EllipsoidOptimisationStrategy (BoneJ Javadocs 0-SNAPSHOT API)

java.lang.Object
- net.imagej.ops.AbstractOp
- - net.imagej.ops.special.AbstractUnaryOp<I1,O>
  - - net.imagej.ops.special.AbstractBinaryOp<I1,I2,O>
    - - net.imagej.ops.special.function.AbstractBinaryFunctionOp<byte[][],org.joml.Vector3d,QuickEllipsoid>
      - org.bonej.ops.ellipsoid.EllipsoidOptimisationStrategy

All Implemented Interfaces:

Runnable, Environmental, Initializable, Op, BinaryInput<byte[][],org.joml.Vector3d>, BinaryOp<byte[][],org.joml.Vector3d,QuickEllipsoid>, BinaryFunctionOp<byte[][],org.joml.Vector3d,QuickEllipsoid>, NullaryFunctionOp<QuickEllipsoid>, UnaryFunctionOp<byte[][],QuickEllipsoid>, NullaryOp<QuickEllipsoid>, Output<QuickEllipsoid>, SpecialOp, UnaryInput<byte[][]>, UnaryOp<byte[][],QuickEllipsoid>, Threadable, Command, SciJavaPlugin
```
public class EllipsoidOptimisationStrategy
extends AbstractBinaryFunctionOp<byte[][],org.joml.Vector3d,QuickEllipsoid>
```
An Op that handles the stochastic optimisation of local ellipsoids for the Ellipsoid Factor algorithm
Main inputs are a byte array representing the fore- and background, and a seeding point. The input OptimisationParameters regulate the optimisation. The input EllipsoidConstrainStrategy determine how the seed point is constrained. The optimisation consists of a custom order of stochastically "bumping","wiggling" and "turning" the ellipsoid until it achieves a locally maximum volume. Returns a locally maximal ellipsoid.

Author:

Alessandro Felder

- Nested Class Summary
  - Nested classes/interfaces inherited from interface net.imagej.ops.special.SpecialOp
    SpecialOp.Flavor
- Constructor Summary
  
  Constructors
  Constructor and Description
  
  EllipsoidOptimisationStrategy()
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method and Description
  
  QuickEllipsoid calculate(byte[][] pixels, org.joml.Vector3d seedPoint)
  - Methods inherited from class net.imagej.ops.special.function.AbstractBinaryFunctionOp
    in1, in2, out, run, setInput1, setInput2
  - Methods inherited from class net.imagej.ops.AbstractOp
    ops, setEnvironment
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
  - Methods inherited from interface net.imagej.ops.special.function.BinaryFunctionOp
    calculate, getIndependentInstance, run
  - Methods inherited from interface net.imagej.ops.special.BinaryOp
    getArity
  - Methods inherited from interface net.imagej.ops.special.BinaryInput
    in, setInput
  - Methods inherited from interface net.imagej.ops.special.function.UnaryFunctionOp
    calculate, run
  - Methods inherited from interface net.imagej.ops.special.function.NullaryFunctionOp
    run
  - Methods inherited from interface net.imagej.ops.special.SpecialOp
    candidates, filterArity, op
  - Methods inherited from interface net.imagej.ops.Environmental
    ops, setEnvironment
  - Methods inherited from interface net.imagej.ops.Initializable
    initialize

Constructors
Constructor and Description
`EllipsoidOptimisationStrategy()`

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`QuickEllipsoid`	`calculate(byte[][] pixels, org.joml.Vector3d seedPoint)`

Constructor Detail
- EllipsoidOptimisationStrategy
```
public EllipsoidOptimisationStrategy()
```

Method Detail

calculate

public QuickEllipsoid calculate(byte[][] pixels,
                                org.joml.Vector3d seedPoint)

Class EllipsoidOptimisationStrategy

Nested Class Summary

Nested classes/interfaces inherited from interface net.imagej.ops.special.SpecialOp

Constructor Summary

Method Summary

Methods inherited from class net.imagej.ops.special.function.AbstractBinaryFunctionOp

Methods inherited from class net.imagej.ops.AbstractOp

Methods inherited from class java.lang.Object

Methods inherited from interface net.imagej.ops.special.function.BinaryFunctionOp

Methods inherited from interface net.imagej.ops.special.BinaryOp

Methods inherited from interface net.imagej.ops.special.BinaryInput

Methods inherited from interface net.imagej.ops.special.function.UnaryFunctionOp

Methods inherited from interface net.imagej.ops.special.function.NullaryFunctionOp

Methods inherited from interface net.imagej.ops.special.SpecialOp

Methods inherited from interface net.imagej.ops.Environmental

Methods inherited from interface net.imagej.ops.Initializable

Constructor Detail

EllipsoidOptimisationStrategy

Method Detail

calculate