Index (Fiji-Lib 2.1.3 API)

A B C D E F G H I J K L M N O P R S T U V W X Y

A

a - Variable in class fiji.util.Levenshtein
AbstractAnnotation - Class in fiji.util.gui: Abstract class dedicated to draw overlayed annotations on a OverlayedImageCanvas.
AbstractAnnotation() - Constructor for class fiji.util.gui.AbstractAnnotation
AbstractTool - Class in fiji.tool
AbstractTool() - Constructor for class fiji.tool.AbstractTool
AbstractTool.KeyProxy - Class in fiji.tool
AbstractTool.KeyProxyIfNotConsumed - Class in fiji.tool
AbstractTool.MouseMotionProxy - Class in fiji.tool
AbstractTool.MouseMotionProxyIfNotConsumed - Class in fiji.tool
AbstractTool.MouseProxy - Class in fiji.tool
AbstractTool.MouseWheelProxy - Class in fiji.tool
AbstractTool.MouseWheelProxyIfNotConsumed - Class in fiji.tool
AbstractTool.ToolbarMouseAdapter - Class in fiji.tool: This class is used to monitor tool toggles and double-clicks on the toolbar icon of this concrete tool.
AbstractTrackingTool - Class in fiji.tool
AbstractTrackingTool() - Constructor for class fiji.tool.AbstractTrackingTool
accumulate(RoiStatistics.Accessor) - Method in class fiji.statistics.RoiStatistics
accumulator - Variable in class fiji.statistics.RoiStatistics
Action(String, String) - Constructor for class fiji.util.gui.CommandFinderBase.Action
action(String) - Method in class fiji.util.MenuItemDiverter
actionPerformed(ActionEvent) - Method in class fiji.util.gui.CommandFinderBase
actions - Variable in class fiji.util.gui.CommandFinderBase
actions - Static variable in class fiji.util.MenuItemDiverter
activeHandle - Variable in class fiji.tool.AbstractTrackingTool
actualSize - Variable in class fiji.util.ArrayBase
add(double) - Method in class fiji.util.DoubleArray: Deprecated.
add(float) - Method in class fiji.util.FloatArray: Deprecated.
add(int) - Method in class fiji.util.IntArray: Deprecated.
addButton(String, ActionListener) - Method in class fiji.util.gui.GenericDialogPlus: Add button to the dialog
addComponent(Component) - Method in class fiji.util.gui.GenericDialogPlus
addComponent(Component, int, double) - Method in class fiji.util.gui.GenericDialogPlus
addDirectoryField(String, String) - Method in class fiji.util.gui.GenericDialogPlus
addDirectoryField(String, String, int) - Method in class fiji.util.gui.GenericDialogPlus
addDirectoryOrFileField(String, String) - Method in class fiji.util.gui.GenericDialogPlus
addDirectoryOrFileField(String, String, int) - Method in class fiji.util.gui.GenericDialogPlus
addFileField(String, String) - Method in class fiji.util.gui.GenericDialogPlus
addFileField(String, String, int) - Method in class fiji.util.gui.GenericDialogPlus
addImage(String) - Method in class fiji.util.gui.GenericDialogPlus: Adds an image to the generic dialog
addImage(URL) - Method in class fiji.util.gui.GenericDialogPlus: Adds an image to the generic dialog
addImage(ImageIcon) - Method in class fiji.util.gui.GenericDialogPlus: Adds an image to the generic dialog
addImageChoice(String, String) - Method in class fiji.util.gui.GenericDialogPlus
addIOButtons(GenericDialogPlus) - Method in class fiji.tool.AbstractTrackingTool
addKeyListener(Component) - Method in class fiji.tool.AbstractTool
addMouseMotionListener(ImageCanvas) - Method in class fiji.tool.AbstractTool
addMouseWheelListener(ImageWindow) - Method in class fiji.tool.AbstractTool
addOverlay(OverlayedImageCanvas.Overlay) - Method in class fiji.util.gui.OverlayedImageCanvas
addOverlay(Collection<OverlayedImageCanvas.Overlay>) - Method in class fiji.util.gui.OverlayedImageCanvas: Add the collection of overlays to the display list of this canvas
addStringField(String, String, int) - Method in class fiji.util.gui.GenericDialogPlus
adjustmentValueChanged(AdjustmentEvent) - Method in class fiji.tool.SliceObserver
adjustSourceRect(double, int, int) - Method in class fiji.util.gui.JImagePanel
allocated - Variable in class fiji.util.ArrayBase
ArrayBase<ArrayType,BaseType> - Class in fiji.util
ArrayBase(int, int, Class) - Constructor for class fiji.util.ArrayBase
ArrayBase(int, Class) - Constructor for class fiji.util.ArrayBase

B

b - Variable in class fiji.util.Levenshtein
backBufferComposite - Variable in class fiji.util.gui.OverlayedImageCanvas
baseArray - Variable in class fiji.util.DoubleArray: Deprecated.
baseArray - Variable in class fiji.util.FloatArray: Deprecated.
baseArray - Variable in class fiji.util.IntArray: Deprecated.
buildArray() - Method in class fiji.util.ArrayBase
ByteAccessor(ByteProcessor) - Constructor for class fiji.statistics.RoiStatistics.ByteAccessor

C

changedUpdate(DocumentEvent) - Method in class fiji.util.gui.CommandFinderBase.PromptDocumentListener
clear() - Method in class fiji.util.ArrayBase
clearOverlay() - Method in class fiji.util.gui.OverlayedImageCanvas: Remove all OverlayedImageCanvas.Overlay components from this canvas.
clearROIs() - Method in class fiji.tool.AbstractTrackingTool
clearToolsIfNecessary - Variable in class fiji.tool.AbstractTool
closeButton - Variable in class fiji.util.gui.CommandFinderBase
closeCheckBox - Variable in class fiji.util.gui.CommandFinderBase
closeWhenRunning() - Method in class fiji.util.gui.CommandFinderBase
color - Variable in class fiji.util.gui.AbstractAnnotation
CommandFinderBase - Class in fiji.util.gui
CommandFinderBase(String) - Constructor for class fiji.util.gui.CommandFinderBase
CommandFinderBase.Action - Class in fiji.util.gui
CommandFinderBase.LevenshteinPair - Class in fiji.util.gui
CommandFinderBase.PromptDocumentListener - Class in fiji.util.gui
compareTo(CommandFinderBase.LevenshteinPair) - Method in class fiji.util.gui.CommandFinderBase.LevenshteinPair
completions - Variable in class fiji.util.gui.CommandFinderBase
completionsModel - Variable in class fiji.util.gui.CommandFinderBase
composite - Variable in class fiji.util.gui.AbstractAnnotation
contains(double) - Method in class fiji.util.DoubleArray: Deprecated.
contains(float) - Method in class fiji.util.FloatArray: Deprecated.
contains(int) - Method in class fiji.util.IntArray: Deprecated.
cost(String, String) - Method in class fiji.util.Levenshtein
count - Variable in class fiji.statistics.RoiStatistics
CoverMakerUtils - Class in fiji.util: Utility methods for Fiji's Cover Maker script.
CoverMakerUtils() - Constructor for class fiji.util.CoverMakerUtils
createImageIcon(URL) - Static method in class fiji.util.gui.GenericDialogPlus: Returns an ImageIcon, or null if the path was invalid.
crosshairCursor - Static variable in class fiji.util.gui.JImagePanel
cumulative - Variable in class fiji.statistics.RoiStatistics
cumulativeX - Variable in class fiji.statistics.RoiStatistics
cumulativeY - Variable in class fiji.statistics.RoiStatistics
cursor - Static variable in class fiji.util.MenuItemDiverter

D

d - Variable in class fiji.util.Levenshtein
Debug - Class in fiji
Debug() - Constructor for class fiji.Debug
defaultCursor - Static variable in class fiji.util.gui.JImagePanel
different(String, int, String, int) - Static method in class fiji.util.Levenshtein
dispose() - Method in class fiji.util.gui.CommandFinderBase
diversionCursor - Static variable in class fiji.util.MenuItemDiverter
DoubleArray - Class in fiji.util: Deprecated.
Use org.scijava.util.DoubleArray in org.scijava:scijava-common.
DoubleArray(int, int) - Constructor for class fiji.util.DoubleArray: Deprecated.
DoubleArray(int) - Constructor for class fiji.util.DoubleArray: Deprecated.
DoubleArray() - Constructor for class fiji.util.DoubleArray: Deprecated.
draw(Graphics2D) - Method in class fiji.util.gui.AbstractAnnotation: Draw this annotation on the OverlayedImageCanvas.
drawOverlay(Graphics) - Method in class fiji.util.gui.JImagePanel
dstHeight - Variable in class fiji.util.gui.JImagePanel
dstWidth - Variable in class fiji.util.gui.JImagePanel

E

e - Variable in class fiji.util.Levenshtein
ensureCapacity(int) - Method in class fiji.util.ArrayBase
equals(String, int, String, int) - Static method in class fiji.util.Levenshtein
error(String) - Method in class fiji.util.gui.CommandFinderBase: Override this function to have your own error box that does not focus on the ImageJ window.
exportButton - Variable in class fiji.util.gui.CommandFinderBase
exportToROIManager() - Method in class fiji.tool.AbstractTrackingTool
exportToROIManager(ImagePlus) - Method in class fiji.tool.AbstractTrackingTool

F

fallbackLibraryExtension - Static variable in class fiji.JNI
fiji - package fiji
fiji.debugging - package fiji.debugging
fiji.statistics - package fiji.statistics
fiji.tool - package fiji.tool
fiji.util - package fiji.util
fiji.util.gui - package fiji.util.gui
findClosingQuote(String, char, int, int) - Static method in class fiji.util.SplitString
flags - Variable in class fiji.util.gui.JImagePanel
FloatAccessor(FloatProcessor) - Constructor for class fiji.statistics.RoiStatistics.FloatAccessor
FloatArray - Class in fiji.util: Deprecated.
Use org.scijava.util.FloatArray in org.scijava:scijava-common.
FloatArray(int, int) - Constructor for class fiji.util.FloatArray: Deprecated.
FloatArray(int) - Constructor for class fiji.util.FloatArray: Deprecated.
FloatArray() - Constructor for class fiji.util.FloatArray: Deprecated.
fullInfoCheckBox - Variable in class fiji.util.gui.CommandFinderBase
fuzzyCheckBox - Variable in class fiji.util.gui.CommandFinderBase
fuzzyMatching() - Method in class fiji.util.gui.CommandFinderBase

G

GenericAccumulator(int, int, ByteProcessor) - Constructor for class fiji.statistics.RoiStatistics.GenericAccumulator
GenericDialogPlus - Class in fiji.util.gui: The GenericDialogPlus class enhances the GenericDialog by a few additional methods.
GenericDialogPlus(String) - Constructor for class fiji.util.gui.GenericDialogPlus
GenericDialogPlus(String, Frame) - Constructor for class fiji.util.gui.GenericDialogPlus
get(Object, String) - Static method in class fiji.Debug
get(Object, String) - Static method in class fiji.debugging.Object_Inspector
get(Field, Object) - Static method in class fiji.debugging.Object_Inspector
get(int) - Method in class fiji.util.DoubleArray: Deprecated.
get(int) - Method in class fiji.util.FloatArray: Deprecated.
get(int) - Method in class fiji.util.IntArray: Deprecated.
getAccessor(ImageProcessor) - Method in class fiji.statistics.RoiStatistics
getAction(Object) - Method in class fiji.util.MenuItemDiverter
getAddIndex() - Method in class fiji.util.ArrayBase
getArray() - Method in class fiji.util.ArrayBase
getArray() - Method in class fiji.util.DoubleArray: Deprecated.
getArray() - Method in class fiji.util.FloatArray: Deprecated.
getArray() - Method in class fiji.util.IntArray: Deprecated.
getAverage() - Method in class fiji.statistics.RoiStatistics
getAverage(ImageProcessor) - Method in class fiji.statistics.RoiStatistics
getCentroidX() - Method in class fiji.statistics.RoiStatistics
getCentroidY() - Method in class fiji.statistics.RoiStatistics
getConstraints() - Method in class fiji.util.gui.GenericDialogPlus
getCount() - Method in class fiji.statistics.RoiStatistics
getCumulative() - Method in class fiji.statistics.RoiStatistics
getCursorPath() - Method in class fiji.util.MenuItemDiverter
getExtraInformation() - Method in class fiji.util.gui.CommandFinderBase.Action
getf(int, int) - Method in interface fiji.statistics.RoiStatistics.Accessor
getf(int, int) - Method in class fiji.statistics.RoiStatistics.ByteAccessor
getf(int, int) - Method in class fiji.statistics.RoiStatistics.FloatAccessor
getf(int, int) - Method in class fiji.statistics.RoiStatistics.RGBAccessor
getf(int, int) - Method in class fiji.statistics.RoiStatistics.ShortAccessor
getHandle(Roi, int, int) - Method in class fiji.tool.AbstractTrackingTool
getHeight() - Method in interface fiji.statistics.RoiStatistics.Accessor
getHeight() - Method in class fiji.statistics.RoiStatistics.ByteAccessor
getHeight() - Method in class fiji.statistics.RoiStatistics.FloatAccessor
getHeight() - Method in class fiji.statistics.RoiStatistics.RGBAccessor
getHeight() - Method in class fiji.statistics.RoiStatistics.ShortAccessor
getImageCanvas(ComponentEvent) - Method in class fiji.tool.AbstractTool
getImagePlus(ComponentEvent) - Method in class fiji.tool.AbstractTool
getImagePlus() - Method in class fiji.tool.SliceObserver
getImageWindow(ComponentEvent) - Method in class fiji.tool.AbstractTool
getJarForItem(String) - Method in class fiji.util.MenuItemHelper
getJarForSuffix(String) - Method in class fiji.util.MenuItemHelper
getLastWord(String) - Method in class fiji.util.MenuItemHelper
getMagnification() - Method in class fiji.util.gui.JImagePanel
getMax() - Method in class fiji.statistics.RoiStatistics
getMin() - Method in class fiji.statistics.RoiStatistics
getModifiers() - Method in class fiji.util.gui.JImagePanel: Returns the mouse event modifiers.
getName(Class, Object) - Static method in class fiji.debugging.Object_Inspector
getNextImage() - Method in class fiji.util.gui.GenericDialogPlus
getOffscreenX(MouseEvent) - Method in class fiji.tool.AbstractTool
getOffscreenXDouble(MouseEvent) - Method in class fiji.tool.AbstractTool
getOffscreenY(MouseEvent) - Method in class fiji.tool.AbstractTool
getOffscreenYDouble(MouseEvent) - Method in class fiji.tool.AbstractTool
getPreferredSize() - Method in class fiji.util.gui.JImagePanel
getROILabel(int, int, Roi) - Method in class fiji.tool.AbstractTrackingTool
getRois(ImagePlus) - Method in class fiji.tool.AbstractTrackingTool
getShape(ShapeRoi) - Static method in class ij.gui.ShapeRoiHelper
getShape(ShapeRoi, Graphics, int, int, double) - Static method in class ij.gui.ShapeRoiHelper
getSliceNumber(String) - Method in class fiji.util.gui.JImagePanel
getSrcRect() - Method in class fiji.util.gui.JImagePanel
getTitle() - Method in class fiji.util.MenuItemDiverter
getToolIcon() - Method in class fiji.tool.AbstractTool: Return the string encoding of the tool icon as it will appear in the toolbar.
getToolIcon() - Method in class fiji.tool.AbstractTrackingTool
getToolID() - Method in class fiji.tool.AbstractTool
getToolName() - Method in class fiji.tool.AbstractTool: Return the tool name.
getWidth() - Method in interface fiji.statistics.RoiStatistics.Accessor
getWidth() - Method in class fiji.statistics.RoiStatistics.ByteAccessor
getWidth() - Method in class fiji.statistics.RoiStatistics.FloatAccessor
getWidth() - Method in class fiji.statistics.RoiStatistics.RGBAccessor
getWidth() - Method in class fiji.statistics.RoiStatistics.ShortAccessor
glob2regex(String) - Static method in class fiji.JNI

H

h - Variable in class fiji.statistics.RoiStatistics.ByteAccessor
h - Variable in class fiji.statistics.RoiStatistics.FloatAccessor
h - Variable in class fiji.statistics.RoiStatistics.ShortAccessor
handCursor - Variable in class fiji.tool.AbstractTrackingTool
handCursor - Static variable in class fiji.util.gui.JImagePanel
handle(int, int, float) - Method in interface fiji.statistics.RoiStatistics.PixelHandler
height - Variable in class fiji.statistics.RoiStatistics.GenericAccumulator

I

ij - Variable in class fiji.util.gui.JImagePanel
ij - Static variable in class fiji.util.MenuItemDiverter
ij.gui - package ij.gui
ijKeyProxy - Variable in class fiji.tool.AbstractTool
image - Variable in class fiji.tool.SliceObserver
imageClosed(ImagePlus) - Method in class fiji.tool.AbstractTool
imageClosed(ImagePlus) - Method in class fiji.tool.SliceObserver
imageHeight - Variable in class fiji.util.gui.JImagePanel
imageOpened(ImagePlus) - Method in class fiji.tool.AbstractTool
imageOpened(ImagePlus) - Method in class fiji.tool.SliceObserver
imageUpdated(ImagePlus) - Method in class fiji.tool.AbstractTool
imageUpdated(ImagePlus) - Method in class fiji.tool.SliceObserver
imageUpdated - Variable in class fiji.util.gui.JImagePanel
imageWidth - Variable in class fiji.util.gui.JImagePanel
imp - Variable in class fiji.util.gui.JImagePanel
importFromROIManager() - Method in class fiji.tool.AbstractTrackingTool
init(ImageProcessor) - Method in class fiji.statistics.RoiStatistics
initGraphics(Graphics, Color) - Method in class fiji.util.gui.JImagePanel
insert(int, double) - Method in class fiji.util.DoubleArray: Deprecated.
insert(int, float) - Method in class fiji.util.FloatArray: Deprecated.
insert(int, int) - Method in class fiji.util.IntArray: Deprecated.
insertUpdate(DocumentEvent) - Method in class fiji.util.gui.CommandFinderBase.PromptDocumentListener
IntArray - Class in fiji.util: Deprecated.
Use org.scijava.util.IntArray in org.scijava:scijava-common.
IntArray(int, int) - Constructor for class fiji.util.IntArray: Deprecated.
IntArray(int) - Constructor for class fiji.util.IntArray: Deprecated.
IntArray() - Constructor for class fiji.util.IntArray: Deprecated.
ip - Variable in class fiji.statistics.RoiStatistics.RGBAccessor
ip - Variable in class fiji.tool.SliceObserver
isQuote(char) - Static method in class fiji.util.SplitString
isThisTool() - Method in class fiji.tool.AbstractTool
itemStateChanged(ItemEvent) - Method in class fiji.util.gui.CommandFinderBase
iterate(RoiStatistics.Accessor, RoiStatistics.PixelHandler) - Method in interface fiji.statistics.RoiStatistics.Accumulator
iterate(RoiStatistics.Accessor, RoiStatistics.PixelHandler) - Method in class fiji.statistics.RoiStatistics.GenericAccumulator
iterate(ImageProcessor, RoiStatistics.PixelHandler) - Method in class fiji.statistics.RoiStatistics
iterate(RoiStatistics.Accessor, RoiStatistics.PixelHandler) - Method in class fiji.statistics.RoiStatistics.RectangleAccumulator
iterator() - Method in class fiji.util.ArrayBase

J

JFrameCommandFinder - Class in fiji.util.gui
JFrameCommandFinder(String, JFrame) - Constructor for class fiji.util.gui.JFrameCommandFinder
JFrameCommandFinder.JMenuItemAction - Class in fiji.util.gui
JImagePanel - Class in fiji.util.gui: This is a Canvas used to display images in a Window.
JImagePanel() - Constructor for class fiji.util.gui.JImagePanel
JImagePanel(ImagePlus) - Constructor for class fiji.util.gui.JImagePanel
JMenuItemAction(JMenuItem, String) - Constructor for class fiji.util.gui.JFrameCommandFinder.JMenuItemAction
JNI - Class in fiji: This class helps you with accessing libraries using JNI
JNI() - Constructor for class fiji.JNI

K

keyPressed(KeyEvent) - Method in class fiji.tool.AbstractTool.KeyProxy
keyPressed(KeyEvent) - Method in class fiji.tool.AbstractTool.KeyProxyIfNotConsumed
keyPressed(KeyEvent) - Method in class fiji.util.gui.CommandFinderBase
keyPressed(KeyEvent) - Method in class fiji.util.gui.GenericDialogPlus
keyPressed(KeyEvent) - Method in class fiji.util.MenuItemDiverter
keyProxy - Variable in class fiji.tool.AbstractTool
KeyProxy(KeyListener) - Constructor for class fiji.tool.AbstractTool.KeyProxy
KeyProxyIfNotConsumed(KeyListener) - Constructor for class fiji.tool.AbstractTool.KeyProxyIfNotConsumed
keyReleased(KeyEvent) - Method in class fiji.tool.AbstractTool.KeyProxy
keyReleased(KeyEvent) - Method in class fiji.tool.AbstractTool.KeyProxyIfNotConsumed
keyReleased(KeyEvent) - Method in class fiji.util.gui.CommandFinderBase
keyReleased(KeyEvent) - Method in class fiji.util.gui.GenericDialogPlus
keyReleased(KeyEvent) - Method in class fiji.util.MenuItemDiverter
keyTyped(KeyEvent) - Method in class fiji.tool.AbstractTool.KeyProxy
keyTyped(KeyEvent) - Method in class fiji.tool.AbstractTool.KeyProxyIfNotConsumed
keyTyped(KeyEvent) - Method in class fiji.util.gui.CommandFinderBase
keyTyped(KeyEvent) - Method in class fiji.util.gui.GenericDialogPlus
keyTyped(KeyEvent) - Method in class fiji.util.MenuItemDiverter

L

label - Variable in class fiji.util.gui.CommandFinderBase.Action
latestCurrentSlice - Variable in class fiji.tool.AbstractTrackingTool
Levenshtein - Class in fiji.util
Levenshtein(int, int, int, int, int, int) - Constructor for class fiji.util.Levenshtein
LevenshteinPair(int, int) - Constructor for class fiji.util.gui.CommandFinderBase.LevenshteinPair
libraryDirectory - Static variable in class fiji.JNI
libraryExtension - Static variable in class fiji.JNI
libraryPrefix - Static variable in class fiji.JNI
listener - Variable in class fiji.tool.AbstractTool.KeyProxy
listener - Variable in class fiji.tool.AbstractTool.KeyProxyIfNotConsumed
listener - Variable in class fiji.tool.AbstractTool.MouseMotionProxy
listener - Variable in class fiji.tool.AbstractTool.MouseMotionProxyIfNotConsumed
listener - Variable in class fiji.tool.AbstractTool.MouseProxy
listener - Variable in class fiji.tool.AbstractTool.MouseWheelProxy
listener - Variable in class fiji.tool.AbstractTool.MouseWheelProxyIfNotConsumed
listener - Variable in class fiji.tool.SliceObserver
loadedLibraries - Static variable in class fiji.JNI
loadLibraries(String) - Static method in class fiji.JNI
loadLibrary(String) - Static method in class fiji.JNI
loadLibrary(File) - Static method in class fiji.JNI
loadROIs() - Method in class fiji.tool.AbstractTrackingTool
loadROIs(ImagePlus) - Method in class fiji.tool.AbstractTrackingTool
loadROIs(ImagePlus, String) - Method in class fiji.tool.AbstractTrackingTool

M

magnification - Variable in class fiji.util.gui.JImagePanel
main(String[]) - Static method in class fiji.tool.SliceObserver
main(String[]) - Static method in class fiji.util.DoubleArray: Deprecated.
main(String[]) - Static method in class fiji.util.FloatArray: Deprecated.
main(String[]) - Static method in class fiji.util.gui.JFrameCommandFinder
main(String[]) - Static method in class fiji.util.IntArray: Deprecated.
main(String[]) - Static method in class fiji.util.Levenshtein
main(String[]) - Static method in class fiji.util.MenuItemHelper
main(String[]) - Static method in class fiji.util.SplitString
main(String[]) - Static method in class fiji.util.TicToc
makeInsertSpace(int) - Method in class fiji.util.ArrayBase
map - Variable in class fiji.tool.AbstractTrackingTool
max - Variable in class fiji.statistics.RoiStatistics
maximumGrowth - Variable in class fiji.util.ArrayBase
maybeUnregister() - Method in class fiji.tool.AbstractTool
MenuItemDiverter - Class in fiji.util: A temporary diverter for all the menu items Use this class to intercept the next click on a menu item.
MenuItemDiverter() - Constructor for class fiji.util.MenuItemDiverter
MenuItemHelper - Class in fiji.util
MenuItemHelper() - Constructor for class fiji.util.MenuItemHelper
menuLocation - Variable in class fiji.util.gui.CommandFinderBase.Action
min - Variable in class fiji.statistics.RoiStatistics
mouseClicked(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseProxy
mouseClicked(MouseEvent) - Method in class fiji.tool.AbstractTrackingTool
mouseClicked(MouseEvent) - Method in class fiji.util.gui.CommandFinderBase
mouseDragged(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseMotionProxy
mouseDragged(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseMotionProxyIfNotConsumed
mouseDragged(MouseEvent) - Method in class fiji.tool.AbstractTrackingTool
mouseEntered(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseProxy
mouseEntered(MouseEvent) - Method in class fiji.tool.AbstractTrackingTool
mouseEntered(MouseEvent) - Method in class fiji.util.gui.CommandFinderBase
mouseExited(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseProxy
mouseExited(MouseEvent) - Method in class fiji.tool.AbstractTrackingTool
mouseExited(MouseEvent) - Method in class fiji.util.gui.CommandFinderBase
mouseMotionProxy - Variable in class fiji.tool.AbstractTool
MouseMotionProxy(MouseMotionListener) - Constructor for class fiji.tool.AbstractTool.MouseMotionProxy
MouseMotionProxyIfNotConsumed(MouseMotionListener) - Constructor for class fiji.tool.AbstractTool.MouseMotionProxyIfNotConsumed
mouseMoved(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseMotionProxy
mouseMoved(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseMotionProxyIfNotConsumed
mouseMoved(MouseEvent) - Method in class fiji.tool.AbstractTrackingTool
mousePressed(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseProxy
mousePressed(MouseEvent) - Method in class fiji.tool.AbstractTrackingTool
mousePressed(MouseEvent) - Method in class fiji.util.gui.CommandFinderBase
mouseProxy - Variable in class fiji.tool.AbstractTool
MouseProxy(MouseListener) - Constructor for class fiji.tool.AbstractTool.MouseProxy
mouseReleased(MouseEvent) - Method in class fiji.tool.AbstractTool.MouseProxy
mouseReleased(MouseEvent) - Method in class fiji.tool.AbstractTool.ToolbarMouseAdapter
mouseReleased(MouseEvent) - Method in class fiji.tool.AbstractTrackingTool
mouseReleased(MouseEvent) - Method in class fiji.util.gui.CommandFinderBase
mouseWheelMoved(MouseWheelEvent) - Method in class fiji.tool.AbstractTool.MouseWheelProxy
mouseWheelMoved(MouseWheelEvent) - Method in class fiji.tool.AbstractTool.MouseWheelProxyIfNotConsumed
mouseWheelMoved(MouseWheelEvent) - Method in class fiji.tool.SliceObserver
mouseWheelProxy - Variable in class fiji.tool.AbstractTool
MouseWheelProxy(MouseWheelListener) - Constructor for class fiji.tool.AbstractTool.MouseWheelProxy
MouseWheelProxyIfNotConsumed(MouseWheelListener) - Constructor for class fiji.tool.AbstractTool.MouseWheelProxyIfNotConsumed
moveCursor - Static variable in class fiji.util.gui.JImagePanel

N

node(DefaultMutableTreeNode, String) - Static method in class fiji.debugging.Object_Inspector
notifyIfChanged() - Method in class fiji.tool.SliceObserver
NumberParser - Class in fiji.util: A static utility class for parsing numbers from strings.

O

Object_Inspector - Class in fiji.debugging
Object_Inspector() - Constructor for class fiji.debugging.Object_Inspector
Object_Inspector.ObjectWrapper - Class in fiji.debugging
ObjectWrapper(String, Object) - Constructor for class fiji.debugging.Object_Inspector.ObjectWrapper
ObjectWrapper(Frame) - Constructor for class fiji.debugging.Object_Inspector.ObjectWrapper
ObjectWrapper(Field, Object) - Constructor for class fiji.debugging.Object_Inspector.ObjectWrapper
ObjectWrapper(Class, String, Object) - Constructor for class fiji.debugging.Object_Inspector.ObjectWrapper
offScreenX(int) - Method in class fiji.util.gui.JImagePanel: Converts a screen x-coordinate to an offscreen x-coordinate.
offScreenXD(int) - Method in class fiji.util.gui.JImagePanel: Converts a screen x-coordinate to a floating-point offscreen x-coordinate.
offScreenY(int) - Method in class fiji.util.gui.JImagePanel: Converts a screen y-coordinate to an offscreen y-coordinate.
offScreenYD(int) - Method in class fiji.util.gui.JImagePanel: Converts a screen y-coordinate to a floating-point offscreen y-coordinate.
openFrame(String, Object) - Static method in class fiji.debugging.Object_Inspector
openFrame(String, DefaultMutableTreeNode) - Method in class fiji.debugging.Object_Inspector
optimizeRoi(Roi, ImageProcessor) - Method in class fiji.tool.AbstractTrackingTool
originalCursor - Variable in class fiji.tool.AbstractTrackingTool
OverlayedImageCanvas - Class in fiji.util.gui: Extension of ImageCanvas to allow multiple overlays
OverlayedImageCanvas(ImagePlus) - Constructor for class fiji.util.gui.OverlayedImageCanvas
OverlayedImageCanvas.Overlay - Interface in fiji.util.gui
overlays - Variable in class fiji.util.gui.OverlayedImageCanvas

P

paint(Graphics, int, int, double) - Method in class fiji.util.gui.AbstractAnnotation
paint(Graphics, int, int, double) - Method in interface fiji.util.gui.OverlayedImageCanvas.Overlay: Paint this overlay on the given graphic device.
paint(Graphics) - Method in class fiji.util.gui.OverlayedImageCanvas
paintComponent(Graphics) - Method in class fiji.util.gui.JImagePanel
paintDoubleBuffered(Graphics) - Method in class fiji.util.gui.JImagePanel
parseDouble(String) - Static method in class fiji.util.NumberParser: Parses a double from the given string, respecting the default Locale.
parseInteger(String) - Static method in class fiji.util.NumberParser: Parses an int from the given string, respecting the default Locale.
parseNumber(String, NumberFormat) - Static method in class fiji.util.NumberParser: Parses a Number from the given string, using the given NumberFormat.
parseNumber(String) - Static method in class fiji.util.NumberParser: Parses a Number from the given string, respecting the default Locale.
pixels - Variable in class fiji.statistics.RoiStatistics.ByteAccessor
pixels - Variable in class fiji.statistics.RoiStatistics.FloatAccessor
pixels - Variable in class fiji.statistics.RoiStatistics.GenericAccumulator
pixels - Variable in class fiji.statistics.RoiStatistics.ShortAccessor
platform - Static variable in class fiji.JNI
populateActions() - Method in class fiji.util.gui.CommandFinderBase: This function is required to populate the list of actions
populateActions() - Method in class fiji.util.gui.JFrameCommandFinder
populateActions(JMenu, String) - Method in class fiji.util.gui.JFrameCommandFinder
populateList(String) - Method in class fiji.util.gui.CommandFinderBase
populateListFuzzily(String, boolean) - Method in class fiji.util.gui.CommandFinderBase
populateMap() - Method in class fiji.util.MenuItemHelper
prompt - Variable in class fiji.util.gui.CommandFinderBase
PromptDocumentListener() - Constructor for class fiji.util.gui.CommandFinderBase.PromptDocumentListener
putPair(Map<String, String>, String) - Static method in class fiji.util.SplitString

R

RectangleAccumulator(Rectangle) - Constructor for class fiji.statistics.RoiStatistics.RectangleAccumulator
register(SliceListener) - Static method in class fiji.tool.SliceObserver
register() - Method in class fiji.tool.SliceObserver
registerTool() - Method in class fiji.tool.AbstractTool
registerTool(ImagePlus) - Method in class fiji.tool.AbstractTool
registerTool(ImageCanvas) - Method in class fiji.tool.AbstractTool
remove(int) - Method in class fiji.util.ArrayBase
removeOverlay(OverlayedImageCanvas.Overlay) - Method in class fiji.util.gui.OverlayedImageCanvas
removeUpdate(DocumentEvent) - Method in class fiji.util.gui.CommandFinderBase.PromptDocumentListener
resetActions() - Method in class fiji.util.MenuItemDiverter
RGBAccessor(ColorProcessor) - Constructor for class fiji.statistics.RoiStatistics.RGBAccessor
RoiStatistics - Class in fiji.statistics
RoiStatistics(Roi) - Constructor for class fiji.statistics.RoiStatistics
RoiStatistics.Accessor - Interface in fiji.statistics
RoiStatistics.Accumulator - Interface in fiji.statistics
RoiStatistics.ByteAccessor - Class in fiji.statistics
RoiStatistics.FloatAccessor - Class in fiji.statistics
RoiStatistics.GenericAccumulator - Class in fiji.statistics
RoiStatistics.PixelHandler - Interface in fiji.statistics
RoiStatistics.RectangleAccumulator - Class in fiji.statistics
RoiStatistics.RGBAccessor - Class in fiji.statistics
RoiStatistics.ShortAccessor - Class in fiji.statistics
run(String, String) - Static method in class fiji.Debug: Debug helper Call this function from your debugger to debug your plugin
run(String) - Method in class fiji.debugging.Object_Inspector
run(String) - Method in class fiji.tool.AbstractTool
run() - Method in class fiji.util.gui.CommandFinderBase.Action
run(CommandFinderBase.Action) - Method in class fiji.util.gui.CommandFinderBase
run(int) - Method in class fiji.util.gui.CommandFinderBase
run() - Method in class fiji.util.gui.JFrameCommandFinder.JMenuItemAction
run(String) - Method in class fiji.util.MenuItemDiverter
runButton - Variable in class fiji.util.gui.CommandFinderBase
runFilter(String, String, String) - Static method in class fiji.Debug: Debug helper Call this function from your debugger to debug your filter plugin
runFilter(String, String, String, boolean) - Static method in class fiji.Debug: Debug helper Call this function from your debugger to debug your filter plugin
runPlugIn(String, String, boolean) - Static method in class fiji.Debug: Debug helper Call this function from your debugger to debug your filter plugin
runSelected() - Method in class fiji.util.gui.CommandFinderBase

S

s - Variable in class fiji.util.Levenshtein
savedToolName - Variable in class fiji.tool.AbstractTool
saveROIs() - Method in class fiji.tool.AbstractTrackingTool
saveROIs(ImagePlus) - Method in class fiji.tool.AbstractTrackingTool
saveROIs(Roi[], String) - Method in class fiji.tool.AbstractTrackingTool
screenX(int) - Method in class fiji.util.gui.JImagePanel: Converts an offscreen x-coordinate to a screen x-coordinate.
screenXD(double) - Method in class fiji.util.gui.JImagePanel: Converts a floating-point offscreen x-coordinate to a screen x-coordinate.
screenY(int) - Method in class fiji.util.gui.JImagePanel: Converts an offscreen y-coordinate to a screen y-coordinate.
screenYD(double) - Method in class fiji.util.gui.JImagePanel: Converts a floating-point offscreen x-coordinate to a screen x-coordinate.
scrollPane - Variable in class fiji.util.gui.CommandFinderBase
set(int, double) - Method in class fiji.util.DoubleArray: Deprecated.
set(int, float) - Method in class fiji.util.FloatArray: Deprecated.
set(int, int) - Method in class fiji.util.IntArray: Deprecated.
setActions() - Method in class fiji.util.MenuItemDiverter
setArray(ArrayType) - Method in class fiji.util.ArrayBase
setArray(double[]) - Method in class fiji.util.DoubleArray: Deprecated.
setArray(float[]) - Method in class fiji.util.FloatArray: Deprecated.
setArray(int[]) - Method in class fiji.util.IntArray: Deprecated.
setColor(Color) - Method in class fiji.util.gui.AbstractAnnotation
setComposite(Composite) - Method in class fiji.util.gui.AbstractAnnotation
setComposite(Composite) - Method in interface fiji.util.gui.OverlayedImageCanvas.Overlay: Set the composite that will be used to paint this overlay.
setDrawingSize(int, int) - Method in class fiji.util.gui.JImagePanel
setImageUpdated() - Method in class fiji.util.gui.JImagePanel: ImagePlus.updateAndDraw calls this method to get paint to update the image from the ImageProcessor.
setMagnification(double) - Method in class fiji.util.gui.JImagePanel
setMagnification2(double) - Method in class fiji.util.gui.JImagePanel
setRoi(ImagePlus, Roi) - Static method in class fiji.tool.AbstractTrackingTool
setSize(int) - Method in class fiji.util.ArrayBase
setSrcRect(Rectangle) - Method in class fiji.util.gui.JImagePanel
setStroke(Stroke) - Method in class fiji.util.gui.AbstractAnnotation
setVisible(boolean) - Method in class fiji.util.gui.CommandFinderBase
ShapeRoiHelper - Class in ij.gui: Wrapper to extract the java.awt.Shape from a ShapeRoi
ShortAccessor(ShortProcessor) - Constructor for class fiji.statistics.RoiStatistics.ShortAccessor
show(Object) - Static method in class fiji.Debug
showFullInformation() - Method in class fiji.util.gui.CommandFinderBase
showOptionDialog() - Method in interface fiji.tool.ToolWithOptions: When called, this method displays the configuration panel for the concrete implementation of this tool.
size() - Method in class fiji.util.ArrayBase
slice - Variable in class fiji.tool.SliceObserver
sliceChanged(ImagePlus) - Method in class fiji.tool.AbstractTrackingTool
sliceChanged(ImagePlus) - Method in interface fiji.tool.SliceListener
sliceListener - Variable in class fiji.tool.AbstractTool
SliceListener - Interface in fiji.tool
SliceObserver - Class in fiji.tool
SliceObserver(ImagePlus, SliceListener) - Constructor for class fiji.tool.SliceObserver
sliceObservers - Variable in class fiji.tool.AbstractTool
splitCommandLine(String) - Static method in class fiji.util.SplitString: Split a command line into single parts, respecting quoted arguments.
splitMacroOptions(String) - Static method in class fiji.util.SplitString: Split a macro-type option string into single parts, respecting brackets.
SplitString - Class in fiji.util
SplitString() - Constructor for class fiji.util.SplitString
srcRect - Variable in class fiji.util.gui.JImagePanel
startTime - Static variable in class fiji.util.TicToc
stroke - Variable in class fiji.util.gui.AbstractAnnotation

T

this2 - Variable in class fiji.tool.AbstractTool.ToolbarMouseAdapter
tic() - Static method in class fiji.util.TicToc
TicToc - Class in fiji.util
TicToc() - Constructor for class fiji.util.TicToc
tileTemplateDifference(List<int[]>) - Static method in class fiji.util.CoverMakerUtils
toc() - Static method in class fiji.util.TicToc
toolActive - Variable in class fiji.tool.AbstractTool
toolbar - Variable in class fiji.tool.AbstractTool
ToolbarMouseAdapter(ToolWithOptions) - Constructor for class fiji.tool.AbstractTool.ToolbarMouseAdapter
toolbarMouseListener - Variable in class fiji.tool.AbstractTool
toolID - Variable in class fiji.tool.AbstractTool
toolToggled(boolean) - Method in interface fiji.tool.ToolToggleListener
toolToggleListener - Variable in class fiji.tool.AbstractTool
ToolToggleListener - Interface in fiji.tool
ToolWithOptions - Interface in fiji.tool
toString(Object) - Static method in class fiji.debugging.Object_Inspector.ObjectWrapper
toString() - Method in class fiji.debugging.Object_Inspector.ObjectWrapper
toString() - Method in class fiji.util.DoubleArray: Deprecated.
toString() - Method in class fiji.util.FloatArray: Deprecated.
toString() - Method in class fiji.util.gui.CommandFinderBase.Action
toString() - Method in class fiji.util.IntArray: Deprecated.
treeWillCollapse(TreeExpansionEvent) - Method in class fiji.debugging.Object_Inspector
treeWillExpand(TreeExpansionEvent) - Method in class fiji.debugging.Object_Inspector
type - Variable in class fiji.util.ArrayBase

U

unregister() - Method in class fiji.tool.SliceObserver
unregisterTool() - Method in class fiji.tool.AbstractTool
unregisterTool(ImagePlus) - Method in class fiji.tool.AbstractTool
unregisterTool(ImageCanvas) - Method in class fiji.tool.AbstractTool
update(JImagePanel) - Method in class fiji.util.gui.JImagePanel: Update this JImagePanel to have the same zoom and scale settings as the one specified.
updateImage(ImagePlus) - Method in class fiji.util.gui.JImagePanel
usePointer - Static variable in class fiji.util.gui.JImagePanel

V

valueOf(int) - Method in class fiji.util.ArrayBase
valueOf(int) - Method in class fiji.util.DoubleArray: Deprecated.
valueOf(int) - Method in class fiji.util.FloatArray: Deprecated.
valueOf(int) - Method in class fiji.util.IntArray: Deprecated.

W

w - Variable in class fiji.statistics.RoiStatistics.ByteAccessor
w - Variable in class fiji.statistics.RoiStatistics.FloatAccessor
w - Variable in class fiji.statistics.RoiStatistics.ShortAccessor
w - Variable in class fiji.util.Levenshtein
waitForImage(Image) - Method in class fiji.util.gui.JImagePanel
wasToolbarCleared() - Method in class fiji.tool.AbstractTool
width - Variable in class fiji.statistics.RoiStatistics.GenericAccumulator
window - Variable in class fiji.tool.SliceObserver
windowActivated(WindowEvent) - Method in class fiji.tool.SliceObserver
windowActivated(WindowEvent) - Method in class fiji.util.gui.CommandFinderBase
windowClosed(WindowEvent) - Method in class fiji.tool.SliceObserver
windowClosed(WindowEvent) - Method in class fiji.util.gui.CommandFinderBase
windowClosing(WindowEvent) - Method in class fiji.tool.SliceObserver
windowClosing(WindowEvent) - Method in class fiji.util.gui.CommandFinderBase
windowDeactivated(WindowEvent) - Method in class fiji.tool.SliceObserver
windowDeactivated(WindowEvent) - Method in class fiji.util.gui.CommandFinderBase
windowDeiconified(WindowEvent) - Method in class fiji.tool.SliceObserver
windowDeiconified(WindowEvent) - Method in class fiji.util.gui.CommandFinderBase
windowGainedFocus(WindowEvent) - Method in class fiji.tool.AbstractTool
windowGainedFocus(WindowEvent) - Method in class fiji.util.MenuItemDiverter
windowIconified(WindowEvent) - Method in class fiji.tool.SliceObserver
windowIconified(WindowEvent) - Method in class fiji.util.gui.CommandFinderBase
windowIDs - Variable in class fiji.util.gui.GenericDialogPlus
windowLostFocus(WindowEvent) - Method in class fiji.tool.AbstractTool
windowLostFocus(WindowEvent) - Method in class fiji.util.MenuItemDiverter
windowOpened(WindowEvent) - Method in class fiji.tool.SliceObserver
windowOpened(WindowEvent) - Method in class fiji.util.gui.CommandFinderBase
windowTitles - Variable in class fiji.util.gui.GenericDialogPlus

X

x - Variable in class fiji.statistics.RoiStatistics.GenericAccumulator
x0 - Variable in class fiji.statistics.RoiStatistics.RectangleAccumulator
x1 - Variable in class fiji.statistics.RoiStatistics.RectangleAccumulator
xMouseStart - Variable in class fiji.util.gui.JImagePanel
xSrcStart - Variable in class fiji.util.gui.JImagePanel

Y

y - Variable in class fiji.statistics.RoiStatistics.GenericAccumulator
y0 - Variable in class fiji.statistics.RoiStatistics.RectangleAccumulator
y1 - Variable in class fiji.statistics.RoiStatistics.RectangleAccumulator
yMouseStart - Variable in class fiji.util.gui.JImagePanel
ySrcStart - Variable in class fiji.util.gui.JImagePanel

A B C D E F G H I J K L M N O P R S T U V W X Y