Module org.bigdataviewer.core

Package bdv.tools

Class InitializeViewerState

java.lang.Object

bdv.tools.InitializeViewerState

public class InitializeViewerState
extends Object

Constructor Summary

Constructors

Constructor	Description
InitializeViewerState()

Method Summary

Modifier and Type	Method	Description
static Bounds	estimateSourceRange(Source<?> source, int timepoint, double cumulativeMinCutoff, double cumulativeMaxCutoff)
static void	initBrightness(double cumulativeMinCutoff, double cumulativeMaxCutoff, AbstractViewerPanel viewer, SetupAssignments setupAssignments)	Deprecated.
static void	initBrightness(double cumulativeMinCutoff, double cumulativeMaxCutoff, ViewerState state, SetupAssignments setupAssignments)	Deprecated.
static void	initBrightness(double cumulativeMinCutoff, double cumulativeMaxCutoff, ViewerFrame viewerFrame)
static void	initBrightness(double cumulativeMinCutoff, double cumulativeMaxCutoff, ViewerState state, SetupAssignments setupAssignments)	Deprecated.
static void	initBrightness(double cumulativeMinCutoff, double cumulativeMaxCutoff, ViewerState state, ConverterSetups converterSetups)
static net.imglib2.realtransform.AffineTransform3D	initTransform(int viewerWidth, int viewerHeight, boolean zoomedIn, ViewerState state)	Deprecated.
static net.imglib2.realtransform.AffineTransform3D	initTransform(int viewerWidth, int viewerHeight, boolean zoomedIn, ViewerState state)	Get a "good" initial viewer transform.
static void	initTransform(AbstractViewerPanel viewer)	Set a "good" initial viewer transform.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

InitializeViewerState

public InitializeViewerState()

Method Detail

initTransform

public static void initTransform(AbstractViewerPanel viewer)

Set a "good" initial viewer transform. The viewer transform is chosen such that for the first source,

• the XY plane is aligned with the screen plane,
• the z = dim_z / 2 slice is shown,
• centered and scaled such that the full dim_x by dim_y is visible.

This calls initTransform(int, int, boolean, ViewerState), using the size of the viewer's display component.

Parameters:

viewer - the viewer (containing at least one source) to have its transform set.

initTransform

public static net.imglib2.realtransform.AffineTransform3D initTransform(int viewerWidth,
                                                                        int viewerHeight,
                                                                        boolean zoomedIn,
                                                                        ViewerState state)

Get a "good" initial viewer transform. The viewer transform is chosen such that for the first source,

• the XY plane is aligned with the screen plane,
• the z = dim_z / 2 slice is shown,
• centered and scaled such that the full dim_x by dim_y is visible.

Parameters:

viewerWidth - width of the viewer display

viewerHeight - height of the viewer display

state - the ViewerState containing at least one source.

Returns:

proposed initial viewer transform.

initBrightness

public static void initBrightness(double cumulativeMinCutoff,
                                  double cumulativeMaxCutoff,
                                  ViewerFrame viewerFrame)

initBrightness

public static void initBrightness(double cumulativeMinCutoff,
                                  double cumulativeMaxCutoff,
                                  ViewerState state,
                                  ConverterSetups converterSetups)

estimateSourceRange

public static Bounds estimateSourceRange(Source<?> source,
                                         int timepoint,
                                         double cumulativeMinCutoff,
                                         double cumulativeMaxCutoff)

Parameters:

cumulativeMinCutoff - fraction of pixels that are allowed to be saturated at the lower end of the range.

cumulativeMaxCutoff - fraction of pixels that are allowed to be saturated at the upper end of the range.

initTransform

@Deprecated
public static net.imglib2.realtransform.AffineTransform3D initTransform(int viewerWidth,
                                                                        int viewerHeight,
                                                                        boolean zoomedIn,
                                                                        ViewerState state)

Deprecated.

initBrightness

@Deprecated
public static void initBrightness(double cumulativeMinCutoff,
                                  double cumulativeMaxCutoff,
                                  ViewerState state,
                                  SetupAssignments setupAssignments)

Deprecated.

initBrightness

@Deprecated
public static void initBrightness(double cumulativeMinCutoff,
                                  double cumulativeMaxCutoff,
                                  AbstractViewerPanel viewer,
                                  SetupAssignments setupAssignments)

Deprecated.

initBrightness

@Deprecated
public static void initBrightness(double cumulativeMinCutoff,
                                  double cumulativeMaxCutoff,
                                  ViewerState state,
                                  SetupAssignments setupAssignments)

Deprecated.