| Package | Description |
|---|---|
| bdv | |
| bdv.export | |
| bdv.export.n5 | |
| bdv.tools |
| Modifier and Type | Method and Description |
|---|---|
static BigDataViewer |
BigDataViewer.open(mpicbg.spim.data.generic.AbstractSpimData<?> spimData,
String windowTitle,
ProgressWriter progressWriter,
ViewerOptions options) |
static BigDataViewer |
BigDataViewer.open(ArrayList<ConverterSetup> converterSetups,
ArrayList<SourceAndConverter<?>> sources,
int numTimepoints,
CacheControl cache,
String windowTitle,
ProgressWriter progressWriter,
ViewerOptions options) |
static BigDataViewer |
BigDataViewer.open(String xmlFilename,
String windowTitle,
ProgressWriter progressWriter,
ViewerOptions options) |
| Constructor and Description |
|---|
BigDataViewer(ArrayList<ConverterSetup> converterSetups,
ArrayList<SourceAndConverter<?>> sources,
mpicbg.spim.data.generic.AbstractSpimData<?> spimData,
int numTimepoints,
CacheControl cache,
String windowTitle,
ProgressWriter progressWriter,
ViewerOptions options)
Deprecated.
|
BigDataViewer(List<ConverterSetup> converterSetups,
List<SourceAndConverter<?>> sources,
mpicbg.spim.data.generic.AbstractSpimData<?> spimData,
int numTimepoints,
CacheControl cache,
String windowTitle,
ProgressWriter progressWriter,
ViewerOptions options) |
| Modifier and Type | Class and Description |
|---|---|
class |
ProgressWriterConsole |
class |
ProgressWriterNull |
class |
SubTaskProgressWriter |
| Modifier and Type | Field and Description |
|---|---|
protected ProgressWriter |
SubTaskProgressWriter.progressWriter |
| Modifier and Type | Method and Description |
|---|---|
static void |
WriteSequenceToHdf5.writeHdf5File(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq,
int[][] resolutions,
int[][] subdivisions,
boolean deflate,
File hdf5File,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Create a hdf5 file containing image data from all views and all
timepoints in a chunked, mipmaped representation.
|
static void |
WriteSequenceToHdf5.writeHdf5File(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq,
Map<Integer,ExportMipmapInfo> perSetupMipmapInfo,
boolean deflate,
File hdf5File,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Create a hdf5 file containing image data from all views and all
timepoints in a chunked, mipmaped representation.
|
static void |
WriteSequenceToHdf5.writeHdf5PartitionFile(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq,
Map<Integer,ExportMipmapInfo> perSetupMipmapInfo,
boolean deflate,
Partition partition,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Create a hdf5 partition file containing image data for a subset of views
and timepoints in a chunked, mipmaped representation.
|
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>,D> |
ExportScalePyramid.writeScalePyramid(net.imglib2.RandomAccessibleInterval<T> img,
T type,
ExportMipmapInfo mipmapInfo,
ExportScalePyramid.DatasetIO<D,T> io,
ExecutorService executorService,
int numThreads,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
ProgressWriter progressWriter)
Write an image to a chunked mipmap representation.
|
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> |
WriteSequenceToHdf5.writeViewToHdf5PartitionFile(net.imglib2.RandomAccessibleInterval<T> img,
T type,
int timepointIdPartition,
int setupIdPartition,
ExportMipmapInfo mipmapInfo,
boolean writeMipmapInfo,
boolean deflate,
bdv.export.Hdf5BlockWriterThread writerQueue,
ExecutorService executorService,
int numThreads,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
ProgressWriter progressWriter)
Write a single view to a hdf5 partition file, in a chunked, mipmaped
representation.
|
static void |
WriteSequenceToHdf5.writeViewToHdf5PartitionFile(net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.integer.UnsignedShortType> img,
int timepointIdPartition,
int setupIdPartition,
ExportMipmapInfo mipmapInfo,
boolean writeMipmapInfo,
boolean deflate,
bdv.export.Hdf5BlockWriterThread writerQueue,
ExecutorService executorService,
int numThreads,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
ProgressWriter progressWriter)
Deprecated.
|
static void |
WriteSequenceToHdf5.writeViewToHdf5PartitionFile(net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.integer.UnsignedShortType> img,
Partition partition,
int timepointIdPartition,
int setupIdPartition,
ExportMipmapInfo mipmapInfo,
boolean writeMipmapInfo,
boolean deflate,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Deprecated.
|
| Constructor and Description |
|---|
SubTaskProgressWriter(ProgressWriter progressWriter,
double startCompletionRatio,
double endCompletionRatio) |
| Modifier and Type | Method and Description |
|---|---|
static void |
WriteSequenceToN5.writeN5File(mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> seq,
Map<Integer,ExportMipmapInfo> perSetupMipmapInfo,
org.janelia.saalfeldlab.n5.Compression compression,
File n5File,
ExportScalePyramid.LoopbackHeuristic loopbackHeuristic,
ExportScalePyramid.AfterEachPlane afterEachPlane,
int numCellCreatorThreads,
ProgressWriter progressWriter)
Create a n5 group containing image data from all views and all
timepoints in a chunked, mipmaped representation.
|
| Constructor and Description |
|---|
RecordMaxProjectionDialog(Frame owner,
ViewerPanel viewer,
ProgressWriter progressWriter) |
RecordMovieDialog(Frame owner,
ViewerPanel viewer,
ProgressWriter progressWriter) |
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