mpicbg.trakem2.transform

Class TransformMeshMappingWithMasks<T extends mpicbg.models.TransformMesh>

java.lang.Object

mpicbg.ij.InvertibleTransformMapping<T>

mpicbg.ij.TransformMeshMapping<T>

mpicbg.trakem2.transform.TransformMeshMappingWithMasks<T>

All Implemented Interfaces:

InverseMapping<T>, InvertibleMapping<T>, Mapping<T>

Direct Known Subclasses:

TransformMeshMapping

public class TransformMeshMappingWithMasks<T extends mpicbg.models.TransformMesh>
extends TransformMeshMapping<T>

Specialized TransformMapping for Patches, that is, rendering the image, outside mask and mask in one go instead three.

Version:

0.1a

Author:

Stephan Saalfeld saalfeld@mpi-cbg.de

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	TransformMeshMappingWithMasks.ImageProcessorWithMasks

Field Summary

Fields inherited from class mpicbg.ij.InvertibleTransformMapping

transform

Constructor Summary

Constructors

Constructor and Description
TransformMeshMappingWithMasks(T t)

Method Summary

Modifier and Type	Method and Description
void	map(ByteProcessor source, ByteProcessor alpha, ByteProcessor target, ByteProcessor targetMask) Render source into master using alpha composition.
void	map(ByteProcessor source, ByteProcessor alpha, ByteProcessor target, ByteProcessor targetMask, int numThreads) Render source into target using alpha composition.
void	map(ColorProcessor source, ByteProcessor alpha, ColorProcessor target, ByteProcessor targetMask) Render source into master using alpha composition.
void	map(ColorProcessor source, ByteProcessor alpha, ColorProcessor target, ByteProcessor targetMask, int numThreads) Render source into master using alpha composition.
void	map(ShortProcessor source, ByteProcessor alpha, ShortProcessor target) Render source into master using alpha composition.
void	map(ShortProcessor source, ByteProcessor alpha, ShortProcessor target, int numThreads) Render source into target using alpha composition.
void	map(TransformMeshMappingWithMasks.ImageProcessorWithMasks source, TransformMeshMappingWithMasks.ImageProcessorWithMasks target)
void	map(TransformMeshMappingWithMasks.ImageProcessorWithMasks source, TransformMeshMappingWithMasks.ImageProcessorWithMasks target, int numThreads)
protected static void	mapByteAlphaTriangle(mpicbg.models.TransformMesh m, mpicbg.models.AffineModel2D ai, ByteProcessor source, ByteProcessor alpha, ByteProcessor target, ByteProcessor targetMask)
protected static void	mapColorAlphaTriangle(mpicbg.models.TransformMesh m, mpicbg.models.AffineModel2D ai, ColorProcessor source, ByteProcessor alpha, ColorProcessor target, ByteProcessor targetMask) Mapping for color images with alpha composition.
void	mapInterpolated(TransformMeshMappingWithMasks.ImageProcessorWithMasks source, TransformMeshMappingWithMasks.ImageProcessorWithMasks target)
void	mapInterpolated(TransformMeshMappingWithMasks.ImageProcessorWithMasks source, TransformMeshMappingWithMasks.ImageProcessorWithMasks target, int numThreads)
protected static void	mapShortAlphaTriangle(mpicbg.models.TransformMesh m, mpicbg.models.AffineModel2D ai, ShortProcessor source, ByteProcessor alpha, ShortProcessor target)
protected static void	mapTriangle(mpicbg.models.TransformMesh m, mpicbg.models.AffineModel2D ai, ImageProcessor source, ImageProcessor target, ByteProcessor targetOutside)
protected static void	mapTriangle(mpicbg.models.TransformMesh m, mpicbg.models.AffineModel2D ai, ImageProcessor source, ImageProcessor sourceMask, ImageProcessor target, ImageProcessor targetMask, ByteProcessor targetOutside)
protected static void	mapTriangleInterpolated(mpicbg.models.TransformMesh m, mpicbg.models.AffineModel2D ai, ImageProcessor source, ImageProcessor target, ByteProcessor targetOutside)
protected static void	mapTriangleInterpolated(mpicbg.models.TransformMesh m, mpicbg.models.AffineModel2D ai, ImageProcessor source, ImageProcessor sourceMask, ImageProcessor target, ImageProcessor targetMask, ByteProcessor targetOutside) Does not do alpha composition.

Methods inherited from class mpicbg.ij.TransformMeshMapping

calculateBoundingBox, calculateBoundingBoxInverse, isInTriangle, map, map, mapInterpolated, mapInterpolated, mapInverse, mapInverse, mapInverseInterpolated, mapInverseInterpolated, mapTriangle, mapTriangleInterpolated, mapTriangleInverse, mapTriangleInverseInterpolated

Methods inherited from class mpicbg.ij.InvertibleTransformMapping

getTransform

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TransformMeshMappingWithMasks

public TransformMeshMappingWithMasks(T t)

Method Detail

mapTriangle

protected static final void mapTriangle(mpicbg.models.TransformMesh m,
                                        mpicbg.models.AffineModel2D ai,
                                        ImageProcessor source,
                                        ImageProcessor target,
                                        ByteProcessor targetOutside)

mapTriangleInterpolated

protected static final void mapTriangleInterpolated(mpicbg.models.TransformMesh m,
                                                    mpicbg.models.AffineModel2D ai,
                                                    ImageProcessor source,
                                                    ImageProcessor target,
                                                    ByteProcessor targetOutside)

mapTriangle

protected static final void mapTriangle(mpicbg.models.TransformMesh m,
                                        mpicbg.models.AffineModel2D ai,
                                        ImageProcessor source,
                                        ImageProcessor sourceMask,
                                        ImageProcessor target,
                                        ImageProcessor targetMask,
                                        ByteProcessor targetOutside)

mapTriangleInterpolated

protected static final void mapTriangleInterpolated(mpicbg.models.TransformMesh m,
                                                    mpicbg.models.AffineModel2D ai,
                                                    ImageProcessor source,
                                                    ImageProcessor sourceMask,
                                                    ImageProcessor target,
                                                    ImageProcessor targetMask,
                                                    ByteProcessor targetOutside)

Does not do alpha composition.

mapShortAlphaTriangle

protected static final void mapShortAlphaTriangle(mpicbg.models.TransformMesh m,
                                                  mpicbg.models.AffineModel2D ai,
                                                  ShortProcessor source,
                                                  ByteProcessor alpha,
                                                  ShortProcessor target)

map

public final void map(TransformMeshMappingWithMasks.ImageProcessorWithMasks source,
                      TransformMeshMappingWithMasks.ImageProcessorWithMasks target,
                      int numThreads)

mapInterpolated

public final void mapInterpolated(TransformMeshMappingWithMasks.ImageProcessorWithMasks source,
                                  TransformMeshMappingWithMasks.ImageProcessorWithMasks target,
                                  int numThreads)

map

public final void map(TransformMeshMappingWithMasks.ImageProcessorWithMasks source,
                      TransformMeshMappingWithMasks.ImageProcessorWithMasks target)

mapInterpolated

public final void mapInterpolated(TransformMeshMappingWithMasks.ImageProcessorWithMasks source,
                                  TransformMeshMappingWithMasks.ImageProcessorWithMasks target)

map

public final void map(ShortProcessor source,
                      ByteProcessor alpha,
                      ShortProcessor target,
                      int numThreads)

Render source into target using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha.

Parameters:

source -

alpha -

target -

numThreads -

map

public final void map(ShortProcessor source,
                      ByteProcessor alpha,
                      ShortProcessor target)

Render source into master using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha.

Parameters:

source -

alpha -

target -

map

public final void map(ColorProcessor source,
                      ByteProcessor alpha,
                      ColorProcessor target,
                      ByteProcessor targetMask)

Render source into master using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha. Mapping for color images with alpha composition.

Parameters:

source -

alpha -

target -

targetMask -

map

public final void map(ColorProcessor source,
                      ByteProcessor alpha,
                      ColorProcessor target,
                      ByteProcessor targetMask,
                      int numThreads)

Render source into master using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha. Mapping for color images with alpha composition.

Parameters:

source -

alpha -

target -

targetMask -

numThreads -

mapColorAlphaTriangle

protected static final void mapColorAlphaTriangle(mpicbg.models.TransformMesh m,
                                                  mpicbg.models.AffineModel2D ai,
                                                  ColorProcessor source,
                                                  ByteProcessor alpha,
                                                  ColorProcessor target,
                                                  ByteProcessor targetMask)

Mapping for color images with alpha composition.

Parameters:

m -

ai -

source -

alpha -

target -

targetMask -

map

public final void map(ByteProcessor source,
                      ByteProcessor alpha,
                      ByteProcessor target,
                      ByteProcessor targetMask,
                      int numThreads)

Render source into target using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha.

Parameters:

source -

alpha -

target -

numThreads -

map

public final void map(ByteProcessor source,
                      ByteProcessor alpha,
                      ByteProcessor target,
                      ByteProcessor targetMask)

Render source into master using alpha composition. Interpolation is specified by the interpolation methods set in source and alpha.

Parameters:

source -

alpha -

target -

mapByteAlphaTriangle

protected static final void mapByteAlphaTriangle(mpicbg.models.TransformMesh m,
                                                 mpicbg.models.AffineModel2D ai,
                                                 ByteProcessor source,
                                                 ByteProcessor alpha,
                                                 ByteProcessor target,
                                                 ByteProcessor targetMask)