| Package | Description |
|---|---|
| mpicbg.trakem2.align |
| Modifier and Type | Field and Description |
|---|---|
static Align.ParamOptimize |
AlignTask.p_snap
The ParamOptimize object containg all feature extraction and registration model parameters for the "snap" function.
|
static Align.ParamOptimize |
Align.paramOptimize |
Align.ParamOptimize |
ElasticMontage.Param.po |
| Modifier and Type | Method and Description |
|---|---|
Align.ParamOptimize |
Align.ParamOptimize.clone() |
| Modifier and Type | Method and Description |
|---|---|
static void |
AlignTask.alignMultiLayerMosaicTask(List<Layer> layerRange,
Patch nail,
Align.Param cp,
Align.ParamOptimize p,
Align.ParamOptimize pcp,
boolean tilesAreInPlaceIn,
boolean largestGraphOnlyIn,
boolean hideDisconnectedTilesIn,
boolean deleteDisconnectedTilesIn,
boolean deformIn) |
static void |
AlignTask.alignPatches(Align.ParamOptimize p,
List<Patch> patches,
Collection<Patch> fixedPatches,
boolean tilesAreInPlaceIn,
boolean largestGraphOnlyIn,
boolean hideDisconnectedTilesIn,
boolean deleteDisconnectedTilesIn) |
static void |
AlignTask.alignPatches(Align.ParamOptimize p,
List<Patch> patches,
Collection<Patch> fixedPatches,
boolean tilesAreInPlaceIn,
boolean largestGraphOnlyIn,
boolean hideDisconnectedTilesIn,
boolean deleteDisconnectedTilesIn,
boolean sloppyOverlapTest) |
static void |
AlignTask.alignTiles(Align.ParamOptimize p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>> fixedTiles,
boolean tilesAreInPlaceIn,
boolean largestGraphOnlyIn,
boolean hideDisconnectedTilesIn,
boolean deleteDisconnectedTilesIn) |
static void |
AlignTask.alignTiles(Align.ParamOptimize p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>> fixedTiles,
boolean tilesAreInPlaceIn,
boolean largestGraphOnlyIn,
boolean hideDisconnectedTilesIn,
boolean deleteDisconnectedTilesIn,
boolean sloppyOverlapTest) |
static void |
Align.alignTiles(Align.ParamOptimize p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>> fixedTiles,
boolean tilesAreInPlace,
int numThreads)
Align a set of
tiles using
the following procedure:
Extract SIFT-features from all
tiles.
Establish point-correspondences from
consistent sets of feature matches among tile pairs,
optionally inspect only those that are already overlapping.
Globally align the tile configuration.
Both
feature extraction
and matching
are executed in multiple Threads, with the number of
Threads being a parameter of the method. |
static void |
Align.alignTiles(Align.ParamOptimize p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>> fixedTiles,
int numThreads)
Align a set of overlapping
tiles using
the following procedure:
Extract SIFT-features from all
tiles.
Establish point-correspondences from
consistent sets of feature matches among overlapping
tiles.
Globally align the tile configuration.
Both
feature extraction
and matching
are executed in multiple Threads, with the number of
Threads being a parameter of the method. |
boolean |
Align.ParamOptimize.equals(Align.ParamOptimize p) |
static void |
AlignTask.montageLayers(Align.ParamOptimize p,
List<Layer> layers,
boolean tilesAreInPlaceIn,
boolean largestGraphOnlyIn,
boolean hideDisconnectedTilesIn,
boolean deleteDisconnectedTilesIn) |
static void |
AlignTask.montageLayers(Align.ParamOptimize p,
List<Layer> layers,
boolean tilesAreInPlaceIn,
boolean largestGraphOnlyIn,
boolean hideDisconnectedTilesIn,
boolean deleteDisconnectedTilesIn,
boolean sloppyOverlapTest) |
static void |
Align.optimizeTileConfiguration(Align.ParamOptimize p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>> fixedTiles)
Align a set of
tiles that are
interconnected by point-correspondences. |
static Bureaucrat |
AlignTask.snap(Patch patch,
Align.ParamOptimize p_snapIn,
boolean setup)
Find the most overlapping image to @param patch in the same layer where @param patch sits, and snap @param patch and all its linked Displayable objects.
|
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