Package sc.fiji.snt.plugin

Class ShollAnalysisImgCmd

java.lang.Object

org.scijava.module.AbstractModule

org.scijava.module.DefaultMutableModule

org.scijava.command.DynamicCommand

sc.fiji.snt.plugin.ShollAnalysisImgCommonCmd

sc.fiji.snt.plugin.ShollAnalysisImgCmd

All Implemented Interfaces:

Runnable, org.scijava.Cancelable, org.scijava.command.Command, org.scijava.Contextual, org.scijava.module.Module, org.scijava.module.MutableModule, org.scijava.plugin.SciJavaPlugin

public class ShollAnalysisImgCmd
extends ShollAnalysisImgCommonCmd

Command for performing Sholl analysis on binary 2D/3D images of neuronal structures.

Field Summary

Fields inherited from class sc.fiji.snt.plugin.ShollAnalysisImgCommonCmd

EMPTY_LABEL, HEADER_HTML, HEADER_TOOLTIP

Fields inherited from class org.scijava.command.DynamicCommand

moduleService, pluginService

Constructor Summary

Constructors

Constructor	Description
ShollAnalysisImgCmd()

Method Summary

Modifier and Type	Method	Description
protected void	init()
void	run()

Methods inherited from class sc.fiji.snt.plugin.ShollAnalysisImgCommonCmd

cancelAndFreezeUI, getProfile, overlayShells, preview, runAnalysis, setAnalysisScope, setProfile, updateHyperStackPosition, validRequirements

Methods inherited from class org.scijava.command.DynamicCommand

cancel, context, getCancelReason, getContext, getInfo, getInput, getOutput, isCanceled, saveInputs, setContext, setInput, setOutput, uncancel

Methods inherited from class org.scijava.module.AbstractModule

cancel, getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, resolveInput, resolveOutput, setInputs, setOutputs, unresolveInput, unresolveOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.scijava.module.Module

cancel, getDelegateObject, getInputs, getOutputs, initialize, isInputResolved, isOutputResolved, isResolved, resolveInput, resolveOutput, setInputs, setOutputs, setResolved, unresolveInput, unresolveOutput

Methods inherited from interface org.scijava.module.MutableModule

addInput, addInput, addOutput, addOutput, removeInput, removeOutput

Constructor Details

ShollAnalysisImgCmd

public ShollAnalysisImgCmd()

Method Details

init

protected void init()

Overrides:

init in class ShollAnalysisImgCommonCmd

run

public void run()

Specified by:

run in interface org.scijava.module.MutableModule

Specified by:

run in interface Runnable

Overrides:

run in class ShollAnalysisImgCommonCmd