AbstractSingleFitWorker (FLIMLib Javadocs 0-SNAPSHOT API)

java.lang.Object
- flimlib.flimj.fitworker.AbstractFitWorker
- - flimlib.flimj.fitworker.AbstractSingleFitWorker

All Implemented Interfaces:

FitWorker

Direct Known Subclasses:

BayesFitWorker, LMAFitWorker, PhasorFitWorker, RLDFitWorker
```
public abstract class AbstractSingleFitWorker>
extends AbstractFitWorker
```

Nested Class Summary
- Nested classes/interfaces inherited from interface flimlib.flimj.fitworker.FitWorker
 FitWorker.FitEventHandler>

Field Summary

Fields
Modifier and Type	Field and Description
`protected float[]`	`chisqBuffer` Data buffers, all except for `transBuffer` are writable
`protected float[]`	`fittedBuffer` Data buffers, all except for `transBuffer` are writable
`protected float[]`	`paramBuffer` Data buffers, all except for `transBuffer` are writable
`protected float[]`	`residualBuffer` Data buffers, all except for `transBuffer` are writable
`protected float[]`	`transBuffer` Data buffers, all except for `transBuffer` are writable

Fields inherited from class flimlib.flimj.fitworker.AbstractFitWorker
adjFitEnd, adjFitStart, nData, nDataTotal, nParam, ops, params, rawChisq_target, results

Constructor Summary

Constructors
Constructor and Description

AbstractSingleFitWorker(FitParams params, FitResults results, OpEnvironment ops)

Constructors
Constructor and Description
`AbstractSingleFitWorker(FitParams<I> params, FitResults results, OpEnvironment ops)`

Method Summary

All Methods Instance Methods Abstract Methods Concrete Methods
Modifier and Type	Method and Description
`protected void`	`afterFit()` A routine called after `doFit()`.
`protected void`	`beforeFit()` A routine called before `doFit()`.
`protected abstract void`	`doFit()` Does the actual implementation-specific fitting routine.
`protected abstract AbstractSingleFitWorker<I>`	`duplicate(FitParams<I> params, FitResults rslts)` Make a worker of the same kind but does not share any writable buffers (thread safe) if that buffer is null.
`void`	`fitBatch(List<int[]> pos, FitWorker.FitEventHandler<I> handler)` Fit all coordinates listed and handles fit events.
`protected void`	`fitSingle()` Fit the data in the buffer.
`protected void`	`onThreadInit()` Called on the worker thread after worker duplication.

Methods inherited from class flimlib.flimj.fitworker.AbstractFitWorker
nDataOut, nParamOut, populate

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface flimlib.flimj.fitworker.FitWorker
fitBatch

- Field Detail
 - paramBuffer
```
protected final float[] paramBuffer
```
 Data buffers, all except for transBuffer are writable
 - transBuffer
```
protected final float[] transBuffer
```
 Data buffers, all except for transBuffer are writable
 - chisqBuffer
```
protected final float[] chisqBuffer
```
 Data buffers, all except for transBuffer are writable
 - fittedBuffer
```
protected final float[] fittedBuffer
```
 Data buffers, all except for transBuffer are writable
 - residualBuffer
```
protected final float[] residualBuffer
```
 Data buffers, all except for transBuffer are writable
- Constructor Detail
 - AbstractSingleFitWorker
```
public AbstractSingleFitWorker(FitParams params,
 FitResults results,
 OpEnvironment ops)
```
- Method Detail
 - beforeFit
```
protected void beforeFit()
```
 A routine called before doFit(). Can be used to throw away the left-overs from the previous run.
 - doFit
```
protected abstract void doFit()
```
 Does the actual implementation-specific fitting routine.
 - afterFit
```
protected void afterFit()
```
 A routine called after doFit(). Can be used to copy back results from buffers.
 - fitSingle
```
protected void fitSingle()
```
 Fit the data in the buffer.
 - duplicate
```
protected abstract AbstractSingleFitWorker duplicate(FitParams params,
 FitResults rslts)
```
 Make a worker of the same kind but does not share any writable buffers (thread safe) if that buffer is null.
 
 Parameters:
 
 params - the parameters
 
 rslts - the results
 
 Returns:
 
 a worker of the same kind.
 - onThreadInit
```
protected void onThreadInit()
```
 Called on the worker thread after worker duplication. Can be used to initialize thread-local globals such as Bayesian search grid parameters.
 
 See Also:
 
 BayesFitWorker.onThreadInit()
 - fitBatch
```
public void fitBatch(List<int[]> pos,
 FitWorker.FitEventHandler handler)
```
 Description copied from interface: FitWorker
 
 Fit all coordinates listed and handles fit events.
 
 Parameters:
 
 pos - the coordinates of trans to fit
 
 handler - the fit event handler

Class AbstractSingleFitWorker<I extends RealType<I>>

Nested Class Summary

Nested classes/interfaces inherited from interface flimlib.flimj.fitworker.FitWorker

Field Summary

Fields inherited from class flimlib.flimj.fitworker.AbstractFitWorker

Constructor Summary

Method Summary

Methods inherited from class flimlib.flimj.fitworker.AbstractFitWorker

Methods inherited from class java.lang.Object

Methods inherited from interface flimlib.flimj.fitworker.FitWorker

Field Detail

paramBuffer

transBuffer

chisqBuffer

fittedBuffer

residualBuffer

Constructor Detail

AbstractSingleFitWorker

Method Detail

beforeFit

doFit

afterFit

fitSingle

duplicate

onThreadInit

fitBatch