mpicbg.spim.data.registration

Class ViewRegistration

java.lang.Object

mpicbg.spim.data.sequence.ViewId

mpicbg.spim.data.registration.ViewRegistration

All Implemented Interfaces:

Comparable<ViewId>

public class ViewRegistration
extends ViewId

Field Summary

Fields

Modifier and Type	Field and Description
protected AffineTransform3D	model The affine registration model of this view mapping local into world coordinates.
protected ArrayList<ViewTransform>	transformList

Fields inherited from class mpicbg.spim.data.sequence.ViewId

setup, timepoint

Constructor Summary

Constructors

Constructor and Description
ViewRegistration(int timepointId, int setupId) Creates a new ViewRegistration object using the identity transformation
ViewRegistration(int timepointId, int setupId, AffineTransform3D transform) Creates a new ViewRegistration object using one AffineTransform3D transform.
ViewRegistration(int timepointId, int setupId, ArrayList<ViewTransform> transforms) Creates a new ViewRegistration object using a list of ViewTransform transforms.

Method Summary

Modifier and Type	Method and Description
void	concatenateTransform(ViewTransform transform) Concatenate a transform to the transform list and update the concatenated model.
AffineTransform3D	getModel() Get the affine registration model of this view mapping local into world coordinates.
List<ViewTransform>	getTransformList() Get the list of transforms.
void	identity() Reset the ViewRegistration to the identity transform
void	preconcatenateTransform(ViewTransform transform) Pre-concatenate a transform to the transform list and update the concatenated model.
void	updateModel() Update the model by concatenating all transforms from the transform list.

Methods inherited from class mpicbg.spim.data.sequence.ViewId

compareTo, equals, getTimePointId, getViewSetupId, hashCode

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

model

protected final AffineTransform3D model

The affine registration model of this view mapping local into world coordinates.

transformList

protected final ArrayList<ViewTransform> transformList

Constructor Detail

ViewRegistration

public ViewRegistration(int timepointId,
                        int setupId)

Creates a new ViewRegistration object using the identity transformation

Parameters:

timepointId -

setupId -

ViewRegistration

public ViewRegistration(int timepointId,
                        int setupId,
                        AffineTransform3D transform)

Creates a new ViewRegistration object using one AffineTransform3D transform. The transform specifies a general affine transformation from view-local coordinates (pixels) to global coordinates.

Parameters:

timepointId -

setupId -

transform -

ViewRegistration

public ViewRegistration(int timepointId,
                        int setupId,
                        ArrayList<ViewTransform> transforms)

Creates a new ViewRegistration object using a list of ViewTransform transforms. The affine transformation from view-local coordinates (pixels) to global coordinates is obtained as the concatenation of all transforms.

Parameters:

timepointId -

setupId -

transforms -

Method Detail

getModel

public AffineTransform3D getModel()

Get the affine registration model of this view mapping local into world coordinates.

Returns:

registration model

updateModel

public void updateModel()

Update the model by concatenating all transforms from the transform list.

getTransformList

public List<ViewTransform> getTransformList()

Get the list of transforms. The affine transformation from view-local coordinates (pixels) to global coordinates is obtained as the concatenation of the transforms in the list.

The returned list is modifiable, as well as the transforms it contains. Modifications to the list or individual transforms should be followed by updateModel() to update the concatenated model.

The returned list may be empty, which implies that the overall model is the identity transform.

Returns:

list of transforms, may be empty.

concatenateTransform

public void concatenateTransform(ViewTransform transform)

Concatenate a transform to the transform list and update the concatenated model.

Parameters:

transform -

preconcatenateTransform

public void preconcatenateTransform(ViewTransform transform)

Pre-concatenate a transform to the transform list and update the concatenated model.

Parameters:

transform -

identity

public void identity()

Reset the ViewRegistration to the identity transform