script.imglib

Class ImgLib

java.lang.Object

script.imglib.ImgLib

public class ImgLib
extends Object

A simple wrapper class that is supposed to contain only functions for scripting. To make things very scriptable, the only exception thrown is a RuntimeException, and the corresponding stack traces are output to stderr.

Version:

1.0 2010-12-07

Author:

Johannes Schindelin, Albert Cardona

See Also:

Image

Constructor Summary

Constructors

Constructor and Description
ImgLib()

Method Summary

Modifier and Type	Method and Description
static <T extends RealType<T>> Image<T>	open(String pathOrURL) Open an image from a file path or a web URL.
static <T extends RealType<T>> boolean	save(Image<T> image, String path) Save an image in the appropriate file format according to the filename extension specified in .
static <T extends RealType<T>> boolean	save(Image<T> image, String fileType, String path) Save an image in the format specified by , which can be any of: "tif", "tiff", "zip", "gif", "jpg", "jpeg", "bmp", "pgm", "png", "raw".
static ij.ImagePlus	wrap(Image<?> img) Wrap an Imglib's Image as an ImageJ's ImagePlus of the appropriate type.
static <T extends RealType<T>> Image<T>	wrap(ij.ImagePlus imp) Wrap an ImageJ's ImagePlus as an Imglib Image of the appropriate type.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ImgLib

public ImgLib()

Method Detail

open

public static <T extends RealType<T>> Image<T> open(String pathOrURL)

Open an image from a file path or a web URL.

wrap

public static <T extends RealType<T>> Image<T> wrap(ij.ImagePlus imp)

Wrap an ImageJ's ImagePlus as an Imglib Image of the appropriate type. The data is not copied, but merely accessed with a PlanarArrayContainer.

See Also:

ImagePlusAdapter

wrap

public static final ij.ImagePlus wrap(Image<?> img)

Wrap an Imglib's Image as an ImageJ's ImagePlus of the appropriate type. The data is not copied, but accessed with a special-purpose VirtualStack subclass.

save

public static <T extends RealType<T>> boolean save(Image<T> image,
                                                   String path)

Save an image in the appropriate file format according to the filename extension specified in .

save

public static <T extends RealType<T>> boolean save(Image<T> image,
                                                   String fileType,
                                                   String path)

Save an image in the format specified by , which can be any of: "tif", "tiff", "zip", "gif", "jpg", "jpeg", "bmp", "pgm", "png", "raw". When saving as TIFF, if the image has more than 2 dimensions, it will be saved as a stack.