| Package | Description |
|---|---|
| mpicbg.trakem2.align | |
| org.janelia.thickness.trakem2 |
| Modifier and Type | Class and Description |
|---|---|
static class |
Align.ParamOptimize |
| Modifier and Type | Field and Description |
|---|---|
protected Align.Param |
Align.ExtractFeaturesThread.p |
protected Align.Param |
Align.MatchFeaturesAndFindModelThread.p |
static Align.Param |
Align.param |
| Modifier and Type | Method and Description |
|---|---|
Align.Param |
Align.Param.clone() |
| Modifier and Type | Method and Description |
|---|---|
static void |
AlignTask.alignMultiLayerMosaicTask(List<Layer> layerRange,
Patch nail,
Align.Param cp,
Align.ParamOptimize p,
Align.ParamOptimize pcp,
boolean tilesAreInPlaceIn,
boolean largestGraphOnlyIn,
boolean hideDisconnectedTilesIn,
boolean deleteDisconnectedTilesIn,
boolean deformIn) |
static void |
Align.alignTileCollections(Align.Param p,
Collection<AbstractAffineTile2D<?>> a,
Collection<AbstractAffineTile2D<?>> b)
Align two collections of tiles
|
static void |
Align.connectTilePairs(Align.Param p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>[]> tilePairs,
int numThreads)
|
static void |
Align.connectTilePairs(Align.Param p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>[]> tilePairs,
int numThreads,
boolean multipleHypotheses)
|
protected static Collection<Feature> |
Align.deserializeFeatures(Align.Param p,
AbstractAffineTile2D<?> t)
Retrieve the features only if saved with the exact same relevant SIFT parameters.
|
protected static Collection<PointMatch> |
Align.deserializePointMatches(Align.Param p,
AbstractAffineTile2D<?> t1,
AbstractAffineTile2D<?> t2) |
boolean |
Align.Param.equals(Align.Param p)
Check if two parameter sets are equal.
|
protected static Collection<Feature> |
Align.fetchFeatures(Align.Param p,
AbstractAffineTile2D<?> t) |
protected static Collection<PointMatch> |
Align.fetchPointMatches(Align.Param p,
AbstractAffineTile2D<?> t1,
AbstractAffineTile2D<?> t2)
Fetch a
Collection of corresponding
SIFT-features. |
protected static boolean |
Align.serializeFeatures(Align.Param p,
AbstractAffineTile2D<?> t,
Collection<Feature> f) |
protected static boolean |
Align.serializePointMatches(Align.Param p,
AbstractAffineTile2D<?> t1,
AbstractAffineTile2D<?> t2,
Collection<PointMatch> m)
Save a
Collection of PointMatches two-sided. |
static void |
Align.tilesFromPatches(Align.Param p,
List<? extends Patch> patches,
Collection<? extends Patch> fixedPatches,
List<AbstractAffineTile2D<?>> tiles,
Collection<AbstractAffineTile2D<?>> fixedTiles)
If a Patch is locked or in fixedPatches, its corresponding Tile is added to fixedTiles.
|
| Constructor and Description |
|---|
ExtractFeaturesThread(Align.Param p,
List<AbstractAffineTile2D<?>> tiles,
AtomicInteger ai,
AtomicInteger ap,
int steps) |
MatchFeaturesAndFindModelThread(Align.Param p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>[]> tilePairs,
AtomicInteger ai,
AtomicInteger ap,
int steps) |
MatchFeaturesAndFindModelThread(Align.Param p,
List<AbstractAffineTile2D<?>> tiles,
List<AbstractAffineTile2D<?>[]> tilePairs,
AtomicInteger ai,
AtomicInteger ap,
int steps,
boolean multipleHypotheses) |
| Modifier and Type | Field and Description |
|---|---|
protected static Align.Param |
LayerZPosition.siftParam |
| Modifier and Type | Method and Description |
|---|---|
static ij.process.FloatProcessor |
LayerZPosition.calculateSIFTSimilarity(List<Layer> layers,
Rectangle fov,
int r,
Align.Param p) |
static void |
LayerZPosition.runSIFT(List<Layer> layers,
Rectangle fov,
int r,
Align.Param p) |
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