Module org.bigdataviewer.core

Package bdv.img.imaris

Class HDF5AccessHack

java.lang.Object

bdv.img.imaris.HDF5AccessHack

All Implemented Interfaces:

IHDF5Access

public class HDF5AccessHack
extends Object
implements IHDF5Access

Constructor Summary

Constructors

Constructor	Description
HDF5AccessHack(ch.systemsx.cisd.hdf5.IHDF5Reader hdf5Reader)

Method Summary

Modifier and Type	Method	Description
protected void	finalize()
DimsAndExistence	getDimsAndExistence(ViewLevelId id)
byte[]	readByteMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min)
byte[]	readByteMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min, byte[] dataBlock)
float[]	readFloatMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min)
float[]	readFloatMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min, float[] dataBlock)
String	readImarisAttributeString(String objectPath, String attributeName)
String	readImarisAttributeString(String objectPath, String attributeName, String defaultValue)
short[]	readShortMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min)
short[]	readShortMDArrayBlockWithOffset(int timepoint, int setup, int level, int[] dimensions, long[] min, short[] dataBlock)

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

HDF5AccessHack

public HDF5AccessHack(ch.systemsx.cisd.hdf5.IHDF5Reader hdf5Reader)
               throws ClassNotFoundException,
                      SecurityException,
                      NoSuchFieldException,
                      IllegalArgumentException,
                      IllegalAccessException

Throws:

ClassNotFoundException

SecurityException

NoSuchFieldException

IllegalArgumentException

IllegalAccessException

Method Detail

getDimsAndExistence

public DimsAndExistence getDimsAndExistence(ViewLevelId id)

Specified by:

getDimsAndExistence in interface IHDF5Access

readByteMDArrayBlockWithOffset

public byte[] readByteMDArrayBlockWithOffset(int timepoint,
                                             int setup,
                                             int level,
                                             int[] dimensions,
                                             long[] min)
                                      throws InterruptedException

Specified by:

readByteMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readByteMDArrayBlockWithOffset

public byte[] readByteMDArrayBlockWithOffset(int timepoint,
                                             int setup,
                                             int level,
                                             int[] dimensions,
                                             long[] min,
                                             byte[] dataBlock)
                                      throws InterruptedException

Specified by:

readByteMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readShortMDArrayBlockWithOffset

public short[] readShortMDArrayBlockWithOffset(int timepoint,
                                               int setup,
                                               int level,
                                               int[] dimensions,
                                               long[] min)
                                        throws InterruptedException

Specified by:

readShortMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readShortMDArrayBlockWithOffset

public short[] readShortMDArrayBlockWithOffset(int timepoint,
                                               int setup,
                                               int level,
                                               int[] dimensions,
                                               long[] min,
                                               short[] dataBlock)
                                        throws InterruptedException

Specified by:

readShortMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readFloatMDArrayBlockWithOffset

public float[] readFloatMDArrayBlockWithOffset(int timepoint,
                                               int setup,
                                               int level,
                                               int[] dimensions,
                                               long[] min)
                                        throws InterruptedException

Specified by:

readFloatMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readFloatMDArrayBlockWithOffset

public float[] readFloatMDArrayBlockWithOffset(int timepoint,
                                               int setup,
                                               int level,
                                               int[] dimensions,
                                               long[] min,
                                               float[] dataBlock)
                                        throws InterruptedException

Specified by:

readFloatMDArrayBlockWithOffset in interface IHDF5Access

Throws:

InterruptedException

readImarisAttributeString

public String readImarisAttributeString(String objectPath,
                                        String attributeName)

Specified by:

readImarisAttributeString in interface IHDF5Access

readImarisAttributeString

public String readImarisAttributeString(String objectPath,
                                        String attributeName,
                                        String defaultValue)

Specified by:

readImarisAttributeString in interface IHDF5Access

finalize

protected void finalize()
                 throws Throwable

Overrides:

finalize in class Object

Throws:

Throwable