bdv.spimdata.tools

Class MergePartitionList

java.lang.Object

bdv.spimdata.tools.MergePartitionList

public class MergePartitionList
extends Object

Constructor Summary

Constructors

Constructor and Description
MergePartitionList()

Method Summary

Modifier and Type	Method and Description
static Hdf5ImageLoader	getHdf5ImageLoader(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq) Get the Hdf5ImageLoader of a AbstractSequenceDescription, or throw an exception if the sequence doesn't have an Hdf5ImageLoader.
static Map<Integer,ExportMipmapInfo>	getHdf5PerSetupExportMipmapInfos(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq) Return map from setup id to ExportMipmapInfo for the Hdf5ImageLoader of the specified AbstractSequenceDescription.
static ArrayList<Partition>	getMergedHdf5PartitionList(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq1, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq2)
static ArrayList<Partition>	getPartitions(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq) Get the Partition list for the Hdf5ImageLoader of the specified AbstractSequenceDescription.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MergePartitionList

public MergePartitionList()

Method Detail

getMergedHdf5PartitionList

public static ArrayList<Partition> getMergedHdf5PartitionList(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq1,
                                                              mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq2)

getHdf5PerSetupExportMipmapInfos

public static Map<Integer,ExportMipmapInfo> getHdf5PerSetupExportMipmapInfos(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq)
                                                                      throws IllegalArgumentException

Return map from setup id to ExportMipmapInfo for the Hdf5ImageLoader of the specified AbstractSequenceDescription.

Parameters:

seq - a sequence.

Returns:

map from setup id to ExportMipmapInfo.

Throws:

IllegalArgumentException - if the specified AbstractSequenceDescription does not have an Hdf5ImageLoader.

getPartitions

public static ArrayList<Partition> getPartitions(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq)
                                          throws IllegalArgumentException

Get the Partition list for the Hdf5ImageLoader of the specified AbstractSequenceDescription. If the dataset is not partitioned, a single partition containing the full dataset is created.

Parameters:

seq - a sequence.

Returns:

partition list of the specified sequence.

Throws:

IllegalArgumentException - if the specified AbstractSequenceDescription does not have an Hdf5ImageLoader.

getHdf5ImageLoader

public static Hdf5ImageLoader getHdf5ImageLoader(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq)
                                          throws IllegalArgumentException

Get the Hdf5ImageLoader of a AbstractSequenceDescription, or throw an exception if the sequence doesn't have an Hdf5ImageLoader.

Parameters:

seq - a sequence.

Returns:

the Hdf5ImageLoader of the sequence.

Throws:

IllegalArgumentException - if the specified AbstractSequenceDescription does not have an Hdf5ImageLoader.