr
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongRemainder
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongRightShift
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongSubtract
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongUnsignedRightShift
 
run() - Method in class net.imagej.ops.math.PrimitiveMath.LongXor
 
run(String, Object...) - Method in interface net.imagej.ops.OpEnvironment
Executes the given operation with the specified arguments.
run(Class<? extends Op>, Object...) - Method in interface net.imagej.ops.OpEnvironment
Executes the operation of the given type with the specified arguments.
run(Op, Object...) - Method in interface net.imagej.ops.OpEnvironment
Executes the given Op with the specified arguments.
run(Module) - Static method in interface net.imagej.ops.OpEnvironment
 
run(I1, I2, O) - Method in interface net.imagej.ops.special.BinaryOp
Executes the operation in a type-safe but flexible way.
run() - Method in interface net.imagej.ops.special.BinaryOp
 
run(I1, I2, O) - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
 
run() - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
 
run(O) - Method in interface net.imagej.ops.special.computer.NullaryComputerOp
 
run() - Method in interface net.imagej.ops.special.computer.NullaryComputerOp
 
run(I, O) - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
 
run() - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
 
run() - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp
 
run() - Method in class net.imagej.ops.special.function.AbstractNullaryFunctionOp
 
run() - Method in class net.imagej.ops.special.function.AbstractUnaryFunctionOp
 
run(I1, I2, O) - Method in interface net.imagej.ops.special.function.BinaryFunctionOp
 
run(O) - Method in interface net.imagej.ops.special.function.NullaryFunctionOp
 
run(I, O) - Method in interface net.imagej.ops.special.function.UnaryFunctionOp
 
run(I1, I2, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
 
run() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
 
run(I, I, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI
 
run() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI
 
run(I1, I2, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI1
 
run() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCFI1
 
run(I, I, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI
 
run(I1, I2, O) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI1
 
run() - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCI1
 
run(O) - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF
 
run() - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF
 
run(I, O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
 
run() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
 
run(I, O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCFI
 
run(O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCFI
 
run() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCFI
 
run(I, O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI
 
run(O) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI
 
run() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCI
 
run(I1, I2, O) - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op
 
run() - Method in interface net.imagej.ops.special.inplace.BinaryInplace1Op
 
run(I, I, O) - Method in interface net.imagej.ops.special.inplace.BinaryInplaceOp
 
run(I, O) - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp
 
run(O) - Method in interface net.imagej.ops.special.inplace.UnaryInplaceOp
 
run(O) - Method in interface net.imagej.ops.special.NullaryOp
Executes the operation in a type-safe but flexible way.
run() - Method in interface net.imagej.ops.special.NullaryOp
 
run(I, O) - Method in interface net.imagej.ops.special.UnaryOp
Executes the operation in a type-safe but flexible way.
run() - Method in interface net.imagej.ops.special.UnaryOp
 
run() - Method in class net.imagej.ops.thread.chunker.ChunkerInterleaved
 
run() - Method in class net.imagej.ops.thread.chunker.DefaultChunker
 
run() - Method in class net.imagej.options.OptionsOverlay
 
run() - Method in class net.imagej.options.OptionsReset
 
run(String, String) - Method in class net.imagej.patcher.LegacyEnvironment
Runs IJ.run(command, options) in the legacy environment.
run() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
Updates a display's set of animation options.
run() - Method in class net.imagej.plugins.commands.animation.StartAnimation
 
run() - Method in class net.imagej.plugins.commands.animation.StopAllAnimations
 
run() - Method in class net.imagej.plugins.commands.animation.StopAnimation
 
run() - Method in class net.imagej.plugins.commands.app.CopyToSystem
 
run() - Method in class net.imagej.plugins.commands.app.EasterEgg
 
run() - Method in class net.imagej.plugins.commands.app.ImageJWebsite
 
run() - Method in class net.imagej.plugins.commands.app.ListShortcuts
 
run() - Method in class net.imagej.plugins.commands.assign.AbsDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.EquationDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.ExpDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.InplaceUnaryTransform
 
run() - Method in class net.imagej.plugins.commands.assign.InvertDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.LogDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.MathCommand
 
run() - Method in class net.imagej.plugins.commands.assign.NoiseAdder
Runs the operation and returns the Dataset that contains the output data
run() - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
run() - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAdaptiveMedian
 
run() - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
 
run() - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
run() - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.SquareDataValues
 
run() - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues
 
run() - Method in class net.imagej.plugins.commands.axispos.AxisPositionBackward
 
run() - Method in class net.imagej.plugins.commands.axispos.AxisPositionForward
 
run() - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis
 
run() - Method in class net.imagej.plugins.commands.axispos.SetAxisPosition
 
run() - Method in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
 
run() - Method in class net.imagej.plugins.commands.binary.Binarize
 
run() - Method in class net.imagej.plugins.commands.binary.CreateMask
 
run() - Method in class net.imagej.plugins.commands.binary.MakeBinary
 
run() - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Runs the plugin filling the output image with the user specified binary combination of the two input images.
run() - Method in class net.imagej.plugins.commands.correlate.AbstractShadows
 
run() - Method in class net.imagej.plugins.commands.correlate.Correlation3x3Operation
Runs the correlation and replaces pixels in place with correlated values
run() - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo
Runs the plugin.
run() - Method in class net.imagej.plugins.commands.correlate.SharpenDataValues
 
run() - Method in class net.imagej.plugins.commands.correlate.SmoothDataValues
 
run() - Method in class net.imagej.plugins.commands.dataset.LoadDataset
 
run() - Method in class net.imagej.plugins.commands.debug.ButtonDemo
 
run() - Method in class net.imagej.plugins.commands.debug.InspectImg
 
run() - Method in class net.imagej.plugins.commands.debug.MeasurementDemo
 
run() - Method in class net.imagej.plugins.commands.debug.MultidimImage
 
run() - Method in class net.imagej.plugins.commands.debug.PointSetDemo
 
run() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
run() - Method in class net.imagej.plugins.commands.debug.TableDemo
 
run() - Method in class net.imagej.plugins.commands.display.AutoContrast
 
run() - Method in class net.imagej.plugins.commands.display.CaptureImage
 
run() - Method in class net.imagej.plugins.commands.display.CaptureScreen
 
run() - Method in class net.imagej.plugins.commands.display.ChannelsTool
 
run() - Method in class net.imagej.plugins.commands.display.DeselectOverlays
 
run() - Method in class net.imagej.plugins.commands.display.Flatten
 
run() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
run() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
run() - Method in class net.imagej.plugins.commands.display.interactive.DeleteThreshold
 
run() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
run() - Method in class net.imagej.plugins.commands.display.RemoveOverlay
 
run() - Method in class net.imagej.plugins.commands.display.RemoveOverlayReferences
 
run() - Method in class net.imagej.plugins.commands.display.SelectOverlays
 
run() - Method in class net.imagej.plugins.commands.display.SelectView
 
run() - Method in class net.imagej.plugins.commands.display.ShowLUT
 
run() - Method in class net.imagej.plugins.commands.display.ShowLUTAsTable
 
run() - Method in class net.imagej.plugins.commands.display.SpectralComposite
 
run() - Method in class net.imagej.plugins.commands.imglib.Binner
 
run() - Method in class net.imagej.plugins.commands.imglib.CropImage
Runs the crop process on the given display's active dataset.
run() - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
 
run() - Method in class net.imagej.plugins.commands.imglib.DuplicateImageContext
 
run() - Method in class net.imagej.plugins.commands.imglib.GaussianBlur
 
run() - Method in class net.imagej.plugins.commands.imglib.ImgLibDataTransform
 
run() - Method in class net.imagej.plugins.commands.imglib.NanBackground
 
run() - Method in class net.imagej.plugins.commands.imglib.ResizeImage
 
run() - Method in class net.imagej.plugins.commands.imglib.ResliceImage
 
run() - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
 
run() - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
 
run() - Method in class net.imagej.plugins.commands.imglib.TranslateImage
 
run() - Method in class net.imagej.plugins.commands.io.NewImage
 
run() - Method in class net.imagej.plugins.commands.misc.ApplyLookupTable
 
run() - Method in class net.imagej.plugins.commands.misc.ShowInfo
 
run() - Method in class net.imagej.plugins.commands.neigh.FindEdges
Sets the output Dataset to the result of the find edges operation
run() - Method in class net.imagej.plugins.commands.neigh.Neighborhood3x3Operation
 
run() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
run() - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
 
run() - Method in class net.imagej.plugins.commands.overlay.FromOverlayManager
 
run() - Method in class net.imagej.plugins.commands.overlay.OverlayLabels
 
run() - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
run() - Method in class net.imagej.plugins.commands.restructure.AddAxis
Creates new ImgPlus data with an additional axis.
run() - Method in class net.imagej.plugins.commands.restructure.AddData
Creates new ImgPlus data copying pixel values as needed from an input Dataset.
run() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
Creates new ImgPlus data with one less axis.
run() - Method in class net.imagej.plugins.commands.restructure.DeleteData
Creates new ImgPlus data copying pixel values as needed from an input Dataset.
run() - Method in class net.imagej.plugins.commands.restructure.EditAxes
Assigns axis attributes to the axes of the input dataset.
run() - Method in class net.imagej.plugins.commands.restructure.FlipAxis
 
run() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
 
run() - Method in class net.imagej.plugins.commands.restructure.ReorderData
Runs the plugin and reorders data as specified by user.
run() - Method in class net.imagej.plugins.commands.restructure.SplitChannelsContext
 
run() - Method in class net.imagej.plugins.commands.rotate.FlipHorizontally
 
run() - Method in class net.imagej.plugins.commands.rotate.FlipVertically
 
run() - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesLeft
 
run() - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesRight
 
run() - Method in class net.imagej.plugins.commands.typechange.TypeChanger
 
run(File, StatusService, LogService) - Static method in class net.imagej.plugins.commands.upload.SampleImageUploader
This method provides a Java API to upload sample images to the ImageJ2 dropbox.
run() - Method in class net.imagej.plugins.commands.upload.SampleImageUploader
 
run() - Method in class net.imagej.plugins.commands.zoom.Zoom100Percent
 
run() - Method in class net.imagej.plugins.commands.zoom.ZoomIn
 
run() - Method in class net.imagej.plugins.commands.zoom.ZoomOriginalScale
 
run() - Method in class net.imagej.plugins.commands.zoom.ZoomOut
 
run() - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
run() - Method in class net.imagej.plugins.commands.zoom.ZoomToSelection
 
run() - Method in class net.imagej.plugins.tools.FloodFillToolConfig
Configures the connectivity of the FloodFillTool
run() - Method in class net.imagej.plugins.tools.KonamiHandler
 
run() - Method in class net.imagej.plugins.tools.PaintBrushToolConfig
 
run() - Method in class net.imagej.plugins.tools.PencilToolConfig
 
run() - Method in class net.imagej.plugins.tools.SprayCanToolConfig
 
run() - Method in class net.imagej.server.commands.StartServer
 
run() - Method in class net.imagej.server.commands.StopServer
 
run() - Method in class net.imagej.server.external.ScriptEval
 
run() - Method in class net.imagej.server.external.WebClientDemo
 
run(ImageJServerConfiguration, Environment) - Method in class net.imagej.server.ImageJServer
 
run() - Method in class net.imagej.server.utilities.MenuProvider
 
run() - Method in class net.imagej.tensorflow.demo.LabelImage
 
run() - Method in class net.imagej.tensorflow.ui.TensorFlowLibraryManagementCommand
 
run() - Method in class net.imagej.ui.swing.commands.OverlayManager
 
run() - Method in class net.imagej.ui.swing.updater.ImageJUpdater
 
run() - Method in class net.imagej.updater.CheckForUpdates
 
run() - Method in class net.imagej.updater.PromptUserToUpdate
 
run() - Method in class net.imagej.updater.util.InputStream2OutputStream
 
run() - Method in class net.imagej.util.MirrorWebsite
 
runAfterRefreshMenus() - Method in class imagej.patcher.LegacyHooks
Deprecated.
Extension point to run after Help>Refresh Menus
runAfterRefreshMenus() - Method in class net.imagej.legacy.DefaultLegacyHooks
 
runAfterRefreshMenus() - Method in class net.imagej.patcher.LegacyHooks
Extension point to run after Help>Refresh Menus
RunByName - Class in net.imagej.ops.run
Implementation of "run" that invokes the op by name.
RunByName() - Constructor for class net.imagej.ops.run.RunByName
 
RunByOp - Class in net.imagej.ops.run
Implementation of "run" that invokes the specified Op instance.
RunByOp() - Constructor for class net.imagej.ops.run.RunByOp
 
RunByType - Class in net.imagej.ops.run
Implementation of "run" that invokes the op by type.
RunByType() - Constructor for class net.imagej.ops.run.RunByType
 
runLegacyCommand(String, String) - Method in class net.imagej.legacy.LegacyService
Runs a legacy command programmatically.
runLegacyCompatibleCommand(String) - Method in class net.imagej.legacy.LegacyService
Runs the legacy compatible command with the given identifier.
runMacro(String, String) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Runs IJ.runMacro(macro, arg) in the legacy environment.
runMacro(String) - Method in class net.imagej.legacy.IJ1Helper
Evaluates the specified macro.
runMacro(String, String) - Method in class net.imagej.patcher.LegacyEnvironment
Runs IJ.runMacro(macro, arg) in the legacy environment.
runMacroFile(String, String) - Method in class net.imagej.legacy.IJ1Helper
Evaluates the specified macro.
runModule(String, Map<String, Object>, boolean) - Method in class net.imagej.server.resources.ModulesResource
Executes a module with given ID.
RunOpSearchActionFactory - Class in net.imagej.ops.search
Search action for executing an op.
RunOpSearchActionFactory() - Constructor for class net.imagej.ops.search.RunOpSearchActionFactory
 
runPlugIn(String, String) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Runs IJ.runPlugIn(className, arg) in the legacy environment.
runPlugIn(String, String) - Method in class net.imagej.patcher.LegacyEnvironment
Runs IJ.runPlugIn(className, arg) in the legacy environment.
runRemote(Throwable) - Static method in class net.imagej.launcher.RemoteUpdater
Runs the ImageJ updater via the bootstrap.js script, hosted on the main update site.
runtime - Static variable in class net.imagej.patcher.MemoryProfiler
 

S

SaltAndPepper - Class in net.imagej.plugins.commands.imglib
Adds salt and pepper noise to an image.
SaltAndPepper() - Constructor for class net.imagej.plugins.commands.imglib.SaltAndPepper
 
sameIterationOrder(Iterable<?>, Iterable<?>) - Static method in class net.imagej.ops.coloc.ColocUtil
 
sampleAllPlanes(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition
A convenience method for defining a SamplingDefinition that returns a complete copy of an ImageDisplay.
sampleCompositeUVPlane(ImageDisplay, AxisType, AxisType) - Static method in class net.imagej.sampler.SamplingDefinition
A convenience method for defining a SamplingDefinition that returns a composite (multichannel) UV plane of an ImageDisplay.
sampleCompositeXYPlane(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition
A convenience method for defining a SamplingDefinition that returns a composite (multichannel) XY plane of an ImageDisplay.
SampleImageUploader - Class in net.imagej.plugins.commands.upload
Uploads a sample image to the ImageJDev server for further inspection by the developers.
SampleImageUploader() - Constructor for class net.imagej.plugins.commands.upload.SampleImageUploader
 
sampler() - Method in class net.imagej.ImageJ
Gets this application context's SamplerService.
SamplerService - Interface in net.imagej.sampler
Interface for sampler operations which manipulate ImageDisplay data.
sampleUVPlane(ImageDisplay, AxisType, AxisType) - Static method in class net.imagej.sampler.SamplingDefinition
A convenience method for defining a SamplingDefinition that returns a single UV plane of an ImageDisplay.
sampleXYPlane(ImageDisplay) - Static method in class net.imagej.sampler.SamplingDefinition
A convenience method for defining a SamplingDefinition that returns a single XY plane of an ImageDisplay.
SamplingDefinition - Class in net.imagej.sampler
SamplingDefinitions define regions of space and are used by the SamplerService to pull data out of existing ImageDisplays.
save(Dataset, String) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#save instead.
save(Dataset, String, Object) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#save instead.
save(Dataset, String) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#save instead.
save(Dataset, String, Object) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#save instead.
save(Mesh, String) - Method in class net.imagej.mesh.io.ply.PLYMeshIO
 
save(Mesh, String) - Method in class net.imagej.mesh.io.stl.STLMeshIO
 
save() - Method in class net.imagej.options.OptionsChannels
 
save() - Method in class net.imagej.options.OptionsMemoryAndThreads
Saves the instance variable fields to persistent storage.
save(GenericTable, String) - Method in class net.imagej.server.external.DefaultTableIOPlugin
 
saveDialog(String, File, String) - Method in class net.imagej.legacy.IJ1Helper
Uses ImageJ 1.x' SaveDialog
saveInterpreter() - Static method in class net.imagej.legacy.plugin.IJ1MacroEngine
Called by ImageJ 1.x at the beginning of each macro execution.
saveLocation() - Method in class net.imagej.legacy.ui.LegacyUI
 
savePreferences() - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
savePreferences() - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
savePreferences() - Method in class net.imagej.updater.util.UpdaterUserInterface
 
savePreferences() - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
SaveToOMERO - Class in net.imagej.omero.commands
A command to export objects to an OMERO database.
SaveToOMERO() - Constructor for class net.imagej.omero.commands.SaveToOMERO
 
scale() - Method in class net.imagej.axis.DefaultLinearAxis
 
scale() - Method in interface net.imagej.axis.LinearAxis
 
scale(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace
 
scale() - Method in class net.imagej.units.LinearCalibrator
 
ScaleRealTypes<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.convert.scale
Scales input values to their corresponding value in the output type range.
ScaleRealTypes() - Constructor for class net.imagej.ops.convert.scale.ScaleRealTypes
 
scaleView(RandomAccessibleInterval<T>, double[], InterpolatorFactory<T, RandomAccessible<T>>) - Method in class net.imagej.ops.transform.TransformNamespace
Executes the "scale" operation on the given arguments.
scaleView(RandomAccessibleInterval<T>, double[], InterpolatorFactory<T, RandomAccessible<T>>, OutOfBoundsFactory<T, RandomAccessible<T>>) - Method in class net.imagej.ops.transform.TransformNamespace
Executes the "scale" operation on the given arguments while preserving interval bounds.
scifio() - Method in class net.imagej.ImageJ
 
screenCapture() - Method in class net.imagej.ImageJ
Gets this application context's ScreenCaptureService.
ScreenCaptureService - Interface in net.imagej.display
An interface for supporting the capturing of screen data to a Dataset.
ScriptEval - Class in net.imagej.server.external
Command that evaluates arbitrary scripts.
ScriptEval() - Constructor for class net.imagej.server.external.ScriptEval
 
ScriptGenerator - Class in net.imagej.omero
Generates Python stubs for running ImageJ Modules as OMERO scripts.
ScriptGenerator() - Constructor for class net.imagej.omero.ScriptGenerator
 
ScriptGenerator(Context) - Constructor for class net.imagej.omero.ScriptGenerator
 
ScriptRunner - Class in net.imagej.omero
Executes ImageJ Modules as OMERO scripts.
ScriptRunner() - Constructor for class net.imagej.omero.ScriptRunner
 
ScriptRunner(Context) - Constructor for class net.imagej.omero.ScriptRunner
 
scrolledText(int, int, String, DocumentListener, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
scrolledText(int, int, Iterable<String>, DocumentListener, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
scrollpane - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
scrollPane(Component, int, int, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
search(String, boolean) - Method in class net.imagej.ops.search.OpSearcher
 
SearchBarHacker - Class in net.imagej.legacy.search
Hacks the ImageJ search bar into place.
SearchBarHacker(Context) - Constructor for class net.imagej.legacy.search.SearchBarHacker
 
SearchOptions - Class in net.imagej.legacy.search
Options relevant to the ImageJ search bar.
SearchOptions() - Constructor for class net.imagej.legacy.search.SearchOptions
 
searchPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
searchTerm - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
sec(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Sec() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sec
 
sech(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Sech() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sech
 
secondMoment(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
secondMoment(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
secondMoment(IterableRegion) - Method in class net.imagej.ops.geom.GeomNamespace
 
SegmentNamespace - Class in net.imagej.ops.segment
The segment namespace contains segmentation operations.
SegmentNamespace() - Constructor for class net.imagej.ops.segment.SegmentNamespace
 
selectedIndices() - Method in class net.imagej.display.OverlayInfoList
 
SelectedManagerOverlayProperties - Class in net.imagej.plugins.commands.overlay
A plugin to change the properties (e.g., line color, line width) of a set of overlays selected in the Overlay Manager.
SelectedManagerOverlayProperties() - Constructor for class net.imagej.plugins.commands.overlay.SelectedManagerOverlayProperties
 
selectedOverlays() - Method in class net.imagej.display.OverlayInfoList
 
selectEnd() - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
selectionChanged(FigureSelectionEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
Responds to the JHotDraw figure selection event by selecting and deselecting views whose state has changed.
SelectionSpecify - Class in net.imagej.plugins.commands.overlay
Adds a user specified Overlay to an ImageDisplay.
SelectionSpecify() - Constructor for class net.imagej.plugins.commands.overlay.SelectionSpecify
 
selectionTool - Variable in class net.imagej.ui.swing.overlay.ToolDelegator
 
SelectOverlays - Class in net.imagej.plugins.commands.display
Selects all of the overlays linked to the given display.
SelectOverlays() - Constructor for class net.imagej.plugins.commands.display.SelectOverlays
 
SelectView - Class in net.imagej.plugins.commands.display
Selects an overlay that encompasses the current view.
SelectView() - Constructor for class net.imagej.plugins.commands.display.SelectView
 
SelectWindow - Class in net.imagej.display
Activates the chosen display.
SelectWindow() - Constructor for class net.imagej.display.SelectWindow
 
semiAxisLength(int) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
semiAxisLength(int) - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse
 
sendArguments(String[]) - Method in class net.imagej.legacy.SingleInstance
 
ServerArgument - Class in net.imagej.server.console
Handles the --server argument to signal that an ImageJ Server should be started immediately when ImageJ launches.
ServerArgument() - Constructor for class net.imagej.server.console.ServerArgument
 
session(OMEROLocation) - Method in class net.imagej.omero.DefaultOMEROService
 
session() - Method in class net.imagej.omero.DefaultOMEROService
 
session(OMEROLocation) - Method in interface net.imagej.omero.OMEROService
Returns an OMEROSession using the given OMEROLocation.
session() - Method in interface net.imagej.omero.OMEROService
Returns the OMEROSession related to the running thread.
set(String, Double) - Method in class net.imagej.axis.VariableAxis
Sets the specified value to a variable of the given name.
set(int, Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
Sets the value at the given index.
set(int, int, Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
Sets the value at the given row column.
set(String, int, Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
Sets the value at the given row column.
set(int, Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
Returns null, since the previous column needs to be overwritten with the new column.
set(int, ResultsTable) - Method in class net.imagej.legacy.convert.TableListWrapper
 
set(long, double, double, double, double, double, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
set(long, double, double, double) - Method in interface net.imagej.mesh.Vertices
Overwrites the position of a vertex, sets normal and texture coordinates to 0
set(long, double, double, double, double, double, double, double, double) - Method in interface net.imagej.mesh.Vertices
Overwrites a vertex's position, normal and texture coordinates.
set(int, Table<?, ?>) - Method in class net.imagej.omero.LazyTableList
 
set(BigComplex) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to match those of another.
set(long, long) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given long values.
set(double, double) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given double values.
set(BigInteger, BigInteger) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given BigInteger values.
set(BigDecimal, BigDecimal) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given BigDecimal values.
set(String, String) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given String values.
set(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
set(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
set(double) - Method in class net.imagej.types.PreciseFixedFloatType
 
set(long) - Method in class net.imagej.types.PreciseFixedFloatType
 
set(BigInteger) - Method in class net.imagej.types.PreciseFixedFloatType
 
set(BigDecimal) - Method in class net.imagej.types.PreciseFixedFloatType
 
set(long) - Method in class net.imagej.types.UnboundedIntegerType
 
set(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType
 
set(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
set(AttributeKey<T>, T) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
Sets an attribute of the figure.
set(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingColorTableWidget
 
set(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget
 
set(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingHistogramWidget
 
set(UpdaterUserInterface) - Static method in class net.imagej.updater.util.UpdaterUserInterface
 
setA(double) - Method in class net.imagej.axis.Variable1Axis
 
setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.InstallOrUpdate
 
setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.KeepAsIs
 
setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Remove
 
setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Uninstall
 
setAction(FilesCollection, FileObject) - Method in class net.imagej.updater.action.Upload
 
setAction(FilesCollection, FileObject.Action) - Method in class net.imagej.updater.FileObject
 
setAction(FilesCollection, FileObject) - Method in interface net.imagej.updater.GroupAction
 
setActionMap(ActionMap) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
 
setActionMap(ActionMap) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
setActive(boolean) - Static method in class net.imagej.patcher.PerformanceProfiler
Start or stop profiling This method initializes the profiling class loader if necessary.
setActive(boolean) - Method in class net.imagej.updater.UpdateSite
 
setActiveAxis(AxisType) - Method in class net.imagej.display.DefaultImageDisplay
 
setActiveAxis(AxisType) - Method in interface net.imagej.display.ImageDisplay
Sets the axis currently designated as active.
SetActiveAxis - Class in net.imagej.plugins.commands.axispos
Changes the axis to move along to user specified value.
SetActiveAxis() - Constructor for class net.imagej.plugins.commands.axispos.SetActiveAxis
 
setActiveImage(String) - Static method in class net.imagej.legacy.Macros
 
setActiveModule(Module) - Static method in class net.imagej.legacy.Macros
 
setAddToRoiMgr(boolean) - Method in class net.imagej.options.OptionsPointTool
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.AbsDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.EquationDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.ExpDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.InvertDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.LogDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.SquareDataValues
 
setAllPlanes(boolean) - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues
 
setAlpha(int) - Method in class net.imagej.options.OptionsOverlay
 
setAlpha(int) - Method in class net.imagej.overlay.AbstractOverlay
 
setAlpha(int) - Method in interface net.imagej.overlay.Overlay
 
setAlpha(int) - Method in class net.imagej.overlay.OverlaySettings
 
setAlpha(double) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionAlphaTrimmedMean
 
setAlpha(int) - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
 
setAngle(double) - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
Sets the angle of counterclockwise rotation to apply.
setAnimationService(AnimationService) - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
setAntialiasedToolIcons(boolean) - Method in class net.imagej.options.OptionsAppearance
 
setAntialiasing(boolean) - Method in class net.imagej.render.DummyTextRenderer
 
setAntialiasing(boolean) - Method in interface net.imagej.render.TextRenderer
 
setAntialiasing(boolean) - Method in class net.imagej.ui.awt.AWTTextRenderer
 
setApproved(boolean) - Method in class net.imagej.updater.URLChange
 
setArgs(Object[]) - Method in class net.imagej.ops.OpCandidate
 
setArrowColor(ColorRGB) - Method in class net.imagej.options.OptionsArrowTool
 
setArrowDoubleHeaded(boolean) - Method in class net.imagej.options.OptionsArrowTool
 
setArrowOutline(boolean) - Method in class net.imagej.options.OptionsArrowTool
 
setArrowSize(int) - Method in class net.imagej.options.OptionsArrowTool
 
setArrowStyle(String) - Method in class net.imagej.options.OptionsArrowTool
 
setArrowWidth(int) - Method in class net.imagej.options.OptionsArrowTool
 
setAttribute(AttributesImpl, String, long) - Method in class net.imagej.updater.XMLFileWriter
 
setAttribute(AttributesImpl, String, String) - Method in class net.imagej.updater.XMLFileWriter
 
setAttributeEnabled(AttributeKey, boolean) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
setAttributes(Map<AttributeKey, Object>) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
setAutoClose(boolean) - Method in class net.imagej.options.OptionsProfilePlot
 
setAutoMeasure(boolean) - Method in class net.imagej.options.OptionsPointTool
 
setAutoNextSlice(boolean) - Method in class net.imagej.options.OptionsPointTool
 
setAxes(CalibratedAxis[]) - Method in interface net.imagej.Dataset
 
setAxes(CalibratedAxis[]) - Method in class net.imagej.DefaultDataset
 
setAxis(AxisType) - Method in class net.imagej.animation.Animation
 
setAxis(CalibratedAxis, int) - Method in class net.imagej.DefaultDataset
 
setAxis(CalibratedAxis, int) - Method in class net.imagej.display.DefaultImageDisplay
 
setAxis(AxisType) - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
setAxis(AxisType) - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis
 
setAxis(AxisType) - Method in class net.imagej.plugins.commands.restructure.AddAxis
 
setAxis(AxisType) - Method in class net.imagej.plugins.commands.restructure.AddData
 
setAxis(AxisType) - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
 
setAxis(AxisType) - Method in class net.imagej.plugins.commands.restructure.FlipAxis
 
setAxis(int) - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
Sets the axis to be change by referring to its position.
setAxis(A, int) - Method in class net.imagej.space.AbstractAnnotatedSpace
 
setAxis(A, int) - Method in interface net.imagej.space.AnnotatedSpace
Sets the dimensional axis associated with the given dimension.
setAxis(A, int) - Method in class net.imagej.space.CombinedSpace
 
setAxis() - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget
Sets the axis which will be used by this dimension selection dialog.
setAxisName(String) - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
SetAxisPosition - Class in net.imagej.plugins.commands.axispos
Sets the position of the current axis to a user-specified value.
SetAxisPosition() - Constructor for class net.imagej.plugins.commands.axispos.SetAxisPosition
 
setAxisRange(AxisType, String, boolean) - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
Sets the range of values to copy from the input display for the given axis.
setAxisSize(long) - Method in class net.imagej.plugins.commands.restructure.AddAxis
 
setAxisType(int, AxisType) - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
setB(double) - Method in class net.imagej.axis.Variable2Axis
 
setBackAndForth(boolean) - Method in class net.imagej.animation.Animation
 
setBackAndForth(boolean) - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
setBgValues(ChannelCollection) - Method in class net.imagej.options.OptionsChannels
 
setBigInteger(BigInteger) - Method in class net.imagej.types.UnboundedIntegerType
 
setBlackCanvas(boolean) - Method in class net.imagej.options.OptionsAppearance
 
setBoundaryType(TextData, String) - Method in class net.imagej.omero.legacy.text.OMEROTextUnwrapper
 
setBoundaryType(S, String) - Method in class net.imagej.omero.roi.AbstractOMERORealMaskUnwrapper
 
setBoundaryType(EllipseData, String) - Method in class net.imagej.omero.roi.ellipse.OMEROEllipseUnwrapper
 
setBoundaryType(LineData, String) - Method in class net.imagej.omero.roi.line.OMEROLineUnwrapper
 
setBoundaryType(MaskData, String) - Method in class net.imagej.omero.roi.mask.OMEROMaskUnwrapper
 
setBoundaryType(PointData, String) - Method in class net.imagej.omero.roi.point.OMEROPointUnwrapper
 
setBoundaryType(PolygonData, String) - Method in class net.imagej.omero.roi.polyshape.OMEROPolygonUnwrapper
 
setBoundaryType(PolylineData, String) - Method in class net.imagej.omero.roi.polyshape.OMEROPolylineUnwrapper
 
setBoundaryType(RectangleData, String) - Method in class net.imagej.omero.roi.rectangle.OMERORectangleUnwrapper
 
setBounds(Point2D.Double, Point2D.Double) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
setBounds(Point2D.Double, Point2D.Double) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
setBrightness(int) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
setC(double) - Method in class net.imagej.axis.Variable3Axis
 
setCenter(double[]) - Method in class net.imagej.overlay.AngleOverlay
 
setCenter(double, int) - Method in class net.imagej.overlay.AngleOverlay
 
setCentered(boolean) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
setCenterPoint(double, double) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
 
setCenterU(double) - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
setCenterV(double) - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
setChangeInput(boolean) - Method in class net.imagej.plugins.commands.binary.Binarize
Sets whether to change input data to contain the output mask.
setChannelMaximum(int, double) - Method in class net.imagej.DefaultDataset
 
setChannelMaximum(int, double) - Method in interface net.imagej.ImageMetadata
Sets the maximum actual pixel value for the given channel.
setChannelMaximum(int, double) - Method in class net.imagej.ImgPlus
 
setChannelMinimum(int, double) - Method in class net.imagej.DefaultDataset
 
setChannelMinimum(int, double) - Method in interface net.imagej.ImageMetadata
Sets the minimum actual pixel value for the given channel.
setChannelMinimum(int, double) - Method in class net.imagej.ImgPlus
 
setChannelRange(int, double, double) - Method in interface net.imagej.display.DatasetView
Sets the minimum and maximum values of the display range, for the given channel.
setChannelRange(int, double, double) - Method in class net.imagej.display.DefaultDatasetView
 
setChannelRanges(double, double) - Method in interface net.imagej.display.DatasetView
Sets the minimum and maximum values of the display range, globally for all channels.
setChannelRanges(double, double) - Method in class net.imagej.display.DefaultDatasetView
 
setChannels(ChannelCollection) - Method in class net.imagej.DrawingTool
 
setCheckNameDuplicates(boolean) - Method in class net.imagej.legacy.IJ1Helper
Sets WindowManager checkForDuplicateName field.
setChunk(Chunk) - Method in class net.imagej.ops.thread.chunker.AbstractChunker
 
setChunk(Chunk) - Method in interface net.imagej.ops.thread.chunker.ChunkerOp
Sets the Chunk for which will be multithreaded.
setClearAll(boolean) - Method in class net.imagej.app.Preferences
 
setCoeff(int, double) - Method in class net.imagej.axis.PolynomialAxis
Sets the ith coefficient of the polynomial.
setCoefficient(int, int) - Method in class net.imagej.ops.features.zernike.helper.Polynom
set the coefficient at a position.
setColocValue(Double) - Method in class net.imagej.ops.coloc.pValue.PValueResult
 
setColocValuesArray(double[]) - Method in class net.imagej.ops.coloc.pValue.PValueResult
 
setColor(ChannelCollection) - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
setColor(ColorRGB) - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
 
setColorMode(ColorMode) - Method in interface net.imagej.display.DatasetView
 
setColorMode(ColorMode) - Method in class net.imagej.display.DefaultDatasetView
 
setColorMode(ColorMode) - Method in class net.imagej.plugins.commands.display.ChannelsTool
 
setColorTable(ColorTable, int) - Method in class net.imagej.DefaultDataset
 
setColorTable(ColorTable, int) - Method in interface net.imagej.display.DatasetView
 
setColorTable(ColorTable, int) - Method in class net.imagej.display.DefaultDatasetView
 
setColorTable(ColorTable, int) - Method in interface net.imagej.ImageMetadata
Sets the color table at the given position.
setColorTable(ColorTable, int) - Method in class net.imagej.ImgPlus
 
setColorTable(ColorTable) - Method in class net.imagej.ui.swing.SwingColorBar
Sets the ColorTable displayed by this color bar.
setColumnCount(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
setColumnHeader(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
setColumnWidths() - Method in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
setCommand(String) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
setComplexNumber(float, float) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given float values.
setComplexNumber(double, double) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given double values.
setComplexNumber(BigDecimal, BigDecimal) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given BigDecimal values.
setComplexNumber(String, String) - Method in class net.imagej.types.BigComplex
Sets the real and imaginary components of this BigComplex to given String values.
setComplexNumber(float, float) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setComplexNumber(double, double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setComplexNumber(float, float) - Method in class net.imagej.types.PreciseFixedFloatType
 
setComplexNumber(double, double) - Method in class net.imagej.types.PreciseFixedFloatType
 
setComplexNumber(float, float) - Method in class net.imagej.types.UnboundedIntegerType
 
setComplexNumber(double, double) - Method in class net.imagej.types.UnboundedIntegerType
 
setComposite(boolean) - Method in interface net.imagej.display.DatasetView
 
setComposite(boolean) - Method in class net.imagej.display.DefaultDatasetView
 
setCompositeChannelCount(int) - Method in class net.imagej.DefaultDataset
 
setCompositeChannelCount(int) - Method in interface net.imagej.ImageMetadata
Sets the number of channels intended to be displayed together.
setCompositeChannelCount(int) - Method in class net.imagej.ImgPlus
 
setConnectedType(ConnectedType) - Method in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
 
setConnectivity(FloodFillTool.Connectivity) - Method in class net.imagej.plugins.tools.FloodFillTool
Specify whether this flood fill operation should be 4 or 8 connected.
setConstrainXY(Boolean) - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Sets whether command will constrain XY aspect ratio.
setContext(Context) - Method in class net.imagej.AbstractData
 
setContrast(int) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
setCopyColumnHeaders(boolean) - Method in class net.imagej.options.OptionsInputOutput
 
setCopyRowNumbers(boolean) - Method in class net.imagej.options.OptionsInputOutput
 
setCornerDiameter(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
setCount(int, int) - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
setCount(int, int) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
 
setCount(int, int) - Method in class net.imagej.updater.util.AbstractProgressable
 
setCount(int, int) - Method in interface net.imagej.updater.util.Progress
 
setCount(int, int) - Method in class net.imagej.updater.util.StderrProgress
 
setCreationTool(JHotDrawTool) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
setCredentials(OMEROLocation) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setCursor(MouseCursor) - Method in class net.imagej.display.DefaultImageCanvas
 
setCursor(MouseCursor) - Method in interface net.imagej.display.ImageCanvas
Sets the mouse to the given MouseCursor type.
setCursor(Point) - Method in class net.imagej.ui.swing.updater.FileDetails
 
setD(double) - Method in class net.imagej.axis.Variable4Axis
 
setDataMinMax(double, double) - Method in class net.imagej.widget.HistogramBundle
Sets the min/max values of the actual range.
setDataset(Dataset) - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.Binner
Sets the Dataset that the bin operation will be run upon.
setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Sets the Dataset that the resize operation will be run upon.
setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Sets the Dataset that the reslice operation will be run upon.
setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
Sets the Dataset that the rotate operation will be run upon.
setDataset(Dataset) - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Sets the Dataset that the translate operation will be run upon.
setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.AddAxis
 
setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.AddData
 
setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
 
setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.FlipAxis
 
setDataset(Dataset) - Method in class net.imagej.plugins.commands.restructure.ReorderData
 
setDatasetView(DatasetView) - Method in class net.imagej.plugins.commands.display.AutoContrast
 
setDataType(DataType<?>) - Method in class net.imagej.plugins.commands.io.NewImage
 
SetDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output image with a user specified constant value.
SetDataValues() - Constructor for class net.imagej.plugins.commands.assign.SetDataValues
 
setDebugMode(boolean) - Method in class net.imagej.legacy.IJ1Helper
Enables or disables ImageJ 1.x' debug mode.
setDebugMode(boolean) - Method in class net.imagej.options.OptionsMisc
 
setDefault() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
setDefaultBehavior(boolean) - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
Specifies whether to use default behavior or special behavior.
setDefaultDirectory(File) - Method in class net.imagej.legacy.IJ1Helper
Sets OpenDialog's default directory
setDefaultHeadings() - Method in class net.imagej.legacy.convert.TableWrapper
 
setDefaultString(int, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
setDefaultThresholdMethod() - Method in class net.imagej.plugins.commands.binary.Binarize
Sets the threshold method to the default algorithm.
setDelta(int, double) - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Sets the translation delta for a given axis to a given value.
setDescription(String) - Method in class net.imagej.updater.UpdateSite
 
setDest(String, int, SCIFIOConfig) - Method in class net.imagej.omero.OMEROFormat.Writer
 
setDimension(int, long) - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Sets the given dimension of the resized image.
setDimension(AxisType, long) - Method in class net.imagej.plugins.commands.io.NewImage
 
setDimensionality(int) - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
 
setDimensionality(int) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
setDimensions(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
setDirty(boolean) - Method in interface net.imagej.Dataset
TODO
setDirty(boolean) - Method in class net.imagej.DefaultDataset
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.animation.StartAnimation
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.animation.StopAnimation
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.app.CopyToSystem
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.AbsDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.AddNoiseToDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.EquationDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.ExpDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.InvertDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.LogDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.MathCommand
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.ReciprocalDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.SquareDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.assign.SquareRootDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.axispos.AxisPositionBackward
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.axispos.AxisPositionForward
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.axispos.SetActiveAxis
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.correlate.AbstractShadows
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.correlate.ShadowsDemo
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.correlate.SharpenDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.correlate.SmoothDataValues
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.DeselectOverlays
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.Flatten
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.RemoveOverlayReferences
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.SelectOverlays
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.SelectView
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.ShowLUT
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.imglib.CropImage
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.imglib.NanBackground
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.neigh.FindEdges
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
Sets the ImageDisplay to change.
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.rotate.FlipHorizontally
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.rotate.FlipVertically
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesLeft
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.rotate.Rotate90DegreesRight
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.Zoom100Percent
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomIn
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomOriginalScale
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomOut
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
setDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.zoom.ZoomToSelection
 
setDisplayFractionalScales(boolean) - Method in class net.imagej.options.OptionsAppearance
 
setDistanceToFaceInFront(double) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
setDivByZeroVal(String) - Method in class net.imagej.options.OptionsMisc
 
setDotSize(int) - Method in class net.imagej.plugins.tools.SprayCanTool
 
setDouble(T, double) - Method in interface net.imagej.types.DataType
Sets a given value to a given double.
setDouble(ComplexDoubleType, double) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
setDouble(Unsigned12BitType, double) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
setDouble(ShortType, double) - Method in class net.imagej.types.DataType16BitSignedInteger
 
setDouble(UnsignedShortType, double) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
setDouble(BitType, double) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
setDouble(FloatType, double) - Method in class net.imagej.types.DataType32BitSignedFloat
 
setDouble(IntType, double) - Method in class net.imagej.types.DataType32BitSignedInteger
 
setDouble(UnsignedIntType, double) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
setDouble(ComplexFloatType, double) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
setDouble(DoubleType, double) - Method in class net.imagej.types.DataType64BitSignedFloat
 
setDouble(LongType, double) - Method in class net.imagej.types.DataType64BitSignedInteger
 
setDouble(ByteType, double) - Method in class net.imagej.types.DataType8BitSignedInteger
 
setDouble(UnsignedByteType, double) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
setDouble(NativeBoolType, double) - Method in class net.imagej.types.DataTypeBoolean
 
setDouble(BigComplex, double) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
setDouble(PreciseFixedFloatType, double) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
setDouble(UnboundedIntegerType, double) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
setDoubleOutput(boolean) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Sets whether image calculation will create double backed output.
setDrawGridLines(boolean) - Method in class net.imagej.options.OptionsProfilePlot
 
setEasyMode(boolean) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
setEchoChar(char) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
setEchoChar(char) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
setEditableForDevelopers() - Method in class net.imagej.ui.swing.updater.FileDetails
 
setEnabled(boolean) - Static method in class net.imagej.matlab.ImageJMATLABPrefService
Sets whether or not this PrefService is enabled.
setEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.options.OptionsOverlay
 
setEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.OverlaySettings
 
setEndingWavelength(int) - Method in class net.imagej.plugins.commands.display.SpectralComposite
 
setEndPoint1(double, double) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
 
setEndPoint2(double, double) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
 
setEnvironment(OpEnvironment) - Method in class net.imagej.ops.AbstractNamespace
 
setEnvironment(OpEnvironment) - Method in class net.imagej.ops.AbstractOp
 
setEnvironment(OpEnvironment) - Method in interface net.imagej.ops.Environmental
Sets the op execution environment.
setEquation(String) - Method in class net.imagej.plugins.commands.assign.EquationDataValues
 
setExitWhenQuitting(boolean) - Method in class net.imagej.options.OptionsMisc
 
setExtent(double, int) - Method in class net.imagej.overlay.RectangleOverlay
 
setf(long, float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
setf(long, float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
setf(long, float, float, float, float, float, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
setf(long, float, float, float, float, float, float, float, float) - Method in interface net.imagej.mesh.Vertices
Overwrites a vertex's position, normal and texture coordinates.
setf(long, float, float, float) - Method in interface net.imagej.mesh.Vertices
Overwrites the position of a vertex, sets normal and texture coordinates to 0
setFactor(int, int) - Method in class net.imagej.plugins.commands.imglib.Binner
Sets the reduction factor for a given dimension.
setFFTInput(RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.AbstractFFTFilterC
 
setFFTKernel(RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.AbstractFFTFilterC
 
setFFTSizeOp(UnaryFunctionOp<Dimensions, long[][]>) - Method in class net.imagej.ops.filter.pad.PadInputFFT
 
setFFTSizeOp(UnaryFunctionOp<Dimensions, long[][]>) - Method in class net.imagej.ops.filter.pad.PadShiftKernel
 
setFgValues(ChannelCollection) - Method in class net.imagej.options.OptionsChannels
 
setFiles(Iterable<FileObject>) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
setFiles(FilesCollection) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
setFiles(Iterable<FileObject>) - Method in class net.imagej.ui.swing.updater.FileTable
 
setFillColor(Color) - Method in class net.imagej.omero.legacy.LazyOverlay
 
setFillColor(ColorRGB) - Method in class net.imagej.options.OptionsOverlay
 
setFillColor(ColorRGB) - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
setFillColor(ColorRGB) - Method in class net.imagej.overlay.AbstractOverlay
 
setFillColor(ColorRGB) - Method in interface net.imagej.overlay.Overlay
 
setFillColor(ColorRGB) - Method in class net.imagej.overlay.OverlaySettings
 
setFillColor(ColorRGB) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
setFillMaskBackground(boolean) - Method in class net.imagej.plugins.commands.binary.Binarize
Sets whether to fill background pixels of binary mask or not to the given specified value.
setFillMaskForeground(boolean) - Method in class net.imagej.plugins.commands.binary.Binarize
Sets whether to fill foreground pixels of binary mask or not to the given specified value.
setFillOpacity(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
setFillType(String) - Method in class net.imagej.plugins.commands.io.NewImage
 
setFirst(long) - Method in class net.imagej.animation.Animation
 
setFirst(UnaryComputerOp<A, B>) - Method in class net.imagej.ops.join.DefaultJoin2Computers
 
setFirst(UnaryInplaceOp<A, A>) - Method in class net.imagej.ops.join.DefaultJoin2Inplaces
 
setFirst(UnaryComputerOp<A, B>) - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace
 
setFirst(UnaryInplaceOp<A, A>) - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer
 
setFirst(OP1) - Method in interface net.imagej.ops.join.Join2Ops
 
setFirst(long) - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
setFirstValidAction(FilesCollection, FileObject.Action...) - Method in class net.imagej.updater.FileObject
 
setFont(String) - Method in class net.imagej.options.OptionsFont
 
setFontFamily(TextRenderer.FontFamily) - Method in class net.imagej.DrawingTool
Sets the family name of the drawing font.
setFontFamily(TextRenderer.FontFamily) - Method in class net.imagej.render.DummyTextRenderer
 
setFontFamily(TextRenderer.FontFamily) - Method in interface net.imagej.render.TextRenderer
 
setFontFamily(TextRenderer.FontFamily) - Method in class net.imagej.ui.awt.AWTTextRenderer
 
setFontSize(int) - Method in class net.imagej.DrawingTool
Sets the size of the drawing font.
setFontSize(int) - Method in class net.imagej.options.OptionsFont
 
setFontSize(int) - Method in class net.imagej.render.DummyTextRenderer
 
setFontSize(int) - Method in interface net.imagej.render.TextRenderer
 
setFontSize(int) - Method in class net.imagej.ui.awt.AWTTextRenderer
 
setFontSmooth(boolean) - Method in class net.imagej.options.OptionsFont
 
setFontStyle(TextRenderer.FontStyle) - Method in class net.imagej.DrawingTool
Sets the style of the drawing font.
setFontStyle(String) - Method in class net.imagej.options.OptionsFont
 
setFontStyle(TextRenderer.FontStyle) - Method in class net.imagej.render.DummyTextRenderer
 
setFontStyle(TextRenderer.FontStyle) - Method in interface net.imagej.render.TextRenderer
 
setFontStyle(TextRenderer.FontStyle) - Method in class net.imagej.ui.awt.AWTTextRenderer
 
setForceOverwrite(boolean) - Method in class net.imagej.omero.ScriptGenerator
Toggles whether to force overwrite any existing ImageJ scripts.
setFPS(double) - Method in class net.imagej.animation.Animation
 
setFPS(double) - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
setFullZoomImages(boolean) - Method in class net.imagej.options.OptionsAppearance
 
setGeneralPath(GeneralPath) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
setGenerateDebugInfo(boolean) - Method in class net.imagej.options.OptionsCompiler
 
setHalfTrimWidth(int) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionTrimmedMean
 
setHasChanges(boolean) - Method in class net.imagej.widget.HistogramBundle
Sets the changes flag.
setHeader(String) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
setHeading(int, String) - Method in class net.imagej.legacy.convert.TableWrapper
 
setHeadlessOnly(boolean) - Method in class net.imagej.omero.ScriptGenerator
Toggles whether to generate only headless-friendly modules.
setHeight(int) - Method in class net.imagej.options.OptionsProfilePlot
 
setHeight(long) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
setHelpLabel(String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
setHelpLabel(String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
setHideProcessStackDialog(boolean) - Method in class net.imagej.options.OptionsMisc
 
setHistogram(int, Histogram1d<?>) - Method in class net.imagej.widget.HistogramBundle
Sets the histogram of interest for this HistogramBundle.
setHost(String) - Method in class net.imagej.updater.UpdateSite
 
setIJ1Helper(IJ1Helper) - Method in class net.imagej.legacy.LegacyService
This is not part of the public API.
setImag(long) - Method in class net.imagej.types.BigComplex
Sets the imaginary component of this BigComplex to given long value.
setImag(double) - Method in class net.imagej.types.BigComplex
Sets the imaginary component of this BigComplex to given double value.
setImag(BigInteger) - Method in class net.imagej.types.BigComplex
Sets the imaginary component of this BigComplex to given BigInteger value.
setImag(BigDecimal) - Method in class net.imagej.types.BigComplex
Sets the imaginary component of this BigComplex to given BigDecimal value.
setImag(String) - Method in class net.imagej.types.BigComplex
Sets the imaginary component of this BigComplex to given String value.
setImag(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setImag(BigDecimal) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setImag(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setImage(Image) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.CaptureImage
 
setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.interactive.OrthogonalViews
 
setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.interactive.SynchronizeWindows
 
setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.display.RemoveOverlay
 
setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.misc.Benchmark
 
setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.overlay.AddImage
 
setImageDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.overlay.FromOverlayManager
 
setImageDisplayService(ImageDisplayService) - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
setImageID(long) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setImaginary(float) - Method in class net.imagej.types.BigComplex
Sets the imaginary component of this BigComplex to given float value.
setImaginary(double) - Method in class net.imagej.types.BigComplex
Sets the imaginary component of this BigComplex to given double value.
setImaginary(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setImaginary(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setImaginary(float) - Method in class net.imagej.types.PreciseFixedFloatType
 
setImaginary(double) - Method in class net.imagej.types.PreciseFixedFloatType
 
setImaginary(float) - Method in class net.imagej.types.UnboundedIntegerType
 
setImaginary(double) - Method in class net.imagej.types.UnboundedIntegerType
 
setImgPlus(ImgPlus<? extends RealType<?>>) - Method in interface net.imagej.Dataset
TODO
setImgPlus(ImgPlus<? extends RealType<?>>) - Method in class net.imagej.DefaultDataset
 
setIndex(long) - Method in class net.imagej.Position
Sets the Position from a given long index.
setInitialScale(double) - Method in class net.imagej.display.DefaultImageCanvas
 
setInitialScale(double) - Method in interface net.imagej.display.Zoomable
Sets the scale to use when reverting after zooming.
setInput(I1) - Method in interface net.imagej.ops.special.BinaryInput
 
setInput(I) - Method in class net.imagej.ops.special.computer.AbstractUnaryComputerOp
 
setInput(I) - Method in class net.imagej.ops.special.function.AbstractUnaryFunctionOp
 
setInput(I) - Method in class net.imagej.ops.special.hybrid.AbstractUnaryHybridC
 
setInput(A) - Method in class net.imagej.ops.special.inplace.AbstractUnaryInplaceOp
 
setInput(I) - Method in interface net.imagej.ops.special.UnaryInput
 
setInput(Dataset) - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
setInput(ImageDisplay) - Method in class net.imagej.plugins.commands.overlay.ConvertToMask
 
setInput1(I1) - Method in interface net.imagej.ops.special.BinaryInput
 
setInput1(I1) - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp
 
setInput1(I1) - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp
 
setInput1(I1) - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
 
setInput1(A) - Method in class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op
 
setInput1(Dataset) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Sets the Dataset that will be input 1 for this image calculation.
setInput2(I2) - Method in interface net.imagej.ops.special.BinaryInput
 
setInput2(I2) - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp
 
setInput2(I2) - Method in class net.imagej.ops.special.function.AbstractBinaryFunctionOp
 
setInput2(I2) - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
 
setInput2(I) - Method in class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op
 
setInput2(Dataset) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Sets the Dataset that will be input 2 for this image calculation.
setInputData(Dataset) - Method in class net.imagej.plugins.commands.binary.Binarize
Sets the reference input data.
setInputDisplay(ImageDisplay) - Method in class net.imagej.plugins.commands.imglib.DuplicateImage
Sets the the input image to be sampled.
setInputMap(InputMap) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
 
setInputMap(InputMap) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
setInputMask(Dataset) - Method in class net.imagej.plugins.commands.binary.Binarize
Sets the preexisting mask (if any).
setInsets(int, int, int) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
setInsets(int, int, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
setInteger(int) - Method in class net.imagej.types.UnboundedIntegerType
 
setInteger(long) - Method in class net.imagej.types.UnboundedIntegerType
 
setInterpLineProf(boolean) - Method in class net.imagej.options.OptionsProfilePlot
 
setInterpolationMethod(String) - Method in class net.imagej.plugins.commands.imglib.ResizeImage
Sets the interpolation method used to combine pixels.
setInterpolationMethod(String) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Sets the interpolation method used to combine pixels.
setInterpolationMethod(String) - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
Sets the interpolation method used to combine pixels.
setInterpolationMethod(String) - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Sets the interpolation method used to combine pixels.
setInterpZoomedImages(boolean) - Method in class net.imagej.options.OptionsAppearance
 
setInvertModeLegacy() - Method in class net.imagej.options.OptionsCompatibility
 
setInvertModeModern() - Method in class net.imagej.options.OptionsCompatibility
 
setIsoLevel(double) - Method in class net.imagej.ops.geom.geom3d.mesh.BitTypeVertexInterpolator
 
setIsoLevel(double) - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultVertexInterpolator
 
setIsoLevel(double) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator
 
setItemCount(int, int) - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
setItemCount(int, int) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
 
setItemCount(int, int) - Method in class net.imagej.updater.util.AbstractProgressable
 
setItemCount(int, int) - Method in interface net.imagej.updater.util.Progress
 
setItemCount(int, int) - Method in class net.imagej.updater.util.StderrProgress
 
setJpegQuality(int) - Method in class net.imagej.options.OptionsInputOutput
 
setJustification(TextOverlay.Justification) - Method in class net.imagej.overlay.TextOverlay
 
setJvmArgs(String) - Method in class net.imagej.config.ConfigFileParameters
Sets the value associated with the "jvmargs" key in the launcher configuration file.
setKeepURL(boolean) - Method in class net.imagej.updater.UpdateSite
 
setKeyDown(int) - Method in class net.imagej.legacy.IJ1Helper
 
setKeyUp(int) - Method in class net.imagej.legacy.IJ1Helper
 
setLabel(String, int) - Method in class net.imagej.legacy.convert.TableWrapper
 
setLabel(String) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
setLabelPoints(boolean) - Method in class net.imagej.options.OptionsPointTool
 
setLast(long) - Method in class net.imagej.animation.Animation
 
setLast(long) - Method in class net.imagej.plugins.commands.animation.AnimationOptions
 
setLastBgColor(ColorRGB) - Method in class net.imagej.options.OptionsChannels
 
setLastBgColor(ColorRGB, boolean) - Method in class net.imagej.options.OptionsChannels
 
setLastFgColor(ColorRGB) - Method in class net.imagej.options.OptionsChannels
 
setLastFgColor(ColorRGB, boolean) - Method in class net.imagej.options.OptionsChannels
 
setLastModified(long) - Method in class net.imagej.updater.UpdateSite
 
setLatestNag() - Static method in class net.imagej.updater.UpToDate
Remember that we just nagged the user about an update.
setLatestNag(long) - Static method in class net.imagej.updater.UpToDate
Remember when we last nagged the user about an update.
setLegacyImageJResultsTable() - Method in class net.imagej.legacy.translate.ResultsTableHarmonizer
 
setLineColor(ColorRGB) - Method in class net.imagej.options.OptionsOverlay
 
setLineColor(ColorRGB) - Method in class net.imagej.overlay.AbstractOverlay
 
setLineColor(ColorRGB) - Method in interface net.imagej.overlay.Overlay
Set the color of the outline line of the overlay, if appropriate
setLineColor(ColorRGB) - Method in class net.imagej.overlay.OverlaySettings
 
setLineColor(ColorRGB) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
setLineEnd(double[]) - Method in class net.imagej.overlay.LineOverlay
 
setLineEnd(double, int) - Method in class net.imagej.overlay.LineOverlay
 
setLineEndArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.AbstractOverlay
 
setLineEndArrowStyle(Overlay.ArrowStyle) - Method in interface net.imagej.overlay.Overlay
 
setLineSlopeIntercept(double, double) - Method in class net.imagej.widget.HistogramBundle
Sets the line equation for the slope line of a histogram.
setLineStart(double[]) - Method in class net.imagej.overlay.LineOverlay
 
setLineStart(double, int) - Method in class net.imagej.overlay.LineOverlay
 
setLineStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.AbstractOverlay
 
setLineStartArrowStyle(Overlay.ArrowStyle) - Method in interface net.imagej.overlay.Overlay
 
setLineStyle(Overlay.LineStyle) - Method in class net.imagej.options.OptionsOverlay
 
setLineStyle(Overlay.LineStyle) - Method in class net.imagej.overlay.AbstractOverlay
 
setLineStyle(Overlay.LineStyle) - Method in interface net.imagej.overlay.Overlay
Set the style of the outline line of the overlay, if appropriate
setLineStyle(Overlay.LineStyle) - Method in class net.imagej.overlay.OverlaySettings
 
setLineWidth(long) - Method in class net.imagej.DrawingTool
Sets the current drawing line width.
setLineWidth(int) - Method in class net.imagej.options.OptionsLineWidth
 
setLineWidth(double) - Method in class net.imagej.options.OptionsOverlay
 
setLineWidth(double) - Method in class net.imagej.overlay.AbstractOverlay
 
setLineWidth(double) - Method in interface net.imagej.overlay.Overlay
Set the width of the outline line of the overlay, if appropriate
setLineWidth(double) - Method in class net.imagej.overlay.OverlaySettings
 
setLineWidth(long) - Method in class net.imagej.plugins.tools.AbstractLineTool
Sets the drawing width for lines (in pixels).
setListValues(boolean) - Method in class net.imagej.options.OptionsProfilePlot
 
setLocalVersion(String, String, long) - Method in class net.imagej.updater.FileObject
 
setLocation(int, int) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
setLocation(int, int) - Method in class net.imagej.legacy.IJ1Helper
 
setLocation(int, int) - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
 
setLocation(int, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
setLong(T, long) - Method in interface net.imagej.types.DataType
Sets a given value to a given long.
setLong(ComplexDoubleType, long) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
setLong(Unsigned12BitType, long) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
setLong(ShortType, long) - Method in class net.imagej.types.DataType16BitSignedInteger
 
setLong(UnsignedShortType, long) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
setLong(BitType, long) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
setLong(FloatType, long) - Method in class net.imagej.types.DataType32BitSignedFloat
 
setLong(IntType, long) - Method in class net.imagej.types.DataType32BitSignedInteger
 
setLong(UnsignedIntType, long) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
setLong(ComplexFloatType, long) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
setLong(DoubleType, long) - Method in class net.imagej.types.DataType64BitSignedFloat
 
setLong(LongType, long) - Method in class net.imagej.types.DataType64BitSignedInteger
 
setLong(ByteType, long) - Method in class net.imagej.types.DataType8BitSignedInteger
 
setLong(UnsignedByteType, long) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
setLong(NativeBoolType, long) - Method in class net.imagej.types.DataTypeBoolean
 
setLong(BigComplex, long) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
setLong(PreciseFixedFloatType, long) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
setLong(UnboundedIntegerType, long) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
setLoopCount(int) - Method in class net.imagej.ops.loop.DefaultLoopComputer
 
setLoopCount(int) - Method in class net.imagej.ops.loop.DefaultLoopInplace
 
setLoopCount(int) - Method in interface net.imagej.ops.loop.LoopOp
 
setM(int) - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
Set repitition m
setMacroOptions(String) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Sets the macro options.
setMacroOptions(String) - Method in class net.imagej.patcher.LegacyEnvironment
Sets the macro options.
setMaintainer(String) - Method in class net.imagej.updater.UpdateSite
 
setMarkWidth(int) - Method in class net.imagej.options.OptionsPointTool
 
setMaskColor(String) - Method in class net.imagej.plugins.commands.binary.Binarize
Sets the color of the mask pixels.
setMaskPixels(String) - Method in class net.imagej.plugins.commands.binary.Binarize
Sets which pixels are considered part of the mask.
setMaxBin(long) - Method in class net.imagej.widget.HistogramBundle
Sets the bin number of the maximum value.
setMaximum(double) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
setMaxMemory(int) - Method in class net.imagej.options.OptionsMemoryAndThreads
Sets the number of megabytes of memory that should be allocated for use by ImageJ.
setMaxThreads(int) - Method in class net.imagej.ops.CustomOpEnvironment
 
setMaxThreads(int) - Method in class net.imagej.ops.DefaultOpService
 
setMaxThreads(int) - Method in interface net.imagej.ops.OpEnvironment
Sets the maximum number of threads any single op is allowed to use.
setMaxY(double) - Method in class net.imagej.options.OptionsProfilePlot
 
setMemoryInMB(int) - Method in class net.imagej.config.ConfigFileParameters
Sets the value of the number of megabytes of ram to allocate.
setMenuFontSize(int) - Method in class net.imagej.options.OptionsAppearance
 
setMinBin(long) - Method in class net.imagej.widget.HistogramBundle
Sets the bin number of the minimum value.
setMinimum(double) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
setMinY(double) - Method in class net.imagej.options.OptionsProfilePlot
 
setMode(String) - Method in class net.imagej.options.OptionsWandTool
 
setModernImageJResultsTable() - Method in class net.imagej.legacy.translate.ResultsTableHarmonizer
 
setModule(Module) - Method in class net.imagej.ops.OpCandidate
Sets the module instance associated with the attempted match.
setMoveIsolatedPlugins(boolean) - Method in class net.imagej.options.OptionsMisc
 
setMultipleBuffers(boolean) - Method in class net.imagej.options.OptionsMemoryAndThreads
Sets whether ImageJ will maintain multiple undo buffers.
setN(int) - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
Set order n
setName(String) - Method in class net.imagej.AbstractData
 
setName(String) - Method in class net.imagej.DefaultDataset
 
setName(String) - Method in class net.imagej.ImgPlus
 
setName(String) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setName(String) - Method in interface net.imagej.ops.Namespace
 
setName(String) - Method in class net.imagej.plugins.commands.io.NewImage
 
setName(String) - Method in class net.imagej.updater.UpdateSite
 
setNamespace(String) - Method in class net.imagej.omero.ScriptGenerator
 
setNegativeX(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
setNegativeY(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
setNeighborhood(Neighborhood) - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
setNeighborhoodType(AbstractNoiseReducerPlugin.NeighborhoodType) - Method in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
setNewAxisIndex(int, int) - Method in class net.imagej.plugins.commands.restructure.ReorderData
Sets newAxes[index] from existingAxes[fromPosition]
setNewWindow(boolean) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Sets whether image calculation will create a new image window.
setNoAction() - Method in class net.imagej.updater.FileObject
 
setNoImageBorder(boolean) - Method in class net.imagej.options.OptionsAppearance
 
setNormal(long, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
setNormal(long, double, double, double) - Method in interface net.imagej.mesh.Vertices
Overwrites a vertex's normal.
setNormalf(long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
setNormalf(long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
setNormalf(long, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
setNormalf(long, float, float, float) - Method in interface net.imagej.mesh.Vertices
Overwrites a vertex's normal.
setNoSaveXValues(boolean) - Method in class net.imagej.options.OptionsProfilePlot
 
setNumberOfElements(int) - Method in class net.imagej.ops.thread.chunker.AbstractChunker
 
setNumberOfElements(int) - Method in interface net.imagej.ops.thread.chunker.ChunkerOp
Sets the total number of elements which should be processed in parallel.
setNumThreads() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
setNumThreads(int) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
setNumThreads() - Method in interface net.imagej.minmax.MinMaxMethod
Sets number of threads to default
setNumThreads(int) - Method in interface net.imagej.minmax.MinMaxMethod
Sets number of threads to use
setObf(OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.filter.pad.PadInputFFT
 
setOBFInput(OutOfBoundsFactory<I, RandomAccessibleInterval<I>>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
 
setOBFKernel(OutOfBoundsFactory<K, RandomAccessibleInterval<K>>) - Method in class net.imagej.ops.filter.AbstractPadAndFFTFilter
 
setOfficial(boolean) - Method in class net.imagej.updater.UpdateSite
Sets the flag indicating whether the site is listed on the canonical list of update sites.
setOffset(double) - Method in class net.imagej.units.LinearCalibrator
 
setOKLabel(String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
setOKLabel(String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
setOne() - Method in class net.imagej.types.BigComplex
Sets this BigComplex to the unity value.
setOne() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setOne() - Method in class net.imagej.types.PreciseFixedFloatType
 
setOne() - Method in class net.imagej.types.UnboundedIntegerType
 
setOp(UnaryComputerOp<I, I>) - Method in class net.imagej.ops.loop.DefaultLoopComputer
 
setOp(UnaryInplaceOp<A, A>) - Method in class net.imagej.ops.loop.DefaultLoopInplace
 
setOp(OP) - Method in interface net.imagej.ops.loop.LoopOp
 
setOp(BinaryComputerOp<EI1, EI2, EO>) - Method in class net.imagej.ops.map.AbstractMapBinaryComputer
 
setOp(BinaryInplaceOp<EI, EO>) - Method in class net.imagej.ops.map.AbstractMapBinaryInplace
 
setOp(BinaryInplace1Op<EI1, EI2, EO>) - Method in class net.imagej.ops.map.AbstractMapBinaryInplace1
 
setOp(UnaryComputerOp<EI, EO>) - Method in class net.imagej.ops.map.AbstractMapComputer
 
setOp(UnaryInplaceOp<EI, EO>) - Method in class net.imagej.ops.map.AbstractMapInplace
 
setOp(NullaryComputerOp<EO>) - Method in class net.imagej.ops.map.AbstractMapNullaryComputer
 
setOp(UnaryComputerOp<EI, EO>) - Method in class net.imagej.ops.map.AbstractMapView
 
setOp(OP) - Method in interface net.imagej.ops.map.MapOp
 
setOp(OP) - Method in class net.imagej.ops.map.neighborhood.AbstractMapNeighborhood
 
setOpenAs32bitFloat(boolean) - Method in class net.imagej.options.OptionsDicom
 
setOperation(CalculatorOp<U, V>) - Method in class net.imagej.plugins.commands.calculator.ImageCalculator
Sets the CalculatorOp to be used in the image calculation.
setOps(List<? extends UnaryComputerOp<A, A>>) - Method in class net.imagej.ops.join.DefaultJoinNComputers
 
setOps(List<? extends UnaryInplaceOp<A, A>>) - Method in class net.imagej.ops.join.DefaultJoinNInplaces
 
setOps(List<? extends OP>) - Method in interface net.imagej.ops.join.JoinNOps
Sets the Ops which are joined in this op.
setOptions(String) - Method in class net.imagej.legacy.IJ1Helper
Delegates to ImageJ 1.x' Macro.setOptions(String) function.
setOrder(int) - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
 
setOrder(double) - Method in class net.imagej.plugins.commands.assign.noisereduce.NoiseReductionContraharmonicMean
 
setOrder(String) - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
Sets the order of planes along an axis.
setOrigin(double) - Method in class net.imagej.axis.DefaultLinearAxis
 
setOrigin(double) - Method in interface net.imagej.axis.LinearAxis
 
setOrigin(double, int) - Method in class net.imagej.overlay.EllipseOverlay
 
setOrigin(double, int) - Method in class net.imagej.overlay.RectangleOverlay
 
setOriginalData(Object[]) - Method in class net.imagej.omero.OMERORefColumn
 
setOriginMax(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Sets the origin point of the reslicing for the user specified axis to the largest value of the axis.
setOriginMin(int) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Sets the origin point of the reslicing for the user specified axis to the smallest value of the axis.
setOutput(String, String) - Static method in class net.imagej.legacy.plugin.IJ1MacroEngine
Deprecated.
Macros no longer call this method. Nor should you.
setOutput(O) - Method in class net.imagej.ops.special.computer.AbstractBinaryComputerOp
 
setOutput(O) - Method in class net.imagej.ops.special.computer.AbstractNullaryComputerOp
 
setOutput(O) - Method in class net.imagej.ops.special.computer.AbstractUnaryComputerOp
 
setOutput(O) - Method in class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
 
setOutput(O) - Method in class net.imagej.ops.special.hybrid.AbstractNullaryHybridCF
 
setOutput(O) - Method in class net.imagej.ops.special.hybrid.AbstractUnaryHybridC
 
setOutput(O) - Method in interface net.imagej.ops.special.OutputMutable
 
setOutputFactory(UnaryOutputFactory<A, B>) - Method in interface net.imagej.ops.join.BufferFactory
Sets the UnaryOutputFactory which is used to create intermediate results.
setOutputFactory(UnaryOutputFactory<A, B>) - Method in class net.imagej.ops.join.DefaultJoin2Computers
 
setOutputFactory(UnaryOutputFactory<A, A>) - Method in class net.imagej.ops.join.DefaultJoinNComputers
 
setOutputFactory(UnaryOutputFactory<I, I>) - Method in class net.imagej.ops.loop.DefaultLoopComputer
 
setOutputFactory(UnaryOutputFactory<I, I>) - Method in interface net.imagej.ops.loop.LoopComputer
 
setOval(boolean) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
setOverlay(Overlay) - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
setOverlays(List<Overlay>, Overlay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer
Deprecated.
Assigns a list of Overlays to the given ImagePlus.
setOverlays(List<Overlay>) - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
setP(Polynom) - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
Set radial polynom p
setPanCenter(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
setPanCenter(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
setPanCenter(RealCoords) - Method in interface net.imagej.display.Pannable
Pans to the given absolute (X, Y) position in data coordinate space.
setPanCenter(IntCoords) - Method in interface net.imagej.display.Pannable
Pans to the given absolute (X, Y) position in panel coordinate space.
setParent(TreeNode<?>) - Method in class net.imagej.omero.roi.DefaultOMEROROICollection
 
setParent(TreeNode<?>) - Method in class net.imagej.omero.roi.DefaultOMEROROIElement
 
setParent(TreeNode<?>) - Method in class net.imagej.omero.roi.LazyROITree
 
setParent(TreeNode<?>) - Method in interface net.imagej.roi.ROITree
 
setPepperValue(double) - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
 
setPhysicalSizeX(Length) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setPhysicalSizeY(Length) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setPhysicalSizeZ(Length) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setPixels(Pixels) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setPixelsID(long) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setPixelType(String) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setPlanar(boolean) - Method in class net.imagej.command.AbstractPlanarCommand
 
setPlanar(boolean) - Method in interface net.imagej.command.PlanarCommand
 
setPlane(int, Object) - Method in interface net.imagej.Dataset
sets a plane of data within the dataset.
setPlane(int, Object) - Method in class net.imagej.DefaultDataset
 
setPlaneSilently(int, Object) - Method in interface net.imagej.Dataset
sets a plane of data within the dataset.
setPlaneSilently(int, Object) - Method in class net.imagej.DefaultDataset
 
setPoint(int, double[]) - Method in class net.imagej.overlay.PointOverlay
 
setPoint1(int[]) - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
setPoint1(int[]) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator
 
setPoint1(double[]) - Method in class net.imagej.overlay.AngleOverlay
 
setPoint1(double, int) - Method in class net.imagej.overlay.AngleOverlay
 
setPoint2(int[]) - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
setPoint2(int[]) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator
 
setPoint2(double[]) - Method in class net.imagej.overlay.AngleOverlay
 
setPoint2(double, int) - Method in class net.imagej.overlay.AngleOverlay
 
setPoints(List<Point2D.Double>) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolygon
 
setPoints(List<Point2D.Double>) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyline
 
setPoints(List<Point2D.Double>) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
setPoints(List<double[]>) - Method in class net.imagej.overlay.PointOverlay
 
setPoints(List<double[]>) - Method in class net.imagej.ui.swing.overlay.PointFigure
 
setPointX(long) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
setPointY(long) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
setPort(int) - Method in class net.imagej.options.OptionsProxy
 
setPosition(long, AxisType) - Method in class net.imagej.display.AbstractDataView
 
setPosition(Localizable) - Method in class net.imagej.display.AbstractDataView
 
setPosition(int[]) - Method in class net.imagej.display.AbstractDataView
 
setPosition(long[]) - Method in class net.imagej.display.AbstractDataView
 
setPosition(int, int) - Method in class net.imagej.display.AbstractDataView
 
setPosition(long, int) - Method in class net.imagej.display.AbstractDataView
 
setPosition(long, AxisType) - Method in class net.imagej.display.DefaultDatasetView
 
setPosition(long, AxisType) - Method in class net.imagej.display.DefaultImageDisplay
 
setPosition(Localizable) - Method in class net.imagej.display.DefaultImageDisplay
 
setPosition(int[]) - Method in class net.imagej.display.DefaultImageDisplay
 
setPosition(long[]) - Method in class net.imagej.display.DefaultImageDisplay
 
setPosition(int, int) - Method in class net.imagej.display.DefaultImageDisplay
 
setPosition(long, int) - Method in class net.imagej.display.DefaultImageDisplay
 
setPosition(long[]) - Method in class net.imagej.DrawingTool
Sets this DrawingHelper's current drawing position.
setPosition(long, double, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
setPosition(long, double, double, double) - Method in interface net.imagej.mesh.Vertices
Overwrites a vertex's position.
setPosition(RealLocalizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(float[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(double[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(float, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(double, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(Localizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(int[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(long[]) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(int, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(long, int) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
setPosition(Position) - Method in class net.imagej.plugins.commands.assign.FillDataValues
 
setPosition(long) - Method in class net.imagej.plugins.commands.restructure.AddData
 
setPosition(long) - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
 
setPosition(long) - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
setPosition(long, int) - Method in class net.imagej.Position
Sets the value of the Position for a given dimension.
setPosition(long[]) - Method in class net.imagej.Position
Sets the values of the Position for all dimensions.
setPosition(int[]) - Method in class net.imagej.Position
Sets the values of the Position for all dimensions.
setPosition(int, int) - Method in class net.imagej.Position
Sets the value of the Position for a given dimension.
setPosition(Localizable) - Method in class net.imagej.Position
Sets the values of the Position for all dimensions.
setPosition(long, AxisType) - Method in interface net.imagej.PositionableByAxis
Sets the position of the element for one dimension.
setPositionf(long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
setPositionf(long, float, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
setPositionf(long, float, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
setPositionf(long, float, float, float) - Method in interface net.imagej.mesh.Vertices
Overwrites a vertex's position.
setPositiveX(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
setPositiveY(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RectangularNeighborhoodSpecifier
 
setPref(String, String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
setPref(String, String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
setPref(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
setPref(String, String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
setPreferredChannel(long) - Method in class net.imagej.DrawingTool
Set the preferred channel to draw on.
setPreferredSize(Dimension) - Method in class net.imagej.ui.swing.SwingColorBar
 
setPreferredSize(int, int) - Method in class net.imagej.widget.HistogramBundle
Sets the preferred size for the rendering of this histogram as a widget.
setPreview(boolean) - Method in class net.imagej.plugins.commands.assign.MathCommand
 
setProcessingEvents(boolean) - Method in class net.imagej.legacy.LegacyService
This is not part of the public API.
setProgress(int, int) - Method in class net.imagej.legacy.IJ1Helper
 
setProgress(int, int) - Method in class net.imagej.legacy.ui.LegacyStatusBar
 
setProxyServer(String) - Method in class net.imagej.options.OptionsProxy
 
setPValue(Double) - Method in class net.imagej.ops.coloc.pValue.PValueResult
 
setQuantity(long) - Method in class net.imagej.plugins.commands.restructure.AddData
 
setQuantity(long) - Method in class net.imagej.plugins.commands.restructure.DeleteData
 
setRadius(double, int) - Method in class net.imagej.overlay.EllipseOverlay
 
setRadius(long) - Method in class net.imagej.plugins.commands.assign.noisereduce.RadialNeighborhoodSpecifier
 
setRate(int) - Method in class net.imagej.plugins.tools.SprayCanTool
 
setReal(long) - Method in class net.imagej.types.BigComplex
Sets the real component of this BigComplex to given long value.
setReal(float) - Method in class net.imagej.types.BigComplex
Sets the real component of this BigComplex to given float value.
setReal(double) - Method in class net.imagej.types.BigComplex
Sets the real component of this BigComplex to given double value.
setReal(BigInteger) - Method in class net.imagej.types.BigComplex
Sets the real component of this BigComplex to given BigInteger value.
setReal(BigDecimal) - Method in class net.imagej.types.BigComplex
Sets the real component of this BigComplex to given BigDecimal value.
setReal(String) - Method in class net.imagej.types.BigComplex
Sets the real component of this BigComplex to given String value.
setReal(double) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setReal(BigDecimal) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setReal(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setReal(float) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setReal(float) - Method in class net.imagej.types.PreciseFixedFloatType
 
setReal(double) - Method in class net.imagej.types.PreciseFixedFloatType
 
setReal(float) - Method in class net.imagej.types.UnboundedIntegerType
 
setReal(double) - Method in class net.imagej.types.UnboundedIntegerType
 
setRegionOfInterest(R) - Method in class net.imagej.overlay.AbstractROIOverlay
 
setRegionOfInterest(GeneralPathRegionOfInterest) - Method in class net.imagej.overlay.GeneralPathOverlay
 
setRepetition(int) - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
 
setRequireCommandKey(boolean) - Method in class net.imagej.options.OptionsMisc
 
setRGBMerged(boolean) - Method in interface net.imagej.Dataset
For use in legacy layer only, this flag allows the various legacy layer image translators to support color images correctly.
setRGBMerged(boolean) - Method in class net.imagej.DefaultDataset
 
setRois(ROITree) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setRotateXZ(boolean) - Method in class net.imagej.options.OptionsDicom
 
setRotateYZ(boolean) - Method in class net.imagej.options.OptionsDicom
 
setRowCount(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
setRowHeader(int, String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
setRunGcOnClick(boolean) - Method in class net.imagej.options.OptionsMemoryAndThreads
Sets whether ImageJ will run the garbage collector when user clicks on the status area.
setRunSingleInstanceListener(boolean) - Method in class net.imagej.options.OptionsMisc
 
setSaltValue(double) - Method in class net.imagej.plugins.commands.imglib.SaltAndPepper
 
setSaveColumnHeaders(boolean) - Method in class net.imagej.options.OptionsInputOutput
 
setSaveOrderIntel(boolean) - Method in class net.imagej.options.OptionsInputOutput
 
setSaveRowNumbers(boolean) - Method in class net.imagej.options.OptionsInputOutput
 
setScale(double) - Method in class net.imagej.axis.DefaultLinearAxis
 
setScale(double) - Method in interface net.imagej.axis.LinearAxis
 
setScale(double) - Method in class net.imagej.units.LinearCalibrator
 
setScaleWhenConverting(boolean) - Method in class net.imagej.options.OptionsConversions
 
setSecond(UnaryComputerOp<B, C>) - Method in class net.imagej.ops.join.DefaultJoin2Computers
 
setSecond(UnaryInplaceOp<A, A>) - Method in class net.imagej.ops.join.DefaultJoin2Inplaces
 
setSecond(UnaryInplaceOp<B, B>) - Method in class net.imagej.ops.join.DefaultJoinComputerAndInplace
 
setSecond(UnaryComputerOp<A, B>) - Method in class net.imagej.ops.join.DefaultJoinInplaceAndComputer
 
setSecond(OP2) - Method in interface net.imagej.ops.join.Join2Ops
 
setSeed(long) - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
 
setSeed(long) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian
 
setSeed(long) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform
 
setSelected(boolean) - Method in class net.imagej.display.AbstractDataView
 
setSelected(boolean) - Method in interface net.imagej.display.DataView
Set the view's selection state.
setSelected(boolean) - Method in class net.imagej.display.OverlayInfo
 
setSelection(boolean) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
setSelectionColor(ColorRGB) - Method in class net.imagej.options.OptionsAppearance
 
setSemiAxisLength(int, double) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
This will always throw an UnsupportedOperationException.
setSemiAxisLength(int, double) - Method in interface net.imagej.omero.roi.ellipse.OMEROEllipse
 
setSideLength(int, double) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
This will always throw an UnsupportedOperationException.
setSideLength(int, double) - Method in interface net.imagej.omero.roi.rectangle.OMERORectangle
 
setSize(int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
setSizeC(int) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setSizeT(int) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setSizeX(int) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setSizeY(int) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setSizeZ(int) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setSmartRecording(boolean) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
setSmartRecording(boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
setSource(String) - Method in class net.imagej.DefaultDataset
 
setSource(String) - Method in class net.imagej.ImgPlus
 
setSource(String) - Method in interface net.imagej.Sourced
Sets the source String
setSpacing(int, double) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Sets the reslice spacing for a given axis to a given value.
setStackThreads(int) - Method in class net.imagej.options.OptionsMemoryAndThreads
Sets the number of stack threads that should be allocated for use by ImageJ.
setStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.options.OptionsOverlay
 
setStartArrowStyle(Overlay.ArrowStyle) - Method in class net.imagej.overlay.OverlaySettings
 
setStartingWavelength(int) - Method in class net.imagej.plugins.commands.display.SpectralComposite
 
setStatus(String) - Method in class net.imagej.legacy.IJ1Helper
 
setStatus(String) - Method in class net.imagej.legacy.ui.LegacyStatusBar
 
setStatus(OpCandidate.StatusCode) - Method in class net.imagej.ops.OpCandidate
Sets the status of the matching attempt.
setStatus(OpCandidate.StatusCode, String) - Method in class net.imagej.ops.OpCandidate
Sets the status of the matching attempt.
setStatus(OpCandidate.StatusCode, String, ModuleItem<?>) - Method in class net.imagej.ops.OpCandidate
Sets the status of the matching.
setStatus(FileObject.Status) - Method in class net.imagej.updater.FileObject
 
setStdDev(double) - Method in class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
setStdDev(double) - Method in class net.imagej.plugins.commands.assign.NoiseAdder
Specify the standard deviation of the gaussian range desired.
setStrokeColor(Color) - Method in class net.imagej.omero.legacy.LazyOverlay
 
setStrokeColor(ColorRGB) - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
setStrokeWidth(int) - Method in class net.imagej.options.OptionsRoundedRectangleTool
 
setStyle(Component, int, int) - Method in class net.imagej.ui.swing.updater.FileTable
 
setTableFileExtension(String) - Method in class net.imagej.options.OptionsInputOutput
 
setTables(List<Table<?, ?>>) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setTailProportions(double, double) - Method in class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
Sets the fractional proportions of the distribution.
setTargetJavaVersion(String) - Method in class net.imagej.options.OptionsCompiler
 
setText(W) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate
 
setText(OMEROMaskWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask
 
setText(EllipsoidWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse
 
setText(LineWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine
 
setText(PointMaskWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint
 
setText(Polygon2DWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon
 
setText(PolylineWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline
 
setText(BoxWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle
 
setText(OMEROTextWrapper) - Method in class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText
 
setText(String) - Method in class net.imagej.omero.legacy.text.OMEROText
 
setText(String) - Method in class net.imagej.overlay.TextOverlay
 
setTextAntialiasing(boolean) - Method in class net.imagej.DrawingTool
Turns antialiasing of drawn text on (true) or off (false)
setTextRenderer(TextRenderer) - Method in class net.imagej.DrawingTool
 
setTexture(long, double, double) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
setTexture(long, double, double) - Method in interface net.imagej.mesh.Vertices
Overwrites a vertex's texture coordinates.
setTexturef(long, float, float) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
setTexturef(long, float, float) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
setTexturef(long, float, float) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
setTexturef(long, float, float) - Method in interface net.imagej.mesh.Vertices
Overwrites a vertex's texture coordinates.
setTheoreticalMinMax(double, double) - Method in class net.imagej.widget.HistogramBundle
Sets the min/max values of the desired range.
setThresholdEachPlane(boolean) - Method in class net.imagej.plugins.commands.binary.Binarize
Set whether to threshold each plane separately or to threshold the whole image at once.
setThresholdMethod(ThresholdMethod) - Method in class net.imagej.plugins.commands.binary.Binarize
Sets the threshold method to use for pixel discrimination.
setTimeIncrement(Time) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setTimestamp(long) - Method in class net.imagej.updater.UpdateSite
 
setTitle(String) - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
setTitle() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
setTitle(String) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
 
setTitle(String) - Method in class net.imagej.updater.util.AbstractProgressable
 
setTitle(String) - Method in interface net.imagej.updater.util.Progress
 
setTitle(String) - Method in class net.imagej.updater.util.StderrProgress
 
setTolerance(double) - Method in class net.imagej.options.OptionsWandTool
 
setToStart(Cursor<?>, long) - Static method in class net.imagej.ops.thread.chunker.CursorBasedChunk
 
setTransparentIndex(int) - Method in class net.imagej.options.OptionsInputOutput
 
setType(AxisType) - Method in class net.imagej.axis.DefaultTypedAxis
 
setType(AxisType) - Method in interface net.imagej.axis.TypedAxis
Sets the type of the axis.
setType(EO) - Method in class net.imagej.ops.map.AbstractMapView
 
setType(EO) - Method in interface net.imagej.ops.map.MapView
 
setUAxis(int) - Method in class net.imagej.DrawingTool
Sets the U axis index this DrawingTool will work in.
setUnit(String) - Method in class net.imagej.axis.AbstractCalibratedAxis
 
setUnit(String) - Method in interface net.imagej.axis.CalibratedAxis
Sets the dimension's unit.
setUnit(String) - Method in class net.imagej.plugins.commands.imglib.RotateImageXY
Sets the current angle unit setting (radians or dgrees).
setUnit(int, String) - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
setup() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
setup() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
setup() - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher
Called once before the neighborhood iterations take place to allow implementer to initialize state.
setUpdateablePlatforms(String...) - Method in class net.imagej.updater.util.UpdaterUtil
 
setUpdateDefaults(boolean) - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
setUpdateSitesChanged(boolean) - Method in class net.imagej.updater.FilesCollection
 
setUploadDirectory(String) - Method in class net.imagej.updater.UpdateSite
 
setURL(String) - Method in class net.imagej.updater.UpdateSite
 
setUseInvertingLUT(boolean) - Method in class net.imagej.options.OptionsAppearance
 
setUseJFileChooser(boolean) - Method in class net.imagej.options.OptionsInputOutput
 
setUsePtrCursor(boolean) - Method in class net.imagej.options.OptionsMisc
 
setUserInterface() - Static method in class net.imagej.updater.CommandLine
 
setUseSystemProxy(boolean) - Method in class net.imagej.options.OptionsProxy
 
setUseUserUnits(boolean) - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Sets whether reslice spacing field values are in user units or pixel units.
setUseUserUnits(boolean) - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Sets whether input deltas field values are in user units or pixel units.
setValidBits(int) - Method in class net.imagej.DefaultDataset
 
setValidBits(int) - Method in interface net.imagej.ImageMetadata
Sets the number of valid bits.
setValidBits(int) - Method in class net.imagej.ImgPlus
 
setValue(int, int, double) - Method in class net.imagej.legacy.convert.TableWrapper
 
setValue(int, int, String) - Method in class net.imagej.legacy.convert.TableWrapper
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.AddToDataValues
 
setValue(long) - Method in class net.imagej.plugins.commands.assign.AndDataValuesWith
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.DivideDataValuesBy
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.GammaDataValues
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.MaxDataValues
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.MinDataValues
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.MultiplyDataValuesBy
 
setValue(long) - Method in class net.imagej.plugins.commands.assign.OrDataValuesWith
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.PowerDataValues
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.SetDataValues
 
setValue(double) - Method in class net.imagej.plugins.commands.assign.SubtractFromDataValues
 
setValue(long) - Method in class net.imagej.plugins.commands.assign.XorDataValuesWith
 
setValue1(double) - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
setValue1(double) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator
 
setValue2(double) - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
setValue2(double) - Method in interface net.imagej.ops.geom.geom3d.mesh.VertexInterpolator
 
setValueAt(Object, int, int) - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
setValueMethod(String) - Method in class net.imagej.plugins.commands.imglib.Binner
Sets the value method used to combine pixels.
setValues(double[]) - Method in class net.imagej.axis.EnumeratedAxis
Sets the axis's calibrated values.
setVar(int, String, double) - Method in class net.imagej.plugins.commands.restructure.EditAxes
 
setVAxis(int) - Method in class net.imagej.DrawingTool
Sets the V axis index this DrawingTool will work in.
setVertexInFront(Vertex, double) - Method in class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
Adds a vertex to the points in front of this facet.
setVertProfile(boolean) - Method in class net.imagej.options.OptionsProfilePlot
 
setView(DatasetView) - Method in class net.imagej.command.AbstractPlanarCommand
 
setView(DatasetView) - Method in interface net.imagej.command.PlanarCommand
 
setView(DatasetView) - Method in class net.imagej.plugins.commands.display.ChannelsTool
 
setView(DatasetView) - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
setView(DatasetView) - Method in class net.imagej.plugins.commands.display.SpectralComposite
 
setViewOption(ViewOptions.Option) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
setViewportSize(int, int) - Method in class net.imagej.display.DefaultImageCanvas
 
setViewportSize(int, int) - Method in interface net.imagej.display.ImageCanvas
Sets the dimensions of the viewport in panel coordinates.
setVisible(boolean) - Method in class net.imagej.legacy.IJ1Helper
 
setVisible(boolean) - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
 
setVisible(boolean) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
setVisible(boolean) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
setWaveIncrement(RInt) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setWaveStart(RInt) - Method in class net.imagej.omero.OMEROFormat.Metadata
 
setWeightedRgbConversions(boolean) - Method in class net.imagej.options.OptionsConversions
 
setWidth(int) - Method in class net.imagej.options.OptionsProfilePlot
 
setWidth(long) - Method in class net.imagej.plugins.commands.overlay.SelectionSpecify
 
setWidth(int) - Method in class net.imagej.plugins.tools.SprayCanTool
 
setX(double) - Method in class net.imagej.omero.legacy.text.OMEROText
Sets the x coordinate of where the text starts.
setY(double) - Method in class net.imagej.omero.legacy.text.OMEROText
Sets the y coordinate of the base of where the text starts.
setyFixedScale(boolean) - Method in class net.imagej.options.OptionsProfilePlot
 
setZero() - Method in class net.imagej.types.BigComplex
Sets this BigComplex to the zero value.
setZero() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
setZero() - Method in class net.imagej.types.PreciseFixedFloatType
 
setZero() - Method in class net.imagej.types.UnboundedIntegerType
 
setZm(BigComplex) - Method in class net.imagej.ops.features.zernike.helper.ZernikeMoment
Set zernike moment in complex representation
setZoom(double) - Method in class net.imagej.display.DefaultImageCanvas
 
setZoom(double) - Method in interface net.imagej.display.Zoomable
Zooms to the given scale factor, without changing the viewport's center.
setZoomAndCenter(double) - Method in class net.imagej.display.DefaultImageCanvas
 
setZoomAndCenter(double, RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
setZoomAndCenter(double) - Method in interface net.imagej.display.Zoomable
Zooms to the given scale factor, recentering the viewport at the center of the data space.
setZoomAndCenter(double, RealCoords) - Method in interface net.imagej.display.Zoomable
Zooms to the given scale factor, recentering the viewport at the specified data coordinates.
setZoomAtPoint(double, RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
setZoomAtPoint(double, IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
setZoomAtPoint(double, RealCoords) - Method in interface net.imagej.display.Zoomable
Zooms to the given scale factor, such that the specified position in data coordinates remains at the same place in the viewport.
setZoomAtPoint(double, IntCoords) - Method in interface net.imagej.display.Zoomable
Zooms to the given scale factor, such that the specified position in panel coordinates remains at the same place in the viewport.
setZoomPercent(double) - Method in class net.imagej.plugins.commands.zoom.ZoomSet
 
SFTPFileUploader - Class in net.imagej.plugins.uploaders.ssh
Uploads files to an update server using only SFTP protocol.
SFTPFileUploader() - Constructor for class net.imagej.plugins.uploaders.ssh.SFTPFileUploader
 
ShadowsDemo - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows Demo plugin functionality.
ShadowsDemo() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsDemo
 
ShadowsEast - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows East plugin functionality.
ShadowsEast() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsEast
 
ShadowsNorth - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows North plugin functionality.
ShadowsNorth() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsNorth
 
ShadowsNortheast - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows Northeast plugin functionality.
ShadowsNortheast() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsNortheast
 
ShadowsNorthwest - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows Northwest plugin functionality.
ShadowsNorthwest() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsNorthwest
 
ShadowsSouth - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows South plugin functionality.
ShadowsSouth() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsSouth
 
ShadowsSoutheast - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows Southeast plugin functionality.
ShadowsSoutheast() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsSoutheast
 
ShadowsSouthwest - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows Southwest plugin functionality.
ShadowsSouthwest() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsSouthwest
 
ShadowsWest - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Shadows West plugin functionality.
ShadowsWest() - Constructor for class net.imagej.plugins.commands.correlate.ShadowsWest
 
Shanbhag() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Shanbhag
 
shanbhag(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
shanbhag(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
shanbhag(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
shanbhag(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
shanbhag(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
shanbhag(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
shape - Variable in class net.imagej.omero.roi.AbstractOMERORealMaskRealInterval
 
shape - Variable in class net.imagej.ops.threshold.apply.LocalThresholdIntegral
 
shapeDataEquals(ShapeData, ShapeData) - Static method in class net.imagej.omero.roi.ROIConverters
Checks if the two given ShapeData objects are equivalent.
ShapeDataToTransformedOMERORealMaskRealInterval - Class in net.imagej.omero.roi.transform
Converts a transformed ShapeData to a TransformedOMERORealMaskRealInterval.
ShapeDataToTransformedOMERORealMaskRealInterval() - Constructor for class net.imagej.omero.roi.transform.ShapeDataToTransformedOMERORealMaskRealInterval
 
ShapeRoiToMaskRealIntervalConverter - Class in net.imagej.legacy.convert.roi
Converts an ImageJ 1.x ShapeRoi to an ImgLib2 RealMaskRealInterval.
ShapeRoiToMaskRealIntervalConverter() - Constructor for class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter
 
ShapeRoiToMaskRealIntervalOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.ShapeRoiToMaskRealIntervalOMEROConverter
 
ShapeRoiWrapper - Class in net.imagej.legacy.convert.roi
Wraps an ImageJ 1.x ShapeRoi as an ImgLib2 RealMaskRealInterval.
ShapeRoiWrapper(ShapeRoi) - Constructor for class net.imagej.legacy.convert.roi.ShapeRoiWrapper
 
ShapeRoiWrapperToMaskData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.ShapeRoiWrapperToMaskData
 
SharpenDataValues - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Sharpen plugin functionality
SharpenDataValues() - Constructor for class net.imagej.plugins.commands.correlate.SharpenDataValues
 
shearView(RandomAccessible<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace
Positive shear transform of a RandomAccessible using ShearTransform , i.e.
shearView(RandomAccessible<T>, Interval, int, int) - Method in class net.imagej.ops.transform.TransformNamespace
Positive shear transform of a RandomAccessible using ShearTransform , i.e.
ShearViewInterval<T> - Class in net.imagej.ops.transform.shearView
ShearViewInterval() - Constructor for class net.imagej.ops.transform.shearView.ShearViewInterval
 
shiftKeyDown() - Method in class net.imagej.legacy.IJ1Helper
Ask ImageJ 1.x whether it thinks whether the Shift key is held down.
shortName() - Method in interface net.imagej.types.DataType
A short name useful for displaying to user.
shortName() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
shortName() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
shortName() - Method in class net.imagej.types.DataType16BitSignedInteger
 
shortName() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
shortName() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
shortName() - Method in class net.imagej.types.DataType32BitSignedFloat
 
shortName() - Method in class net.imagej.types.DataType32BitSignedInteger
 
shortName() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
shortName() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
shortName() - Method in class net.imagej.types.DataType64BitSignedFloat
 
shortName() - Method in class net.imagej.types.DataType64BitSignedInteger
 
shortName() - Method in class net.imagej.types.DataType8BitSignedInteger
 
shortName() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
shortName() - Method in class net.imagej.types.DataTypeBoolean
 
shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
shortName() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
ShortTableToResultsTable() - Constructor for class net.imagej.legacy.convert.TableToResultsTableConverters.ShortTableToResultsTable
 
shouldKeepURL() - Method in class net.imagej.updater.UpdateSite
 
shouldRemindLater() - Static method in class net.imagej.updater.UpToDate
 
show() - Static method in class net.imagej.launcher.SplashScreen
 
show() - Method in class net.imagej.legacy.ui.LegacyUI
 
show(Display<?>) - Method in class net.imagej.legacy.ui.LegacyUI
 
show(String) - Method in class net.imagej.matlab.ImageJMATLABCommands
Take an array variable in MATLAB and attempt to display it as a Dataset in ImageJ
show() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
show(Diff.Mode) - Method in class net.imagej.ui.swing.updater.DiffFile
Switch to a different diff mode.
show(Runnable) - Method in class net.imagej.ui.swing.updater.DiffFile
Show a different diff.
show(List<String>) - Method in class net.imagej.updater.CommandLine
 
show(String) - Method in class net.imagej.updater.CommandLine
 
show(FileObject) - Method in class net.imagej.updater.CommandLine
 
showChanges - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
showContextMenu(String, Display<?>, int, int) - Method in class net.imagej.legacy.ui.LegacyUI
 
showDialog() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
showDialog() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
showDiff(String, URL, URL, Diff.Mode) - Method in class net.imagej.updater.Diff
Show the differences between remote and local versions of a file.
showFileDetails(FileObject) - Method in class net.imagej.ui.swing.updater.FileDetails
 
showHelp() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
showHelp() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
ShowInfo - Class in net.imagej.plugins.commands.misc
Returns a multiline string containing metadata information about a given ImageDisplay.
ShowInfo() - Constructor for class net.imagej.plugins.commands.misc.ShowInfo
 
ShowLUT - Class in net.imagej.plugins.commands.display
This class adapted from legacy ImageJ's LutViewer class.
ShowLUT() - Constructor for class net.imagej.plugins.commands.display.ShowLUT
 
ShowLUTAsTable - Class in net.imagej.plugins.commands.display
Loads the current ImageDisplay's color table into a ResultsTable.
ShowLUTAsTable() - Constructor for class net.imagej.plugins.commands.display.ShowLUTAsTable
 
showMessage(String, String) - Method in class net.imagej.legacy.IJ1Helper
 
showMessageBox(Component, String, int) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
showMessageWithCancel(String, String) - Method in class net.imagej.legacy.IJ1Helper
 
shownByDefault() - Method in class net.imagej.updater.FilesCollection
 
showOrHide() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
showProgress(double) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Updates the progress bar, where 0 <= progress <= 1.0.
showProgress(int, int) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Updates the progress bar, where the length of the bar is set to ( currentValue + 1) / finalValue of the maximum bar length.
showProgress(double) - Method in class net.imagej.patcher.LegacyHooks
Updates the progress bar, where 0 <= progress <= 1.0.
showProgress(int, int) - Method in class net.imagej.patcher.LegacyHooks
Updates the progress bar, where the length of the bar is set to (currentValue + 1) / finalValue of the maximum bar length.
showPrompt(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
showQuestion(Component, String, String) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
showStatus(String) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Shows a status message.
showStatus(String) - Method in class net.imagej.patcher.LegacyHooks
Shows a status message.
showStatus(String) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
showStatus(String) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
showStatus(String) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
showStatus(String) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
showYesNoQuestion(String, String) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
showYesNoQuestion(Component, String, String) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
shuffle(int[], Random) - Static method in class net.imagej.ops.coloc.ColocUtil
Fisher-Yates shuffle.
shuffleBlocks() - Method in class net.imagej.ops.coloc.ShuffledView
 
shuffleBlocks(long) - Method in class net.imagej.ops.coloc.ShuffledView
 
ShuffledView<T> - Class in net.imagej.ops.coloc
Randomly shuffles an image blockwise.
ShuffledView(RandomAccessibleInterval<T>, int[], long) - Constructor for class net.imagej.ops.coloc.ShuffledView
 
shutDown() - Static method in class net.imagej.legacy.SingleInstance
Clean up remote objects
sideLength(int) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
 
sideLength(int) - Method in interface net.imagej.omero.roi.rectangle.OMERORectangle
 
sigma(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, Double, Double) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "sigma" filter operation on the given arguments.
sigma(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>, Double, Double) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "sigma" filter operation on the given arguments.
SigmaFilterOp<T,V> - Interface in net.imagej.ops.filter.sigma
A typed "sigma" filter.
signum(double) - Method in class net.imagej.ops.math.MathNamespace
 
signum(float) - Method in class net.imagej.ops.math.MathNamespace
 
signum(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Signum() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Signum
 
simpleMerge(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.Horizon
Merges another facet to this facet.
simpleString(CommandInfo) - Static method in class net.imagej.ops.OpUtils
Similar to OpUtils.opString(ModuleInfo) but prints a cleaner, more abstract representation of the Op method call in the format return <= baseOp(param1, param2).
simplify(Mesh, float, float) - Static method in class net.imagej.mesh.Meshes
Simplifies a given mesh.
sin(double) - Method in class net.imagej.ops.math.MathNamespace
 
sin(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Sin() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sin
 
sinc(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Sinc() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sinc
 
sincPi(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
SincPi() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.SincPi
 
SingleInputPreprocessor<T> - Class in net.imagej.display.process
Base class for preprocessors that populate single input parameters.
SingleInputPreprocessor(Class<T>) - Constructor for class net.imagej.display.process.SingleInputPreprocessor
 
SingleInstance - Class in net.imagej.legacy
This class tries to contact another instance on the same machine, started by the current user.
SingleInstance(int, LogService, IJ1Helper) - Constructor for class net.imagej.legacy.SingleInstance
 
SingleInstanceArgument - Class in net.imagej.legacy
Handles arguments relating to the single instance listener feature of ImageJ 1.x.
SingleInstanceArgument() - Constructor for class net.imagej.legacy.SingleInstanceArgument
 
sinh(double) - Method in class net.imagej.ops.math.MathNamespace
 
sinh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Sinh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sinh
 
sites - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
SitesDialog - Class in net.imagej.ui.swing.updater
The dialog in which the user can choose which update sites to follow.
SitesDialog(UpdaterFrame, FilesCollection) - Constructor for class net.imagej.ui.swing.updater.SitesDialog
 
SitesDialog.DataModel - Class in net.imagej.ui.swing.updater
 
size() - Method in class net.imagej.DefaultDataset
 
size() - Method in class net.imagej.ImgPlus
 
size() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
size() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
size() - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
 
size() - Method in class net.imagej.legacy.convert.TableListWrapper
 
size() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
size() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
size() - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
size() - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
size() - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
size() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
size() - Method in interface net.imagej.mesh.Triangles
Number of triangles in the collection.
size() - Method in interface net.imagej.mesh.Vertices
Number of vertices in the collection.
size() - Method in class net.imagej.omero.LazyTableList
 
size() - Method in class net.imagej.omero.legacy.LazyOverlay
size(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
size(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
size(IterableInterval<?>) - Method in class net.imagej.ops.geom.GeomNamespace
 
size(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
size() - Method in class net.imagej.ops.slice.SlicesII
 
size(IterableInterval<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
size(O, IterableInterval<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
size(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
size(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
size() - Method in class net.imagej.table.ResultsImg
 
sizeConvexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
sizeConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
sizeConvexHull(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
sizeConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
SizeII - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.Size.
SizeII() - Constructor for class net.imagej.ops.geom.SizeII
 
sizeToString(long) - Static method in class net.imagej.ui.swing.updater.UpdaterFrame
 
skew() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
skewness(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
skewness(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
skip - Static variable in class net.imagej.updater.util.FilterManifest
 
skip(long) - Method in class net.imagej.updater.util.SkipHashedLines
 
SkipHashedLines - Class in net.imagej.updater.util
A helper class for the Checksummer.
SkipHashedLines(InputStream) - Constructor for class net.imagej.updater.util.SkipHashedLines
 
skipShow() - Method in class net.imagej.updater.util.StderrProgress
 
slice(String[], int) - Static method in class net.imagej.launcher.ClassLauncher
 
slice(String[], int, int) - Static method in class net.imagej.launcher.ClassLauncher
 
slice(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, UnaryComputerOp<RandomAccessibleInterval<I>, RandomAccessibleInterval<O>>, int...) - Method in interface net.imagej.ops.OpEnvironment
Executes the "slicewise" operation on the given arguments.
slice(RandomAccessibleInterval<O>, RandomAccessibleInterval<I>, UnaryComputerOp<RandomAccessibleInterval<I>, RandomAccessibleInterval<O>>, int[], boolean) - Method in interface net.imagej.ops.OpEnvironment
Executes the "slicewise" operation on the given arguments.
SliceOp<I,O> - Interface in net.imagej.ops.slice
A typed "slice" function.
SliceRAI2RAI<I,O> - Class in net.imagej.ops.slice
SliceOp implementation for RandomAccessibleInterval input and RandomAccessibleInterval output.
SliceRAI2RAI() - Constructor for class net.imagej.ops.slice.SliceRAI2RAI
 
slices(RandomAccessibleInterval<T>, int) - Static method in class net.imagej.notebook.chart.Charts
 
SlicesII<T> - Class in net.imagej.ops.slice
Helper class to iterate through subsets of RandomAccessibleIntervals (e.g.
SlicesII(RandomAccessibleInterval<T>, int[], boolean) - Constructor for class net.imagej.ops.slice.SlicesII
 
SlicesII(RandomAccessibleInterval<T>, int[]) - Constructor for class net.imagej.ops.slice.SlicesII
 
SliceUtils - Class in net.imagej.ops.slice
 
SliceUtils() - Constructor for class net.imagej.ops.slice.SliceUtils
 
slope(double, double, double, double) - Static method in class net.imagej.axis.DefaultLinearAxis
Returns the slope of the line connecting two points.
smallestEnclosingBoundingBox(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
smallestEnclosingBoundingBox(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
SmoothDataValues - Class in net.imagej.plugins.commands.correlate
Implements legacy ImageJ's Smooth plugin functionality
SmoothDataValues() - Constructor for class net.imagej.plugins.commands.correlate.SmoothDataValues
 
sobel(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace
 
sobel(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.FilterNamespace
 
SobelRAI<T extends RealType<T>> - Class in net.imagej.ops.filter.sobel
Sobel filter implementation using separated sobel kernel.
SobelRAI() - Constructor for class net.imagej.ops.filter.sobel.SobelRAI
 
SOLID_LINE_STYLE - Static variable in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
solidity(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
solidity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
solidity(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
solidity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
solidLineStyle - Static variable in class net.imagej.options.OptionsOverlay
 
sort() - Method in class net.imagej.display.OverlayInfoList
 
sort(int[], IntComparator) - Static method in class net.imagej.ops.coloc.IntArraySorter
 
sort() - Method in class net.imagej.ops.coloc.MergeSort
Sorts the MergeSort.data array.
sort() - Method in class net.imagej.updater.FilesCollection
 
source - Variable in class net.imagej.updater.UploadableFile
 
Sourced - Interface in net.imagej
Interface for classes who track their source.
SourceOptimizedCompositeXYProjector<A,S extends RandomAccessibleInterval<A> & IterableInterval<A>,T extends RandomAccessibleInterval<ARGBType> & IterableInterval<ARGBType>> - Class in net.imagej.display
As CompositeXYProjector but uses a source that is both a RandomAccessibleInterval and an IterableInterval, and a RandomAccessibleInterval target.
SourceOptimizedCompositeXYProjector(S, T, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imagej.display.SourceOptimizedCompositeXYProjector
 
SourceSearchActionFactory - Class in net.imagej.legacy.search
Search action for viewing the source code of a SciJava module.
SourceSearchActionFactory() - Constructor for class net.imagej.legacy.search.SourceSearchActionFactory
 
SpaceUtils - Class in net.imagej.space
Utility methods for working with EuclideanSpace, particularly TypedSpace.
spareness(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
spareness(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
SpecialOp - Interface in net.imagej.ops.special
A special operation is one intended to be used repeatedly from other ops.
SpecialOp.Flavor - Enum in net.imagej.ops.special
An enumeration of the primary kinds of special ops.
SpectralComposite - Class in net.imagej.plugins.commands.display
Creates a series of lookup tables according to the given range of wavelengths, compositing them together to produce the final visualization.
SpectralComposite() - Constructor for class net.imagej.plugins.commands.display.SpectralComposite
 
SPECTRUM - Static variable in class net.imagej.display.ColorTables
 
sphericity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
sphericity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
SplashScreen - Class in net.imagej.launcher
Application splash screen.
SplashScreen() - Constructor for class net.imagej.launcher.SplashScreen
 
SplitChannelsContext - Class in net.imagej.plugins.commands.restructure
Context menu command for Split Channels legacy command.
SplitChannelsContext() - Constructor for class net.imagej.plugins.commands.restructure.SplitChannelsContext
 
SplitChannelsContextMonitor - Class in net.imagej.plugins.commands.restructure
Service that monitors context for the SplitChannelsContext plugin.
SplitChannelsContextMonitor() - Constructor for class net.imagej.plugins.commands.restructure.SplitChannelsContextMonitor
 
SprayCanTool - Class in net.imagej.plugins.tools
Implements a spray can drawing tool
SprayCanTool() - Constructor for class net.imagej.plugins.tools.SprayCanTool
 
SprayCanToolConfig - Class in net.imagej.plugins.tools
Implements the configuration code for SprayCanTool.
SprayCanToolConfig() - Constructor for class net.imagej.plugins.tools.SprayCanToolConfig
 
sqr(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Sqr() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sqr
 
sqrt(double) - Method in class net.imagej.ops.math.MathNamespace
 
sqrt(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Sqrt() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Sqrt
 
sqrt(PreciseFixedFloatType) - Static method in class net.imagej.types.PreciseFixedFloatType
Uses Newton Raphson to compute the square root of a BigDecimal.
SquareDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by taking the square of the data values of an input Dataset.
SquareDataValues() - Constructor for class net.imagej.plugins.commands.assign.SquareDataValues
 
squareIntegral(RandomAccessibleInterval<RealType>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
 
squareIntegral(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
 
SquareIntegralImg<I extends RealType<I>> - Class in net.imagej.ops.image.integral
n-dimensional squared integral image that stores sums using RealType.
SquareIntegralImg() - Constructor for class net.imagej.ops.image.integral.SquareIntegralImg
 
SquareRootDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by taking the square root of the data values of an input Dataset.
SquareRootDataValues() - Constructor for class net.imagej.plugins.commands.assign.SquareRootDataValues
 
SSH_HOST - Static variable in class net.imagej.updater.util.UpdaterUtil
 
SSHFileUploader - Class in net.imagej.plugins.uploaders.ssh
Uploads files to an update server using SSH.
SSHFileUploader() - Constructor for class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
SSLUtils - Class in net.imagej.omero
 
SSLUtils() - Constructor for class net.imagej.omero.SSLUtils
 
stackCorners(EulerCorrection.Traverser<B>) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
Counts the foreground voxels in stack corners
stackEdges(EulerCorrection.Traverser<B>) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
Count the foreground voxels on the edges lining the stack
stackFaces(EulerCorrection.Traverser<B>) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
Count the foreground voxels on the faces that line the stack
stackHistogram() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
stackView(List<? extends RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.TransformNamespace
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
stackView(List<? extends RandomAccessibleInterval<T>>, StackView.StackAccessMode) - Method in class net.imagej.ops.transform.TransformNamespace
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
StackViewWithAccessMode<T> - Class in net.imagej.ops.transform.stackView
Wraps the Views#stack(StackAccessMode, List) method.
StackViewWithAccessMode() - Constructor for class net.imagej.ops.transform.stackView.StackViewWithAccessMode
 
stageForUninstall(FilesCollection) - Method in class net.imagej.updater.FileObject
 
stageForUpdate(FilesCollection, boolean) - Method in class net.imagej.updater.FileObject
 
stageForUpload(FilesCollection, String) - Method in class net.imagej.updater.FileObject
 
start() - Method in class net.imagej.animation.Animation
Starts the animation.
start(ImageDisplay) - Method in interface net.imagej.animation.AnimationService
Starts animation for the given ImageDisplay.
start(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
 
start() - Static method in class net.imagej.matlab.ImageJMATLAB
Starts a new instance of ImageJ from MATLAB.
start(boolean) - Static method in class net.imagej.matlab.ImageJMATLAB
Starts a new instance of ImageJ from MATLAB with or without verbose mode.
start(boolean, String...) - Static method in class net.imagej.matlab.ImageJMATLAB
Starts a new instance of ImageJ from MATLAB.
start(ClassPool) - Method in class net.imagej.patcher.MemoryProfiler
 
start(ClassPool) - Method in class net.imagej.patcher.PerformanceProfiler
 
start(String...) - Method in class net.imagej.server.DefaultImageJServerService
 
start(String...) - Method in interface net.imagej.server.ImageJServerService
Launches an instance of the ImageJ Server.
start() - Method in class net.imagej.updater.Installer
 
start(Downloadable) - Method in class net.imagej.updater.util.Downloader
 
start(Iterable<Downloadable>) - Method in class net.imagej.updater.util.Downloader
 
start() - Method in class net.imagej.updater.XMLFileDownloader
 
start(boolean) - Method in class net.imagej.updater.XMLFileDownloader
 
StartAnimation - Class in net.imagej.plugins.commands.animation
Plugin for toggling an ImageDisplay's running animation.
StartAnimation() - Constructor for class net.imagej.plugins.commands.animation.StartAnimation
 
startDocument() - Method in class net.imagej.updater.POMParser
 
startDocument() - Method in class net.imagej.updater.XMLFileReader
 
startElement(String, String, String, Attributes) - Method in class net.imagej.updater.POMParser
 
startElement(String, String, String, Attributes) - Method in class net.imagej.updater.XMLFileReader
 
startingValue - Variable in class net.imagej.server.WebCommandModuleItem
 
startProfiling(String, String...) - Static method in class net.imagej.patcher.PerformanceProfiler
Convenience method to call in your main(String[]) method.
startRecording(String) - Method in class net.imagej.legacy.IJ1Helper
Begins recording of a command.
StartServer - Class in net.imagej.server.commands
Starts the ImageJ Server, if one is not already running.
StartServer() - Constructor for class net.imagej.server.commands.StartServer
 
startsWith(String) - Method in class net.imagej.updater.FilesCollection
 
startsWith(String...) - Method in class net.imagej.updater.FilesCollection
 
startWith(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
 
StatisticsDemo - Class in net.imagej.plugins.commands.debug
Shows how to use the StatisticsService.
StatisticsDemo() - Constructor for class net.imagej.plugins.commands.debug.StatisticsDemo
 
stats() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "stats" namespace.
StatsNamespace - Class in net.imagej.ops.stats
The stats namespace contains operations related to numerical statistics.
StatsNamespace() - Constructor for class net.imagej.ops.stats.StatsNamespace
 
StatsOp<I,O> - Interface in net.imagej.ops.stats
marker interface for statistic ops.
status() - Method in class net.imagej.legacy.LegacyService
Gets the StatusService associated with this LegacyService.
status - Variable in class net.imagej.ops.filter.AbstractIterativeFFTFilterC
 
statusService - Variable in class net.imagej.ui.swing.updater.SwingUserInterface
 
stdDev(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
stdDev(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
stdDev() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
StderrInterface() - Constructor for class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
StderrLogService - Class in net.imagej.updater.util
Deprecated.
Use StderrLogService instead.
StderrLogService() - Constructor for class net.imagej.updater.util.StderrLogService
Deprecated.
 
StderrProgress - Class in net.imagej.updater.util
A default implementation of the Progress interface.
StderrProgress() - Constructor for class net.imagej.updater.util.StderrProgress
 
StderrProgress(int) - Constructor for class net.imagej.updater.util.StderrProgress
 
step(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Step() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Step
 
STLMeshIO - Class in net.imagej.mesh.io.stl
A plugin for reading and writing STL files.
STLMeshIO() - Constructor for class net.imagej.mesh.io.stl.STLMeshIO
 
stop() - Method in class net.imagej.animation.Animation
Stops the animation.
stop(ImageDisplay) - Method in interface net.imagej.animation.AnimationService
Stops animation for the given ImageDisplay.
stop(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
 
stop() - Static method in class net.imagej.patcher.JavaAgent
 
stop() - Method in class net.imagej.server.ImageJServer
 
stop() - Method in class net.imagej.server.resources.AdminResource
Stop the imagej-server.
stopAll() - Method in interface net.imagej.animation.AnimationService
Stops all animations.
stopAll() - Method in class net.imagej.animation.DefaultAnimationService
 
StopAllAnimations - Class in net.imagej.plugins.commands.animation
Plugin for terminating running animations of all ImageDisplays.
StopAllAnimations() - Constructor for class net.imagej.plugins.commands.animation.StopAllAnimations
 
StopAnimation - Class in net.imagej.plugins.commands.animation
Plugin for terminating an ImageDisplay's running animation.
StopAnimation() - Constructor for class net.imagej.plugins.commands.animation.StopAnimation
 
StopServer - Class in net.imagej.server.commands
Stops the ImageJ Server, if one is running.
StopServer() - Constructor for class net.imagej.server.commands.StopServer
 
StringAndFile(String, File) - Constructor for class net.imagej.updater.Checksummer.StringAndFile
 
stringfieldIndex - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
stringfieldIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
strings - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
strings - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
StringToImagePlusConverter - Class in net.imagej.legacy.convert
Converts a string to the corresponding ImagePlus object.
StringToImagePlusConverter() - Constructor for class net.imagej.legacy.convert.StringToImagePlusConverter
 
StringToImagePlusConverter.ImageTitle - Class in net.imagej.legacy.convert
Adapter for ImagePlus that emits the image title when StringToImagePlusConverter.ImageTitle.toString() is called.
stripNamespace(String) - Static method in class net.imagej.ops.OpUtils
Gets the simple portion (without namespace) of the given op name.
stripPrefix(String, String) - Static method in class net.imagej.updater.util.UpdaterUtil
 
stripSuffix(String, String) - Static method in class net.imagej.updater.util.UpdaterUtil
 
styled(String, AttributeSet) - Method in class net.imagej.ui.swing.updater.DiffView
Add stylish text.
styled(int, String, AttributeSet) - Method in class net.imagej.ui.swing.updater.DiffView
Insert some stylish text.
styled(String, AttributeSet) - Method in class net.imagej.ui.swing.updater.FileDetails
 
sub(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
sub(Output<T>, Output<T>) - Method in class net.imagej.tensorflow.GraphBuilder
 
sub(Output<T>, Output<T>, String) - Method in class net.imagej.tensorflow.GraphBuilder
 
sub(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex
Set self to the result of subtraction between two BigComplex values.
sub(BigComplex) - Method in class net.imagej.types.BigComplex
Subtracts another BigComplex value from self.
sub(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
sub(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
sub(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
sub(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
sub(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
subList(int, int) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
subList(int, int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
subList(int, int) - Method in class net.imagej.legacy.convert.TableListWrapper
 
subList(int, int) - Method in class net.imagej.omero.LazyTableList
 
SubsampleIntervalViewStepsForDims<T> - Class in net.imagej.ops.transform.subsampleView
Wraps the Views.subsample(RandomAccessible, long[]) method while preserving interval bounds.
SubsampleIntervalViewStepsForDims() - Constructor for class net.imagej.ops.transform.subsampleView.SubsampleIntervalViewStepsForDims
 
subsampleView(RandomAccessible<T>, long) - Method in class net.imagej.ops.transform.TransformNamespace
Sample only every stepth value of a source RandomAccessible.
subsampleView(RandomAccessibleInterval<T>, long) - Method in class net.imagej.ops.transform.TransformNamespace
Sample only every stepth value of a source RandomAccessible while preserving interval bounds.
subsampleView(RandomAccessible<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace
Sample only every stepdth value of a source RandomAccessible.
subsampleView(RandomAccessibleInterval<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace
Sample only every stepdth value of a source RandomAccessible while preserving interval bounds.
SubsampleViewStepsForDims<T> - Class in net.imagej.ops.transform.subsampleView
SubsampleViewStepsForDims() - Constructor for class net.imagej.ops.transform.subsampleView.SubsampleViewStepsForDims
 
subscribeEvents(Context) - Static method in class net.imagej.legacy.IJ1Helper
 
Subtract(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
Subtract() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Subtract
 
Subtract() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
Subtract() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Subtract
 
Subtract() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Subtract
 
Subtract() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
subtract(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(ArrayImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(float, float) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(PlanarImg<N, A>, long) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(T, T) - Method in class net.imagej.ops.math.MathNamespace
 
subtract(T, T, T) - Method in class net.imagej.ops.math.MathNamespace
 
Subtract() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
subtract() - Method in class net.imagej.plugins.commands.debug.ButtonDemo
 
subtract(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
SubtractByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractByte
 
SubtractByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractByte
 
SubtractByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractByte
 
SubtractDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractDouble
 
SubtractDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractDouble
 
SubtractDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractDouble
 
SubtractFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractFloat
 
SubtractFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractFloat
 
SubtractFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractFloat
 
SubtractFromDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by subtracting a user defined constant value from an input Dataset.
SubtractFromDataValues() - Constructor for class net.imagej.plugins.commands.assign.SubtractFromDataValues
 
SubtractInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractInt
 
SubtractInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractInt
 
SubtractInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractInt
 
SubtractLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractLong
 
SubtractLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractLong
 
SubtractLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractLong
 
SubtractShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractShort
 
SubtractShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractShort
 
SubtractShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractShort
 
SubtractUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedByte
 
SubtractUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedByte
 
SubtractUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedByte
 
SubtractUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedInt
 
SubtractUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedInt
 
SubtractUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedInt
 
SubtractUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedLong
 
SubtractUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedLong
 
SubtractUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedLong
 
SubtractUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedShort
 
SubtractUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedShort
 
SubtractUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedShort
 
sum(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
sum(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
sumAverage(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
sumAverage(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
sumEntropy(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
sumEntropy(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
summaryPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
sumOfInverses(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
sumOfInverses(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
sumOfLogs(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
sumOfLogs(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
sumOfSquares(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
sumOfSquares(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
sumVariance(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
sumVariance(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
support(Class<?>) - Static method in class net.imagej.server.mixins.Mixins
Checks if a given class will be supported, i.e.
supportedType(R) - Method in class net.imagej.legacy.convert.roi.AbstractRoiToMaskPredicateConverter
 
supportedType(Roi) - Method in class net.imagej.legacy.convert.roi.box.RoiToBoxConverter
 
supportedType(OvalRoi) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiToEllipsoidConverter
 
supportedType(Line) - Method in class net.imagej.legacy.convert.roi.line.IJLineToLineConverter
 
supportedType(PointRoi) - Method in class net.imagej.legacy.convert.roi.point.PointRoiToRealPointCollectionConverter
 
supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiToPolygon2DConverter
 
supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToPolylineConverter
 
supportedType(PolygonRoi) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiToRealMaskRealIntervalConverter
 
supportedType(Roi) - Method in class net.imagej.legacy.convert.roi.RoiToMaskIntervalConverter
 
supportedType(ShapeRoi) - Method in class net.imagej.legacy.convert.roi.ShapeRoiToMaskRealIntervalConverter
 
supportedType(R) - Method in class net.imagej.omero.legacy.convert.AbstractIJRoiToMaskPredicate
 
supportedType(TextRoi) - Method in class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper
 
supports(BatchInput) - Method in class net.imagej.batch.input.DatasetBatchInputProvider
 
supports(Object) - Method in class net.imagej.legacy.LegacyCodeRunner
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Batch
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Debug
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Eval
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Filename
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.IJPath
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Macro
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Port
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.LegacyCommandline.Run
 
supports(SearchResult) - Method in class net.imagej.legacy.search.HelpSearchActionFactory
 
supports(SearchResult) - Method in class net.imagej.legacy.search.OpenTemplateSearchActionFactory
 
supports(SearchResult) - Method in class net.imagej.legacy.search.SourceSearchActionFactory
 
supports(LinkedList<String>) - Method in class net.imagej.legacy.SingleInstanceArgument
 
supports(File) - Method in class net.imagej.mesh.io.stl.STLMeshIO
 
supports(ConversionRequest) - Method in class net.imagej.ops.geom.geom2d.LabelRegionToPolygonConverter
 
supports(ConversionRequest) - Method in class net.imagej.ops.geom.geom3d.mesh.RAIToMeshConverter
 
supports(SearchResult) - Method in class net.imagej.ops.search.RunOpSearchActionFactory
 
supports(LinkedList<String>) - Method in class net.imagej.server.console.ServerArgument
 
supports(File) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
supports(Tool) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
Determines whether the adapter is designed to work with the given tool.
supports(Overlay, Figure) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
Determines whether the adapter can handle a particular overlay, or overlay / figure combination.
supports(Tool) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
supports(Tool) - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
 
supports(Overlay, Figure) - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
 
supports(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingColorTableWidget
 
supports(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingDimSelectionWidget
 
supports(WidgetModel) - Method in class net.imagej.ui.swing.widget.SwingHistogramWidget
 
supportsDisplay(Display<?>) - Method in class net.imagej.ui.dnd.LUTFileDragAndDropHandler
 
supportsGPU - Variable in class net.imagej.tensorflow.TensorFlowVersion
 
supportsHandleInteraction() - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
supportsHTTPS() - Static method in class net.imagej.updater.util.HTTPSUtil
 
supportsOpen(String) - Method in class net.imagej.lut.io.LUTIOPlugin
 
supportsOpen(String) - Method in class net.imagej.mesh.io.ply.PLYMeshIO
 
supportsOpen(String) - Method in class net.imagej.mesh.io.stl.STLMeshIO
 
supportsOpen(String) - Method in class net.imagej.mesh.io.xyz.XYZPointsIO
 
supportsOpen(String) - Method in class net.imagej.server.external.DefaultTableIOPlugin
 
supportsSave(String) - Method in class net.imagej.mesh.io.ply.PLYMeshIO
 
supportsSave(String) - Method in class net.imagej.mesh.io.stl.STLMeshIO
 
supportsSave(String) - Method in class net.imagej.server.external.DefaultTableIOPlugin
 
supportsURLProtocol(String) - Static method in class net.imagej.updater.util.HTTPSUtil
 
suppressIJ1ScriptDiscovery() - Method in class net.imagej.patcher.LegacyEnvironment
Disallows ImageJ 1.x from discovering macros and scripts to put into the menu structure.
SwingAngleTool - Class in net.imagej.ui.swing.tools
Swing/JHotDraw implementation of angle tool.
SwingAngleTool() - Constructor for class net.imagej.ui.swing.tools.SwingAngleTool
 
SwingAuthenticator - Class in net.imagej.ui.swing.updater
TODO
SwingAuthenticator() - Constructor for class net.imagej.ui.swing.updater.SwingAuthenticator
 
SwingColorBar - Class in net.imagej.ui.swing
A widget for displaying a ColorTable as a bar.
SwingColorBar() - Constructor for class net.imagej.ui.swing.SwingColorBar
 
SwingColorBar(int) - Constructor for class net.imagej.ui.swing.SwingColorBar
 
SwingColorBar(ColorTable) - Constructor for class net.imagej.ui.swing.SwingColorBar
 
SwingColorBar(ColorTable, int) - Constructor for class net.imagej.ui.swing.SwingColorBar
 
SwingColorTableWidget - Class in net.imagej.ui.swing.widget
Render a ColorTable in Swing.
SwingColorTableWidget() - Constructor for class net.imagej.ui.swing.widget.SwingColorTableWidget
 
SwingDimSelectionWidget - Class in net.imagej.ui.swing.widget
Default Swing implementation of dimension selector widget.
SwingDimSelectionWidget() - Constructor for class net.imagej.ui.swing.widget.SwingDimSelectionWidget
 
SwingEllipseTool - Class in net.imagej.ui.swing.tools
Swing/JHotDraw implementation of ellipse tool.
SwingEllipseTool() - Constructor for class net.imagej.ui.swing.tools.SwingEllipseTool
 
SwingHistogramWidget - Class in net.imagej.ui.swing.widget
Render a HistogramBundle in Swing.
SwingHistogramWidget() - Constructor for class net.imagej.ui.swing.widget.SwingHistogramWidget
 
SwingImageDisplayPanel - Class in net.imagej.ui.swing.viewer.image
Swing implementation of image display panel.
SwingImageDisplayPanel(SwingImageDisplayViewer, DisplayWindow) - Constructor for class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
SwingImageDisplayViewer - Interface in net.imagej.ui.swing.viewer.image
Interface for Swing-based image display viewers.
SwingLineTool - Class in net.imagej.ui.swing.tools
Swing/JHotDraw implementation of line tool.
SwingLineTool() - Constructor for class net.imagej.ui.swing.tools.SwingLineTool
 
SwingMdiImageDisplayViewer - Class in net.imagej.ui.swing.mdi.viewer
Multiple Document Interface implementation of Swing image display viewer.
SwingMdiImageDisplayViewer() - Constructor for class net.imagej.ui.swing.mdi.viewer.SwingMdiImageDisplayViewer
 
SwingOverlayManager - Class in net.imagej.ui.swing.overlay
Overlay Manager Swing UI
SwingOverlayManager(Context) - Constructor for class net.imagej.ui.swing.overlay.SwingOverlayManager
Creates a JList to list the overlays.
SwingPointTool - Class in net.imagej.ui.swing.tools
Swing/JHotDraw implementation of point tool.
SwingPointTool() - Constructor for class net.imagej.ui.swing.tools.SwingPointTool
 
SwingPolygonTool - Class in net.imagej.ui.swing.tools
Swing/JHotDraw implementation of polygon/freehand tool.
SwingPolygonTool() - Constructor for class net.imagej.ui.swing.tools.SwingPolygonTool
 
SwingPolylineTool - Class in net.imagej.ui.swing.tools
Swing/JHotDraw implementation of multi-segmented line tool.
SwingPolylineTool() - Constructor for class net.imagej.ui.swing.tools.SwingPolylineTool
 
SwingRectangleTool - Class in net.imagej.ui.swing.tools
Swing/JHotDraw implementation of rectangle tool.
SwingRectangleTool() - Constructor for class net.imagej.ui.swing.tools.SwingRectangleTool
 
SwingSdiImageDisplayViewer - Class in net.imagej.ui.swing.sdi.viewer
Single Document Interface implementation of Swing image display viewer.
SwingSdiImageDisplayViewer() - Constructor for class net.imagej.ui.swing.sdi.viewer.SwingSdiImageDisplayViewer
 
SwingTextTool - Class in net.imagej.ui.swing.tools
Swing/JHotDraw implementation of text tool.
SwingTextTool() - Constructor for class net.imagej.ui.swing.tools.SwingTextTool
 
SwingTools - Class in net.imagej.ui.swing.updater
Helper functions to instantiated Swing components.
SwingTools() - Constructor for class net.imagej.ui.swing.updater.SwingTools
 
SwingUserInterface - Class in net.imagej.ui.swing.updater
TODO
SwingUserInterface(LogService, StatusService) - Constructor for class net.imagej.ui.swing.updater.SwingUserInterface
 
syncActiveImage(ImageDisplay) - Method in class net.imagej.legacy.IJ1Helper
 
syncActiveImage() - Method in class net.imagej.legacy.LegacyService
Ensures that the currently active ImagePlus matches the currently active ImageDisplay.
synchronize() - Method in class net.imagej.legacy.convert.roi.box.BoxWrapper
 
synchronize() - Method in class net.imagej.legacy.convert.roi.ellipsoid.EllipsoidWrapper
 
synchronize() - Method in class net.imagej.legacy.convert.roi.line.LineWrapper
 
synchronize() - Method in interface net.imagej.legacy.convert.roi.MaskPredicateWrapper
Modify the associated MaskPredicate to match the "state" of this Roi.
synchronize() - Method in class net.imagej.legacy.convert.roi.point.PointMaskWrapper
 
synchronize() - Method in class net.imagej.legacy.convert.roi.point.RealPointCollectionWrapper
 
synchronize() - Method in class net.imagej.legacy.convert.roi.polygon2d.Polygon2DWrapper
 
synchronize() - Method in class net.imagej.legacy.convert.roi.polyline.PolylineWrapper
 
synchronize() - Method in class net.imagej.legacy.convert.TableListWrapper
Synchronizes this and the source List<Table<?, ?>>.
synchronize() - Method in class net.imagej.omero.legacy.mask.OMEROMaskWrapper
 
synchronize() - Method in class net.imagej.omero.legacy.text.OMEROTextWrapper
 
synchronizeShapeData(ShapeData, ShapeData) - Static method in class net.imagej.omero.roi.ROIConverters
Synchronizes oldShape to be equivalent to updatedShape, with the exception of ID.
synchronizeShapeSettings(ShapeSettingsData, ShapeSettingsData) - Static method in class net.imagej.omero.roi.ROIConverters
Updates the oldSettings to be equivalent to updatedSettings.
SynchronizeWindows - Class in net.imagej.plugins.commands.display.interactive
Place holder for the future implementation of the Synchronize Windows command.
SynchronizeWindows() - Constructor for class net.imagej.plugins.commands.display.interactive.SynchronizeWindows
 

T

tab(Component, String, String, int, int, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
table - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
table - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
TABLE_PROPERTY - Static variable in interface net.imagej.table.TableService
 
tableChanged(TableModelEvent) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
TableDemo - Class in net.imagej.plugins.commands.debug
A demonstration of the org.scijava.table and net.imagej.table packages.
TableDemo() - Constructor for class net.imagej.plugins.commands.debug.TableDemo
 
TableListWrapper - Class in net.imagej.legacy.convert
 
TableListWrapper(List<Table<?, ?>>, ConvertService) - Constructor for class net.imagej.legacy.convert.TableListWrapper
 
tableModel - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
TableService - Interface in net.imagej.table
Service for working with Tables.
TableToHTMLConverter - Class in net.imagej.notebook.table
Converter from Table to HTMLObject.
TableToHTMLConverter() - Constructor for class net.imagej.notebook.table.TableToHTMLConverter
 
TableToResultsTableConverters - Class in net.imagej.legacy.convert
Converters which convert Table to ResultsTable.
TableToResultsTableConverters.AbstractTableToResultsTableConverter<A extends Table<?,?>> - Class in net.imagej.legacy.convert
Abstract base class for converting Table to ResultsTable.
TableToResultsTableConverters.ByteTableToResultsTable - Class in net.imagej.legacy.convert
Converts a ByteTable to a ResultsTable.
TableToResultsTableConverters.FloatTableToResultsTable - Class in net.imagej.legacy.convert
Converts a FloatTable to a ResultsTable.
TableToResultsTableConverters.GenericTableToResultsTable - Class in net.imagej.legacy.convert
Converts a GenericTable to a ResultsTable.
TableToResultsTableConverters.IntTableToResultsTable - Class in net.imagej.legacy.convert
Converts a IntTable to a ResultsTable.
TableToResultsTableConverters.LongTableToResultsTable - Class in net.imagej.legacy.convert
Converts a LongTable to a ResultsTable.
TableToResultsTableConverters.ResultsTableToResultsTable - Class in net.imagej.legacy.convert
Converts a DoubleTable to a ResultsTable.
TableToResultsTableConverters.ShortTableToResultsTable - Class in net.imagej.legacy.convert
Converts a ShortTable to a ResultsTable.
TableUnwrapper - Class in net.imagej.legacy.convert
Converts a TableWrapper to a Table, by unwrapping it.
TableUnwrapper() - Constructor for class net.imagej.legacy.convert.TableUnwrapper
 
TableUtils - Class in net.imagej.omero
Utility class for working with converting between ImageJ and OMERO tables.
tableWidth - Variable in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
TableWrapper - Class in net.imagej.legacy.convert
Wraps an Table as a ResultsTable.
TableWrapper(Table<?, ?>, ConvertService) - Constructor for class net.imagej.legacy.convert.TableWrapper
 
tamura() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "tamura" namespace.
TamuraFeature<I extends RealType<I>,O extends RealType<O>> - Interface in net.imagej.ops.features.tamura2d
Marker interface for tamura features.
TamuraNamespace - Class in net.imagej.ops.features.tamura2d
Namespace for Tamura features
TamuraNamespace() - Constructor for class net.imagej.ops.features.tamura2d.TamuraNamespace
 
tan(double) - Method in class net.imagej.ops.math.MathNamespace
 
tan(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Tan() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Tan
 
tanh(double) - Method in class net.imagej.ops.math.MathNamespace
 
tanh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Tanh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Tanh
 
tensor(RandomAccessibleInterval<T>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given image.
tensor(RandomAccessibleInterval<T>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given image.
tensorByte(RandomAccessibleInterval<ByteType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given byte image.
tensorByte(RandomAccessibleInterval<ByteType>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given byte image.
tensorByteDirect(RandomAccessibleInterval<ByteType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given byte image.
tensorDirect(RandomAccessibleInterval<T>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given image.
tensorDouble(RandomAccessibleInterval<DoubleType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given double image.
tensorDouble(RandomAccessibleInterval<DoubleType>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given double image.
tensorDoubleDirect(RandomAccessibleInterval<DoubleType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given double image.
tensorFloat(RandomAccessibleInterval<FloatType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given float image.
tensorFloat(RandomAccessibleInterval<FloatType>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given float image.
tensorFloatDirect(RandomAccessibleInterval<FloatType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given float image.
TensorFlowLibraryManagementCommand - Class in net.imagej.tensorflow.ui
This command provides an interface for activating a specific Java TensorFlow version.
TensorFlowLibraryManagementCommand() - Constructor for class net.imagej.tensorflow.ui.TensorFlowLibraryManagementCommand
 
TensorFlowLibraryStatus - Class in net.imagej.tensorflow
The loading status of the TensorFlow native library.
TensorFlowService - Interface in net.imagej.tensorflow
Service for working with TensorFlow.
TensorFlowUtil - Class in net.imagej.tensorflow.util
Utility methods for dealing with the Java TensorFlow library
TensorFlowVersion - Class in net.imagej.tensorflow
A class describing the details of a specific TensorFlow version.
TensorFlowVersion(String, Boolean, String, String) - Constructor for class net.imagej.tensorflow.TensorFlowVersion
 
TensorFlowVersion(TensorFlowVersion) - Constructor for class net.imagej.tensorflow.TensorFlowVersion
 
tensorInt(RandomAccessibleInterval<IntType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given int image.
tensorInt(RandomAccessibleInterval<IntType>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given int image.
tensorIntDirect(RandomAccessibleInterval<IntType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given int image.
tensorLong(RandomAccessibleInterval<LongType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given long image.
tensorLong(RandomAccessibleInterval<LongType>, int[]) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given long image.
tensorLongDirect(RandomAccessibleInterval<LongType>) - Static method in class net.imagej.tensorflow.Tensors
Creates a TensorFlow Tensor containing data from the given long image.
Tensors - Class in net.imagej.tensorflow
Utility class for working with TensorFlow Tensor objects.
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.box.RoiWrapper
test(Localizable) - Method in class net.imagej.legacy.convert.roi.DefaultRoiWrapper
 
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.ellipsoid.OvalRoiWrapper
 
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.line.IJLineWrapper
 
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.point.PointRoiWrapper
 
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.IrregularPolylineRoiWrapper
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
 
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper
 
test(RealLocalizable) - Method in class net.imagej.legacy.convert.roi.ShapeRoiWrapper
 
test(RealLocalizable) - Method in class net.imagej.omero.legacy.text.OMEROText
test(RealLocalizable) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
test(RealLocalizable) - Method in class net.imagej.omero.roi.ellipse.ClosedOMEROEllipse
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.ellipse.OpenOMEROEllipse
 
test(RealLocalizable) - Method in interface net.imagej.omero.roi.line.OMEROLine
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask
The given RealLocalizable will be rounded to the nearest integer coordinates.
test(RealLocalizable) - Method in interface net.imagej.omero.roi.point.OMEROPoint
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.polyshape.ClosedOMEROPolygon
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.polyshape.DefaultOMEROPolygon
 
test(RealLocalizable) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyline
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.polyshape.OpenOMEROPolygon
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.project.OMEROZTCProjectedRealMask
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.project.ProjectedOMERORealMask
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.rectangle.ClosedOMERORectangle
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.rectangle.OpenOMERORectangle
 
test(RealLocalizable) - Method in class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval
 
testPosition(TypedAxis, double) - Method in interface net.imagej.omero.roi.OMERORealMask
 
testPosition(TypedAxis, double) - Method in interface net.imagej.omero.roi.OMERORealMaskRealInterval
 
texCoords() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
textArea1 - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
textArea1 - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
textArea2 - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
textArea2 - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
textAreaIndex - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
textAreaIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
TextOverlay - Class in net.imagej.overlay
Represents an Overlay that contains a string of text.
TextOverlay(Context, double, double, String, TextOverlay.Justification) - Constructor for class net.imagej.overlay.TextOverlay
 
TextOverlay(Context, double, double, String) - Constructor for class net.imagej.overlay.TextOverlay
 
TextOverlay(Context, double, double) - Constructor for class net.imagej.overlay.TextOverlay
 
TextOverlay(Context) - Constructor for class net.imagej.overlay.TextOverlay
 
TextOverlay.Justification - Enum in net.imagej.overlay
 
textPane - Variable in class net.imagej.ui.swing.updater.DiffView
 
TextRenderer - Interface in net.imagej.render
Basic text renderer interface, which renders text into an int[] buffer.
TextRenderer.FontFamily - Enum in net.imagej.render
 
TextRenderer.FontStyle - Enum in net.imagej.render
 
TextRenderer.TextJustification - Enum in net.imagej.render
 
TextRoiToTextRoiWrapper - Class in net.imagej.omero.legacy.text
Wraps a TextRoi to a TextRoiWrapper.
TextRoiToTextRoiWrapper() - Constructor for class net.imagej.omero.legacy.text.TextRoiToTextRoiWrapper
 
TextRoiToTextRoiWrapperOMEROConverter() - Constructor for class net.imagej.omero.legacy.convert.IJROIToMaskPredicateWrappers.TextRoiToTextRoiWrapperOMEROConverter
 
TextRoiUnwrapper - Class in net.imagej.omero.legacy.text
TextRoiUnwrapper() - Constructor for class net.imagej.omero.legacy.text.TextRoiUnwrapper
 
TextRoiWrapper - Class in net.imagej.omero.legacy.text
TextRoiWrapper(TextRoi) - Constructor for class net.imagej.omero.legacy.text.TextRoiWrapper
 
TextRoiWrapperToTextData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.TextRoiWrapperToTextData
 
textureHomogeneity(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
textureHomogeneity(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
tfVersion - Variable in class net.imagej.tensorflow.TensorFlowVersion
 
thinGuoHall(RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
thinGuoHall(RandomAccessibleInterval, RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
ThinGuoHall - Class in net.imagej.ops.morphology.thin
Thinning Operation
ThinGuoHall() - Constructor for class net.imagej.ops.morphology.thin.ThinGuoHall
 
thinHilditch(RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
thinHilditch(RandomAccessibleInterval, RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
ThinHilditch - Class in net.imagej.ops.morphology.thin
Thinning Operation
ThinHilditch() - Constructor for class net.imagej.ops.morphology.thin.ThinHilditch
 
thinMorphological(RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
thinMorphological(RandomAccessibleInterval, RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
ThinMorphological - Class in net.imagej.ops.morphology.thin
Thinning Operation
ThinMorphological() - Constructor for class net.imagej.ops.morphology.thin.ThinMorphological
 
ThinningStrategy - Interface in net.imagej.ops.morphology.thin
An interface for a simple thinning strategy employed by the thinningOp.
thinZhangSuen(RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
thinZhangSuen(RandomAccessibleInterval, RandomAccessibleInterval) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
ThinZhangSuen - Class in net.imagej.ops.morphology.thin
Thinning Operation
ThinZhangSuen() - Constructor for class net.imagej.ops.morphology.thin.ThinZhangSuen
 
thread() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "thread" namespace.
THREAD_COUNT - Static variable in class net.imagej.util.MirrorWebsite
 
Threadable - Interface in net.imagej.ops
Interface for objects intended to be reused across multiple threads simultaneously.
ThreadNamespace - Class in net.imagej.ops.thread
The thread namespace contains operations related to multithreading.
ThreadNamespace() - Constructor for class net.imagej.ops.thread.ThreadNamespace
 
threadService - Variable in class net.imagej.ops.thread.chunker.AbstractChunker
ThreadService used for multi-threading
threshEachPlane - Variable in class net.imagej.plugins.commands.binary.AbstractBinaryCommand
 
threshold() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "threshold" namespace.
Threshold<T extends RealType<T>> - Class in net.imagej.plugins.commands.display.interactive
Threshold is the Command that allows one to interactively create and manipulate ThresholdOverlays for a ImageDisplay.
Threshold() - Constructor for class net.imagej.plugins.commands.display.interactive.Threshold
 
thresholdComputer - Variable in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
thresholdEachPlane() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets whether to threshold each plane separately or to threshold the whole image at once.
ThresholdFigure - Class in net.imagej.ui.swing.overlay
Implementation of JHotDraw Figure that can display a ThresholdOverlay
ThresholdFigure(ImageDisplay, Dataset, ThresholdOverlay) - Constructor for class net.imagej.ui.swing.overlay.ThresholdFigure
 
ThresholdJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for threshold overlays.
ThresholdJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
 
thresholdMethod() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets the threshold method used for pixel discrimination.
ThresholdNamespace - Class in net.imagej.ops.threshold
The threshold namespace contains operations related to binary thresholding.
ThresholdNamespace() - Constructor for class net.imagej.ops.threshold.ThresholdNamespace
 
Thresholds - Class in net.imagej.ops.threshold
Utility methods used by the various threshold methods.
TIME - Static variable in class net.imagej.axis.Axes
Identifies the Time dimensional type, representing a dimension consisting of time points.
timestamp - Variable in class net.imagej.updater.AbstractUploader
 
timestamp - Variable in class net.imagej.updater.Checksummer.StringAndFile
 
timestamp - Variable in class net.imagej.updater.Dependency
 
timestamp - Variable in class net.imagej.updater.FileObject.Version
 
timestamp(long) - Static method in class net.imagej.updater.util.UpdaterUtil
 
timestamp(Calendar) - Static method in class net.imagej.updater.util.UpdaterUtil
 
timestamp2millis(long) - Static method in class net.imagej.updater.util.UpdaterUtil
 
timestamp2millis(String) - Static method in class net.imagej.updater.util.UpdaterUtil
 
timestampChanged(FileObject) - Method in class net.imagej.updater.Conflicts
 
timestampedId(int) - Static method in class net.imagej.server.Utils
Generates a (8+n) bit alphanumeric lowercase random ID.
timestampObsolete - Variable in class net.imagej.updater.FileObject.Version
 
timestampString() - Static method in class net.imagej.server.Utils
Converts the current time in milliseconds to an 8-digit lowercase alphanumeric String.
title() - Method in class net.imagej.ops.search.OpSearcher
 
title - Variable in class net.imagej.ui.swing.updater.DiffFile
 
title(String) - Method in class net.imagej.ui.swing.updater.FileDetails
 
to1D(long[], long[]) - Static method in class net.imagej.plugins.commands.restructure.ColorTableRemapper
 
toArray() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
toArray(T[]) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
toArray() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
toArray(A[]) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
toArray() - Method in class net.imagej.legacy.convert.TableListWrapper
 
toArray(T[]) - Method in class net.imagej.legacy.convert.TableListWrapper
 
toArray() - Method in class net.imagej.omero.LazyTableList
 
toArray(T[]) - Method in class net.imagej.omero.LazyTableList
 
toArray() - Method in class net.imagej.omero.legacy.LazyOverlay
 
toBezierPath(PathIterator) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
toByteArray(boolean) - Method in class net.imagej.updater.XMLFileWriter
 
toCamelCase(String) - Static method in class net.imagej.updater.util.UpdaterUtil
CamelCases a String.
toCompressedByteArray(boolean) - Method in class net.imagej.updater.XMLFileWriter
 
toDebug() - Method in class net.imagej.updater.FileObject
 
toggle(ImageDisplay) - Method in interface net.imagej.animation.AnimationService
Toggles animation for the given ImageDisplay.
toggle(ImageDisplay) - Method in class net.imagej.animation.DefaultAnimationService
 
toggleDetails() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
toggleEasyMode() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
toggleLegacyMode(boolean) - Method in class net.imagej.legacy.LegacyImageMap
 
toggleLegacyMode(boolean) - Method in class net.imagej.legacy.LegacyService
Switches to/from running legacy ImageJ 1.x mode.
toggleLegacyMode(boolean, boolean) - Method in class net.imagej.legacy.LegacyService
 
toHex(byte[]) - Static method in class net.imagej.updater.util.UpdaterUtil
 
toImageJ(client, RType, Class<?>) - Method in class net.imagej.omero.DefaultOMEROService
 
toImageJ(client, RType, Class<?>) - Method in interface net.imagej.omero.OMEROService
Converts an OMERO parameter value to an ImageJ value of the given type.
toInput(double) - Method in interface net.imagej.units.Calibrator
Map an output double value to an input double value.
toInput(double) - Method in class net.imagej.units.LinearCalibrator
 
toInstall() - Method in class net.imagej.updater.FileObject
 
toInstall() - Method in class net.imagej.updater.FilesCollection
 
toInstallOrUpdate() - Method in class net.imagej.updater.FilesCollection
 
toMask(Object) - Method in class net.imagej.roi.DefaultROIService
 
toMask(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a Mask
toMaskInterval(Object) - Method in class net.imagej.roi.DefaultROIService
 
toMaskInterval(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a MaskInterval
toMaskPredicate(Object) - Method in class net.imagej.roi.DefaultROIService
 
toMaskPredicate(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a MaskPredicate.
toND(long[], long, long[]) - Static method in class net.imagej.plugins.commands.restructure.ColorTableRemapper
 
ToolDelegator - Class in net.imagej.ui.swing.overlay
TODO
ToolDelegator() - Constructor for class net.imagej.ui.swing.overlay.ToolDelegator
 
toOMERO(Object) - Method in class net.imagej.omero.DefaultOMEROService
 
toOMERO(client, Object) - Method in class net.imagej.omero.DefaultOMEROService
 
toOMERO(Object) - Method in interface net.imagej.omero.OMEROService
Converts an ImageJ parameter value to an OMERO parameter value.
toOMERO(client, Object) - Method in interface net.imagej.omero.OMEROService
Converts an ImageJ parameter value to an OMERO parameter value.
toOutput(double) - Method in interface net.imagej.units.Calibrator
Map an input double value to an output double value.
toOutput(double) - Method in class net.imagej.units.LinearCalibrator
 
topHat(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
topHat(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
ToplevelImageJApp - Class in net.imagej.app
An extension of ImageJApp that provides the versions of both ImageJ2 and the original ImageJ, when ToplevelImageJApp.getVersion() is called.
ToplevelImageJApp() - Constructor for class net.imagej.app.ToplevelImageJApp
 
topology() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "topology" namespace
TopologyNamespace - Class in net.imagej.ops.topology
The topology namespace contains operations for calculating topology characteristics
TopologyNamespace() - Constructor for class net.imagej.ops.topology.TopologyNamespace
 
toRandomAccessibleInterval(Object) - Method in class net.imagej.roi.DefaultROIService
 
toRandomAccessibleInterval(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a RandomAccessibleInterval<BoolType>; otherwise, an exception is thrown.
toRandomAcessible(Object) - Method in class net.imagej.roi.DefaultROIService
 
toRandomAcessible(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a RandomAccessible<BoolType>; otherwise, an exception is thrown.
toRealMask(Object) - Method in class net.imagej.roi.DefaultROIService
 
toRealMask(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a RealMask
toRealMaskRealInterval(Object) - Method in class net.imagej.roi.DefaultROIService
 
toRealMaskRealInterval(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a RealMaskRealInterval
toRealRandomAccessible(Object) - Method in class net.imagej.roi.DefaultROIService
 
toRealRandomAccessible(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a RealRandomAccessible.
toRealRandomAccessibleRealInterval(Object) - Method in class net.imagej.roi.DefaultROIService
 
toRealRandomAccessibleRealInterval(Object) - Method in interface net.imagej.roi.ROIService
Attempts to convert the given Object to a RealRandomAccessibleRealInterval.
toRemove() - Method in class net.imagej.updater.FilesCollection
 
toShape(F) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
Converts a figure into an AWT Shape.
toShape(AngleJHotDrawAdapter.AngleFigure) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
toShape(ImageFigure) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
toShape(EllipseFigure) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
toShape(GeneralPathFigure) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
toShape(LineFigure) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
toShape(PointFigure) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
toShape(BezierFigure) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
toShape(BezierFigure) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
toShape(RectangleFigure) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
toShape(ThresholdFigure) - Method in class net.imagej.ui.swing.overlay.ThresholdJHotDrawAdapter
 
toString() - Method in class net.imagej.AbstractData
 
toString() - Method in class net.imagej.axis.DefaultAxisType
 
toString() - Method in enum net.imagej.display.ColorMode
 
toString() - Method in class net.imagej.display.DefaultImageDisplay
 
toString() - Method in class net.imagej.display.event.AxisEvent
 
toString() - Method in class net.imagej.display.event.CanvasEvent
 
toString() - Method in class net.imagej.display.event.DataViewEvent
 
toString() - Method in class net.imagej.display.event.DelayedPositionEvent
 
toString() - Method in class net.imagej.display.event.MouseCursorEvent
 
toString() - Method in class net.imagej.display.event.PanZoomEvent
 
toString() - Method in class net.imagej.display.event.ViewportResizeEvent
 
toString() - Method in class net.imagej.display.OverlayInfo
 
toString() - Method in class net.imagej.Extents
 
toString() - Method in class net.imagej.launcher.ClassLoaderPlus
 
toString() - Method in class net.imagej.legacy.convert.ImageTitleToImagePlusConverter.ImageTitle
 
toString() - Method in class net.imagej.legacy.convert.StringToImagePlusConverter.ImageTitle
 
toString() - Method in class net.imagej.omero.legacy.LazyOverlay
 
toString() - Method in class net.imagej.omero.roi.ellipse.AbstractOMEROEllipse
 
toString() - Method in class net.imagej.omero.roi.line.DefaultOMEROLine
 
toString() - Method in class net.imagej.omero.roi.mask.DefaultOMEROMask
 
toString() - Method in class net.imagej.omero.roi.point.DefaultOMEROPoint
 
toString() - Method in class net.imagej.omero.roi.polyshape.AbstractOMEROPolygon
 
toString() - Method in class net.imagej.omero.roi.polyshape.DefaultOMEROPolyline
 
toString() - Method in class net.imagej.omero.roi.rectangle.AbstractOMERORectangle
 
toString() - Method in class net.imagej.ops.features.zernike.helper.Polynom
provide a String representation of this polynom.
toString() - Method in class net.imagej.ops.OpCandidate
 
toString() - Method in class net.imagej.ops.OpInfo
 
toString() - Method in class net.imagej.ops.OpRef
 
toString() - Method in class net.imagej.Position
 
toString() - Method in class net.imagej.server.mixins.Mixins.OutOfBoundsFactoryMixIn
 
toString() - Method in class net.imagej.server.mixins.Mixins.RealTypeMixIn
 
toString() - Method in class net.imagej.server.mixins.Mixins.ToStringMixIn
 
toString() - Method in class net.imagej.server.mixins.Mixins.TypeMixIn
 
toString() - Method in class net.imagej.tensorflow.TensorFlowVersion
 
toString() - Method in class net.imagej.types.PreciseFixedFloatType
 
toString() - Method in class net.imagej.types.UnboundedIntegerType
 
toString() - Method in enum net.imagej.ui.swing.updater.ViewOptions.Option
 
toString() - Method in class net.imagej.updater.action.InstallOrUpdate
 
toString() - Method in class net.imagej.updater.action.KeepAsIs
 
toString() - Method in class net.imagej.updater.action.Remove
 
toString() - Method in class net.imagej.updater.action.Uninstall
 
toString() - Method in class net.imagej.updater.action.Upload
 
toString() - Method in class net.imagej.updater.Checksummer.StringAndFile
 
toString() - Method in enum net.imagej.updater.Conflicts.Conflict.Severity
 
toString() - Method in class net.imagej.updater.Conflicts.Conflict
 
toString() - Method in class net.imagej.updater.Dependency
 
toString() - Method in enum net.imagej.updater.Diff.Mode
 
toString() - Method in enum net.imagej.updater.FileObject.Action
 
toString() - Method in class net.imagej.updater.FileObject
 
toString() - Method in class net.imagej.updater.FileObject.Version
 
toString() - Method in class net.imagej.updater.FilesCollection
 
toString() - Method in class net.imagej.updater.FilesUploader.DbXmlFile
 
toString() - Method in class net.imagej.updater.UpdateSite
 
toString() - Method in class net.imagej.updater.UploadableFile
 
toString() - Method in class net.imagej.updater.URLChange
 
toString() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
 
toString() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Field
 
toString() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Interface
 
toString() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
toString(ByteCodeAnalyzer.Attribute[]) - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
ToStringMixIn() - Constructor for class net.imagej.server.mixins.Mixins.ToStringMixIn
 
total - Variable in class net.imagej.updater.AbstractUploader
 
total - Variable in class net.imagej.updater.util.Downloader
 
touch(File) - Static method in class net.imagej.updater.FileObject
 
toUninstall() - Method in class net.imagej.updater.FileObject
 
toUninstall() - Method in class net.imagej.updater.FilesCollection
 
toUpdate() - Method in class net.imagej.updater.FileObject
 
toUpdate() - Method in class net.imagej.updater.FilesCollection
 
toUpload() - Method in class net.imagej.updater.FileObject
 
toUpload() - Method in class net.imagej.updater.FilesCollection
 
toUpload(boolean) - Method in class net.imagej.updater.FilesCollection
 
toUpload(String) - Method in class net.imagej.updater.FilesCollection
 
toUploadOrRemove() - Method in class net.imagej.updater.FilesCollection
 
trackEnd(Point, Point, int) - Method in class net.imagej.ui.swing.overlay.PolygonNodeHandle
 
transform(AffineGet) - Method in class net.imagej.omero.legacy.text.OMEROText
transform(RealTransform) - Method in class net.imagej.omero.legacy.text.OMEROText
transform(AffineGet) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
transform(RealTransform) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
transform() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "transform" namespace.
transform(ClassLoader, String, Class<?>, ProtectionDomain, byte[]) - Method in class net.imagej.patcher.JavaAgent
 
transform(AffineTransform) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
transform(AffineTransform) - Method in class net.imagej.ui.swing.overlay.PointFigure
Moves the Figure to a new location.
transform(AffineTransform) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
TransformedOMERORealMaskRealInterval<S extends ShapeData> - Class in net.imagej.omero.roi.transform
TransformedOMERORealMaskRealInterval(OMERORealMaskRealInterval<S>, RealInterval, Operators.RealTransformMaskOperator) - Constructor for class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealInterval
 
TransformedOMERORealMaskRealIntervalToShapeData - Class in net.imagej.omero.roi.transform
TransformedOMERORealMaskRealIntervalToShapeData() - Constructor for class net.imagej.omero.roi.transform.TransformedOMERORealMaskRealIntervalToShapeData
 
TransformNamespace - Class in net.imagej.ops.transform
All method descriptions are from Views.
TransformNamespace() - Constructor for class net.imagej.ops.transform.TransformNamespace
 
translate(int, int) - Method in class net.imagej.omero.legacy.LazyOverlay
 
translate(double, double) - Method in class net.imagej.omero.legacy.LazyOverlay
 
TranslateImage<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib
Translates an existing image by a set of possibly nonintegral deltas.
TranslateImage() - Constructor for class net.imagej.plugins.commands.imglib.TranslateImage
 
translateView(RandomAccessible<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace
Translate the source view by the given translation vector.
translateView(RandomAccessibleInterval<T>, long...) - Method in class net.imagej.ops.transform.TransformNamespace
Translate the source view by the given translation vector, preserving interval bounds.
transpose(Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
Traverser(RandomAccessibleInterval<B>) - Constructor for class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
TreeNodeMaskPredicateToROIData - Class in net.imagej.omero.roi
Converts a TreeNode<MaskPredicate<?>> to a ROIData.
TreeNodeMaskPredicateToROIData() - Constructor for class net.imagej.omero.roi.TreeNodeMaskPredicateToROIData
 
TreeNodePointRoiWrapperToROIData - Class in net.imagej.omero.legacy.convert
Converts a PointRoiWrapper to a ROIData.
TreeNodePointRoiWrapperToROIData() - Constructor for class net.imagej.omero.legacy.convert.TreeNodePointRoiWrapperToROIData
 
TreeNodeRAIToROIData - Class in net.imagej.omero.roi
Converts a TreeNode<RandomAccessibleInterval<?>> to a ROIData.
TreeNodeRAIToROIData() - Constructor for class net.imagej.omero.roi.TreeNodeRAIToROIData
 
TreeNodeRPCToROIData - Class in net.imagej.omero.roi.point
TreeNodeRPCToROIData() - Constructor for class net.imagej.omero.roi.point.TreeNodeRPCToROIData
 
Triangle - Interface in net.imagej.mesh
One triangle of a Triangles collection.
Triangle() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Triangle
 
triangle(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
triangle(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
triangle(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
triangle(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
triangle(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
triangle(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
triangles() - Method in interface net.imagej.mesh.Mesh
The mesh's collection of triangles.
triangles() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh
 
Triangles() - Constructor for class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
triangles() - Method in class net.imagej.mesh.naive.NaiveFloatMesh
 
Triangles() - Constructor for class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
triangles() - Method in class net.imagej.mesh.nio.BufferMesh
 
Triangles(IntBuffer, FloatBuffer) - Constructor for class net.imagej.mesh.nio.BufferMesh.Triangles
 
Triangles - Interface in net.imagej.mesh
Collection of triangles for a Mesh.
TriangularFacet - Class in net.imagej.ops.geom.geom3d.mesh
This is the triangle implementation of Facet Interface.
TriangularFacet() - Constructor for class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
Creates a new empty facet.
TriangularFacet(Vertex, Vertex, Vertex) - Constructor for class net.imagej.ops.geom.geom3d.mesh.TriangularFacet
Creates a new facet of three vertices.
triedLoading() - Method in class net.imagej.tensorflow.TensorFlowLibraryStatus
 
tryLoadingCollection() - Method in class net.imagej.updater.FilesCollection
 
tryToGuessPlatform(FileObject) - Method in class net.imagej.updater.Checksummer
 
tubeness(IterableInterval<DoubleType>, RandomAccessibleInterval<T>, double, double...) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "tubeness" filter operation on the given arguments.
tubeness(RandomAccessibleInterval<T>, double, double...) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "tubeness" filter operation on the given arguments.
type() - Method in class net.imagej.axis.DefaultTypedAxis
 
type() - Method in interface net.imagej.axis.TypedAxis
Gets the type of the axis.
type(T) - Method in class net.imagej.ops.copy.CopyNamespace
 
type(T, T) - Method in class net.imagej.ops.copy.CopyNamespace
 
typeChange() - Method in interface net.imagej.Dataset
TODO
typeChange() - Method in class net.imagej.DefaultDataset
 
TypeChanger<U extends RealType<U>,V extends RealType<V> & NativeType<V>> - Class in net.imagej.plugins.commands.typechange
TypeChanger changes the type of the data in a Dataset.
TypeChanger() - Constructor for class net.imagej.plugins.commands.typechange.TypeChanger
 
typed(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
 
typed(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService
Given an ImgPlus of unknown type this returns a typed ImgPlus of type Type.
TypedAxis - Interface in net.imagej.axis
An axis with an associated AxisType.
typedImg(T) - Method in interface net.imagej.Dataset
TODO
typedParse(RandomAccessInputStream, OMEROFormat.Metadata, SCIFIOConfig) - Method in class net.imagej.omero.OMEROFormat.Parser
 
TypedRealInterval<A extends TypedAxis> - Interface in net.imagej.interval
TypedSpace<A extends TypedAxis> - Interface in net.imagej.space
A Euclidean space with typed dimensional axes.
TypeMixIn() - Constructor for class net.imagej.server.mixins.Mixins.TypeMixIn
 
Types - Class in net.imagej.ops.convert
Utility methods for converting between primitive types.
types(Type...) - Static method in class net.imagej.ops.OpRef
 
typesMatch(OpCandidate) - Method in class net.imagej.ops.DefaultOpMatchingService
 
typesMatch(OpCandidate) - Method in interface net.imagej.ops.OpMatchingService
Checks that each parameter is type-compatible with its corresponding argument.
typesMatch(Class<?>) - Method in class net.imagej.ops.OpRef
Determines whether the op's required types match the given class.

U

u(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
u() - Method in interface net.imagej.mesh.Vertex
U value of vertex texture coordinate, as a double.
u(long) - Method in interface net.imagej.mesh.Vertices
U value of vertex texture coordinate, as a double.
UCViaUC<I extends DI,O extends DO,DI,DO> - Class in net.imagej.ops.special.chain
Base class for UnaryComputerOps that delegate to other UnaryComputerOps.
UCViaUC() - Constructor for class net.imagej.ops.special.chain.UCViaUC
 
UCViaUCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for UnaryComputerOps that delegate to other UnaryComputerOps with all matching types (input same as output).
UCViaUCAllSame() - Constructor for class net.imagej.ops.special.chain.UCViaUCAllSame
 
UCViaUCSameIO<I,O> - Class in net.imagej.ops.special.chain
Base class for UnaryComputerOps that delegate to other UnaryComputerOps with the same input and output types.
UCViaUCSameIO() - Constructor for class net.imagej.ops.special.chain.UCViaUCSameIO
 
uf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
uf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
uf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
uf() - Method in interface net.imagej.mesh.Vertex
U value of vertex texture coordinate, as a float.
uf(long) - Method in interface net.imagej.mesh.Vertices
U value of vertex texture coordinate, as a float.
UFViaUC<I extends DI,O extends DO,DI,DO> - Class in net.imagej.ops.special.chain
Base class for UnaryFunctionOps that delegate to UnaryComputerOps.
UFViaUC() - Constructor for class net.imagej.ops.special.chain.UFViaUC
 
UFViaUCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for UnaryFunctionOps that delegate to UnaryComputerOps with all matching types (input same as output).
UFViaUCAllSame() - Constructor for class net.imagej.ops.special.chain.UFViaUCAllSame
 
UFViaUCSameIO<I,O> - Class in net.imagej.ops.special.chain
Base class for UnaryFunctionOps that delegate to UnaryComputerOps with the same input and output types.
UFViaUCSameIO() - Constructor for class net.imagej.ops.special.chain.UFViaUCSameIO
 
UFViaUF<I extends DI,O,DI,DO extends O> - Class in net.imagej.ops.special.chain
Base class for UnaryFunctionOps that delegate to other UnaryFunctionOps.
UFViaUF() - Constructor for class net.imagej.ops.special.chain.UFViaUF
 
UFViaUFAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for UnaryFunctionOps that delegate to other UnaryFunctionOps with all matching types (input same as output).
UFViaUFAllSame() - Constructor for class net.imagej.ops.special.chain.UFViaUFAllSame
 
UFViaUFSameIO<I,O> - Class in net.imagej.ops.special.chain
Base class for UnaryFunctionOps that delegate to other UnaryFunctionOps with the same input and output types.
UFViaUFSameIO() - Constructor for class net.imagej.ops.special.chain.UFViaUFSameIO
 
UHCFViaUC<I extends DI,O extends DO,DI,DO> - Class in net.imagej.ops.special.chain
Base class for UnaryHybridCFs that delegate to UnaryComputerOps.
UHCFViaUC() - Constructor for class net.imagej.ops.special.chain.UHCFViaUC
 
UHCFViaUCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for UnaryHybridCFs that delegate to UnaryComputerOps with all matching types (input same as output).
UHCFViaUCAllSame() - Constructor for class net.imagej.ops.special.chain.UHCFViaUCAllSame
 
UHCFViaUCSameIO<I,O> - Class in net.imagej.ops.special.chain
Base class for UnaryHybridCFs that delegate to UnaryComputerOps with the same input and output types.
UHCFViaUCSameIO() - Constructor for class net.imagej.ops.special.chain.UHCFViaUCSameIO
 
UHCFViaUHCF<I extends DI,O,DI> - Class in net.imagej.ops.special.chain
Base class for UnaryHybridCFs that delegate to other UnaryHybridCFs.
UHCFViaUHCF() - Constructor for class net.imagej.ops.special.chain.UHCFViaUHCF
 
UHCFViaUHCFAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for UnaryHybridCFs that delegate to other UnaryHybridCFs with all matching types (input same as output).
UHCFViaUHCFAllSame() - Constructor for class net.imagej.ops.special.chain.UHCFViaUHCFAllSame
 
UHCFViaUHCFSameIO<I,O> - Class in net.imagej.ops.special.chain
Base class for UnaryHybridCFs that delegate to other UnaryHybridCFs with the same input and output types.
UHCFViaUHCFSameIO() - Constructor for class net.imagej.ops.special.chain.UHCFViaUHCFSameIO
 
ui - Static variable in class net.imagej.updater.util.UpdaterUserInterface
 
Uint12() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint12
 
uint12(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint12(Img<Unsigned12BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint12(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint12(Unsigned12BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint12(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint12(Unsigned12BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint12(long) - Static method in class net.imagej.ops.convert.Types
 
uint12(double) - Static method in class net.imagej.ops.convert.Types
 
uint12(Number) - Static method in class net.imagej.ops.convert.Types
 
uint12(boolean) - Static method in class net.imagej.ops.convert.Types
 
Uint128() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint128
 
uint128(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint128(Img<Unsigned128BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint128(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint128(Unsigned128BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint128(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint128(Unsigned128BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint128(long) - Static method in class net.imagej.ops.convert.Types
 
uint128(double) - Static method in class net.imagej.ops.convert.Types
 
uint128(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
uint128(boolean) - Static method in class net.imagej.ops.convert.Types
 
Uint16() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint16
 
uint16(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint16(Img<UnsignedShortType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint16(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint16(UnsignedShortType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint16(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint16(UnsignedShortType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint16(long) - Static method in class net.imagej.ops.convert.Types
 
uint16(double) - Static method in class net.imagej.ops.convert.Types
 
uint16(Number) - Static method in class net.imagej.ops.convert.Types
 
uint16(boolean) - Static method in class net.imagej.ops.convert.Types
 
Uint2() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint2
 
uint2(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint2(Img<Unsigned2BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint2(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint2(Unsigned2BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint2(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint2(Unsigned2BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint2(long) - Static method in class net.imagej.ops.convert.Types
 
uint2(double) - Static method in class net.imagej.ops.convert.Types
 
uint2(Number) - Static method in class net.imagej.ops.convert.Types
 
uint2(boolean) - Static method in class net.imagej.ops.convert.Types
 
Uint32() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint32
 
uint32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint32(Img<UnsignedIntType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint32(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint32(UnsignedIntType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint32(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint32(UnsignedIntType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint32(long) - Static method in class net.imagej.ops.convert.Types
 
uint32(double) - Static method in class net.imagej.ops.convert.Types
 
uint32(Number) - Static method in class net.imagej.ops.convert.Types
 
uint32(boolean) - Static method in class net.imagej.ops.convert.Types
 
Uint4() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint4
 
uint4(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint4(Img<Unsigned4BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint4(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint4(Unsigned4BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint4(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint4(Unsigned4BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint4(long) - Static method in class net.imagej.ops.convert.Types
 
uint4(double) - Static method in class net.imagej.ops.convert.Types
 
uint4(Number) - Static method in class net.imagej.ops.convert.Types
 
uint4(boolean) - Static method in class net.imagej.ops.convert.Types
 
Uint64() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint64
 
uint64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint64(Img<UnsignedLongType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint64(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint64(UnsignedLongType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint64(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint64(UnsignedLongType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint64(long) - Static method in class net.imagej.ops.convert.Types
 
uint64(double) - Static method in class net.imagej.ops.convert.Types
 
uint64(Number) - Static method in class net.imagej.ops.convert.Types
 
uint64(boolean) - Static method in class net.imagej.ops.convert.Types
 
uint64Uint128(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
Uint8() - Constructor for class net.imagej.ops.convert.ConvertImages.Uint8
 
uint8(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint8(Img<UnsignedByteType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint8(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint8(UnsignedByteType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint8(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint8(UnsignedByteType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
uint8(long) - Static method in class net.imagej.ops.convert.Types
 
uint8(double) - Static method in class net.imagej.ops.convert.Types
 
uint8(Number) - Static method in class net.imagej.ops.convert.Types
 
uint8(boolean) - Static method in class net.imagej.ops.convert.Types
 
UIOViaUI<A extends DO,DI,DO extends DI> - Class in net.imagej.ops.special.chain
Base class for UnaryInplaceOnlyOps that delegate to UnaryInplaceOps.
UIOViaUI() - Constructor for class net.imagej.ops.special.chain.UIOViaUI
 
UIOViaUISame<A> - Class in net.imagej.ops.special.chain
Base class for UnaryInplaceOnlyOps that delegate to UnaryInplaceOps with all matching types (input same as output).
UIOViaUISame() - Constructor for class net.imagej.ops.special.chain.UIOViaUISame
 
uiService() - Method in class net.imagej.legacy.LegacyService
 
ulp(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Ulp() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Ulp
 
unary(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best UnaryComputerOp implementation for the given types and arguments, populating its inputs.
unary(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best UnaryComputerOp implementation for the given types and arguments, populating its inputs.
unary(OpEnvironment, Class<? extends Op>, O, I, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best UnaryComputerOp implementation for the given types and arguments, populating its inputs.
unary(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.function.Functions
Gets the best UnaryFunctionOp implementation for the given types and arguments, populating its inputs.
unary(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.function.Functions
Gets the best UnaryFunctionOp implementation for the given types and arguments, populating its inputs.
unary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best UnaryInplaceOp implementation for the given types and arguments, populating its inputs.
unary(OpEnvironment, Class<? extends Op>, O, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best UnaryInplaceOp implementation for the given types and arguments, populating its inputs.
unaryCF(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCF implementation for the given types and arguments, populating its inputs.
unaryCF(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCF implementation for the given types and arguments, populating its inputs.
unaryCF(OpEnvironment, Class<? extends Op>, O, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCF implementation for the given types and arguments, populating its inputs.
unaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCFI implementation for the given types and arguments, populating its inputs.
unaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCFI implementation for the given types and arguments, populating its inputs.
unaryCFI(OpEnvironment, Class<? extends Op>, O, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCFI implementation for the given types and arguments, populating its inputs.
unaryCI(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCI implementation for the given types and arguments, populating its inputs.
unaryCI(OpEnvironment, Class<? extends Op>, Class<O>, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCI implementation for the given types and arguments, populating its inputs.
unaryCI(OpEnvironment, Class<? extends Op>, O, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best UnaryHybridCI implementation for the given types and arguments, populating its inputs.
unaryComputer(I, O) - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
 
unaryComputer(O) - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
 
unaryComputer(V) - Method in class net.imagej.ops.filter.max.DefaultMaxFilter
 
unaryComputer(V) - Method in class net.imagej.ops.filter.mean.DefaultMeanFilter
 
unaryComputer(V) - Method in class net.imagej.ops.filter.median.DefaultMedianFilter
 
unaryComputer(V) - Method in class net.imagej.ops.filter.min.DefaultMinFilter
 
unaryComputer(T, V) - Method in class net.imagej.ops.filter.sigma.DefaultSigmaFilter
 
unaryComputer(V) - Method in class net.imagej.ops.filter.variance.DefaultVarianceFilter
 
unaryComputer() - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalHuangThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIJ1Threshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIntermodesThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalIsoDataThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalLiThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxEntropyThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinErrorThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMinimumThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalMomentsThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalOtsuThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalPercentileThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalRosinThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalShanbhagThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalTriangleThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.ApplyThresholdMethodLocal.LocalYenThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localBernsen.LocalBernsenThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localContrast.LocalContrastThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localMean.LocalMeanThreshold
 
unaryComputer() - Method in class net.imagej.ops.threshold.localMean.LocalMeanThresholdIntegral
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localMedian.LocalMedianThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localMidGrey.LocalMidGreyThreshold
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThreshold
 
unaryComputer() - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThresholdIntegral
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThreshold
 
unaryComputer() - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThresholdIntegral
 
unaryComputer(T, BitType) - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold
 
unaryComputer() - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThresholdIntegral
 
UnaryComputerOp<I,O> - Interface in net.imagej.ops.special.computer
A unary computer calculates a result from the given input, storing it into the specified output reference.
UnaryFunctionOp<I,O> - Interface in net.imagej.ops.special.function
A unary function calculates a result from the given input, returning it as a new object.
UnaryHybridCF<I,O> - Interface in net.imagej.ops.special.hybrid
A hybrid unary operation which can be used as a UnaryComputerOp or UnaryFunctionOp.
UnaryHybridCFI<I,O extends I> - Interface in net.imagej.ops.special.hybrid
A hybrid unary operation which can be used as a UnaryComputerOp, UnaryFunctionOp or UnaryInplaceOp.
UnaryHybridCI<I,O extends I> - Interface in net.imagej.ops.special.hybrid
A hybrid unary operation which can be used as a UnaryComputerOp or UnaryInplaceOp.
UnaryInplaceOnlyOp<A> - Interface in net.imagej.ops.special.inplace
A UnaryInplaceOp which is not a hybrid.
UnaryInplaceOp<I,O extends I> - Interface in net.imagej.ops.special.inplace
A unary inplace operation is an op which mutates a parameter.
UnaryInput<I> - Interface in net.imagej.ops.special
Interface for objects with a typed input parameter.
UnaryOp<I,O> - Interface in net.imagej.ops.special
A unary operation computes a result from a given input.
UnaryOutputFactory<I,O> - Interface in net.imagej.ops.special
Factory which creates a typed output object given a typed input.
UnaryRealTypeMath - Class in net.imagej.ops.math
Ops of the math namespace which operate on RealTypes.
UnaryRealTypeMath.Abs<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the absolute value of the real component of an input real number.
UnaryRealTypeMath.Arccos<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse cosine of the real component of an input real number.
UnaryRealTypeMath.Arccosh<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse hyperbolic cosine of the real component of an input real number.
UnaryRealTypeMath.Arccot<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse cotangent of the real component of an input real number.
UnaryRealTypeMath.Arccoth<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse hyperbolic cotangent of the real component of an input real number.
UnaryRealTypeMath.Arccsc<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse cosecant of the real component of an input real number.
UnaryRealTypeMath.Arccsch<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse hyperbolic cosecant of the real component of an input real number.
UnaryRealTypeMath.Arcsec<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse secant of the real component of an input real number.
UnaryRealTypeMath.Arcsech<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse hyperbolic secant of the real component of an input real number.
UnaryRealTypeMath.Arcsin<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse sine of the real component of an input real number.
UnaryRealTypeMath.Arcsinh<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse hyperbolic sine of the real component of an input real number.
UnaryRealTypeMath.Arctan<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse tangent of the real component of an input real number.
UnaryRealTypeMath.Arctanh<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inverse hyperbolic tangent of the real component of an input real number.
UnaryRealTypeMath.Ceil<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the ceiling of the real component of an input real number.
UnaryRealTypeMath.Cos<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the cosine of the real component of an input real number.
UnaryRealTypeMath.Cosh<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the hyperbolic cosine of the real component of an input real number.
UnaryRealTypeMath.Cot<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the cotangent of the real component of an input real number.
UnaryRealTypeMath.Coth<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the hyperbolic cotangent of the real component of an input real number.
UnaryRealTypeMath.Csc<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the cosecant of the real component of an input real number.
UnaryRealTypeMath.Csch<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the hyperbolic cosecant of the real component of an input real number.
UnaryRealTypeMath.CubeRoot<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the cube root of the real component of an input real number.
UnaryRealTypeMath.Exp<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the exponentiation of the real component of an input real number.
UnaryRealTypeMath.ExpMinusOne<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to e^x - 1.
UnaryRealTypeMath.Floor<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the floor of the real component of an input real number.
UnaryRealTypeMath.GammaConstant<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the gamma value of the real component of an input real number.
UnaryRealTypeMath.Invert<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the inversion of the real component of an input real number about a range.
UnaryRealTypeMath.Log<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the natural log of the real component of an input real number.
UnaryRealTypeMath.Log10<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the 10-based log of the real component of an input real number.
UnaryRealTypeMath.Log2<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the base 2 log of the real component of an input real number.
UnaryRealTypeMath.LogOnePlusX<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the natural logarithm of the sum of the argument and 1.
UnaryRealTypeMath.MaxConstant<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the real component of an input real number unless it exceeds a maximum value.
UnaryRealTypeMath.MinConstant<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the real component of an input real number unless it is less then a minimum value.
UnaryRealTypeMath.NearestInt<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the nearest integral value of the real component of an input real number.
UnaryRealTypeMath.Negate<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the negation of the real component of an input real number.
UnaryRealTypeMath.PowerConstant<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the raising of the real component of an input real number to a constant value.
UnaryRealTypeMath.RandomGaussian<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to a random value using a gaussian distribution.
UnaryRealTypeMath.RandomUniform<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to a random value between 0 and (input real number).
UnaryRealTypeMath.Reciprocal<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the reciprocal of the real component of an input real number.
UnaryRealTypeMath.Round<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the rounding of the real component of an input real number.
UnaryRealTypeMath.Sec<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the secant of the real component of an input real number.
UnaryRealTypeMath.Sech<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the hyperbolic secant of the real component of an input real number.
UnaryRealTypeMath.Signum<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the signum of the real component of an input real number.
UnaryRealTypeMath.Sin<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the sine of the real component of an input real number.
UnaryRealTypeMath.Sinc<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the sinc value of the real component of an input real number.
UnaryRealTypeMath.SincPi<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the sinc (pi version) of the real component of an input real number.
UnaryRealTypeMath.Sinh<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the hyperbolic sine of the real component of an input real number.
UnaryRealTypeMath.Sqr<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the square of the real component of an input real number.
UnaryRealTypeMath.Sqrt<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the square root of the real component of an input real number.
UnaryRealTypeMath.Step<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets an output real number to 0 if the input real number is less than 0.
UnaryRealTypeMath.Tan<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the tangent of the real component of an input real number.
UnaryRealTypeMath.Tanh<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the hyperbolic tangent of the real component of an input real number.
UnaryRealTypeMath.Ulp<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the size of the ulp of an input real number.
UnboundedIntegerType - Class in net.imagej.types
A BigInteger backed integral type (unlimited range).
UnboundedIntegerType() - Constructor for class net.imagej.types.UnboundedIntegerType
 
UnboundedIntegerType(UnboundedIntegerType) - Constructor for class net.imagej.types.UnboundedIntegerType
 
UnboundedIntegerType(long) - Constructor for class net.imagej.types.UnboundedIntegerType
 
UnboundedIntegerType(BigInteger) - Constructor for class net.imagej.types.UnboundedIntegerType
 
undoableEditHappened(UndoableEditEvent) - Method in class net.imagej.ui.swing.updater.FileDetails
 
unGZip(String, File, String, LogService, StatusService) - Static method in class net.imagej.tensorflow.util.UnpackUtil
 
uninstall(RSyntaxTextArea) - Method in class net.imagej.legacy.plugin.MacroLanguageSupportPlugin
 
Uninstall - Class in net.imagej.updater.action
The uninstall action.
Uninstall() - Constructor for class net.imagej.updater.action.Uninstall
 
uninstalled() - Method in class net.imagej.updater.FilesCollection
 
unit() - Method in class net.imagej.axis.AbstractCalibratedAxis
 
unit() - Method in interface net.imagej.axis.CalibratedAxis
Gets the dimension's unit.
unit(UnitsLength) - Static method in class net.imagej.omero.OMEROUtils
Converts a UnitsLength object into a Unit<Length>.
unit(UnitsTime) - Static method in class net.imagej.omero.OMEROUtils
Converts a UnitsTime object into a Unit<Time>.
units - Static variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
UnitService - Interface in net.imagej.units
Service for defining units and making unit conversions.
unknown() - Static method in class net.imagej.axis.Axes
Gets an "unknown" axis type.
UNKNOWN_LABEL - Static variable in class net.imagej.axis.Axes
Label for unknown axis types, which are returned by Axes.unknown().
UnmodifiablePolygonRoiWrapper - Class in net.imagej.legacy.convert.roi.polygon2d
Wraps an ImageJ 1.x PolygonRoi of type Roi.FREEROI or Roi.TRACED_ROI as an unmodifiable ImgLib2 Polygon2D.
UnmodifiablePolygonRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper
Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polygon2D.
UnmodifiablePolylineRoiWrapper - Class in net.imagej.legacy.convert.roi.polyline
Wraps an ImageJ 1.x PolygonRoi of type Roi.FREELINE and Roi.ANGLE as an unmodifiable ImgLib2 Polyline.
UnmodifiablePolylineRoiWrapper(PolygonRoi) - Constructor for class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper
Wraps an ImageJ 1.x PolygonRoi as an ImgLib2 Polyline.
UnmodifiablePolylineRoiWrapperToPolylineData() - Constructor for class net.imagej.omero.legacy.convert.IJRoiWrapperToShapeData.UnmodifiablePolylineRoiWrapperToPolylineData
 
UnpackUtil - Class in net.imagej.tensorflow.util
Utility class for unpacking archives TODO: generalize and move it to a place where others can use it as well
unregisterDisplay(ImageDisplay) - Method in class net.imagej.legacy.LegacyImageMap
Removes the mapping associated with the given ImageDisplay.
unregisterDisplay(ImageDisplay, boolean) - Method in class net.imagej.legacy.LegacyImageMap
As LegacyImageMap.unregisterDisplay(ImageDisplay), with an optional toggle to delete the associated ImagePlus.
unregisterImage(Object) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Releases an image.
unregisterImage(Object) - Method in class net.imagej.legacy.DefaultLegacyHooks
 
unregisterImage(Object) - Method in class net.imagej.patcher.LegacyHooks
Releases an image.
unregisterLegacyImage(ImagePlus) - Method in class net.imagej.legacy.LegacyImageMap
Removes the mapping associated with the given ImagePlus.
unregisterLegacyImage(ImagePlus, boolean) - Method in class net.imagej.legacy.LegacyImageMap
As LegacyImageMap.unregisterLegacyImage(ImagePlus), with an optional toggle to delete the given ImagePlus.
unshearView(RandomAccessible<T>, int, int) - Method in class net.imagej.ops.transform.TransformNamespace
Negative shear transform of a RandomAccessible using InverseShearTransform, i.e.
unshearView(RandomAccessible<T>, Interval, int, int) - Method in class net.imagej.ops.transform.TransformNamespace
Negative shear transform of a RandomAccessible using InverseShearTransform, i.e.
UnshearViewInterval<T> - Class in net.imagej.ops.transform.unshearView
UnshearViewInterval() - Constructor for class net.imagej.ops.transform.unshearView.UnshearViewInterval
 
unsignedRightShift(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
unsignedRightShift(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
unsignedRightShift(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
UNSPECIFIED_BOUNDARY_TEXT - Static variable in class net.imagej.omero.roi.ROIConverters
 
unsupported(String) - Static method in class net.imagej.legacy.convert.roi.Rois
Throws UnsupportedOperationException with the given method name.
unwrap(Module, OpRef) - Static method in class net.imagej.ops.OpUtils
Unwraps the delegate object of the given Module, ensuring it is an instance whose type matches the specified OpRef.
unwrap(Module, Collection<? extends Type>) - Static method in class net.imagej.ops.OpUtils
Unwraps the delegate object of the given Module, ensuring it is an instance of the specified type(s).
Unwrappers - Class in net.imagej.roi
Unwraps MaskPredicates which have been wrapped as (Real)RandomAccessibles, and vice versa.
Unwrappers.MaskAsRandomAccessibleUnwrapper - Class in net.imagej.roi
Unwraps MaskAsRandomAccessible, provided it is of type BoolType.
Unwrappers.MaskIntervalAsRandomAccessibleIntervalUnwrapper - Class in net.imagej.roi
Unwraps MaskIntervalAsRandomAccessibleInterval, provided it is of type BoolType.
Unwrappers.RandomAccessibleAsMaskUnwrapper - Class in net.imagej.roi
Unwraps RandomAccessibleAsMask, provided it is of type BoolType.
Unwrappers.RandomAccessibleIntervalAsMaskIntervalUnwrapper - Class in net.imagej.roi
Unwraps RandomAccessibleIntervalAsMaskInterval, provided it is of type BoolType.
Unwrappers.RealMaskAsRealRandomAccessibleUnwrapper - Class in net.imagej.roi
Unwraps RealMaskAsRealRandomAccessible, provided it is of type BoolType.
Unwrappers.RealMaskRealIntervalAsRealRandomAccessibleRealIntervalUnwrapper - Class in net.imagej.roi
Unwrappers.RealRandomAccessibleAsRealMaskUnwrapper - Class in net.imagej.roi
Unwraps RealRandomAccessibleAsRealMask, provided it is of type BoolType.
Unwrappers.RealRandomAccessibleRealIntervalAsRealMaskRealIntervalUnwrapper - Class in net.imagej.roi
unZip(String, File, LogService, StatusService) - Static method in class net.imagej.tensorflow.util.UnpackUtil
 
unZip(File, ByteArray, LogService, StatusService) - Static method in class net.imagej.tensorflow.util.UnpackUtil
 
update() - Method in interface net.imagej.Data
Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.
update() - Method in interface net.imagej.Dataset
Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.
update() - Method in class net.imagej.DefaultDataset
 
update() - Method in interface net.imagej.display.DataView
Updates and redraws the view onscreen.
update() - Method in class net.imagej.display.DefaultDatasetView
 
update() - Method in class net.imagej.display.DefaultImageDisplay
 
update() - Method in class net.imagej.display.DefaultOverlayView
 
update() - Method in class net.imagej.ImageJ
Gets this application context's UpdateService.
update() - Method in class net.imagej.interval.CombinedRealInterval
 
update(String, double) - Static method in class net.imagej.launcher.SplashScreen
 
update(int, ImagePlus, Roi) - Method in class net.imagej.legacy.convert.TableWrapper
 
update() - Method in class net.imagej.overlay.AbstractOverlay
 
update() - Method in interface net.imagej.overlay.Overlay
Informs interested parties that the data object has undergone a non-structural change, such as sample values being updated.
update() - Method in class net.imagej.space.CombinedSpace
Recomputes the combined space based on its current constituents.
update() - Method in class net.imagej.ui.swing.viewer.image.DatasetFigureView
 
update() - Method in interface net.imagej.ui.swing.viewer.image.FigureView
Updates the figure to match the linked data view.
update() - Method in class net.imagej.ui.swing.viewer.image.OverlayFigureView
 
update(List<String>) - Method in class net.imagej.updater.CommandLine
 
update(List<String>, boolean) - Method in class net.imagej.updater.CommandLine
 
update(List<String>, boolean, boolean) - Method in class net.imagej.updater.CommandLine
 
UPDATE_DIRECTORY - Static variable in class net.imagej.updater.util.UpdaterUtil
 
updateable(boolean) - Method in class net.imagej.updater.FilesCollection
 
updateablePlatforms - Variable in class net.imagej.updater.util.UpdaterUtil
 
updateAndReturnROIs(OMEROLocation, TreeNode<?>, long) - Method in class net.imagej.omero.DefaultOMEROService
 
updateAndReturnROIs(OMEROLocation, TreeNode<?>, long) - Method in interface net.imagej.omero.OMEROService
Converts the given TreeNode to OMERO ROI(s), creating new Objects on the server only for ROIs which didn't previously exist.
UpdateCanceledException - Exception in net.imagej.updater.util
An exception thrown when an operation of the Updater is canceled.
UpdateCanceledException() - Constructor for exception net.imagej.updater.util.UpdateCanceledException
 
updateConflictList() - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
updateConflictList() - Method in class net.imagej.ui.swing.updater.ResolveDependencies
 
updateDataset(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.CompositeHarmonizer
Sets the Dataset's number of composite channels to display simultaneously based on an input ImagePlus's makeup.
updateDataset(Dataset, ImagePlus) - Method in interface net.imagej.legacy.translate.DataHarmonizer
 
updateDataset(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.MetadataHarmonizer
Sets a Dataset's metadata to match a given ImagePlus.
updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
 
updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.CloseBinaryImage
 
updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.DilateBinaryImage
 
updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.ErodeBinaryImage
 
updateDataset(Dataset) - Method in class net.imagej.plugins.commands.binary.OpenBinaryImage
 
updateDependencies(FileObject) - Method in class net.imagej.updater.FilesCollection
 
updateDigest(InputStream, MessageDigest) - Static method in class net.imagej.updater.util.UpdaterUtil
 
updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.ColorTableHarmonizer
Sets the ColorTables of the active view of an modern ImageJ ImageDisplay from the LUTs of a given ImagePlus or CompositeImage.
updateDisplay(ImageDisplay, ImagePlus) - Method in interface net.imagej.legacy.translate.DisplayHarmonizer
 
updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer
Changes the data within a ImageDisplay to match data in an ImagePlus.
updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.NameHarmonizer
Sets the name of the Display to the title of the given ImagePlus.
updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer
Deprecated.
Updates the given ImageDisplay to contain Overlays corresponding to all the given ImagePlus's Rois (both the active Roi and the Rois stored in ImageJ 1.x's current Overlay).
updateDisplay(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.PositionHarmonizer
Updates the given ImageDisplay's position to match that of its paired ImagePlus.
updateFigure(OverlayView, F) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
updateFigure(OverlayView, AngleJHotDrawAdapter.AngleFigure) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
updateFigure(OverlayView, ImageFigure) - Method in class net.imagej.ui.swing.overlay.DefaultJHotDrawAdapter
 
updateFigure(OverlayView, EllipseFigure) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
updateFigure(OverlayView, GeneralPathFigure) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
updateFigure(OverlayView, F) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
Update the appearance of the figure to match the overlay
updateFigure(OverlayView, LineFigure) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
updateFigure(OverlayView, PointFigure) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
updateFigure(OverlayView, BezierFigure) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
updateFigure(OverlayView, BezierFigure) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
updateFigure(OverlayView, RectangleFigure) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
updateFilesize() - Method in class net.imagej.updater.UploadableFile
 
updateFilesTable() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
updateFromLocal(List<String>) - Method in class net.imagej.updater.Checksummer
 
updateFromLocal() - Method in class net.imagej.updater.Checksummer
 
updateInput(ModuleItem<?>) - Method in class net.imagej.command.InteractiveImageCommand
 
updateLabel() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
Recalculate the label text and update it on the panel.
updateLastUsed() - Method in class net.imagej.server.services.DefaultObjectInfo
 
updateLastUsed() - Method in interface net.imagej.server.services.ObjectInfo
 
updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.ColorTableHarmonizer
Sets LUTs of an ImagePlus or CompositeImage.
updateLegacyImage(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.CompositeHarmonizer
 
updateLegacyImage(Dataset, ImagePlus) - Method in interface net.imagej.legacy.translate.DataHarmonizer
 
updateLegacyImage(ImageDisplay, ImagePlus) - Method in interface net.imagej.legacy.translate.DisplayHarmonizer
 
updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.Harmonizer
Changes the data within an ImagePlus to match data in a ImageDisplay.
updateLegacyImage(Dataset, ImagePlus) - Method in class net.imagej.legacy.translate.MetadataHarmonizer
Sets an ImagePlus' metadata to match a given Dataset.
updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.NameHarmonizer
Sets the title of the ImagePlus to the name of the given Display.
updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.OverlayHarmonizer
Deprecated.
Updates the given ImagePlus's Roi and Overlay to match the modern ImageJ Overlays being visualized in the given ImageDisplay.
updateLegacyImage(ImageDisplay, ImagePlus) - Method in class net.imagej.legacy.translate.PositionHarmonizer
Updates the given ImagePlus's position to match that of its paired ImageDisplay.
updateLegacyImageJSettingsFromModernImageJ() - Method in class net.imagej.legacy.OptionsSynchronizer
Updates legacy ImageJ settings and preferences to reflect values set in modern ImageJ dialogs.
updateMappings() - Method in class net.imagej.ui.swing.updater.FileTable.FileTableModel
 
updateModernImageJSettingsFromLegacyImageJ() - Method in class net.imagej.legacy.OptionsSynchronizer
Updates modern ImageJ options dialog settings to reflect values set by legacy ImageJ plugins.
updateOverlay(F, OverlayView) - Method in class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
updateOverlay(AngleJHotDrawAdapter.AngleFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
updateOverlay(EllipseFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.EllipseJHotDrawAdapter
 
updateOverlay(GeneralPathFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.GeneralPathJHotDrawAdapter
 
updateOverlay(F, OverlayView) - Method in interface net.imagej.ui.swing.overlay.JHotDrawAdapter
Update the overlay to match the appearance of the figure
updateOverlay(LineFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.LineJHotDrawAdapter
 
updateOverlay(PointFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.PointJHotDrawOverlay
 
updateOverlay(BezierFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.PolygonJHotDrawAdapter
 
updateOverlay(BezierFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.PolylineJHotDrawAdapter
 
updateOverlay(RectangleFigure, OverlayView) - Method in class net.imagej.ui.swing.overlay.RectangleJHotDrawAdapter
 
UPDATER_JAR_NAME - Static variable in class net.imagej.updater.Installer
 
updateRecentMenu(String) - Method in class net.imagej.legacy.IJ1Helper
 
updaterFrame - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
updaterFrame - Variable in class net.imagej.ui.swing.updater.FileTable
 
updaterFrame - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
UpdaterFrame - Class in net.imagej.ui.swing.updater
TODO
UpdaterFrame(LogService, UploaderService, FilesCollection) - Constructor for class net.imagej.ui.swing.updater.UpdaterFrame
 
updateROIs(OMEROLocation, TreeNode<?>, long) - Method in class net.imagej.omero.DefaultOMEROService
 
updateROIs(OMEROLocation, TreeNode<?>, long) - Method in interface net.imagej.omero.OMEROService
Converts the given TreeNode to OMERO ROIs(s).
UpdaterUI - Interface in net.imagej.updater
A placeholder interface for graphical user interfaces for the updater.
UpdaterUIPlugin - Interface in net.imagej.updater
Deprecated.
Use UpdaterUI instead.
UpdaterUserInterface - Class in net.imagej.updater.util
A user interface abstraction.
UpdaterUserInterface() - Constructor for class net.imagej.updater.util.UpdaterUserInterface
 
UpdaterUserInterface.StderrInterface - Class in net.imagej.updater.util
 
UpdaterUtil - Class in net.imagej.updater.util
Utility methods for use with the net.imagej.updater package and subpackages.
UpdaterUtil(File) - Constructor for class net.imagej.updater.util.UpdaterUtil
 
UpdateService - Interface in net.imagej.updater
Interface for services that manage ImageJ updates.
updateSettings(OverlaySettings) - Method in class net.imagej.options.OptionsOverlay
Updates the given overlay settings to match these options.
updateSite - Variable in class net.imagej.updater.FileObject
 
UpdateSite - Class in net.imagej.updater
Update sites for the updater.
UpdateSite(String, String, String, String, String, String, long) - Constructor for class net.imagej.updater.UpdateSite
 
updateSite() - Method in class net.imagej.updater.URLChange
 
updateSites - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
updatesTooFast() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
updateTheUpdater(FilesCollection, Progress) - Static method in class net.imagej.updater.Installer
 
updateTheUpdater(FilesCollection, Progress, CommandService) - Static method in class net.imagej.updater.Installer
 
updateTitle() - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer
 
updateTitle() - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
 
updateTitle() - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
updateUploadTimestamp(long) - Method in class net.imagej.updater.FilesUploader
 
updateValues() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
Updates all elements from the first overlay within the list of overlays.
upload(List<Uploadable>, List<String>) - Method in class net.imagej.plugins.uploaders.ssh.SFTPFileUploader
 
upload(List<Uploadable>, List<String>) - Method in class net.imagej.plugins.uploaders.ssh.SSHFileUploader
 
upload(List<Uploadable>, List<String>) - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader
 
upload() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
upload(List<Uploadable>, List<String>) - Method in class net.imagej.updater.AbstractUploader
 
Upload - Class in net.imagej.updater.action
The upload action.
Upload(String) - Constructor for class net.imagej.updater.action.Upload
 
upload(List<String>) - Method in class net.imagej.updater.CommandLine
 
upload(Progress) - Method in class net.imagej.updater.FilesUploader
 
upload(List<Uploadable>, List<String>) - Method in class net.imagej.updater.FileUploader
 
upload(List<Uploadable>, List<String>) - Method in interface net.imagej.updater.Uploader
TODO
uploadable() - Method in class net.imagej.updater.FilesCollection
 
uploadable(boolean) - Method in class net.imagej.updater.FilesCollection
Gets the list of uploadable files.
Uploadable - Interface in net.imagej.updater
A container representing one file to upload.
UploadableFile - Class in net.imagej.updater
A class used for uploading local files.
UploadableFile(FilesCollection, FileObject) - Constructor for class net.imagej.updater.UploadableFile
 
UploadableFile(File, String) - Constructor for class net.imagej.updater.UploadableFile
 
UploadableFile(File, String, String) - Constructor for class net.imagej.updater.UploadableFile
 
uploadAndReturnROIs(OMEROLocation, TreeNode<?>, long) - Method in class net.imagej.omero.DefaultOMEROService
 
uploadAndReturnROIs(OMEROLocation, TreeNode<?>, long) - Method in interface net.imagej.omero.OMEROService
Converts the given TreeNode to OMERO ROI(s), and uploads them all as new Objects to the server.
uploadCompleteSite(List<String>) - Method in class net.imagej.updater.CommandLine
 
uploadDir - Variable in class net.imagej.updater.AbstractUploader
 
uploader() - Method in class net.imagej.ImageJ
Gets this application context's UploaderService.
Uploader - Interface in net.imagej.updater
Interface for ImageJ upload mechanisms.
UploaderService - Interface in net.imagej.updater
Interface for service that manages available ImageJ upload mechanisms.
uploadFile(InputStream, FormDataContentDisposition, String) - Method in class net.imagej.server.resources.ObjectsResource
Reads the user-uploaded file into the imagej runtime.
uploadImage(OMEROLocation, Dataset, boolean, TreeNode<?>, boolean, boolean, List<Table<?, ?>>, String[], long) - Method in class net.imagej.omero.DefaultOMEROService
 
uploadImage(client, Dataset) - Method in class net.imagej.omero.DefaultOMEROService
 
uploadImage(OMEROLocation, Dataset, boolean, TreeNode<?>, boolean, boolean, List<Table<?, ?>>, String[], long) - Method in interface net.imagej.omero.OMEROService
Uploads the given image to OMERO, and optionally uploads the given ROIs and tables.
uploadImage(client, Dataset) - Method in interface net.imagej.omero.OMEROService
Uploads the given ImageJ Dataset's image to OMERO, returning the new image ID on the OMERO server.
uploadImageAttachments(OMEROLocation, long, boolean, boolean, boolean, TreeNode<?>, List<Table<?, ?>>, String[]) - Method in class net.imagej.omero.DefaultOMEROService
 
uploadImageAttachments(OMEROLocation, long, boolean, boolean, boolean, TreeNode<?>, List<Table<?, ?>>, String[]) - Method in interface net.imagej.omero.OMEROService
Uploads the attachments to the OMERO server, and attaches them to the image associated with the given id.
uploadROIs(OMEROLocation, TreeNode<?>, long) - Method in class net.imagej.omero.DefaultOMEROService
 
uploadROIs(OMEROLocation, TreeNode<?>, long) - Method in interface net.imagej.omero.OMEROService
Converts the given TreeNode to OMERO ROI(s), uploads them to the OMEROServer, and attaches them to the image with the specified ID.
uploadTable(OMEROLocation, String, Table<?, ?>, long) - Method in class net.imagej.omero.DefaultOMEROService
 
uploadTable(OMEROLocation, String, Table<?, ?>, long) - Method in interface net.imagej.omero.OMEROService
Uploads an ImageJ table to OMERO, returning the new table ID on the OMERO server.
upperBound(T) - Method in interface net.imagej.types.DataType
Sets a given variable to the upper bound of the underlying NumericType.
upperBound(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
upperBound(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
upperBound(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
 
upperBound(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
upperBound(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
upperBound(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
 
upperBound(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
 
upperBound(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
upperBound(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
upperBound(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
 
upperBound(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
 
upperBound(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
 
upperBound(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
upperBound(NativeBoolType) - Method in class net.imagej.types.DataTypeBoolean
 
upperBound(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
upperBound(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
upperBound(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
upToDate() - Method in class net.imagej.updater.FilesCollection
 
UpToDate - Class in net.imagej.updater
This class helps to determine the status of the current ImageJ installation.
UpToDate() - Constructor for class net.imagej.updater.UpToDate
 
UpToDate.Result - Enum in net.imagej.updater
 
url - Static variable in class net.imagej.plugins.commands.app.ImageJWebsite
 
URLChange - Class in net.imagej.updater
Class indicating automated changes to an update site.
urlsMap - Static variable in class net.imagej.launcher.ClassLoaderPlus
 
usage() - Method in class net.imagej.updater.CommandLine
 
userExists(String) - Method in class net.imagej.util.MediaWikiClient
 
userSiteConvertToHTTP(String) - Static method in class net.imagej.updater.util.HTTPSUtil
 
usesGPU() - Method in class net.imagej.tensorflow.TensorFlowVersion
 
useSystemProxies() - Static method in class net.imagej.updater.util.UpdaterUtil
 
useUserUnits() - Method in class net.imagej.plugins.commands.imglib.ResliceImage
Gets whether reslice spacing field values are in user units or pixel units.
useUserUnits() - Method in class net.imagej.plugins.commands.imglib.TranslateImage
Gets whether input deltas field values are in user units or pixel units.
util - Variable in class net.imagej.updater.FilesCollection
 
util - Variable in class net.imagej.updater.util.DropboxURLMapper
 
Utils - Class in net.imagej.server
 

V

v(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
v() - Method in interface net.imagej.mesh.Vertex
V value of vertex texture coordinate, as a double.
v(long) - Method in interface net.imagej.mesh.Vertices
V value of vertex texture coordinate, as a double.
v0x() - Method in interface net.imagej.mesh.Triangle
X coordinate of triangle's first vertex, as a double.
v0xf() - Method in interface net.imagej.mesh.Triangle
X coordinate of triangle's first vertex, as a float.
v0y() - Method in interface net.imagej.mesh.Triangle
Y coordinate of triangle's first vertex, as a double.
v0yf() - Method in interface net.imagej.mesh.Triangle
Y coordinate of triangle's first vertex, as a float.
v0z() - Method in interface net.imagej.mesh.Triangle
Z coordinate of triangle's first vertex, as a double.
v0zf() - Method in interface net.imagej.mesh.Triangle
Z coordinate of triangle's first vertex, as a float.
v1x() - Method in interface net.imagej.mesh.Triangle
X coordinate of triangle's second vertex, as a double.
v1xf() - Method in interface net.imagej.mesh.Triangle
X coordinate of triangle's second vertex, as a float.
v1y() - Method in interface net.imagej.mesh.Triangle
Y coordinate of triangle's second vertex, as a double.
v1yf() - Method in interface net.imagej.mesh.Triangle
Y coordinate of triangle's second vertex, as a float.
v1z() - Method in interface net.imagej.mesh.Triangle
Z coordinate of triangle's second vertex, as a double.
v1zf() - Method in interface net.imagej.mesh.Triangle
Z coordinate of triangle's second vertex, as a float.
v2x() - Method in interface net.imagej.mesh.Triangle
X coordinate of triangle's third vertex, as a double.
v2xf() - Method in interface net.imagej.mesh.Triangle
X coordinate of triangle's third vertex, as a float.
v2y() - Method in interface net.imagej.mesh.Triangle
Y coordinate of triangle's third vertex, as a double.
v2yf() - Method in interface net.imagej.mesh.Triangle
Y coordinate of triangle's third vertex, as a float.
v2z() - Method in interface net.imagej.mesh.Triangle
Z coordinate of triangle's third vertex, as a double.
v2zf() - Method in interface net.imagej.mesh.Triangle
Z coordinate of triangle's third vertex, as a float.
validate(boolean) - Method in class net.imagej.updater.XMLFileWriter
 
validate(InputStream) - Method in class net.imagej.updater.XMLFileWriter
 
validURL(String) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
value(double, String, String) - Method in class net.imagej.units.DefaultUnitService
 
value(double, String, String) - Method in interface net.imagej.units.UnitService
Returns a value after conversion between two compatible types of units.
valueChanged(ListSelectionEvent) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
valueEquals(BigComplex) - Method in class net.imagej.types.BigComplex
 
valueEquals(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
valueEquals(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
valueEquals(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
valueOf(String) - Static method in enum net.imagej.display.ColorMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.notebook.NotebookService.ValueScaling
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.omero.OMERORef
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.ops.OpCandidate.StatusCode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.ops.special.SpecialOp.Flavor
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.overlay.CompositeOverlay.Operation
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.overlay.Overlay.ArrowStyle
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.overlay.Overlay.LineStyle
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.overlay.TextOverlay.Justification
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin.NeighborhoodType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.render.TextRenderer.FontFamily
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.render.TextRenderer.FontStyle
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.render.TextRenderer.TextJustification
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.ui.swing.overlay.BezierPathFunctions.OP
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.ui.swing.updater.ViewOptions.Option
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.ui.viewer.image.AbstractImageDisplayViewer.ZoomScaleOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.updater.Conflicts.Conflict.Severity
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.updater.Diff.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.updater.FileObject.Action
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.updater.FileObject.Status
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.updater.UpToDate.Result
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.updater.util.ByteCodeAnalyzer.Mode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imagej.updater.util.FilterManifest.Skip
Returns the enum constant of this type with the specified name.
values() - Static method in enum net.imagej.display.ColorMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.notebook.NotebookService.ValueScaling
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.omero.OMERORef
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation2D
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.ops.image.cooccurrenceMatrix.MatrixOrientation3D
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.ops.OpCandidate.StatusCode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.ops.special.SpecialOp.Flavor
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.overlay.CompositeOverlay.Operation
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.overlay.Overlay.ArrowStyle
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.overlay.Overlay.LineStyle
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.overlay.TextOverlay.Justification
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin.NeighborhoodType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.render.TextRenderer.FontFamily
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.render.TextRenderer.FontStyle
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.render.TextRenderer.TextJustification
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.ui.swing.overlay.BezierPathFunctions.OP
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.ui.swing.updater.ViewOptions.Option
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.ui.viewer.image.AbstractImageDisplayViewer.ZoomScaleOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.updater.Conflicts.Conflict.Severity
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.updater.Diff.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.updater.FileObject.Action
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.updater.FileObject.Status
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.updater.UpToDate.Result
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.updater.util.ByteCodeAnalyzer.Mode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imagej.updater.util.FilterManifest.Skip
Returns an array containing the constants of this enum type, in the order they are declared.
Variable1Axis - Class in net.imagej.axis
Abstract superclass for axes with one variable.
Variable1Axis(AxisType) - Constructor for class net.imagej.axis.Variable1Axis
 
Variable1Axis(AxisType, String, double) - Constructor for class net.imagej.axis.Variable1Axis
 
Variable2Axis - Class in net.imagej.axis
Abstract superclass for axes with two variables.
Variable2Axis(AxisType) - Constructor for class net.imagej.axis.Variable2Axis
 
Variable2Axis(AxisType, String, double, double) - Constructor for class net.imagej.axis.Variable2Axis
 
Variable3Axis - Class in net.imagej.axis
Abstract superclass for axes with three variables.
Variable3Axis(AxisType) - Constructor for class net.imagej.axis.Variable3Axis
 
Variable3Axis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.Variable3Axis
 
Variable4Axis - Class in net.imagej.axis
Abstract superclass for axes with four variables.
Variable4Axis(AxisType) - Constructor for class net.imagej.axis.Variable4Axis
 
Variable4Axis(AxisType, String, double, double, double, double) - Constructor for class net.imagej.axis.Variable4Axis
 
VariableAxis - Class in net.imagej.axis
An CalibratedAxis whose calibration is defined by an equation with one or more variables.
VariableAxis(AxisType) - Constructor for class net.imagej.axis.VariableAxis
 
VariableAxis(AxisType, String) - Constructor for class net.imagej.axis.VariableAxis
 
variance(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
variance(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
variance(IterableInterval<T>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "variance" filter operation on the given arguments.
variance(IterableInterval<T>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, T>) - Method in class net.imagej.ops.filter.FilterNamespace
Executes the "variance" filter operation on the given arguments.
variance(Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
variance(O, Iterable<T>) - Method in class net.imagej.ops.stats.StatsNamespace
 
variance() - Method in class net.imagej.plugins.commands.debug.StatisticsDemo
 
VarianceFilterOp<I,O> - Interface in net.imagej.ops.filter.variance
A typed "variance" filter.
vars() - Method in class net.imagej.axis.VariableAxis
Gets the set of variables with assigned values.
VectorAccelerator<T extends RealType<T> & NativeType<T>> - Class in net.imagej.ops.deconvolve.accelerate
Vector Accelerator implements acceleration scheme described in Acceleration of iterative image restoration algorithms David S.C.
VectorAccelerator() - Constructor for class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
verify(Installer.Download) - Method in class net.imagej.updater.Installer
 
verifyTimestamp() - Method in class net.imagej.updater.FilesUploader
 
VerifyTimestamp() - Constructor for class net.imagej.updater.FilesUploader.VerifyTimestamp
 
verifyUnchanged(Uploadable, boolean) - Method in class net.imagej.updater.FilesUploader
 
version() - Static method in class net.imagej.matlab.ImageJMATLAB
Get the version of ImageJMATLAB.
Version(FileObject.Version) - Constructor for class net.imagej.updater.FileObject.Version
 
versionFromClassPathJAR() - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
 
vertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.PolygonRoiWrapper
 
vertex(int) - Method in class net.imagej.legacy.convert.roi.polygon2d.UnmodifiablePolygonRoiWrapper
 
vertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.PolylineRoiWrapper
 
vertex(int) - Method in class net.imagej.legacy.convert.roi.polyline.UnmodifiablePolylineRoiWrapper
 
Vertex - Interface in net.imagej.mesh
One vertex of a Vertices collection.
vertex(int) - Method in interface net.imagej.omero.roi.polyshape.OMEROPolyshape
 
Vertex - Class in net.imagej.ops.geom.geom3d.mesh
Represents vertices of the hull, as well as the points from which it is formed.
Vertex(double, double, double) - Constructor for class net.imagej.ops.geom.geom3d.mesh.Vertex
 
vertex0(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
vertex0(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
vertex0(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
vertex0() - Method in interface net.imagej.mesh.Triangle
Index of first vertex in the triangle.
vertex0(long) - Method in interface net.imagej.mesh.Triangles
Index of first vertex in a triangle.
vertex1(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
vertex1(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
vertex1(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
vertex1() - Method in interface net.imagej.mesh.Triangle
Index of second vertex in the triangle.
vertex1(long) - Method in interface net.imagej.mesh.Triangles
Index of second vertex in a triangle.
vertex2(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Triangles
 
vertex2(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Triangles
 
vertex2(long) - Method in class net.imagej.mesh.nio.BufferMesh.Triangles
 
vertex2() - Method in interface net.imagej.mesh.Triangle
Index of third vertex in the triangle.
vertex2(long) - Method in interface net.imagej.mesh.Triangles
Index of third vertex in a triangle.
VertexInterpolator - Interface in net.imagej.ops.geom.geom3d.mesh
 
vertexInterpolator(int[], int[], double, double, double) - Method in class net.imagej.ops.geom.GeomNamespace
 
vertexInterpolator(int[], int[], double, double) - Method in class net.imagej.ops.geom.GeomNamespace
 
verticalPanel() - Static method in class net.imagej.ui.swing.updater.SwingTools
 
vertices() - Method in interface net.imagej.mesh.Mesh
The mesh's collection of vertices.
vertices() - Method in class net.imagej.mesh.naive.NaiveDoubleMesh
 
Vertices() - Constructor for class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
vertices() - Method in class net.imagej.mesh.naive.NaiveFloatMesh
 
Vertices() - Constructor for class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
vertices() - Method in class net.imagej.mesh.nio.BufferMesh
 
Vertices(FloatBuffer, FloatBuffer, FloatBuffer) - Constructor for class net.imagej.mesh.nio.BufferMesh.Vertices
 
Vertices - Interface in net.imagej.mesh
Collection of vertices for a Mesh.
vertices(Polygon2D) - Static method in class net.imagej.ops.geom.GeomUtils
 
verticesCount(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
verticesCount(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
verticesCount(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
verticesCount(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
verticesCountConvexHull(Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
verticesCountConvexHull(DoubleType, Polygon2D) - Method in class net.imagej.ops.geom.GeomNamespace
 
verticesCountConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
verticesCountConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
verts() - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
vf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
vf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
vf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
vf() - Method in interface net.imagej.mesh.Vertex
V value of vertex texture coordinate, as a float.
vf(long) - Method in interface net.imagej.mesh.Vertices
V value of vertex texture coordinate, as a float.
view(UserInterface, Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer
 
view(DisplayWindow, Display<?>) - Method in class net.imagej.legacy.display.ImagePlusDisplayViewer
 
view(UserInterface, Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
 
view(DisplayWindow, Display<?>) - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
 
view(RandomAccessibleInterval<?>) - Method in interface net.imagej.notebook.NotebookService
Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView.
view(RandomAccessibleInterval<?>, double, double) - Method in interface net.imagej.notebook.NotebookService
Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum values.
view(RandomAccessibleInterval<?>, double[], double[]) - Method in interface net.imagej.notebook.NotebookService
Conveniently wraps a RandomAccessibleInterval into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum arrays.
view(DisplayWindow, Display<?>) - Method in class net.imagej.ui.swing.mdi.viewer.SwingMdiImageDisplayViewer
 
view(DisplayWindow, Display<?>) - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
view(DisplayWindow, Display<?>) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
viewChanged() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
Called when view changes.
viewOptions - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
ViewOptions - Class in net.imagej.ui.swing.updater
TODO
ViewOptions() - Constructor for class net.imagej.ui.swing.updater.ViewOptions
 
ViewOptions.CustomOption - Interface in net.imagej.ui.swing.updater
 
ViewOptions.Option - Enum in net.imagej.ui.swing.updater
 
viewOptionsPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
ViewportResizeEvent - Class in net.imagej.display.event
An event indicating an ImageCanvas viewport has changed size.
ViewportResizeEvent(ImageCanvas) - Constructor for class net.imagej.display.event.ViewportResizeEvent
 
viewRealType(RandomAccessibleInterval<T>) - Method in class net.imagej.notebook.DefaultNotebookService
 
viewRealType(RandomAccessibleInterval<T>) - Method in interface net.imagej.notebook.NotebookService
Conveniently wraps a RandomAccessibleInterval of RealType into a DefaultDatasetView and presets the channel ranges to the given minimum and maximum arrays.
visitLocation(int, int, double) - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher
Called 9 times (3x3), once for each value at a location so implementer can update state for the local neighborhood.
voxelEdgeFaceIntersections(EulerCorrection.Traverser<B>) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
Count the intersections between voxel edges in each 2x2 neighborhood and the faces lining the stack
voxelEdgeIntersections(EulerCorrection.Traverser<B>) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
Count the number of intersections between voxels in each 2x1 neighborhood and the the edges of the stack
voxelFaceIntersections(EulerCorrection.Traverser<B>) - Static method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
Count the intersections between voxels in each 2x2 neighborhood and the faces lining the stack
voxelization(Mesh, int, int, int) - Method in class net.imagej.ops.geom.GeomNamespace
 
voxelization(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
voxelization(Mesh, int) - Method in class net.imagej.ops.geom.GeomNamespace
 
voxelization(Mesh, int, int) - Method in class net.imagej.ops.geom.GeomNamespace
 

W

waitCursor - Variable in class net.imagej.ui.swing.updater.DiffFile
 
waitForFakeDialog(String, Component) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
WandTool - Class in net.imagej.plugins.tools
TODO
WandTool() - Constructor for class net.imagej.plugins.tools.WandTool
 
warn(String) - Method in class net.imagej.ui.swing.updater.DiffView
Add some warnings.
warn(String) - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
warning(SAXParseException) - Method in class net.imagej.updater.XMLFileErrorHandler
 
wasAltKeyDown() - Method in class net.imagej.plugins.tools.PixelRecorder
Returns true if the alt key was down during the mouse event that was recorded.
wasCanceled() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
wasCanceled() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
wasCanceled - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
wasOKed() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
wasOKed() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, boolean, boolean) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "watershed" operation on the given arguments.
watershed(RandomAccessibleInterval<T>, boolean, boolean) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "watershed" operation on the given arguments.
watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, boolean, boolean, RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "watershed" operation on the given arguments.
watershed(RandomAccessibleInterval<B>, boolean, boolean, double...) - Method in class net.imagej.ops.image.ImageNamespace
 
watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<B>, boolean, boolean, double...) - Method in class net.imagej.ops.image.ImageNamespace
 
watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<B>, boolean, boolean, double[], RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.ImageNamespace
 
watershed(RandomAccessibleInterval<T>, boolean, boolean, double) - Method in class net.imagej.ops.image.ImageNamespace
 
watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, boolean, boolean, double) - Method in class net.imagej.ops.image.ImageNamespace
 
watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, boolean, boolean, double, RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.ImageNamespace
 
watershed(RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>, boolean, boolean) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "watershedSeeded" operation on the given arguments.
watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>, boolean, boolean) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "watershedSeeded" operation on the given arguments.
watershed(ImgLabeling<Integer, IntType>, RandomAccessibleInterval<T>, ImgLabeling<Integer, IntType>, boolean, boolean, RandomAccessibleInterval<B>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "watershedSeeded" operation on the given arguments.
Watershed<T extends RealType<T>,B extends BooleanType<B>> - Class in net.imagej.ops.image.watershed
The Watershed algorithm segments and labels a grayscale image analogous to a heightmap.
Watershed() - Constructor for class net.imagej.ops.image.watershed.Watershed
 
WatershedBinary<T extends BooleanType<T>,B extends BooleanType<B>> - Class in net.imagej.ops.image.watershed
The Watershed algorithm segments and labels a grayscale image analogous to a heightmap.
WatershedBinary() - Constructor for class net.imagej.ops.image.watershed.WatershedBinary
 
WatershedBinarySingleSigma<T extends BooleanType<T>,B extends BooleanType<B>> - Class in net.imagej.ops.image.watershed
The Watershed algorithm segments and labels a grayscale image analogous to a heightmap.
WatershedBinarySingleSigma() - Constructor for class net.imagej.ops.image.watershed.WatershedBinarySingleSigma
 
WatershedSeeded<T extends RealType<T>,B extends BooleanType<B>> - Class in net.imagej.ops.image.watershed
The Watershed algorithm segments and labels a grayscale image analogous to a heightmap.
WatershedSeeded() - Constructor for class net.imagej.ops.image.watershed.WatershedSeeded
 
wavelengthToColor(int) - Static method in class net.imagej.plugins.commands.display.SpectralComposite
Converts a wavelength of light to an RGB color.
WebClientDemo - Class in net.imagej.server.external
 
WebClientDemo() - Constructor for class net.imagej.server.external.WebClientDemo
 
WebCommandInfo - Class in net.imagej.server
 
WebCommandInfo(CommandInfo, Module) - Constructor for class net.imagej.server.WebCommandInfo
 
WebCommandModuleItem<T> - Class in net.imagej.server
 
WebCommandModuleItem(CommandInfo, Field) - Constructor for class net.imagej.server.WebCommandModuleItem
 
WebDAVUploader - Class in net.imagej.plugins.uploaders.webdav
Uploads files to an update server using WebDAV.
WebDAVUploader() - Constructor for class net.imagej.plugins.uploaders.webdav.WebDAVUploader
 
WHITE - Static variable in class net.imagej.plugins.commands.binary.Binarize
 
widths - Variable in class net.imagej.ui.swing.updater.SitesDialog.DataModel
 
willBeUpToDate() - Method in class net.imagej.updater.FileObject
 
willNotBeInstalled() - Method in class net.imagej.updater.FileObject
 
window() - Method in class net.imagej.ImageJ
Gets this application context's WindowService.
WindowService - Interface in net.imagej.display
Interface for service that keeps track of open windows, including management of the Windows menu.
WithinRadiusOfPointSetOriginCondition - Class in net.imagej.plugins.commands.assign.noisereduce
A Condition that returns true when a long[] point is within a given radius of the origin of a given PointSet.
WithinRadiusOfPointSetOriginCondition(long, PointSet) - Constructor for class net.imagej.plugins.commands.assign.noisereduce.WithinRadiusOfPointSetOriginCondition
 
worker - Variable in class net.imagej.ui.swing.updater.DiffFile
 
wrap(Img<T>) - Static method in class net.imagej.ImgPlus
Ensures the given Img is an ImgPlus, wrapping if necessary.
wrap(Img<T>, ImgPlusMetadata) - Static method in class net.imagej.ImgPlus
Ensures the given Img is an ImgPlus, wrapping if necessary.
wrap(O) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.AbstractOMERORealMaskToIJRoi
 
wrap(OMEROEllipse) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROEllipseToOvalRoi
 
wrap(OMEROLine) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROLineToIJLine
 
wrap(OMEROMask) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROMaskToImageRoi
 
wrap(OMEROPoint) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPointToPointRoi
 
wrap(OMEROPolygon) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolygonToPolygonRoi
 
wrap(OMEROPolyline) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROPolylineToPolygonRoi
 
wrap(OMERORectangle) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMERORectangleToRoi
 
wrap(OMEROText) - Method in class net.imagej.omero.legacy.convert.OMERORealMaskToIJROI.OMEROTextToTextRoi
 
WrappedIntegralImg<I extends RealType<I>> - Class in net.imagej.ops.image.integral
Wrapper op for the creation of integral images with net.imglib2.algorithm.integral.IntegralImg.
WrappedIntegralImg() - Constructor for class net.imagej.ops.image.integral.WrappedIntegralImg
 
WrappedOMEROEllipseToOMEROEllipse() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse
 
WrappedOMEROLineToOMEROLine() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine
 
WrappedOMEROPointToOMEROPoint() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint
 
WrappedOMEROPolygonToOMEROPolygon() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon
 
WrappedOMEROPolylineToOMEROPolyline() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline
 
WrappedOMERORealMaskToMaskPredicate - Class in net.imagej.omero.legacy.convert
Converts a MaskPredicateWrapper which wraps an OMERORealMask to a MaskPredicate.
WrappedOMERORealMaskToMaskPredicate.AbstractWrappedOMERORealMaskToMaskPredicate<W extends MaskPredicateWrapper<?>,O extends OMERORealMask<?>> - Class in net.imagej.omero.legacy.convert
Abstract base class for converting wrapped OMERORealMasks to OMERORealMask.
WrappedOMERORealMaskToMaskPredicate.OMEROMaskWrapperToOMEROMask - Class in net.imagej.omero.legacy.convert
WrappedOMERORealMaskToMaskPredicate.WrappedOMEROEllipseToOMEROEllipse - Class in net.imagej.omero.legacy.convert
Converts EllipsoidWrapper which wraps OMEROEllipse to OMEROEllipse.
WrappedOMERORealMaskToMaskPredicate.WrappedOMEROLineToOMEROLine - Class in net.imagej.omero.legacy.convert
Converts LineWrapper which wraps OMEROLine to OMEROLine.
WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPointToOMEROPoint - Class in net.imagej.omero.legacy.convert
Converts PointMaskWrapper which wraps OMEROPoint to OMEROPoint.
WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolygonToOMEROPolygon - Class in net.imagej.omero.legacy.convert
Converts Polygon2DWrapper which wraps OMEROPolygon to OMEROPolygon.
WrappedOMERORealMaskToMaskPredicate.WrappedOMEROPolylineToOMEROPolyline - Class in net.imagej.omero.legacy.convert
WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle - Class in net.imagej.omero.legacy.convert
Converts BoxWrapper which wraps OMERORectangle to OMERORectangle.
WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText - Class in net.imagej.omero.legacy.convert
Converts OMEROTextWrapper which wraps OMEROText to OMEROText.
WrappedOMERORectangleToOMERORectangle() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMERORectangleToOMERORectangle
 
WrappedOMEROTextToOMEROText() - Constructor for class net.imagej.omero.legacy.convert.WrappedOMERORealMaskToMaskPredicate.WrappedOMEROTextToOMEROText
 
WrapperToEllipseRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToEllipseRoiConverter
 
WrapperToLineConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToLineConverter
 
WrapperToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToOvalRoiConverter
 
WrapperToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPointRoiConverter
 
WrapperToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToPolygonRoiConverter
 
WrapperToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRoiConverter
 
WrapperToRotatedRectRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToRotatedRectRoiConverter
 
WrapperToShapeRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.RoiUnwrappers.WrapperToShapeRoiConverter
 
WrapperToWritableBoxConverter() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableBoxConverter
 
WrapperToWritableEllipsoid() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableEllipsoid
 
WrapperToWritableLine() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableLine
 
WrapperToWritablePointMask() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePointMask
 
WrapperToWritablePolygon2D() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolygon2D
 
WrapperToWritablePolyline() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritablePolyline
 
WrapperToWritableRealPointCollection() - Constructor for class net.imagej.legacy.convert.roi.MaskPredicateUnwrappers.WrapperToWritableRealPointCollection
 
WritableBoxToRoiConverter - Class in net.imagej.legacy.convert.roi.box
Converts a WritableBox to a Roi.
WritableBoxToRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.box.WritableBoxToRoiConverter
 
WritableEllipsoidToOvalRoiConverter - Class in net.imagej.legacy.convert.roi.ellipsoid
Converts an Ellipsoid to an OvalRoi.
WritableEllipsoidToOvalRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.ellipsoid.WritableEllipsoidToOvalRoiConverter
 
WritableLineToIJLineConverter - Class in net.imagej.legacy.convert.roi.line
Converts a WritableLine to a Line.
WritableLineToIJLineConverter() - Constructor for class net.imagej.legacy.convert.roi.line.WritableLineToIJLineConverter
 
WritablePointMaskToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point
Converts a WritablePointMask to a PointRoi.
WritablePointMaskToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.WritablePointMaskToPointRoiConverter
 
WritablePolygon2DToPolygonRoiConverter - Class in net.imagej.legacy.convert.roi.polygon2d
Converts a WritablePolygon2D to a PolygonRoi of type POLYGON.
WritablePolygon2DToPolygonRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polygon2d.WritablePolygon2DToPolygonRoiConverter
 
WritablePolylineToPolylineRoiConverter - Class in net.imagej.legacy.convert.roi.polyline
Converts an WritablePolyline to an PolygonRoi of type POLYLINE.
WritablePolylineToPolylineRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.polyline.WritablePolylineToPolylineRoiConverter
 
WritableRealPointCollectionToPointRoiConverter - Class in net.imagej.legacy.convert.roi.point
WritableRealPointCollectionToPointRoiConverter() - Constructor for class net.imagej.legacy.convert.roi.point.WritableRealPointCollectionToPointRoiConverter
 
write(Mesh) - Method in class net.imagej.mesh.io.stl.STLMeshIO
Writes the facets into a byte[] that can then be saved into a file
write() - Method in class net.imagej.updater.FilesCollection
 
write(OutputStream, boolean) - Method in class net.imagej.updater.XMLFileWriter
 
writeAscii(Mesh) - Method in class net.imagej.mesh.io.ply.PLYMeshIO
 
writeBinary(Mesh) - Method in class net.imagej.mesh.io.ply.PLYMeshIO
 
writeCachedChecksums() - Method in class net.imagej.updater.Checksummer
 
writeExternal(ObjectOutput) - Method in class net.imagej.AbstractData
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.AbstractOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.AngleOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.BinaryMaskOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.CompositeOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.EllipseOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.GeneralPathOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.LineOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.PointOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.PolygonOverlay
 
writeExternal(ObjectOutput) - Method in class net.imagej.overlay.RectangleOverlay
 
writeFile(File, String) - Static method in class net.imagej.updater.util.UpdaterUtil
 
writeJar(File, boolean, boolean) - Static method in class imagej.patcher.LegacyInjector
Deprecated.
Writes a .jar file with the patched classes.
writeJar(File, boolean, boolean) - Static method in class net.imagej.patcher.LegacyInjector
Writes a .jar file with the patched classes.
writeNativeVersionFile(String, String, TensorFlowVersion) - Static method in class net.imagej.tensorflow.util.TensorFlowUtil
Writing the content of the TensorFlowUtil.TFVERSIONFILE indicating which native version of TensorFlow is installed
writePlane(int, long, Plane, Interval) - Method in class net.imagej.omero.OMEROFormat.Writer
 
Writer() - Constructor for class net.imagej.omero.OMEROFormat.Writer
 
writeSimpleTag(String, String) - Method in class net.imagej.updater.XMLFileWriter
 
writeSimpleTag(String, String, AttributesImpl) - Method in class net.imagej.updater.XMLFileWriter
 
writeSimpleTags(String, Iterable<String>) - Method in class net.imagej.updater.XMLFileWriter
 
writeSingle(boolean, AttributesImpl, FileObject, long) - Method in class net.imagej.updater.XMLFileWriter
 

X

X - Static variable in class net.imagej.axis.Axes
Identifies the X dimensional type, representing a dimension in the first (X) spatial dimension.
x(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
x() - Method in interface net.imagej.mesh.Vertex
X position of vertex, as a double.
x(long) - Method in interface net.imagej.mesh.Vertices
X position of a vertex, as a double.
x0 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
x1 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
xf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
xf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
xf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
xf() - Method in interface net.imagej.mesh.Vertex
X position of vertex, as a float.
xf(long) - Method in interface net.imagej.mesh.Vertices
X position of a vertex, as a float.
XML_COMPRESSED - Static variable in class net.imagej.updater.util.UpdaterUtil
 
XMLFileDownloader - Class in net.imagej.updater
Directly in charge of downloading and saving start-up files (i.e.: XML file and related).
XMLFileDownloader(FilesCollection) - Constructor for class net.imagej.updater.XMLFileDownloader
 
XMLFileDownloader(FilesCollection, Collection<String>) - Constructor for class net.imagej.updater.XMLFileDownloader
 
XMLFileErrorHandler - Class in net.imagej.updater
Our own error handler for XML validation.
XMLFileErrorHandler() - Constructor for class net.imagej.updater.XMLFileErrorHandler
 
XMLFileReader - Class in net.imagej.updater
The XML File Reader reads a locally-cached index of the available file versions.
XMLFileReader(FilesCollection) - Constructor for class net.imagej.updater.XMLFileReader
 
XMLFileWriter - Class in net.imagej.updater
Writes a db.xml.gz file for local and remote use of the updater.
XMLFileWriter(FilesCollection) - Constructor for class net.imagej.updater.XMLFileWriter
 
xor(RealMaskRealInterval) - Method in class net.imagej.omero.legacy.text.OMEROText
xor(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.OMEROText
xor(RealMaskRealInterval) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
xor(Predicate<? super RealLocalizable>) - Method in class net.imagej.omero.legacy.text.TextRoiWrapper
Xor() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.Xor
 
Xor() - Constructor for class net.imagej.ops.logic.IIToIIOutputII.Xor
 
Xor() - Constructor for class net.imagej.ops.logic.IIToRAIOutputII.Xor
 
xor(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace
 
xor(T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
xor(T, T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
xor(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
xor(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
xor(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
xor(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
Xor() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Xor
 
xor(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
xor(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
xor(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
 
xor(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
 
XorDataValuesWith<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by XORing an input Dataset with a user defined constant value.
XorDataValuesWith() - Constructor for class net.imagej.plugins.commands.assign.XorDataValuesWith
 
xSize - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
XYFlipper - Class in net.imagej.plugins.commands.rotate
XYFlipper is used by Rotate90DegreesLeft and Rotate90DegreesRight
XYFlipper(Dataset, RealRect, XYFlipper.FlipCoordinateTransformer) - Constructor for class net.imagej.plugins.commands.rotate.XYFlipper
 
xyPlane() - Method in interface net.imagej.display.DatasetView
 
xyPlane(RandomAccessibleInterval<? extends RealType<?>>) - Method in interface net.imagej.display.DatasetView
 
xyPlane() - Method in class net.imagej.display.DefaultDatasetView
 
xyPlane(RandomAccessibleInterval<? extends RealType<?>>) - Method in class net.imagej.display.DefaultDatasetView
 
XYZPointsIO - Class in net.imagej.mesh.io.xyz
A plugin for reading XYZ files.
XYZPointsIO() - Constructor for class net.imagej.mesh.io.xyz.XYZPointsIO
 

Y

Y - Static variable in class net.imagej.axis.Axes
Identifies the Y dimensional type, representing a dimension in the second (Y) spatial dimension.
y(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
y() - Method in interface net.imagej.mesh.Vertex
Y position of vertex, as a double.
y(long) - Method in interface net.imagej.mesh.Vertices
Y position of a vertex, as a double.
y0 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
y1 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
YELLOW - Static variable in class net.imagej.display.ColorTables
 
Yen() - Constructor for class net.imagej.ops.threshold.ApplyThresholdMethod.Yen
 
yen(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
yen(T, Histogram1d<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
yen(IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
yen(IterableInterval<BitType>, IterableInterval<T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
yen(IterableInterval<B>, RandomAccessibleInterval<T>, Shape) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
yen(IterableInterval<B>, RandomAccessibleInterval<T>, Shape, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
yes() - Method in class net.imagej.updater.FilesCollection
 
yf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
yf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
yf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
yf() - Method in interface net.imagej.mesh.Vertex
Y position of vertex, as a float.
yf(long) - Method in interface net.imagej.mesh.Vertices
Y position of a vertex, as a float.
ySize - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 

Z

Z - Static variable in class net.imagej.axis.Axes
Identifies the Z dimensional type, representing a dimension in the third (Z) spatial dimension.
z(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
z() - Method in interface net.imagej.mesh.Vertex
Z position of vertex, as a double.
z(long) - Method in interface net.imagej.mesh.Vertices
Z position of a vertex, as a double.
z0 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
z1 - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
zernike() - Method in interface net.imagej.ops.OpEnvironment
Gateway into ops of the "zernike" namespace.
ZernikeComputer<T extends RealType<T>> - Class in net.imagej.ops.features.zernike.helper
Computes a specific zernike moment
ZernikeComputer() - Constructor for class net.imagej.ops.features.zernike.helper.ZernikeComputer
 
ZernikeFeature<I extends RealType<I>,O extends RealType<O>> - Interface in net.imagej.ops.features.zernike
Marker interface for zernike ops.
ZernikeMoment - Class in net.imagej.ops.features.zernike.helper
Class to hold a zernike moment, including its polynom, order, repition and complex representation
ZernikeMoment() - Constructor for class net.imagej.ops.features.zernike.helper.ZernikeMoment
 
ZernikeNamespace - Class in net.imagej.ops.features.zernike
Namespace for Zernike features
ZernikeNamespace() - Constructor for class net.imagej.ops.features.zernike.ZernikeNamespace
 
zero(T) - Method in class net.imagej.ops.math.MathNamespace
 
Zero() - Constructor for class net.imagej.ops.math.NullaryNumericTypeMath.Zero
 
ZERO - Static variable in class net.imagej.plugins.commands.io.NewImage
 
zeroMinView(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Translate the source such that the upper left corner is at the origin
zf(long) - Method in class net.imagej.mesh.naive.NaiveDoubleMesh.Vertices
 
zf(long) - Method in class net.imagej.mesh.naive.NaiveFloatMesh.Vertices
 
zf(long) - Method in class net.imagej.mesh.nio.BufferMesh.Vertices
 
zf() - Method in interface net.imagej.mesh.Vertex
Z position of vertex, as a float.
zf(long) - Method in interface net.imagej.mesh.Vertices
Z position of a vertex, as a float.
ZhangSuenThinningStrategy - Class in net.imagej.ops.morphology.thin
Implementation of the thinning algorithm proposed by T.
ZhangSuenThinningStrategy() - Constructor for class net.imagej.ops.morphology.thin.ZhangSuenThinningStrategy
 
ZhangSuenThinningStrategy(boolean) - Constructor for class net.imagej.ops.morphology.thin.ZhangSuenThinningStrategy
Create a new Zhang-Suen thinning strategy.
zoom100Percent(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
 
zoom100Percent(ImageDisplay) - Method in interface net.imagej.display.ZoomService
Zooms the given image display to 100% resolution.
Zoom100Percent - Class in net.imagej.plugins.commands.zoom
Zooms the currently displayed image to 100% resolution.
Zoom100Percent() - Constructor for class net.imagej.plugins.commands.zoom.Zoom100Percent
 
Zoomable - Interface in net.imagej.display
Defines methods needed to adjust the zoom of an ImageCanvas.
ZoomHandler - Class in net.imagej.plugins.tools
Handles the second key mapping for zoom in (not just + but instead here =).
ZoomHandler() - Constructor for class net.imagej.plugins.tools.ZoomHandler
 
zoomIn() - Method in class net.imagej.display.DefaultImageCanvas
 
zoomIn(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
zoomIn(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
zoomIn(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
 
zoomIn() - Method in interface net.imagej.display.Zoomable
Zooms in by the default amount, without changing the viewport's center.
zoomIn(RealCoords) - Method in interface net.imagej.display.Zoomable
Zooms in by the default amount, such that the specified position in data coordinates remains at the same place in the viewport.
zoomIn(IntCoords) - Method in interface net.imagej.display.Zoomable
Zooms in by the default amount, such that the specified position in panel coordinates remains at the same place in the viewport.
zoomIn(ImageDisplay) - Method in interface net.imagej.display.ZoomService
Zooms in on the given image display.
ZoomIn - Class in net.imagej.plugins.commands.zoom
Zooms in on the currently displayed image.
ZoomIn() - Constructor for class net.imagej.plugins.commands.zoom.ZoomIn
 
zoomOriginalScale(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
 
zoomOriginalScale(ImageDisplay) - Method in interface net.imagej.display.ZoomService
Zooms the given image display at the scale it was originally viewed at.
ZoomOriginalScale - Class in net.imagej.plugins.commands.zoom
Zooms the currently displayed image at the scale it was originally viewed at.
ZoomOriginalScale() - Constructor for class net.imagej.plugins.commands.zoom.ZoomOriginalScale
 
zoomOut() - Method in class net.imagej.display.DefaultImageCanvas
 
zoomOut(RealCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
zoomOut(IntCoords) - Method in class net.imagej.display.DefaultImageCanvas
 
zoomOut(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
 
zoomOut() - Method in interface net.imagej.display.Zoomable
Zooms out by the default amount, without changing the viewport's center.
zoomOut(RealCoords) - Method in interface net.imagej.display.Zoomable
Zooms out by the default amount, such that the specified position in data coordinates remains at the same place in the viewport.
zoomOut(IntCoords) - Method in interface net.imagej.display.Zoomable
Zooms out by the default amount, such that the specified position in panel coordinates remains at the same place in the viewport.
zoomOut(ImageDisplay) - Method in interface net.imagej.display.ZoomService
Zooms out on the given image display.
ZoomOut - Class in net.imagej.plugins.commands.zoom
Zooms out on the the currently displayed image.
ZoomOut() - Constructor for class net.imagej.plugins.commands.zoom.ZoomOut
 
ZoomService - Interface in net.imagej.display
Interface for services that perform zoom operations on ImageDisplays.
zoomSet(ImageDisplay, double, double, double) - Method in class net.imagej.display.DefaultZoomService
 
zoomSet(ImageDisplay, double, double, double) - Method in interface net.imagej.display.ZoomService
Zooms in on the center of the given image display at the specified magnification level and center coordinates.
ZoomSet - Class in net.imagej.plugins.commands.zoom
Zooms in on the center of the image at the user-specified magnification level.
ZoomSet() - Constructor for class net.imagej.plugins.commands.zoom.ZoomSet
 
zoomToFit(IntRect) - Method in class net.imagej.display.DefaultImageCanvas
 
zoomToFit(RealRect) - Method in class net.imagej.display.DefaultImageCanvas
 
zoomToFit(RealRect) - Method in interface net.imagej.display.Zoomable
Zoom the viewport to fit the given bounding box in data coordinates.
zoomToFit(IntRect) - Method in interface net.imagej.display.Zoomable
Zooms the viewport to fit the given bounding box in panel coordinates.
ZoomTool - Class in net.imagej.plugins.tools
Tool for zooming in and out of a display using the mouse.
ZoomTool() - Constructor for class net.imagej.plugins.tools.ZoomTool
 
zoomToSelection(ImageDisplay) - Method in class net.imagej.display.DefaultZoomService
 
zoomToSelection(ImageDisplay) - Method in interface net.imagej.display.ZoomService
Zooms in on the given image display's currently selected region.
ZoomToSelection - Class in net.imagej.plugins.commands.zoom
Zooms in on the currently selected region.
ZoomToSelection() - Constructor for class net.imagej.plugins.commands.zoom.ZoomToSelection
 
zSize - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
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