| Package | Description |
|---|---|
| sc.fiji.snt.annotation |
Classes handling neuropil annotations and atlases metadata.
|
| sc.fiji.snt.io |
Classes for importing reconstructions into SNT.
|
| sc.fiji.snt.viewer |
Visualization of reconstructions
|
| Modifier and Type | Method and Description |
|---|---|
OBJMesh |
InsectBrainCompartment.getMesh() |
OBJMesh |
BrainAnnotation.getMesh() |
OBJMesh |
AllenCompartment.getMesh() |
static OBJMesh |
VFBUtils.getMesh(String vfbId)
Retrieves the mesh associated with the specified VFB id.
|
static OBJMesh |
VFBUtils.getMesh(String vfbId,
ColorRGB color)
Retrieves the mesh associated with the specified VFB id.
|
static OBJMesh |
ZBAtlasUtils.getRefBrain()
Retrieves the surface mesh (outline) of the zebrafish template brain.
|
static OBJMesh |
VFBUtils.getRefBrain(String templateBrain)
Retrieves the surface mesh of an adult Drosophila template brain.
|
static OBJMesh |
AllenUtils.getRootMesh(ColorRGB color)
Retrieves the surface contours for the Allen Mouse Brain Atlas (CCF), bundled
with SNT.
|
| Modifier and Type | Method and Description |
|---|---|
static List<OBJMesh> |
InsectBrainUtils.getBrainMeshes(int speciesId,
String sex) |
| Modifier and Type | Method and Description |
|---|---|
List<OBJMesh> |
InsectBrainLoader.getMeshes() |
| Modifier and Type | Method and Description |
|---|---|
OBJMesh |
OBJMesh.duplicate() |
OBJMesh |
Viewer3D.getMesh(String label)
Gets the mesh associated with the specified label.
|
OBJMesh |
Viewer3D.loadMesh(String filePath,
ColorRGB color,
double transparencyPercent)
Loads a Wavefront .OBJ file.
|
OBJMesh |
Viewer3D.loadRefBrain(String template)
Loads the surface mesh of a supported reference brain/neuropil.
|
| Modifier and Type | Method and Description |
|---|---|
List<OBJMesh> |
Viewer3D.getMeshes()
Returns all meshes added to this viewer.
|
List<OBJMesh> |
Viewer3D.getMeshes(boolean visibleOnly)
Returns all meshes added to this viewer.
|
| Modifier and Type | Method and Description |
|---|---|
boolean |
Viewer3D.addMesh(OBJMesh objMesh)
Loads a Wavefront .OBJ file.
|
boolean |
Viewer3D.removeMesh(OBJMesh mesh)
Removes the specified OBJ mesh.
|
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