Serialized Form
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Package bdv.img.openconnectome
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Class bdv.img.openconnectome.OpenConnectomeDataset extends Object implements Serializable
- serialVersionUID:
- 7020249341572881545L
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Serialized Fields
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cube_dimension
HashMap<String,int[]> cube_dimension
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description
String description
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imagesize
HashMap<String,long[]> imagesize
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neariso_imagesize
HashMap<String,long[]> neariso_imagesize
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neariso_offset
HashMap<String,double[]> neariso_offset
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neariso_voxelres
HashMap<String,long[]> neariso_voxelres
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offset
HashMap<String,double[]> offset
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resolutions
int[] resolutions
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voxelres
HashMap<String,long[]> voxelres
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Class bdv.img.openconnectome.OpenConnectomeProject extends Object implements Serializable
- serialVersionUID:
- 3296461682832630651L
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Class bdv.img.openconnectome.OpenConnectomeTokenInfo extends Object implements Serializable
- serialVersionUID:
- -560051267067033900L
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Serialized Fields
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dataset
OpenConnectomeDataset dataset
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project
OpenConnectomeProject project
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Package bdv.tools
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Class bdv.tools.DelayedPackDialog extends JDialog implements Serializable
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Serialized Fields
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packIsPending
boolean packIsPending
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Class bdv.tools.HelpDialog extends DelayedPackDialog implements Serializable
- serialVersionUID:
- 1L
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Class bdv.tools.PreferencesDialog extends JDialog implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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settingsPanel
SettingsPanel settingsPanel
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Class bdv.tools.RecordMaxProjectionDialog extends DelayedPackDialog implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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maxTimepoint
int maxTimepoint
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pathTextField
JTextField pathTextField
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progressWriter
ProgressWriter progressWriter
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spinnerHeight
JSpinner spinnerHeight
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spinnerMaxTimepoint
JSpinner spinnerMaxTimepoint
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spinnerMinTimepoint
JSpinner spinnerMinTimepoint
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spinnerNumSteps
JSpinner spinnerNumSteps
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spinnerStepSize
JSpinner spinnerStepSize
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spinnerWidth
JSpinner spinnerWidth
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viewer
ViewerPanel viewer
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Class bdv.tools.RecordMovieDialog extends DelayedPackDialog implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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maxTimepoint
int maxTimepoint
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pathTextField
JTextField pathTextField
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progressWriter
ProgressWriter progressWriter
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spinnerHeight
JSpinner spinnerHeight
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spinnerMaxTimepoint
JSpinner spinnerMaxTimepoint
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spinnerMinTimepoint
JSpinner spinnerMinTimepoint
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spinnerWidth
JSpinner spinnerWidth
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viewer
ViewerPanel viewer
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Class bdv.tools.ToggleDialogAction extends org.scijava.ui.behaviour.util.AbstractNamedAction implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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dialog
Dialog dialog
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Class bdv.tools.VisibilityAndGroupingDialog extends DelayedPackDialog implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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groupingPanel
VisibilityAndGroupingDialog.GroupingPanel groupingPanel
Deprecated. -
modePanel
VisibilityAndGroupingDialog.ModePanel modePanel
Deprecated. -
visibilityPanel
VisibilityAndGroupingDialog.VisibilityPanel visibilityPanel
Deprecated.
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Class bdv.tools.VisibilityAndGroupingDialog.GroupingPanel extends JPanel implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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currentButtonsMap
Map<SourceGroup,JRadioButton> currentButtonsMap
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isVisible
BooleanSupplier isVisible
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recreateContentPending
AtomicBoolean recreateContentPending
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state
ViewerState state
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updateActiveBoxes
ArrayList<Consumer<Set<SourceGroup>>> updateActiveBoxes
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updateAssignBoxes
ArrayList<Runnable> updateAssignBoxes
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updateCurrentGroupPending
AtomicBoolean updateCurrentGroupPending
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updateGroupActivityPending
AtomicBoolean updateGroupActivityPending
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updateGroupAssignmentsPending
AtomicBoolean updateGroupAssignmentsPending
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updateGroupNamesPending
AtomicBoolean updateGroupNamesPending
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updateNames
ArrayList<Runnable> updateNames
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Class bdv.tools.VisibilityAndGroupingDialog.ModePanel extends JPanel implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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fusedModeBox
JCheckBox fusedModeBox
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groupingBox
JCheckBox groupingBox
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isVisible
BooleanSupplier isVisible
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state
ViewerState state
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updatePending
AtomicBoolean updatePending
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Class bdv.tools.VisibilityAndGroupingDialog.VisibilityPanel extends JPanel implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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currentButtonsMap
Map<SourceAndConverter<?>,JRadioButton> currentButtonsMap
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isVisible
BooleanSupplier isVisible
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recreateContentPending
AtomicBoolean recreateContentPending
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state
ViewerState state
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updateActiveBoxes
ArrayList<Consumer<Set<SourceAndConverter<?>>>> updateActiveBoxes
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updatePending
AtomicBoolean updatePending
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updateVisibleBoxes
ArrayList<Consumer<Set<SourceAndConverter<?>>>> updateVisibleBoxes
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Package bdv.tools.boundingbox
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Class bdv.tools.boundingbox.AbstractTransformedBoxSelectionDialog extends JDialog implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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buttons
AbstractTransformedBoxSelectionDialog.OkCancelPanel buttons
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monitor
Object monitor
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result
R result
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Class bdv.tools.boundingbox.AbstractTransformedBoxSelectionDialog.OkCancelPanel extends JPanel implements Serializable
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Class bdv.tools.boundingbox.AbstractTransformedBoxSelectionDialog.TimepointSelectionPanel extends JPanel implements Serializable
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Serialized Fields
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mode
BoxSelectionOptions.TimepointSelection mode
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timeRange
BoundedInterval timeRange
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timeValue
BoundedValue timeValue
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Class bdv.tools.boundingbox.BoundingBoxDialog extends JDialog implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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boxConverterSetup
RealARGBColorConverterSetup boxConverterSetup
Deprecated. -
boxOverlay
TransformedBoxOverlay boxOverlay
Deprecated. -
boxRealRandomAccessible
BoxRealRandomAccessible<net.imglib2.type.numeric.integer.UnsignedShortType> boxRealRandomAccessible
Deprecated. -
boxSelectionPanel
BoxSelectionPanel boxSelectionPanel
Deprecated. -
boxSourceAndConverter
SourceAndConverter<net.imglib2.type.numeric.integer.UnsignedShortType> boxSourceAndConverter
Deprecated. -
contentCreated
boolean contentCreated
Deprecated. -
interval
ModifiableInterval interval
Deprecated.
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Class bdv.tools.boundingbox.BoxDisplayModePanel extends JPanel implements Serializable
- serialVersionUID:
- 1L
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Class bdv.tools.boundingbox.BoxSelectionPanel extends JPanel implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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cols
int cols
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maxSliderPanels
SliderPanel[] maxSliderPanels
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minSliderPanels
SliderPanel[] minSliderPanels
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n
int n
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ranges
BoundedInterval[] ranges
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selection
BoxSelectionPanel.Box selection
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Class bdv.tools.boundingbox.RealBoxSelectionPanel extends JPanel implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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cols
int cols
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maxSliderPanels
SliderPanelDouble[] maxSliderPanels
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minSliderPanels
SliderPanelDouble[] minSliderPanels
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n
int n
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ranges
BoundedIntervalDouble[] ranges
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selection
RealBoxSelectionPanel.RealBox selection
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Class bdv.tools.boundingbox.TransformedBoxSelectionDialog extends AbstractTransformedBoxSelectionDialog<TransformedBoxSelectionDialog.Result> implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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boxEditor
TransformedBoxEditor boxEditor
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boxSelectionPanel
BoxSelectionPanel boxSelectionPanel
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content
JPanel content
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model
TransformedBoxModel model
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options
BoxSelectionOptions options
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timepointSelectionPanel
AbstractTransformedBoxSelectionDialog.TimepointSelectionPanel timepointSelectionPanel
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viewer
AbstractViewerPanel viewer
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Class bdv.tools.boundingbox.TransformedRealBoxSelectionDialog extends AbstractTransformedBoxSelectionDialog<TransformedRealBoxSelectionDialog.Result> implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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boxEditor
TransformedBoxEditor boxEditor
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boxSelectionPanel
RealBoxSelectionPanel boxSelectionPanel
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content
JPanel content
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model
TransformedRealBoxModel model
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options
BoxSelectionOptions options
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timepointSelectionPanel
AbstractTransformedBoxSelectionDialog.TimepointSelectionPanel timepointSelectionPanel
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viewer
AbstractViewerPanel viewer
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Package bdv.tools.brightness
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Class bdv.tools.brightness.BrightnessDialog extends DelayedPackDialog implements Serializable
- serialVersionUID:
- 7963632306732311403L
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Class bdv.tools.brightness.BrightnessDialog.ColorsPanel extends JPanel implements Serializable
- serialVersionUID:
- 6408468837346789676L
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Serialized Fields
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buttons
ArrayList<JButton> buttons
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colorChooser
JColorChooser colorChooser
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setupAssignments
SetupAssignments setupAssignments
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Class bdv.tools.brightness.BrightnessDialog.MinMaxPanel extends JPanel implements Serializable
- serialVersionUID:
- -5209143847804383789L
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Serialized Fields
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boxes
ArrayList<JCheckBox> boxes
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hideAdvanced
Runnable hideAdvanced
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isShowingAdvanced
boolean isShowingAdvanced
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minMaxGroup
MinMaxGroup minMaxGroup
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rememberSizes
boolean rememberSizes
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setupAssignments
SetupAssignments setupAssignments
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showAdvanced
Runnable showAdvanced
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sliders
JPanel sliders
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Class bdv.tools.brightness.BrightnessDialog.MinMaxPanels extends JPanel implements Serializable
- serialVersionUID:
- 6538962298579455010L
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Serialized Fields
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dialog
JDialog dialog
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isShowingAdvanced
boolean isShowingAdvanced
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minMaxPanels
ArrayList<BrightnessDialog.MinMaxPanel> minMaxPanels
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rememberSizes
boolean rememberSizes
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setupAssignments
SetupAssignments setupAssignments
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Class bdv.tools.brightness.SliderPanel extends JPanel implements Serializable
- serialVersionUID:
- 6444334522127424416L
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Serialized Fields
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model
BoundedValue model
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slider
JSlider slider
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spinner
JSpinner spinner
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Class bdv.tools.brightness.SliderPanelDouble extends JPanel implements Serializable
- serialVersionUID:
- 6444334522127424416L
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Serialized Fields
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dmax
double dmax
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dmin
double dmin
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model
BoundedValueDouble model
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rangeListener
SliderPanelDouble.RangeListener rangeListener
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slider
JSlider slider
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spinner
JSpinner spinner
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userDefinedNumberFormat
boolean userDefinedNumberFormat
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Package bdv.tools.crop
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Class bdv.tools.crop.CropDialog extends JDialog implements Serializable
- serialVersionUID:
- 924395364255873920L
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Serialized Fields
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pathTextField
JTextField pathTextField
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sequenceDescription
mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription
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spinnerMaxTimepoint
JSpinner spinnerMaxTimepoint
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spinnerMinTimepoint
JSpinner spinnerMinTimepoint
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viewer
ViewerPanel viewer
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Package bdv.ui.convertersetupeditor
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Class bdv.ui.convertersetupeditor.ConverterSetupEditPanel extends JPanel implements Serializable
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Serialized Fields
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colorPanel
bdv.ui.convertersetupeditor.ColorPanel colorPanel
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rangePanel
bdv.ui.convertersetupeditor.BoundedRangePanel rangePanel
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Package bdv.ui.rangeslider
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Class bdv.ui.rangeslider.RangeSlider extends JSlider implements Serializable
- serialVersionUID:
- 1L
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Package bdv.ui.settings
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Class bdv.ui.settings.SettingsPanel extends JPanel implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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apply
JButton apply
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breadcrumbs
JPanel breadcrumbs
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model
DefaultTreeModel model
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modificationListener
ModificationListener modificationListener
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pages
JPanel pages
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root
DefaultMutableTreeNode root
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runOnCancel
ArrayList<Runnable> runOnCancel
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runOnOk
ArrayList<Runnable> runOnOk
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splitPane
JSplitPane splitPane
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tree
bdv.ui.settings.SettingsPanel.FullWidthSelectionJTree tree
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treeScrollPane
JScrollPane treeScrollPane
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Class bdv.ui.settings.SingleSettingsPanel extends JPanel implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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page
SettingsPage page
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runOnCancel
ArrayList<Runnable> runOnCancel
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runOnOk
ArrayList<Runnable> runOnOk
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Package bdv.ui.sourcegrouptree
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Class bdv.ui.sourcegrouptree.SourceGroupTree extends JTree implements Serializable
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Serialized Fields
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consumeNext
boolean consumeNext
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editor
bdv.ui.sourcegrouptree.SourceGroupEditor editor
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model
SourceGroupTreeModel model
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pressedAt
Point pressedAt
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releasedWhen
long releasedWhen
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renderer
bdv.ui.sourcegrouptree.SourceGroupTreeCellRenderer renderer
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state
ViewerState state
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Class bdv.ui.sourcegrouptree.SourceGroupTree.SourceGroupTreeTransferHandler extends TransferHandler implements Serializable
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Serialized Fields
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state
ViewerState state
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tree
SourceGroupTree tree
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Package bdv.ui.sourcetable
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Class bdv.ui.sourcetable.SourceTable extends JTable implements Serializable
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Serialized Fields
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consumeNext
boolean consumeNext
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converters
SourceToConverterSetupBimap converters
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model
SourceTableModel model
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pressedAt
Point pressedAt
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releasedWhen
long releasedWhen
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selectionActiveBackground
Color selectionActiveBackground
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selectionActiveForeground
Color selectionActiveForeground
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selectionInactiveBackground
Color selectionInactiveBackground
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selectionInactiveForeground
Color selectionInactiveForeground
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state
ViewerState state
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Class bdv.ui.sourcetable.SourceTableModel extends AbstractTableModel implements Serializable
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Serialized Fields
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converters
SourceToConverterSetupBimap converters
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model
bdv.ui.sourcetable.SourceTableModel.StateModel model
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state
ViewerState state
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Package bdv.ui.splitpanel
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Class bdv.ui.splitpanel.SplitPanel extends JSplitPane implements Serializable
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Serialized Fields
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dividerSizeWhenVisible
int dividerSizeWhenVisible
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oneTouchExpandAnimator
bdv.ui.splitpanel.SplitPaneOneTouchExpandAnimator oneTouchExpandAnimator
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scrollPane
JScrollPane scrollPane
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width
int width
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Package bdv.ui.viewermodepanel
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Class bdv.ui.viewermodepanel.DisplaySettingsPanel extends JPanel implements Serializable
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Serialized Fields
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blending
LabeledOptionButton blending
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fusion
bdv.ui.viewermodepanel.LabeledToggleButton fusion
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grouping
bdv.ui.viewermodepanel.LabeledToggleButton grouping
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interpolation
bdv.ui.viewermodepanel.LabeledToggleButton interpolation
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Class bdv.ui.viewermodepanel.LabeledOptionButton extends bdv.ui.viewermodepanel.OptionButton implements Serializable
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Serialized Fields
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label
JLabel label
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Package bdv.viewer
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Class bdv.viewer.AbstractViewerPanel extends JPanel implements Serializable
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Serialized Fields
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mouseCoordinates
AbstractViewerPanel.MouseCoordinateListener mouseCoordinates
Keeps track of the current mouse coordinates, which are used to provide the current global position (seeAbstractViewerPanel.getGlobalMouseCoordinates(RealPositionable)).
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Class bdv.viewer.InteractiveDisplayCanvas extends JComponent implements Serializable
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Serialized Fields
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handler
TransformEventHandler handler
Mouse/Keyboard handler that manipulates the view transformation. -
overlayRenderers
org.scijava.listeners.Listeners.List<OverlayRenderer> overlayRenderers
To draw this component,OverlayRenderer.drawOverlays(java.awt.Graphics)is invoked for each renderer.
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Class bdv.viewer.ViewerFrame extends JFrame implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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appearanceManager
AppearanceManager appearanceManager
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cards
CardPanel cards
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keybindings
org.scijava.ui.behaviour.util.InputActionBindings keybindings
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keymapManager
KeymapManager keymapManager
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splitPanel
SplitPanel splitPanel
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transformBehaviours
org.scijava.ui.behaviour.util.Behaviours transformBehaviours
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triggerbindings
org.scijava.ui.behaviour.util.TriggerBehaviourBindings triggerbindings
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viewer
ViewerPanel viewer
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Class bdv.viewer.ViewerPanel extends AbstractViewerPanel implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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blockSliderTimeEvents
boolean blockSliderTimeEvents
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converterSetups
ConverterSetups converterSetups
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currentAnimator
AtomicReference<AbstractTransformAnimator> currentAnimator
Current animator for viewer transform, or null. This is for example used to make smooth transitions whenaligning to orthogonal planes. -
deprecatedState
ViewerState deprecatedState
Legacy wrapper aroundstateto support deprecated API -
display
InteractiveDisplayCanvas display
Canvas used for displaying the renderedimageand overlays. -
imageRenderer
MultiResolutionRenderer imageRenderer
Renders the current state for theViewerPanel.display. -
interpolationModeListeners
org.scijava.listeners.Listeners.List<InterpolationModeListener> interpolationModeListeners
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msgOverlay
MessageOverlayAnimator msgOverlay
Fade-out overlay of recent messages. SeeViewerPanel.showMessage(String). -
multiBoxOverlayRenderer
MultiBoxOverlayRenderer multiBoxOverlayRenderer
Overlay navigation boxes. -
options
ViewerOptions.Values options
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overlayAnimators
ArrayList<OverlayAnimator> overlayAnimators
A list of currently incomplete (seeOverlayAnimator.isComplete()) animators. Initially, this contains aTextOverlayAnimatorshowing the "press F1 for help" message. -
painterThread
PainterThread painterThread
Thread that triggers repainting of the display. -
renderingExecutorService
ForkJoinPool renderingExecutorService
TheExecutorServiceused for rendereing. -
renderTarget
BufferedImageOverlayRenderer renderTarget
TODO -
scaleBarOverlayRenderer
ScaleBarOverlayRenderer scaleBarOverlayRenderer
Overlay scalebar for current source. -
sliderTime
JSlider sliderTime
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sourceInfoOverlayRenderer
SourceInfoOverlayRenderer sourceInfoOverlayRenderer
Overlay current source name and current timepoint. -
state
SynchronizedViewerState state
Currently rendered state (visible sources, transformation, timepoint, etc.) -
threadGroup
ThreadGroup threadGroup
AThreadGroupfor (only) the threads used by thisViewerPanel, that is,ViewerPanel.painterThreadandViewerPanel.renderingExecutorService. -
timePointListeners
org.scijava.listeners.Listeners.List<TimePointListener> timePointListeners
These listeners will be notified about changes to the current timepointViewerState.getCurrentTimepoint(). This is done before callingViewerPanel.requestRepaint()so listeners have the chance to interfere. -
transformEventHandler
TransformEventHandler transformEventHandler
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transformListeners
org.scijava.listeners.Listeners.List<TransformListener<net.imglib2.realtransform.AffineTransform3D>> transformListeners
These listeners will be notified about changes to the viewer-transform. This is done before callingViewerPanel.requestRepaint()so listeners have the chance to interfere. -
visibilityAndGrouping
VisibilityAndGrouping visibilityAndGrouping
Manages visibility and currentness of sources and groups, as well as grouping of sources, and display mode.
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