Module org.bigdataviewer.core

Package bdv.spimdata.tools

Class MergeExample

java.lang.Object

bdv.spimdata.tools.MergeExample

public class MergeExample
extends Object

Author:

Tobias Pietzsch

Constructor Summary

Constructors

Constructor	Description
MergeExample()

Method Summary

Modifier and Type	Method	Description
static void	mergeHdf5ViewsSetups(List<String> inputFilenames, List<mpicbg.spim.data.registration.ViewTransform> transforms, String outputXmlFilename)	Merge multiple HDF5 datasets, where each dataset contains the same timepoints but different views.
static void	mergeHdf5ViewsTimepoints(List<String> inputFilenames, String outputXmlFilename)	Append multiple HDF5 datasets, where each dataset contains the same setups but different timepoints.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MergeExample

public MergeExample()

Method Detail

mergeHdf5ViewsSetups

public static void mergeHdf5ViewsSetups(List<String> inputFilenames,
                                        List<mpicbg.spim.data.registration.ViewTransform> transforms,
                                        String outputXmlFilename)
                                 throws mpicbg.spim.data.SpimDataException

Merge multiple HDF5 datasets, where each dataset contains the same timepoints but different views.

Parameters:

inputFilenames - xml file names for input datasets

transforms - transforms to apply to each input dataset

outputXmlFilename - xml filename into which to store the merged dataset. An HDF5 link master file with the same basename and extension ".h5" will be created that links into the source hdf5s.

Throws:

mpicbg.spim.data.SpimDataException

mergeHdf5ViewsTimepoints

public static void mergeHdf5ViewsTimepoints(List<String> inputFilenames,
                                            String outputXmlFilename)
                                     throws mpicbg.spim.data.SpimDataException

Append multiple HDF5 datasets, where each dataset contains the same setups but different timepoints.

Parameters:

inputFilenames - xml file names for input datasets

outputXmlFilename - xml filename into which to store the merged dataset. An HDF5 link master file with the same basename and extension ".h5" will be created that links into the source hdf5s.

Throws:

mpicbg.spim.data.SpimDataException