trainableSegmentation

Class Trainable_Segmentation

java.lang.Object

trainableSegmentation.Trainable_Segmentation

All Implemented Interfaces:

ij.plugin.PlugIn

Deprecated.

@Deprecated
public class Trainable_Segmentation
extends Object
implements ij.plugin.PlugIn

Constructor Summary

Constructors

Constructor and Description
Trainable_Segmentation() Deprecated. Basic constructor
Trainable_Segmentation(ij.ImagePlus trainingImage) Deprecated. No GUI constructor

Method Summary

Modifier and Type	Method and Description
ij.ImagePlus	applyClassifier(weka.core.Instances data, int w, int h, int numThreads) Deprecated. Apply current classifier to set of instances
void	applyClassifierToTestData() Deprecated. Apply classifier to test data
ij.ImagePlus	applyClassifierToTestImage(ij.ImagePlus testImage, int numThreads) Deprecated. Apply current classifier to image
void	createProbImgFromTestData() Deprecated. Apply classifier to a set of images and create a multi-channel probability distribution image.
ij.ImagePlus	createProbImgFromTestData(ij.ImagePlus testImage, int numThreads) Deprecated. Create multi-channel probability distribution image from image
weka.core.Instances	createTrainingInstances() Deprecated. Create training instances out of the user markings
ij.ImagePlus	getClassifiedImage() Deprecated. Get current classification result
ij.ImagePlus[]	getClassifierDistribution(weka.core.Instances data, int w, int h, int numThreads) Deprecated. Apply current classifier to set of instances to get a probability distribution.
void	loadTrainingData() Deprecated. Load previously saved data
boolean	loadTrainingData(String pathname) Deprecated. Load training data (no GUI)
weka.core.Instances	readDataFromARFF(String filename) Deprecated. Read ARFF file
void	run(String arg) Deprecated. Plugin run method
void	saveTrainingData() Deprecated. Save training model into a file
boolean	showSettingsDialog() Deprecated. Show advanced settings dialog
void	trainClassifier() Deprecated. Train classifier with the current instances
void	writeDataToARFF(weka.core.Instances data, String filename) Deprecated. Write current instances into an ARFF file

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Trainable_Segmentation

public Trainable_Segmentation()

Deprecated.

Basic constructor

Trainable_Segmentation

public Trainable_Segmentation(ij.ImagePlus trainingImage)

Deprecated.

No GUI constructor

Parameters:

trainingImage - input image

Method Detail

run

public void run(String arg)

Deprecated.

Plugin run method

Specified by:

run in interface ij.plugin.PlugIn

writeDataToARFF

public void writeDataToARFF(weka.core.Instances data,
                            String filename)

Deprecated.

Write current instances into an ARFF file

Parameters:

data - set of instances

filename - ARFF file name

readDataFromARFF

public weka.core.Instances readDataFromARFF(String filename)

Deprecated.

Read ARFF file

Parameters:

filename - ARFF file name

Returns:

set of instances read from the file

createTrainingInstances

public weka.core.Instances createTrainingInstances()

Deprecated.

Create training instances out of the user markings

Returns:

set of instances

trainClassifier

public void trainClassifier()

Deprecated.

Train classifier with the current instances

applyClassifier

public ij.ImagePlus applyClassifier(weka.core.Instances data,
                                    int w,
                                    int h,
                                    int numThreads)

Deprecated.

Apply current classifier to set of instances

Parameters:

data - set of instances

w - image width

h - image height

numThreads - number of threads to create

Returns:

result image

getClassifierDistribution

public ij.ImagePlus[] getClassifierDistribution(weka.core.Instances data,
                                                int w,
                                                int h,
                                                int numThreads)

Deprecated.

Apply current classifier to set of instances to get a probability distribution.

Parameters:

data - set of instances

w - image width

h - image height

numThreads - number of threads to be used

Returns:

result image

applyClassifierToTestData

public void applyClassifierToTestData()

Deprecated.

Apply classifier to test data

createProbImgFromTestData

public void createProbImgFromTestData()

Deprecated.

Apply classifier to a set of images and create a multi-channel probability distribution image.

applyClassifierToTestImage

public ij.ImagePlus applyClassifierToTestImage(ij.ImagePlus testImage,
                                               int numThreads)

Deprecated.

Apply current classifier to image

Parameters:

testImage - test image (2D single image or stack)

Returns:

result image (classification)

createProbImgFromTestData

public ij.ImagePlus createProbImgFromTestData(ij.ImagePlus testImage,
                                              int numThreads)

Deprecated.

Create multi-channel probability distribution image from image

Parameters:

testImage - test image (2D single image or stack)

numThreads - number of threads to be used

Returns:

result image (probability distribution)

loadTrainingData

public void loadTrainingData()

Deprecated.

Load previously saved data

saveTrainingData

public void saveTrainingData()

Deprecated.

Save training model into a file

showSettingsDialog

public boolean showSettingsDialog()

Deprecated.

Show advanced settings dialog

Returns:

false when canceled

loadTrainingData

public boolean loadTrainingData(String pathname)

Deprecated.

Load training data (no GUI)

Parameters:

pathname - complete path name of the training data file (.arff)

Returns:

false if error

getClassifiedImage

public ij.ImagePlus getClassifiedImage()

Deprecated.

Get current classification result

Returns:

classified image