Package sc.fiji.snt.plugin

Class ShollAnalysisImgCommonCmd

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

sc.fiji.snt.plugin.ShollAnalysisImgCommonCmd

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

Direct Known Subclasses:

ShollAnalysisImgCmd, ShollAnalysisImgInteractiveCmd

public class ShollAnalysisImgCommonCmd
extends org.scijava.command.DynamicCommand

Implements the backbone for Analyze:Sholl:Sholl Analysis (From Image) commands...

Author:

Tiago Ferreira

Field Summary

Fields

Modifier and Type	Field	Description
protected static final String	EMPTY_LABEL
protected static final String	HEADER_HTML
protected static final String	HEADER_TOOLTIP

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor	Description
ShollAnalysisImgCommonCmd()

Method Summary

Modifier and Type	Method	Description
protected void	cancelAndFreezeUI(String cancelReason)
protected Profile	getProfile()
protected void	init()
protected void	overlayShells()
void	preview()
void	run()
protected void	runAnalysis()
protected void	setAnalysisScope()
protected void	setProfile(Profile profile)
protected boolean	updateHyperStackPosition()
protected boolean	validRequirements(boolean includeOngoingAnalysis)

Methods inherited from class org.scijava.command.DynamicCommand

cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

cancel, getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.Module

cancel, getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Field Details

HEADER_HTML

protected static final String HEADER_HTML

See Also:

• Constant Field Values

HEADER_TOOLTIP

protected static final String HEADER_TOOLTIP

See Also:

• Constant Field Values

EMPTY_LABEL

protected static final String EMPTY_LABEL

See Also:

• Constant Field Values

Constructor Details

ShollAnalysisImgCommonCmd

public ShollAnalysisImgCommonCmd()

Method Details

run

public void run()

preview

public void preview()

Specified by:

preview in interface org.scijava.module.Module

Overrides:

preview in class org.scijava.module.AbstractModule

validRequirements

protected boolean validRequirements(boolean includeOngoingAnalysis)

runAnalysis

protected void runAnalysis()
                    throws InterruptedException

Throws:

InterruptedException

setProfile

protected void setProfile(Profile profile)

getProfile

protected Profile getProfile()

init

protected void init()

setAnalysisScope

protected void setAnalysisScope()

updateHyperStackPosition

protected boolean updateHyperStackPosition()

cancelAndFreezeUI

protected void cancelAndFreezeUI(String cancelReason)

overlayShells

protected void overlayShells()