Package sc.fiji.snt.annotation

package sc.fiji.snt.annotation
Classes handling neuropil annotations and atlases metadata.
Author:
Tiago Ferreira
  • Class
    Description
    AllenCompartment
    Defines an Allen Reference Atlas (ARA) [Allen Mouse Common Coordinate Framework] annotation.
    AllenUtils
    Utility methods for accessing/handling AllenCompartments
    BrainAnnotation
    Classes extending this interface implement a neuropil label/annotation aka "compartment".
    InsectBrainCompartment
     
    InsectBrainUtils
    Utility methods for retrieving species, brain, and neuron data from the Insect Brain Database
    VFBUtils
    Utility methods for accessing/handling Virtual Fly Brain (VFB) annotations
    ZBAtlasUtils
    Utility methods for accessing the Max Plank Zebrafish Brain Atlas (ZBA) at fishatlas.neuro.mpg.de.