Package ome.xml.model

Class Instrument

    • Constructor Detail

      • Instrument

        public Instrument()
        Default constructor.

      • Instrument

        public Instrument​(org.w3c.dom.Element element,
                  OMEModel model)
           throws EnumerationException
        Constructs Instrument recursively from an XML DOM tree.
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.

      • Instrument

        public Instrument​(Instrument orig)
        Copy constructor.

    • Method Detail

      • update

        public void update​(org.w3c.dom.Element element,
                   OMEModel model)
            throws EnumerationException
        Updates Instrument recursively from an XML DOM tree. NOTE: No properties are removed, only added or updated.
        Specified by:
        update in interface OMEModelObject
        Overrides:
        update in class AbstractOMEModelObject
        Parameters:
        element - Root of the XML DOM tree to construct a model object graph from.
        model - Handler for the OME model which keeps track of instances and references seen during object population.
        Throws:
        EnumerationException - If there is an error instantiating an enumeration during model object creation.

      • link

        public boolean link​(Reference reference,
                    OMEModelObject o)
        Description copied from interface: OMEModelObject
        Link a given OME model object to this model object.
        Specified by:
        link in interface OMEModelObject
        Overrides:
        link in class AbstractOMEModelObject
        Parameters:
        reference - The type qualifier for the reference. This should be the corresponding reference type for o. If, for example, o is of type Image, reference MUST be of type ImageRef.
        o - Model object to link to.
        Returns:
        true if this model object was able to handle the reference, false otherwise.

      • getID

        public java.lang.String getID()

      • setID

        public void setID​(java.lang.String id)

      • getMicroscope

        public Microscope getMicroscope()

      • setMicroscope

        public void setMicroscope​(Microscope microscope)

      • sizeOfLightSourceList

        public int sizeOfLightSourceList()

      • copyLightSourceList

        public java.util.List<LightSource> copyLightSourceList()

      • clearLightSourceList

        public void clearLightSourceList()

      • getLightSource

        public LightSource getLightSource​(int index)

      • addLightSource

        public void addLightSource​(LightSource lightSource)

      • removeLightSource

        public void removeLightSource​(LightSource lightSource)

      • sizeOfDetectorList

        public int sizeOfDetectorList()

      • copyDetectorList

        public java.util.List<Detector> copyDetectorList()

      • clearDetectorList

        public void clearDetectorList()

      • getDetector

        public Detector getDetector​(int index)

      • addDetector

        public void addDetector​(Detector detector)

      • removeDetector

        public void removeDetector​(Detector detector)

      • sizeOfObjectiveList

        public int sizeOfObjectiveList()

      • copyObjectiveList

        public java.util.List<Objective> copyObjectiveList()

      • clearObjectiveList

        public void clearObjectiveList()

      • getObjective

        public Objective getObjective​(int index)

      • addObjective

        public void addObjective​(Objective objective)

      • removeObjective

        public void removeObjective​(Objective objective)

      • sizeOfFilterSetList

        public int sizeOfFilterSetList()

      • copyFilterSetList

        public java.util.List<FilterSet> copyFilterSetList()

      • clearFilterSetList

        public void clearFilterSetList()

      • getFilterSet

        public FilterSet getFilterSet​(int index)

      • addFilterSet

        public void addFilterSet​(FilterSet filterSet)

      • removeFilterSet

        public void removeFilterSet​(FilterSet filterSet)

      • sizeOfFilterList

        public int sizeOfFilterList()

      • copyFilterList

        public java.util.List<Filter> copyFilterList()

      • clearFilterList

        public void clearFilterList()

      • getFilter

        public Filter getFilter​(int index)

      • setFilter

        public Filter setFilter​(int index,
                        Filter filter)

      • addFilter

        public void addFilter​(Filter filter)

      • removeFilter

        public void removeFilter​(Filter filter)

      • sizeOfDichroicList

        public int sizeOfDichroicList()

      • copyDichroicList

        public java.util.List<Dichroic> copyDichroicList()

      • clearDichroicList

        public void clearDichroicList()

      • getDichroic

        public Dichroic getDichroic​(int index)

      • addDichroic

        public void addDichroic​(Dichroic dichroic)

      • removeDichroic

        public void removeDichroic​(Dichroic dichroic)

      • sizeOfLinkedAnnotationList

        public int sizeOfLinkedAnnotationList()

      • copyLinkedAnnotationList

        public java.util.List<Annotation> copyLinkedAnnotationList()

      • getLinkedAnnotation

        public Annotation getLinkedAnnotation​(int index)

      • linkAnnotation

        public boolean linkAnnotation​(Annotation o)

      • unlinkAnnotation

        public boolean unlinkAnnotation​(Annotation o)

      • sizeOfLinkedImageList

        public int sizeOfLinkedImageList()

      • copyLinkedImageList

        public java.util.List<Image> copyLinkedImageList()

      • getLinkedImage

        public Image getLinkedImage​(int index)

      • setLinkedImage

        public Image setLinkedImage​(int index,
                            Image o)

      • linkImage

        public boolean linkImage​(Image o)

      • unlinkImage

        public boolean unlinkImage​(Image o)

      • asXMLElement

        public org.w3c.dom.Element asXMLElement​(org.w3c.dom.Document document,
                                        org.w3c.dom.Element Instrument_element)
        Description copied from class: AbstractOMEModelObject
        Takes the entire object hierarchy and produced an XML DOM tree taking into account class hierarchy.
        Overrides:
        asXMLElement in class AbstractOMEModelObject
        Parameters:
        document - Destination document for element creation, etc.
        Instrument_element - Element from the subclass. If null a new element will be created of this class.
        Returns:
        element populated with properties from this class.