| Package | Description |
|---|---|
| sc.fiji.snt.analysis.sholl.gui |
GUI customizations (image overlays, plots, etc.) required for Sholl Analysis.
|
| sc.fiji.snt.analysis.sholl.math |
Statistical analysis of Sholl data
|
| Modifier and Type | Method and Description |
|---|---|
ShollStats |
ShollPlot.getStats() |
| Modifier and Type | Method and Description |
|---|---|
void |
ShollPlot.rebuild(ShollStats stats) |
| Constructor and Description |
|---|
ShollPlot(ShollStats stats) |
ShollPlot(ShollStats stats,
boolean cumulativeFrequencies) |
ShollPlot(String title,
String xLabel,
String yLabel,
ShollStats stats,
boolean annotate,
boolean useCumulativeFrequencies) |
ShollTable(ShollStats... stats)
Instantiates a new table capable of detailing metrics from a
LinearProfileStats, a NormalizedProfileStats instance or
both. |
| Modifier and Type | Class and Description |
|---|---|
class |
LinearProfileStats
Retrieves descriptive statistics and calculates Sholl Metrics from sampled
Sholl profiles, including those relying on polynomial fitting.
|
class |
NormalizedProfileStats
Calculates Sholl Metrics from normalized profiles, including Sholl decay and
methods for determination of 'optimal' normalization.
|
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