sc.fiji.analyzeSkeleton

Class Edge

java.lang.Object

sc.fiji.analyzeSkeleton.Edge

public class Edge
extends Object

This class represents the edge between two vertices in an undirected graph.

Field Summary

Fields

Modifier and Type	Field and Description
static int	BACK "back" edge classification constant for Depth-first search (DFS)
static int	TREE "tree" edge classification constant for Depth-first search (DFS)
static int	UNDEFINED not yet defined edge classification constant for Depth-first search (DFS)

Constructor Summary

Constructors

Constructor and Description
Edge(Vertex v1, Vertex v2, ArrayList<Point> slabs, double length) Create an edge of specific vertices and list of slab voxels.
Edge(Vertex v1, Vertex v2, ArrayList<Point> slabs, double length, double color3rd, double color, double length_ra) Create an edge of specific vertices and list of slab voxels.

Method Summary

Modifier and Type	Method and Description
Edge	clone(Vertex v1, Vertex v2) Clones the Edge with all its properties
double	getColor()
double	getColor3rd()
double	getLength_ra() Get edge length_ra (running average)
double	getLength() Get edge length
Vertex	getOppositeVertex(Vertex v) Get opposite vertex from a given one.
ArrayList<Point>	getSlabs() Get list of slab voxels belonging to the edge.
int	getType() Get DFS edge type
Vertex	getV1() Get first vertex.
Vertex	getV2() Get second vertex.
void	setColor(double color)
void	setColor3rd(double color)
void	setLength(double length) Set edge length
void	setType(int type) Set DFS type (BACK or TREE)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TREE

public static final int TREE

"tree" edge classification constant for Depth-first search (DFS)

See Also:

Constant Field Values

BACK

public static final int BACK

"back" edge classification constant for Depth-first search (DFS)

See Also:

Constant Field Values

UNDEFINED

public static final int UNDEFINED

not yet defined edge classification constant for Depth-first search (DFS)

See Also:

Constant Field Values

Constructor Detail

Edge

public Edge(Vertex v1,
            Vertex v2,
            ArrayList<Point> slabs,
            double length)

Create an edge of specific vertices and list of slab voxels.

Parameters:

v1 - first vertex

v2 - second vertex

slabs - list of slab voxels

length - calibrated edge length

Edge

public Edge(Vertex v1,
            Vertex v2,
            ArrayList<Point> slabs,
            double length,
            double color3rd,
            double color,
            double length_ra)

Create an edge of specific vertices and list of slab voxels.

Parameters:

v1 - first vertex

v2 - second vertex

slabs - list of slab voxels

length - calibrated edge length

color3rd - average color value of the inner third

color - average color value

length_ra - calibrated edge length calculated with running average ofer 5 Pixel

Method Detail

getV1

public Vertex getV1()

Get first vertex.

Returns:

first vertex of the edge

getV2

public Vertex getV2()

Get second vertex.

Returns:

second vertex of the edge

getSlabs

public ArrayList<Point> getSlabs()

Get list of slab voxels belonging to the edge.

Returns:

list of slab voxels

setType

public void setType(int type)

Set DFS type (BACK or TREE)

Parameters:

type - DFS classification (BACK or TREE)

getType

public int getType()

Get DFS edge type

Returns:

DFS classification type

getOppositeVertex

public Vertex getOppositeVertex(Vertex v)

Get opposite vertex from a given one.

Parameters:

v - input vertex

Returns:

opposite vertex in the edge

setLength

public void setLength(double length)

Set edge length

Parameters:

length - calibrated edge length

getLength

public double getLength()

Get edge length

Returns:

calibrated edge length

getLength_ra

public double getLength_ra()

Get edge length_ra (running average)

Returns:

calibrated edge length (running average)

setColor

public void setColor(double color)

getColor

public double getColor()

setColor3rd

public void setColor3rd(double color)

getColor3rd

public double getColor3rd()

clone

public Edge clone(Vertex v1,
                  Vertex v2)

Clones the Edge with all its properties

NB Does not clone the vertices!

Parameters:

v1 - One endpoint of the edge, can be null

v2 - The other endpoint of the edge, can be null