Package sc.fiji.snt.analysis.graph

Class SNTPseudograph<V,E extends org.jgrapht.graph.DefaultWeightedEdge>

java.lang.Object

org.jgrapht.graph.AbstractGraph<V,E>

org.jgrapht.graph.AbstractBaseGraph<V,E>

sc.fiji.snt.analysis.graph.SNTGraph<V,E>

sc.fiji.snt.analysis.graph.SNTPseudograph<V,E>

Type Parameters:

V - the vertex type

E - the edge type, must extend DefaultWeightedEdge

All Implemented Interfaces:

Serializable, Cloneable, org.jgrapht.Graph<V,E>

public class SNTPseudograph<V,E extends org.jgrapht.graph.DefaultWeightedEdge>
extends SNTGraph<V,E>

A specialized implementation of SNTGraph that represents a directed pseudograph with weighted edges. A pseudograph is a graph type that allows:

• Multiple edges between the same pair of vertices (parallel edges)
• Self-loops (edges from a vertex to itself)
• Weighted edges
• Directed edges
• Cycles in the graph

Like its parent class SNTGraph, this implementation supports vertex/edge coloring and vertex value mapping.

See Also:

• SNTGraph
• DefaultWeightedEdge
• Serialized Form

Field Summary

Fields inherited from interface org.jgrapht.Graph

DEFAULT_EDGE_WEIGHT

Constructor Summary

Constructors

Constructor	Description
SNTPseudograph(Class<? extends E> edgeClass)	Constructs a new SNTPseudograph with edges of the specified class.

Method Summary

Methods inherited from class sc.fiji.snt.analysis.graph.SNTGraph

applyEdges, applyVertices, filterEdges, filterVertices, getEdgeColor, getEdgeColorRGBMap, getVertexColor, getVertexColorRGBMap, getVertexValue, getVertexValueMap, setEdgeColor, setVertexColor, setVertexValue

Methods inherited from class org.jgrapht.graph.AbstractBaseGraph

addEdge, addEdge, addVertex, addVertex, clone, containsEdge, containsVertex, degreeOf, edgeSet, edgesOf, getAllEdges, getEdge, getEdgeSource, getEdgeSupplier, getEdgeTarget, getEdgeWeight, getType, getVertexSupplier, incomingEdgesOf, inDegreeOf, iterables, outDegreeOf, outgoingEdgesOf, removeEdge, removeEdge, removeVertex, setEdgeSupplier, setEdgeWeight, setVertexSupplier, vertexSet

Methods inherited from class org.jgrapht.graph.AbstractGraph

assertVertexExist, containsEdge, equals, hashCode, removeAllEdges, removeAllEdges, removeAllEdges, removeAllVertices, toString, toStringFromSets

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.jgrapht.Graph

containsEdge, removeAllEdges, removeAllEdges, removeAllVertices, setEdgeWeight

Constructor Details

SNTPseudograph

public SNTPseudograph(Class<? extends E> edgeClass)

Constructs a new SNTPseudograph with edges of the specified class. The graph is initialized with the following properties:

• Directed edges
• Multiple edges allowed between vertices
• Self-loops allowed
• Cycles allowed
• Weighted edges
• Modifiable structure

Parameters:

edgeClass - the class of edges to be used in this graph

Throws:

IllegalArgumentException - if the edge class cannot be instantiated