| Package | Description |
|---|---|
| bdv.ij.export | |
| mpicbg.spim.io |
| Modifier and Type | Method and Description |
|---|---|
static SpimRegistrationSequence |
Scripting.createSpimRegistrationSequence(String huiskenExperimentXmlFile,
String channels,
String angles,
String timepoints,
int referenceTimePoint)
Deprecated.
|
static SpimRegistrationSequence |
Scripting.createSpimRegistrationSequence(String inputDirectory,
String inputFilePattern,
String channels,
String angles,
String timepoints,
int referenceTimePoint,
boolean overrideImageZStretching,
double zStretching)
Deprecated.
|
protected static SPIMConfiguration |
SpimRegistrationSequence.initExperimentConfiguration(String inputDirectory,
String inputFilePattern,
String angles,
String timepoints,
int referenceTimePoint,
boolean overrideImageZStretching,
double zStretching)
Deprecated.
Instantiate the SPIM configuration only with the necessary parameters
|
protected static SPIMConfiguration |
SpimRegistrationSequence.initExperimentConfiguration(String inputDirectory,
String inputFilePattern,
String channels,
String angles,
String timepoints,
int referenceTimePoint,
boolean overrideImageZStretching,
double zStretching)
Deprecated.
Instantiate the SPIM configuration only with the necessary parameters
|
| Constructor and Description |
|---|
SpimRegistrationSequence(String huiskenExperimentXmlFile,
String channels,
String angles,
String timepoints,
int referenceTimePoint)
Deprecated.
|
SpimRegistrationSequence(String inputDirectory,
String inputFilePattern,
String channels,
String angles,
String timepoints,
int referenceTimePoint,
boolean overrideImageZStretching,
double zStretching)
Deprecated.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SPIMConfiguration.getFileNames() |
void |
SPIMConfiguration.getFilenamesHuisken() |
void |
SPIMConfiguration.parseAngles() |
void |
SPIMConfiguration.parseChannels() |
static SPIMConfiguration |
ConfigurationParserSPIM.parseFile(String confFileName) |
static ProgramConfiguration |
ConfigurationParserGeneral.parseFile(String confFileName) |
void |
SPIMConfiguration.parseIlluminations() |
static ArrayList<Integer> |
SPIMConfiguration.parseIntegerString(String integers) |
void |
SPIMConfiguration.parseTimePoints() |
void |
ProgramConfiguration.parseTimePoints() |
static void |
ConfigurationParserSPIM.testDirectories(SPIMConfiguration conf) |
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