Uses of Class
ij3d.Content

Packages that use Content

Package	Description
ij3d
ij3d.behaviors
ij3d.gui
isosurface
octree
orthoslice
surfaceplot
voltex

Uses of Content in ij3d

Methods in ij3d that return Content

Modifier and Type	Method and Description
Content	Image3DUniverse.addContent(Content c) Add the specified Content to the universe.
Content	Image3DUniverse.addContent(ij.ImagePlus image, org.jogamp.vecmath.Color3f color, String name, int thresh, boolean[] channels, int resf, int type) Add the specified image as a new Content to the universe.
Content	Image3DUniverse.addContent(ij.ImagePlus image, int type) Add the specified image as a new Content to the universe.
Content	Image3DUniverse.addContent(ij.ImagePlus image, int type, int res) Add the specified image as a new Content to the universe.
Content	Image3DUniverse.addCustomMesh(CustomMesh mesh, String name) Add a custom mesh to the universe.
Content	Image3DUniverse.addCustomMesh(CustomMultiMesh mesh, String name) Add a CustomMultiMesh to the universe.
Content	Image3DUniverse.addIcospheres(List<org.jogamp.vecmath.Point3f> points, org.jogamp.vecmath.Color3f color, int subdivisions, float radius, String name) At every Point3f in @param points, place an icosphere created with @param subdivisions and @param radius.
Content	Image3DUniverse.addLineMesh(List<org.jogamp.vecmath.Point3f> mesh, org.jogamp.vecmath.Color3f color, String name, boolean strips) Add a custom mesh, in particular a line mesh (a set of lines in 3D) to the universe.
Content	Image3DUniverse.addMesh(ij.ImagePlus img) Add a new image as a content, displaying it as an isosurface.
Content	Image3DUniverse.addMesh(ij.ImagePlus image, org.jogamp.vecmath.Color3f color, String name, int threshold, boolean[] channels, int resamplingF) Add a new image as a content, displaying it as an iso-surface.
Content	Image3DUniverse.addMesh(ij.ImagePlus img, int res) Add a new image as a content, displaying it as an isosurface.
Content	Image3DUniverse.addMesh(List<org.jogamp.vecmath.Point3f> mesh, org.jogamp.vecmath.Color3f color, String name, int threshold) Deprecated. This method will not be supported in the future. Use addTriangleMesh instead.
Content	Image3DUniverse.addMesh(List mesh, org.jogamp.vecmath.Color3f color, String name, float scale, int threshold) Deprecated. This method will not be supported in the future. The specified 'scale' will be ignored, and the applied scale will be calculated automatically from the minimum and maximum coordinates of the specified mesh. Use addTriangleMesh instead.
Content	Image3DUniverse.addOrthoslice(ij.ImagePlus image) Add a new image as a content, displaying it as orthoslices.
Content	Image3DUniverse.addOrthoslice(ij.ImagePlus image, org.jogamp.vecmath.Color3f color, String name, int thresh, boolean[] channels, int resamplingF) Add a new image as a content, displaying it as orthoslices.
Content	Image3DUniverse.addOrthoslice(ij.ImagePlus image, int res) Add a new image as a content, displaying it as orthoslices.
Content	Image3DUniverse.addPointMesh(List<org.jogamp.vecmath.Point3f> mesh, org.jogamp.vecmath.Color3f color, float ptsize, String name) Add a custom mesh, in particular a point mesh, to the universe.
Content	Image3DUniverse.addPointMesh(List<org.jogamp.vecmath.Point3f> mesh, org.jogamp.vecmath.Color3f color, String name) Add a custom mesh, in particular a point mesh, to the universe.
Content	Image3DUniverse.addQuadMesh(List<org.jogamp.vecmath.Point3f> mesh, org.jogamp.vecmath.Color3f color, String name) Add a custom mesh, in particular a mesh consisting of quads, to the universe.
Content	Image3DUniverse.addSurfacePlot(ij.ImagePlus image) Add a new image as a content, displaying it as a 2D surface plot.
Content	Image3DUniverse.addSurfacePlot(ij.ImagePlus image, org.jogamp.vecmath.Color3f color, String name, int thresh, boolean[] channels, int resamplingF) Add a new image as a content, displaying it as a 2D surface plot.
Content	Image3DUniverse.addSurfacePlot(ij.ImagePlus image, int res) Add a new image as a content, displaying it as a 2D surface plot.
Content	Image3DUniverse.addTriangleMesh(List<org.jogamp.vecmath.Point3f> mesh, org.jogamp.vecmath.Color3f color, String name) Add a custom mesh, in particular a triangle mesh, to the universe.
Content	Image3DUniverse.addTriangleMesh(List<org.jogamp.vecmath.Point3f> mesh, List<org.jogamp.vecmath.Color3f> colors, String name) Add a custom mesh, in particular a triangle mesh, to the universe.
Content	Image3DUniverse.addVoltex(ij.ImagePlus image) Add a new image as a content, displaying it as a volume rendering.
Content	Image3DUniverse.addVoltex(ij.ImagePlus image, org.jogamp.vecmath.Color3f color, String name, int thresh, boolean[] channels, int resamplingF) Add a new image as a content, displaying it as a volume rendering.
Content	Image3DUniverse.addVoltex(ij.ImagePlus image, int res) Add a new image as a content, displaying it as a volume rendering.
static Content	ContentCreator.createContent(CustomMesh mesh, String name)
Content	Image3DUniverse.createContent(CustomMesh mesh, String name) Create a Content object from the mesh.
static Content	ContentCreator.createContent(CustomMesh mesh, String name, int tp)
static Content	ContentCreator.createContent(CustomMultiMesh node, String name)
Content	Image3DUniverse.createContent(CustomMultiMesh node, String name)
static Content	ContentCreator.createContent(CustomMultiMesh node, String name, int tp)
static Content	ContentCreator.createContent(String name, File file, int type, int resf, int tp, org.jogamp.vecmath.Color3f color, int thresh, boolean[] channels)
static Content	ContentCreator.createContent(String name, ij.ImagePlus[] images, int type, int resf, int tp, org.jogamp.vecmath.Color3f color, int thresh, boolean[] channels)
static Content	ContentCreator.createContent(String name, ij.ImagePlus image, int type)
static Content	ContentCreator.createContent(String name, ij.ImagePlus image, int type, int resf)
static Content	ContentCreator.createContent(String name, ij.ImagePlus image, int type, int resf, int tp)
static Content	ContentCreator.createContent(String name, ij.ImagePlus image, int type, int resf, int tp, org.jogamp.vecmath.Color3f color, int thresh, boolean[] channels)
Content	Image3DUniverse.getContent(String name) Returns the Content with the specified name.
abstract Content	DefaultUniverse.getSelected()
Content	Image3DUniverse.getSelected() Returns the selected Content, or null if none is selected.
Content	SaveSession.readContent(BufferedReader in)

Methods in ij3d that return types with arguments of type Content

Modifier and Type	Method and Description
Collection<Future<Content>>	Image3DUniverse.addContentLater(Collection<Content> cc) Add the specified collection of Content to the universe.
Future<Content>	Image3DUniverse.addContentLater(Content c) Add the specified Content to the universe.
Collection<Future<Content>>	Image3DUniverse.addContentLater(String file)

Methods in ij3d with parameters of type Content

Modifier and Type	Method and Description
void	ViewAdjuster.add(Content c) Add another Content which should be completely visible in the canvas.
Content	Image3DUniverse.addContent(Content c) Add the specified Content to the universe.
Future<Content>	Image3DUniverse.addContentLater(Content c) Add the specified Content to the universe.
void	Executer.adjustLUTs(Content c)
void	Image3DUniverse.adjustView(Content c) Fit the specified content optimally into the canvas.
void	Image3DUniverse.adjustView(Content c, int dir) Fit the specified content optimally into the canvas.
void	Executer.applySurfaceColors(Content c)
void	Executer.applyTransform(Content c)
void	Executer.centerSelected(Content c)
void	Image3DUniverse.centerSelected(Content c) Select the view at the selected Content.
void	Executer.changeChannels(Content c)
void	Executer.changeColor(Content c)
void	Executer.changePointColor(Content c)
void	Executer.changePointSize(Content c)
void	Executer.changeSlices(Content c)
void	Executer.changeThreshold(Content c)
void	Executer.changeTransparency(Content c)
void	RegistrationMenubar.contentAdded(Content c)
void	ContentInstant.contentAdded(Content c)
void	Image3DMenubar.contentAdded(Content c)
void	Content.contentAdded(Content c)
void	ImageWindow3D.contentAdded(Content c)
void	UniverseListener.contentAdded(Content c)
void	RegistrationMenubar.contentChanged(Content c)
void	ContentInstant.contentChanged(Content c)
void	Image3DMenubar.contentChanged(Content c)
void	Content.contentChanged(Content c)
void	ImageWindow3D.contentChanged(Content c)
void	UniverseListener.contentChanged(Content c)
void	Executer.contentProperties(Content c)
void	RegistrationMenubar.contentRemoved(Content c)
void	ContentInstant.contentRemoved(Content c)
void	Image3DMenubar.contentRemoved(Content c)
void	Content.contentRemoved(Content c)
void	ImageWindow3D.contentRemoved(Content c)
void	UniverseListener.contentRemoved(Content c)
void	RegistrationMenubar.contentSelected(Content c)
void	ContentInstant.contentSelected(Content c)
void	Image3DMenubar.contentSelected(Content c)
void	Content.contentSelected(Content c)
void	ImageWindow3D.contentSelected(Content c)
void	UniverseListener.contentSelected(Content c)
void	Executer.delete(Content c)
void	Executer.displayAs(Content c, int type)
void	RegistrationMenubar.doRegistration(Content templ, Content model)
void	Executer.exportTransformed(Content c)
void	Executer.fill(Content c)
void	DefaultUniverse.fireContentAdded(Content c) Invokes the contentAdded() method of all registered UniverseListeners.
void	DefaultUniverse.fireContentChanged(Content c) Invokes the contentChanged() method of all registered UniverseListeners.
void	DefaultUniverse.fireContentRemoved(Content c) Invokes the contentRemoved() method of all registered UniverseListeners.
void	DefaultUniverse.fireContentSelected(Content c) Invokes the contentSelected() method of all registered UniverseListeners.
void	Executer.fitViewToContent(Content c)
void	Executer.loadPointList(Content c)
void	Image3DUniverse.recalculateGlobalMinMax(Content c) If the specified Content is the only content in the universe, global minimum, maximum and center point are set accordingly to this Content.
void	Executer.resetTransform(Content c)
void	Executer.savePointList(Content c)
void	Executer.saveTransform(Content c)
void	Image3DUniverse.select(Content c) Select the specified Content.
void	Executer.setLocked(Content c, boolean b)
void	Executer.setSaturatedVolumeRendering(Content c, boolean b)
void	Executer.setShaded(Content c, boolean b)
void	Executer.setTransform(Content c)
void	Executer.showBoundingBox(Content c, boolean b)
void	Executer.showContent(Content c, boolean b)
void	Executer.showCoordinateSystem(Content c, boolean b)
void	Executer.showPointList(Content c, boolean b)
void	Executer.smoothMesh(Content c)
void	Executer.updateVolume(Content c)

Method parameters in ij3d with type arguments of type Content

Modifier and Type	Method and Description
void	ViewAdjuster.addCenterOf(Iterable<Content> contents) Make sure that the average center of all contents is visible in the canvas.
Collection<Future<Content>>	Image3DUniverse.addContentLater(Collection<Content> cc) Add the specified collection of Content to the universe.
void	Image3DUniverse.adjustView(Iterable<Content> contents) Fit the specified contents optimally into the canvas.
void	Image3DUniverse.adjustView(Iterable<Content> contents, int dir) Fit the specified contents optimally into the canvas.

Uses of Content in ij3d.behaviors

Methods in ij3d.behaviors that return Content

Modifier and Type	Method and Description
Content	Picker.getPickedContent(int x, int y) Get the Content at the specified canvas position

Methods in ij3d.behaviors with parameters of type Content

Modifier and Type	Method and Description
void	Picker.addPoint(Content c, int x, int y) Adds a landmark point specfied by the canvas position
void	Picker.addPoint(Content c, MouseEvent e) Adds a landmark point specfied by the position of the MouseEvent.
void	Picker.deletePoint(Content c, MouseEvent e) Deletes a landmark point of the specified Content at the given mouse position
List<Map.Entry<org.jogamp.vecmath.Point3d,Float>>	Picker.getPickPointColumn(Content c, int x, int y)
org.jogamp.vecmath.Point3d	Picker.getPickPointGeometry(Content c, int x, int y) Get the picked point, using geometry picking, for the specified canvas position.
org.jogamp.vecmath.Point3d	Picker.getPickPointGeometry(Content c, MouseEvent e) Get the picked point, using geometry picking, for the specified canvas position.
org.jogamp.vecmath.Point3d	Picker.getPickPointGeometry(Content c, org.jogamp.vecmath.Point3d origin, org.jogamp.vecmath.Vector3d dir) Get the picked point using geometry picking.
void	ContentTransformer.init(Content c, int x, int y) This method should be called to initiate a new transformation, e.g. when the mouse is pressed before rotation or translation.
void	Picker.movePoint(Content c, MouseEvent e) Moves the picked landmark point to the position specified by the MouseEvent.

Uses of Content in ij3d.gui

Methods in ij3d.gui that return Content

Modifier and Type	Method and Description
Content	ContentCreatorDialog.showDialog(Image3DUniverse univ, ij.ImagePlus imp, File fi)

Uses of Content in isosurface

Methods in isosurface with parameters of type Content

Modifier and Type	Method and Description
static Set<CustomTriangleMesh>	SmoothControl.findMeshes(Content content)

Constructors in isosurface with parameters of type Content

Constructor and Description
MeshGroup(Content c)

Uses of Content in octree

Methods in octree with parameters of type Content

Modifier and Type	Method and Description
void	VolumeOctree.contentAdded(Content c)
void	VolumeOctree.contentChanged(Content c)
void	VolumeOctree.contentRemoved(Content c)
void	VolumeOctree.contentSelected(Content c)

Uses of Content in orthoslice

Constructors in orthoslice with parameters of type Content

Constructor and Description
MultiOrthoGroup(Content c) Construct a MultiOrthoGroup from the given Content.
OrthoGroup(Content c) Construct a OrthoGroup from the given Content.

Uses of Content in surfaceplot

Constructors in surfaceplot with parameters of type Content

Constructor and Description
SurfacePlotGroup(Content c) Constructs a surface plot for the given ContentInstant.

Uses of Content in voltex

Constructors in voltex with parameters of type Content

Constructor and Description
VoltexGroup(Content c) Initialize this VoltexGroup with the specified Content.