Module org.bigdataviewer.core

Package bdv.img.hdf5

Class Util

java.lang.Object

bdv.img.hdf5.Util

public class Util
extends Object

Constructor Summary

Constructors

Constructor	Description
Util()

Method Summary

Modifier and Type	Method	Description
static double[]	castToDoubles(int[] ints)
static double[][]	castToDoubles(int[][] ints)
static int[]	castToInts(double[] doubles)
static int[][]	castToInts(double[][] doubles)
static String	getCellsPath(int timepoint, int setup, int level)
static String	getCellsPath(ViewLevelId viewLevelId)
static String	getCellsPath(mpicbg.spim.data.sequence.ViewId viewId, int level)
static String	getGroupPath(int timepointId, int setupId, int level)
static String	getGroupPath(ViewLevelId viewLevelId)
static String	getGroupPath(mpicbg.spim.data.sequence.ViewId viewId, int level)
static String	getResolutionsPath(int setupId)
static String	getSetupPath(int setupId)
static String	getSubdivisionsPath(int setupId)
static long	memTypeId(org.janelia.saalfeldlab.n5.DataType dataType)
static int[]	reorder(int[] in)	Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5).
static int[]	reorder(int[] in, int[] out)	Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5).
static long[]	reorder(int[] in, long[] out)	Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5).
static long[]	reorder(long[] in)	Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5).
static long[]	reorder(long[] in, long[] out)	Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5).

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Util

public Util()

Method Detail

getGroupPath

public static String getGroupPath(int timepointId,
                                  int setupId,
                                  int level)

getGroupPath

public static String getGroupPath(mpicbg.spim.data.sequence.ViewId viewId,
                                  int level)

getGroupPath

public static String getGroupPath(ViewLevelId viewLevelId)

getCellsPath

public static String getCellsPath(int timepoint,
                                  int setup,
                                  int level)

getCellsPath

public static String getCellsPath(mpicbg.spim.data.sequence.ViewId viewId,
                                  int level)

getCellsPath

public static String getCellsPath(ViewLevelId viewLevelId)

getSetupPath

public static String getSetupPath(int setupId)

getResolutionsPath

public static String getResolutionsPath(int setupId)

getSubdivisionsPath

public static String getSubdivisionsPath(int setupId)

reorder

public static long[] reorder(long[] in,
                             long[] out)

Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5). Permuted in is stored in out and out is returned.

Parameters:

in - column major coordinates

out - row major coordinates

Returns:

out

reorder

public static long[] reorder(long[] in)

Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5).

Parameters:

in - column major coordinates

Returns:

row major coordinates (new array).

reorder

public static int[] reorder(int[] in,
                            int[] out)

Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5). Permuted in is stored in out and out is returned.

Parameters:

in - column major coordinates

out - row major coordinates

Returns:

out

reorder

public static int[] reorder(int[] in)

Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5).

Parameters:

in - column major coordinates

Returns:

row major coordinates (new array).

reorder

public static long[] reorder(int[] in,
                             long[] out)

Reorder long array representing column-major coordinate (imglib2) to row-major (hdf5). Permuted in is stored in out and out is returned.

Parameters:

in - column major coordinates

out - row major coordinates

Returns:

out

castToInts

public static int[] castToInts(double[] doubles)

castToInts

public static int[][] castToInts(double[][] doubles)

castToDoubles

public static double[] castToDoubles(int[] ints)

castToDoubles

public static double[][] castToDoubles(int[][] ints)

memTypeId

public static long memTypeId(org.janelia.saalfeldlab.n5.DataType dataType)