ij3d

Class ContentInstant

java.lang.Object

org.jogamp.java3d.SceneGraphObject

org.jogamp.java3d.Node

org.jogamp.java3d.Group

org.jogamp.java3d.BranchGroup

ij3d.ContentInstant

All Implemented Interfaces:

ContentConstants, UniverseListener

public class ContentInstant
extends org.jogamp.java3d.BranchGroup
implements UniverseListener, ContentConstants

Field Summary

Fields

Modifier and Type	Field and Description
protected int[]	aLUT
protected int[]	bLUT
protected boolean[]	channels
protected org.jogamp.vecmath.Color3f	color
protected int[]	gLUT
protected ij.ImagePlus	image
protected org.jogamp.java3d.TransformGroup	localRotate
protected org.jogamp.java3d.TransformGroup	localTranslate
protected int	resamplingF
protected int[]	rLUT
protected boolean	selected
protected boolean	shaded
protected int	threshold
protected float	transparency
protected int	type

Fields inherited from class org.jogamp.java3d.BranchGroup

ALLOW_DETACH

Fields inherited from class org.jogamp.java3d.Group

ALLOW_CHILDREN_EXTEND, ALLOW_CHILDREN_READ, ALLOW_CHILDREN_WRITE, ALLOW_COLLISION_BOUNDS_READ, ALLOW_COLLISION_BOUNDS_WRITE

Fields inherited from class org.jogamp.java3d.Node

ALLOW_AUTO_COMPUTE_BOUNDS_READ, ALLOW_AUTO_COMPUTE_BOUNDS_WRITE, ALLOW_BOUNDS_READ, ALLOW_BOUNDS_WRITE, ALLOW_COLLIDABLE_READ, ALLOW_COLLIDABLE_WRITE, ALLOW_LOCAL_TO_VWORLD_READ, ALLOW_LOCALE_READ, ALLOW_PARENT_READ, ALLOW_PICKABLE_READ, ALLOW_PICKABLE_WRITE, ENABLE_COLLISION_REPORTING, ENABLE_PICK_REPORTING

Fields inherited from interface ij3d.ContentConstants

BB, BS, CO, CS, CUSTOM, MULTIORTHO, ORTHO, PL, SURFACE, SURFACE_PLOT2D, VOLUME

Constructor Summary

Constructors

Constructor and Description
ContentInstant(String name)

Method Summary

Modifier and Type	Method and Description
void	addPointListPoint(org.jogamp.vecmath.Point3d p) Deprecated.
void	applySurfaceColors(ij.ImagePlus imp)
void	applyTransform(double[] matrix)
void	applyTransform(org.jogamp.java3d.Transform3D transform)
void	canvasResized()
void	clearDisplayedData()
void	clearOriginalData()
void	contentAdded(Content c)
void	contentChanged(Content c)
void	contentRemoved(Content c)
void	contentSelected(Content c)
void	deletePointListPoint(int i) Deprecated.
void	display(ContentNode node)
void	displayAs(int type)
ij.ImagePlus	exportTransformed()
void	eyePtChanged(org.jogamp.java3d.View view)
void	getAlphaLUT(int[] l)
void	getBlueLUT(int[] l)
boolean[]	getChannels()
org.jogamp.vecmath.Color3f	getColor()
ContentNode	getContent()
static int	getDefaultResamplingFactor(ij.ImagePlus imp, int type)
static int	getDefaultThreshold(ij.ImagePlus imp, int type)
void	getGreenLUT(int[] l)
ij.ImagePlus	getImage()
org.jogamp.vecmath.Color3f	getLandmarkColor()
float	getLandmarkPointSize()
org.jogamp.java3d.TransformGroup	getLocalRotate()
void	getLocalRotate(org.jogamp.java3d.Transform3D t)
org.jogamp.java3d.TransformGroup	getLocalTranslate()
void	getLocalTranslate(org.jogamp.java3d.Transform3D t)
String	getName()
PointList	getPointList()
void	getRedLUT(int[] l)
int	getResamplingFactor()
int	getThreshold()
int	getTimepoint()
float	getTransparency()
int	getType()
boolean	hasBoundingBox()
boolean	hasCoord()
boolean	isAvailable()
boolean	isLocked()
boolean	isPLVisible()
boolean	isSaturatedVolumeRendering()
boolean	isShaded()
boolean	isVisible()
void	loadPointList()
void	restoreDisplayedData()
void	savePointList()
void	savePointList(PrintStream out)
void	setChannels(boolean[] channels)
void	setColor(org.jogamp.vecmath.Color3f color)
void	setLandmarkColor(org.jogamp.vecmath.Color3f color)
void	setLandmarkPointSize(float r)
void	setListPointPos(int i, org.jogamp.vecmath.Point3d pos) Deprecated.
void	setLocked(boolean b)
void	setLUT(int[] rLUT, int[] gLUT, int[] bLUT, int[] aLUT)
void	setPointList(PointList points)
void	setPointListDialog(PointListDialog p)
void	setSaturatedVolumeRendering(boolean b)
void	setSelected(boolean selected)
void	setShaded(boolean b)
void	setThreshold(int th)
void	setTransform(double[] matrix)
void	setTransform(org.jogamp.java3d.Transform3D transform)
void	setTransparency(float transparency)
void	setVisible(boolean b)
void	showBoundingBox(boolean b)
void	showCoordinateSystem(boolean b)
void	showPointList(boolean b)
void	swapDisplayedData()
void	toggleLock()
void	transformationFinished(org.jogamp.java3d.View view)
void	transformationStarted(org.jogamp.java3d.View view)
void	transformationUpdated(org.jogamp.java3d.View view)
void	universeClosed()

Methods inherited from class org.jogamp.java3d.BranchGroup

cloneNode, compile, detach, pickAll, pickAll, pickAllSorted, pickAllSorted, pickAny, pickAny, pickClosest, pickClosest

Methods inherited from class org.jogamp.java3d.Group

addChild, getAllChildren, getAlternateCollisionTarget, getChild, getCollisionBounds, indexOfChild, insertChild, moveTo, numChildren, removeAllChildren, removeChild, removeChild, setAlternateCollisionTarget, setChild, setCollisionBounds

Methods inherited from class org.jogamp.java3d.Node

cloneTree, cloneTree, cloneTree, cloneTree, cloneTree, cloneTree, duplicateNode, getBounds, getBoundsAutoCompute, getCollidable, getLocale, getLocalToVworld, getLocalToVworld, getParent, getPickable, setBounds, setBoundsAutoCompute, setCollidable, setPickable

Methods inherited from class org.jogamp.java3d.SceneGraphObject

clearCapability, clearCapabilityIsFrequent, duplicateSceneGraphObject, getCapability, getCapabilityIsFrequent, getUserData, isCompiled, isLive, setCapability, setCapabilityIsFrequent, setName, setUserData, toString, updateNodeReferences

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

color

protected org.jogamp.vecmath.Color3f color

image

protected ij.ImagePlus image

channels

protected boolean[] channels

rLUT

protected int[] rLUT

gLUT

protected int[] gLUT

bLUT

protected int[] bLUT

aLUT

protected int[] aLUT

transparency

protected float transparency

resamplingF

protected int resamplingF

threshold

protected int threshold

shaded

protected boolean shaded

type

protected int type

selected

protected boolean selected

localRotate

protected org.jogamp.java3d.TransformGroup localRotate

localTranslate

protected org.jogamp.java3d.TransformGroup localTranslate

Constructor Detail

ContentInstant

public ContentInstant(String name)

Method Detail

displayAs

public void displayAs(int type)

getDefaultThreshold

public static int getDefaultThreshold(ij.ImagePlus imp,
                                      int type)

getDefaultResamplingFactor

public static int getDefaultResamplingFactor(ij.ImagePlus imp,
                                             int type)

display

public void display(ContentNode node)

exportTransformed

public ij.ImagePlus exportTransformed()

clearOriginalData

public void clearOriginalData()

swapDisplayedData

public void swapDisplayedData()

restoreDisplayedData

public void restoreDisplayedData()

clearDisplayedData

public void clearDisplayedData()

isAvailable

public boolean isAvailable()

setVisible

public void setVisible(boolean b)

showBoundingBox

public void showBoundingBox(boolean b)

showCoordinateSystem

public void showCoordinateSystem(boolean b)

setSelected

public void setSelected(boolean selected)

setPointListDialog

public void setPointListDialog(PointListDialog p)

showPointList

public void showPointList(boolean b)

loadPointList

public void loadPointList()

setPointList

public void setPointList(PointList points)

savePointList

public void savePointList()

savePointList

public void savePointList(PrintStream out)
                   throws IOException

Throws:

IOException

addPointListPoint

@Deprecated
public void addPointListPoint(org.jogamp.vecmath.Point3d p)

Deprecated.

Parameters:

p -

setListPointPos

@Deprecated
public void setListPointPos(int i,
                                        org.jogamp.vecmath.Point3d pos)

Deprecated.

Parameters:

i -

pos -

getLandmarkPointSize

public float getLandmarkPointSize()

setLandmarkPointSize

public void setLandmarkPointSize(float r)

getLandmarkColor

public org.jogamp.vecmath.Color3f getLandmarkColor()

setLandmarkColor

public void setLandmarkColor(org.jogamp.vecmath.Color3f color)

getPointList

public PointList getPointList()

deletePointListPoint

@Deprecated
public void deletePointListPoint(int i)

Deprecated.

Parameters:

i -

toggleLock

public void toggleLock()

setLocked

public void setLocked(boolean b)

applyTransform

public void applyTransform(double[] matrix)

applyTransform

public void applyTransform(org.jogamp.java3d.Transform3D transform)

setTransform

public void setTransform(double[] matrix)

setTransform

public void setTransform(org.jogamp.java3d.Transform3D transform)

setLUT

public void setLUT(int[] rLUT,
                   int[] gLUT,
                   int[] bLUT,
                   int[] aLUT)

setChannels

public void setChannels(boolean[] channels)

setThreshold

public void setThreshold(int th)

setShaded

public void setShaded(boolean b)

isShaded

public boolean isShaded()

setSaturatedVolumeRendering

public void setSaturatedVolumeRendering(boolean b)

isSaturatedVolumeRendering

public boolean isSaturatedVolumeRendering()

applySurfaceColors

public void applySurfaceColors(ij.ImagePlus imp)

setColor

public void setColor(org.jogamp.vecmath.Color3f color)

setTransparency

public void setTransparency(float transparency)

transformationStarted

public void transformationStarted(org.jogamp.java3d.View view)

Specified by:

transformationStarted in interface UniverseListener

contentAdded

public void contentAdded(Content c)

Specified by:

contentAdded in interface UniverseListener

contentRemoved

public void contentRemoved(Content c)

Specified by:

contentRemoved in interface UniverseListener

canvasResized

public void canvasResized()

Specified by:

canvasResized in interface UniverseListener

contentSelected

public void contentSelected(Content c)

Specified by:

contentSelected in interface UniverseListener

contentChanged

public void contentChanged(Content c)

Specified by:

contentChanged in interface UniverseListener

universeClosed

public void universeClosed()

Specified by:

universeClosed in interface UniverseListener

transformationUpdated

public void transformationUpdated(org.jogamp.java3d.View view)

Specified by:

transformationUpdated in interface UniverseListener

transformationFinished

public void transformationFinished(org.jogamp.java3d.View view)

Specified by:

transformationFinished in interface UniverseListener

eyePtChanged

public void eyePtChanged(org.jogamp.java3d.View view)

getName

public String getName()

Overrides:

getName in class org.jogamp.java3d.SceneGraphObject

getTimepoint

public int getTimepoint()

getType

public int getType()

getContent

public ContentNode getContent()

getImage

public ij.ImagePlus getImage()

getChannels

public boolean[] getChannels()

getRedLUT

public void getRedLUT(int[] l)

getGreenLUT

public void getGreenLUT(int[] l)

getBlueLUT

public void getBlueLUT(int[] l)

getAlphaLUT

public void getAlphaLUT(int[] l)

getColor

public org.jogamp.vecmath.Color3f getColor()

getThreshold

public int getThreshold()

getTransparency

public float getTransparency()

getResamplingFactor

public int getResamplingFactor()

getLocalRotate

public org.jogamp.java3d.TransformGroup getLocalRotate()

getLocalTranslate

public org.jogamp.java3d.TransformGroup getLocalTranslate()

getLocalRotate

public void getLocalRotate(org.jogamp.java3d.Transform3D t)

getLocalTranslate

public void getLocalTranslate(org.jogamp.java3d.Transform3D t)

isLocked

public boolean isLocked()

isVisible

public boolean isVisible()

hasCoord

public boolean hasCoord()

hasBoundingBox

public boolean hasBoundingBox()

isPLVisible

public boolean isPLVisible()