VolumeViewerPanel (BigVolumeViewer 0.4.1 API)

java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - javax.swing.JComponent
    - - javax.swing.JPanel
      - bdv.viewer.AbstractViewerPanel
        
        bvv.core.VolumeViewerPanel

All Implemented Interfaces:

bdv.viewer.OverlayRenderer, bdv.viewer.render.PainterThread.Paintable, bdv.viewer.RequestRepaint, bdv.viewer.ViewerStateChangeListener, ImageObserver, MenuContainer, Serializable, Accessible
```
public class VolumeViewerPanel
extends bdv.viewer.AbstractViewerPanel
implements bdv.viewer.OverlayRenderer, bdv.viewer.render.PainterThread.Paintable, bdv.viewer.ViewerStateChangeListener
```
See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static interface VolumeViewerPanel.RenderScene
- Nested classes/interfaces inherited from class bdv.viewer.AbstractViewerPanel
  bdv.viewer.AbstractViewerPanel.AlignPlane, bdv.viewer.AbstractViewerPanel.MouseCoordinateListener
- Nested classes/interfaces inherited from class javax.swing.JPanel
  JPanel.AccessibleJPanel
- Nested classes/interfaces inherited from class javax.swing.JComponent
  JComponent.AccessibleJComponent
- Nested classes/interfaces inherited from class java.awt.Container
  Container.AccessibleAWTContainer
- Nested classes/interfaces inherited from class java.awt.Component
  Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Nested Classes
Modifier and Type	Class and Description
`static interface`	`VolumeViewerPanel.RenderScene`

Field Summary

Fields
Modifier and Type	Field and Description
`protected bdv.cache.CacheControl`	`cacheControl`
`protected bdv.viewer.animate.AbstractTransformAnimator`	`currentAnimator` Current animator for viewer transform, or null.
`protected InteractiveGLDisplayCanvas<?>`	`display` Canvas used for displaying the rendered `image` and overlays.
`protected int`	`maxRenderMillis`
`protected bdv.viewer.animate.MessageOverlayAnimator`	`msgOverlay` Fade-out overlay of recent messages.
`protected OffScreenFrameBuffer`	`offscreen`
`protected VolumeViewerOptions.Values`	`options`
`protected ArrayList<bdv.viewer.animate.OverlayAnimator>`	`overlayAnimators` A list of currently incomplete (see `OverlayAnimator.isComplete()`) animators.
`protected bdv.viewer.render.PainterThread`	`painterThread` Thread that triggers repainting of the display.
`protected VolumeRenderer`	`renderer` Renders the current state to gl context.
`protected OffScreenFrameBufferWithDepth`	`sceneBuf`
`protected JSlider`	`sliderTime`
`protected bdv.viewer.state.ViewerState`	`state` Currently rendered state (visible sources, transformation, timepoint, etc.)
`protected ThreadGroup`	`threadGroup` A `ThreadGroup` for (only) the threads used by this `ViewerPanel`, that is, at the moment only `painterThread`.
`protected CopyOnWriteArrayList<bdv.viewer.TimePointListener>`	`timePointListeners` These listeners will be notified about changes to the current timepoint `ViewerState.getCurrentTimepoint()`.
`protected bdv.viewer.VisibilityAndGrouping`	`visibilityAndGrouping` Manages visibility and currentness of sources and groups, as well as grouping of sources, and display mode.

Fields inherited from class bdv.viewer.AbstractViewerPanel
mouseCoordinates

Fields inherited from class javax.swing.JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor and Description
`VolumeViewerPanel(List<bdv.viewer.SourceAndConverter<?>> sources, int numTimepoints, bdv.cache.CacheControl cacheControl, VolumeViewerOptions optional)`

Method Summary

All Methods Instance Methods Concrete Methods Deprecated Methods
Modifier and Type	Method and Description
`void`	`addGroup(bdv.viewer.state.SourceGroup group)` Deprecated. Modify `state()` directly
`void`	`addOverlayAnimator(bdv.viewer.animate.OverlayAnimator animator)` Add a new `OverlayAnimator` to the list of animators.
`void`	`addSource(bdv.viewer.SourceAndConverter<?> sourceAndConverter)` Deprecated. Modify `state()` directly
`void`	`addSources(Collection<bdv.viewer.SourceAndConverter<?>> sourceAndConverter)` Deprecated. Modify `state()` directly
`void`	`addTimePointListener(bdv.viewer.TimePointListener listener)` Add a `TimePointListener` to notify about time-point changes.
`void`	`addTimePointListener(bdv.viewer.TimePointListener listener, int index)` Add a `TimePointListener` to notify about time-point changes.
`void`	`displayToGlobalCoordinates(double[] gPos)` Set `gPos` to the display coordinates at gPos transformed into the global coordinate system.
`void`	`displayToGlobalCoordinates(double x, double y, net.imglib2.RealPositionable gPos)` Set `gPos` to the display coordinates (x,y,0)^T transformed into the global coordinate system.
`<P extends net.imglib2.RealLocalizable & net.imglib2.RealPositionable> void`	`displayToGlobalCoordinates(P gPos)` Set `gPos` to the display coordinates at gPos transformed into the global coordinate system.
`void`	`drawOverlays(Graphics g)`
`bdv.viewer.ConverterSetups`	`getConverterSetups()`
`InteractiveGLDisplayCanvas<?>`	`getDisplay()` Get the viewer canvas.
`Component`	`getDisplayComponent()` Get the AWT `Component` of the viewer canvas.
`org.scijava.ui.behaviour.io.InputTriggerConfig`	`getInputTriggerConfig()`
`VolumeViewerOptions.Values`	`getOptionValues()`
`bdv.viewer.overlay.SourceInfoOverlayRenderer`	`getSourceInfoOverlayRenderer()`
`bdv.viewer.state.ViewerState`	`getState()` Deprecated. Use `state()` instead. Get a copy of the current `ViewerState`.
`bdv.TransformEventHandler`	`getTransformEventHandler()`
`bdv.viewer.VisibilityAndGrouping`	`getVisibilityAndGrouping()` Deprecated. Modify `state()` directly Returns the `VisibilityAndGrouping` that can be used to modify visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
`void`	`nextTimePoint()` Show the next time-point.
`protected void`	`onMouseMoved()`
`void`	`paint()`
`void`	`previousTimePoint()` Show the previous time-point.
`void`	`removeAllSources()` Deprecated. Modify `state()` directly
`void`	`removeGroup(bdv.viewer.state.SourceGroup group)` Deprecated. Modify `state()` directly
`void`	`removeSource(bdv.viewer.Source<?> source)` Deprecated. Modify `state()` directly
`void`	`removeSources(Collection<bdv.viewer.Source<?>> sources)` Deprecated. Modify `state()` directly
`void`	`removeTimePointListener(bdv.viewer.TimePointListener listener)` Remove a `TimePointListener`.
`org.scijava.listeners.Listeners<bdv.viewer.TransformListener<net.imglib2.realtransform.AffineTransform3D>>`	`renderTransformListeners()` Add/remove `TransformListener`s to notify about viewer transformation changes.
`void`	`requestRepaint()` Repaint as soon as possible.
`void`	`requestRepaint(VolumeRenderer.RepaintType type)`
`void`	`setCamParams(double dCam, double dClip)`
`void`	`setCamParams(double dCam, double dClipNear, double dClipFar)`
`void`	`setCanvasSize(int width, int height)`
`void`	`setCurrentViewerTransform(net.imglib2.realtransform.AffineTransform3D viewerTransform)` Deprecated. Modify `state()` directly (`state().setViewerTransform(t)`)
`void`	`setDisplayMode(bdv.viewer.DisplayMode displayMode)` Set the `DisplayMode`.
`void`	`setMaxAllowedStepInVoxels(double maxAllowedStepInVoxels)`
`void`	`setNumTimepoints(int numTimepoints)` Set the number of available timepoints.
`void`	`setRenderScene(VolumeViewerPanel.RenderScene renderScene)`
`void`	`setTimepoint(int timepoint)` Show the specified time-point.
`void`	`setTransformAnimator(bdv.viewer.animate.AbstractTransformAnimator animator)`
`void`	`showMessage(String msg)` Display the specified message in a text overlay for a short time.
`bdv.viewer.SynchronizedViewerState`	`state()` Get the ViewerState.
`void`	`stateFromXml(org.jdom2.Element parent)`
`org.jdom2.Element`	`stateToXml()`
`void`	`stop()` Stop the `painterThread`.
`org.scijava.listeners.Listeners<bdv.viewer.TransformListener<net.imglib2.realtransform.AffineTransform3D>>`	`transformListeners()` Add/remove `TransformListener`s to notify about viewer transformation changes.
`void`	`viewerStateChanged(bdv.viewer.ViewerStateChange change)`

Methods inherited from class bdv.viewer.AbstractViewerPanel
align, getGlobalMouseCoordinates, getMouseCoordinates, requestFocusInWindow

Methods inherited from class javax.swing.JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - cacheControl
```
protected final bdv.cache.CacheControl cacheControl
```
  - sceneBuf
```
protected final OffScreenFrameBufferWithDepth sceneBuf
```
  - offscreen
```
protected final OffScreenFrameBuffer offscreen
```
  - maxRenderMillis
```
protected final int maxRenderMillis
```
  - state
```
protected final bdv.viewer.state.ViewerState state
```
    Currently rendered state (visible sources, transformation, timepoint, etc.) A copy can be obtained by getState().
  - renderer
```
protected final VolumeRenderer renderer
```
    Renders the current state to gl context.
  - display
```
protected final InteractiveGLDisplayCanvas<?> display
```
    Canvas used for displaying the rendered image and overlays.
  - sliderTime
```
protected final JSlider sliderTime
```
  - threadGroup
```
protected ThreadGroup threadGroup
```
    A ThreadGroup for (only) the threads used by this ViewerPanel, that is, at the moment only painterThread.
  - painterThread
```
protected final bdv.viewer.render.PainterThread painterThread
```
    Thread that triggers repainting of the display.
  - visibilityAndGrouping
```
protected final bdv.viewer.VisibilityAndGrouping visibilityAndGrouping
```
    Manages visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
  - timePointListeners
```
protected final CopyOnWriteArrayList<bdv.viewer.TimePointListener> timePointListeners
```
    These listeners will be notified about changes to the current timepoint ViewerState.getCurrentTimepoint(). This is done before calling requestRepaint() so listeners have the chance to interfere.
  - currentAnimator
```
protected bdv.viewer.animate.AbstractTransformAnimator currentAnimator
```
    Current animator for viewer transform, or null. This is for example used to make smooth transitions when AbstractViewerPanel.align(AlignPlane) aligning to orthogonal planes}.
  - overlayAnimators
```
protected final ArrayList<bdv.viewer.animate.OverlayAnimator> overlayAnimators
```
    A list of currently incomplete (see OverlayAnimator.isComplete()) animators. Initially, this contains a TextOverlayAnimator showing the "press F1 for help" message.
  - msgOverlay
```
protected final bdv.viewer.animate.MessageOverlayAnimator msgOverlay
```
    Fade-out overlay of recent messages. See showMessage(String).
  - options
```
protected final VolumeViewerOptions.Values options
```
- Constructor Detail
  - VolumeViewerPanel
```
public VolumeViewerPanel(List<bdv.viewer.SourceAndConverter<?>> sources,
                         int numTimepoints,
                         bdv.cache.CacheControl cacheControl,
                         VolumeViewerOptions optional)
```
    Parameters:
    
    sources - the sources to display.
    
    numTimepoints - number of available timepoints.
    
    cacheControl - to control IO budgeting and fetcher queue.
    
    optional - optional parameters. See VolumeViewerOptions.
- Method Detail
  - setRenderScene
```
public void setRenderScene(VolumeViewerPanel.RenderScene renderScene)
```
  - addSource
```
@Deprecated
public void addSource(bdv.viewer.SourceAndConverter<?> sourceAndConverter)
```
    Deprecated. Modify state() directly
  - addSources
```
@Deprecated
public void addSources(Collection<bdv.viewer.SourceAndConverter<?>> sourceAndConverter)
```
    Deprecated. Modify state() directly
  - removeSource
```
@Deprecated
public void removeSource(bdv.viewer.Source<?> source)
```
    Deprecated. Modify state() directly
  - removeSources
```
@Deprecated
public void removeSources(Collection<bdv.viewer.Source<?>> sources)
```
    Deprecated. Modify state() directly
  - removeAllSources
```
@Deprecated
public void removeAllSources()
```
    Deprecated. Modify state() directly
  - addGroup
```
@Deprecated
public void addGroup(bdv.viewer.state.SourceGroup group)
```
    Deprecated. Modify state() directly
  - removeGroup
```
@Deprecated
public void removeGroup(bdv.viewer.state.SourceGroup group)
```
    Deprecated. Modify state() directly
  - displayToGlobalCoordinates
```
public void displayToGlobalCoordinates(double[] gPos)
```
    Set gPos to the display coordinates at gPos transformed into the global coordinate system.
    
    Parameters:
    
    gPos - is set to the corresponding global coordinates.
  - displayToGlobalCoordinates
```
public <P extends net.imglib2.RealLocalizable & net.imglib2.RealPositionable> void displayToGlobalCoordinates(P gPos)
```
    Set gPos to the display coordinates at gPos transformed into the global coordinate system.
    
    Parameters:
    
    gPos - is set to the corresponding global coordinates.
  - displayToGlobalCoordinates
```
public void displayToGlobalCoordinates(double x,
                                       double y,
                                       net.imglib2.RealPositionable gPos)
```
    Set gPos to the display coordinates (x,y,0)^T transformed into the global coordinate system.
    
    Parameters:
    
    gPos - is set to the global coordinates at display (x,y,0)^T.
  - paint
```
public void paint()
```
    Specified by:
    
    paint in interface bdv.viewer.render.PainterThread.Paintable
  - requestRepaint
```
public void requestRepaint()
```
    Repaint as soon as possible.
    
    Specified by:
    
    requestRepaint in interface bdv.viewer.RequestRepaint
  - requestRepaint
```
public void requestRepaint(VolumeRenderer.RepaintType type)
```
  - onMouseMoved
```
protected void onMouseMoved()
```
    Overrides:
    
    onMouseMoved in class bdv.viewer.AbstractViewerPanel
  - drawOverlays
```
public void drawOverlays(Graphics g)
```
    Specified by:
    
    drawOverlays in interface bdv.viewer.OverlayRenderer
  - viewerStateChanged
```
public void viewerStateChanged(bdv.viewer.ViewerStateChange change)
```
    Specified by:
    
    viewerStateChanged in interface bdv.viewer.ViewerStateChangeListener
  - setTransformAnimator
```
public void setTransformAnimator(bdv.viewer.animate.AbstractTransformAnimator animator)
```
    Specified by:
    
    setTransformAnimator in class bdv.viewer.AbstractViewerPanel
  - setDisplayMode
```
public void setDisplayMode(bdv.viewer.DisplayMode displayMode)
```
    Set the DisplayMode.
  - setCurrentViewerTransform
```
@Deprecated
public void setCurrentViewerTransform(net.imglib2.realtransform.AffineTransform3D viewerTransform)
```
    Deprecated. Modify state() directly (state().setViewerTransform(t))
  - setTimepoint
```
public void setTimepoint(int timepoint)
```
    Show the specified time-point.
    
    Parameters:
    
    timepoint - time-point index.
  - nextTimePoint
```
public void nextTimePoint()
```
    Show the next time-point.
  - previousTimePoint
```
public void previousTimePoint()
```
    Show the previous time-point.
  - setNumTimepoints
```
public void setNumTimepoints(int numTimepoints)
```
    Set the number of available timepoints. If numTimepoints == 1 this will hide the time slider, otherwise show it. If the currently displayed timepoint would be out of range with the new number of timepoints, the current timepoint is set to numTimepoints - 1.
    This is equivalent to state().setNumTimepoints(numTimepoints}.
    
    Parameters:
    
    numTimepoints - number of available timepoints. Must be >= 1.
  - getState
```
@Deprecated
public bdv.viewer.state.ViewerState getState()
```
    Deprecated. Use state() instead. Get a copy of the current ViewerState.
    
    Returns:
    
    a copy of the current ViewerState.
  - state
```
public bdv.viewer.SynchronizedViewerState state()
```
    Get the ViewerState. This can be directly used for modifications, e.g., adding/removing sources etc. See SynchronizedViewerState for thread-safety considerations.
    
    Specified by:
    
    state in class bdv.viewer.AbstractViewerPanel
  - getDisplay
```
public InteractiveGLDisplayCanvas<?> getDisplay()
```
    Get the viewer canvas.
    
    Specified by:
    
    getDisplay in class bdv.viewer.AbstractViewerPanel
    
    Returns:
    
    the viewer canvas.
  - getDisplayComponent
```
public Component getDisplayComponent()
```
    Get the AWT Component of the viewer canvas.
    
    Specified by:
    
    getDisplayComponent in class bdv.viewer.AbstractViewerPanel
    
    Returns:
    
    the viewer canvas.
  - getTransformEventHandler
```
public bdv.TransformEventHandler getTransformEventHandler()
```
  - getConverterSetups
```
public bdv.viewer.ConverterSetups getConverterSetups()
```
  - showMessage
```
public void showMessage(String msg)
```
    Display the specified message in a text overlay for a short time.
    
    Specified by:
    
    showMessage in class bdv.viewer.AbstractViewerPanel
    
    Parameters:
    
    msg - String to display. Should be just one line of text.
  - addOverlayAnimator
```
public void addOverlayAnimator(bdv.viewer.animate.OverlayAnimator animator)
```
    Add a new OverlayAnimator to the list of animators. The animation is immediately started. The new OverlayAnimator will remain in the list of animators until it OverlayAnimator.isComplete().
    
    Specified by:
    
    addOverlayAnimator in class bdv.viewer.AbstractViewerPanel
    
    Parameters:
    
    animator - animator to add.
  - transformListeners
```
public org.scijava.listeners.Listeners<bdv.viewer.TransformListener<net.imglib2.realtransform.AffineTransform3D>> transformListeners()
```
    Add/remove TransformListeners to notify about viewer transformation changes. Listeners will be notified before calling requestRepaint() so they have the chance to interfere.
    
    Specified by:
    
    transformListeners in class bdv.viewer.AbstractViewerPanel
  - renderTransformListeners
```
public org.scijava.listeners.Listeners<bdv.viewer.TransformListener<net.imglib2.realtransform.AffineTransform3D>> renderTransformListeners()
```
    Add/remove TransformListeners to notify about viewer transformation changes. Listeners will be notified when a new image is painted with the viewer transform used to render that image.
    
    Specified by:
    
    renderTransformListeners in class bdv.viewer.AbstractViewerPanel
  - addTimePointListener
```
public void addTimePointListener(bdv.viewer.TimePointListener listener)
```
    Add a TimePointListener to notify about time-point changes. Listeners will be notified before calling requestRepaint() so they have the chance to interfere.
    
    Parameters:
    
    listener - the listener to add.
  - addTimePointListener
```
public void addTimePointListener(bdv.viewer.TimePointListener listener,
                                 int index)
```
    Add a TimePointListener to notify about time-point changes. Listeners will be notified before calling requestRepaint() so they have the chance to interfere.
    
    Parameters:
    
    listener - the listener to add.
    
    index - position in the list of listeners at which to insert this one.
  - removeTimePointListener
```
public void removeTimePointListener(bdv.viewer.TimePointListener listener)
```
    Remove a TimePointListener.
    
    Parameters:
    
    listener - the listener to remove.
  - setCamParams
```
public void setCamParams(double dCam,
                         double dClip)
```
  - setCamParams
```
public void setCamParams(double dCam,
                         double dClipNear,
                         double dClipFar)
```
  - setMaxAllowedStepInVoxels
```
public void setMaxAllowedStepInVoxels(double maxAllowedStepInVoxels)
```
  - setCanvasSize
```
public void setCanvasSize(int width,
                          int height)
```
    Specified by:
    
    setCanvasSize in interface bdv.viewer.OverlayRenderer
  - stateToXml
```
public org.jdom2.Element stateToXml()
```
  - stateFromXml
```
public void stateFromXml(org.jdom2.Element parent)
```
  - getVisibilityAndGrouping
```
@Deprecated
public bdv.viewer.VisibilityAndGrouping getVisibilityAndGrouping()
```
    Deprecated. Modify state() directly Returns the VisibilityAndGrouping that can be used to modify visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
  - getOptionValues
```
public VolumeViewerOptions.Values getOptionValues()
```
  - getInputTriggerConfig
```
public org.scijava.ui.behaviour.io.InputTriggerConfig getInputTriggerConfig()
```
    Specified by:
    
    getInputTriggerConfig in class bdv.viewer.AbstractViewerPanel
  - getSourceInfoOverlayRenderer
```
public bdv.viewer.overlay.SourceInfoOverlayRenderer getSourceInfoOverlayRenderer()
```
  - stop
```
public void stop()
```
    Stop the painterThread.

Class VolumeViewerPanel

Nested Class Summary

Nested classes/interfaces inherited from class bdv.viewer.AbstractViewerPanel

Nested classes/interfaces inherited from class javax.swing.JPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class bdv.viewer.AbstractViewerPanel

Fields inherited from class javax.swing.JComponent

Fields inherited from class java.awt.Component

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class bdv.viewer.AbstractViewerPanel

Methods inherited from class javax.swing.JPanel

Methods inherited from class javax.swing.JComponent

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Field Detail

cacheControl

sceneBuf

offscreen

maxRenderMillis

state

renderer

display

sliderTime

threadGroup

painterThread

visibilityAndGrouping

timePointListeners

currentAnimator

overlayAnimators

msgOverlay

options

Constructor Detail

VolumeViewerPanel

Method Detail

setRenderScene

addSource

addSources

removeSource

removeSources

removeAllSources

addGroup

removeGroup

displayToGlobalCoordinates

displayToGlobalCoordinates

displayToGlobalCoordinates

paint

requestRepaint

requestRepaint

onMouseMoved

drawOverlays

viewerStateChanged

setTransformAnimator

setDisplayMode

setCurrentViewerTransform

setTimepoint

nextTimePoint

previousTimePoint

setNumTimepoints

getState

state

getDisplay

getDisplayComponent

getTransformEventHandler

getConverterSetups

showMessage

addOverlayAnimator

transformListeners

renderTransformListeners

addTimePointListener

addTimePointListener

removeTimePointListener

setCamParams

setCamParams

setMaxAllowedStepInVoxels