org.janelia.saalfeldlab.n5.universe.translation

Class TranslatedN5Writer

java.lang.Object

org.janelia.saalfeldlab.n5.universe.translation.TranslatedN5Reader

org.janelia.saalfeldlab.n5.universe.translation.TranslatedN5Writer

All Implemented Interfaces:

AutoCloseable, org.janelia.saalfeldlab.n5.GsonN5Reader, org.janelia.saalfeldlab.n5.GsonN5Writer, org.janelia.saalfeldlab.n5.N5Reader, org.janelia.saalfeldlab.n5.N5Writer

public class TranslatedN5Writer
extends TranslatedN5Reader
implements org.janelia.saalfeldlab.n5.GsonN5Writer

Nested Class Summary

Nested classes/interfaces inherited from interface org.janelia.saalfeldlab.n5.N5Writer

org.janelia.saalfeldlab.n5.N5Writer.DataBlockSupplier<T>

Nested classes/interfaces inherited from interface org.janelia.saalfeldlab.n5.N5Reader

org.janelia.saalfeldlab.n5.N5Reader.Version

Field Summary

Fields

Modifier and Type	Field and Description
protected ContainerMetadataWriter	containerWriter
protected org.janelia.saalfeldlab.n5.GsonN5Writer	writer

Fields inherited from class org.janelia.saalfeldlab.n5.universe.translation.TranslatedN5Reader

translation

Fields inherited from interface org.janelia.saalfeldlab.n5.N5Reader

NO_VERSION, VERSION, VERSION_KEY

Constructor Summary

Constructors

Constructor and Description
TranslatedN5Writer(org.janelia.saalfeldlab.n5.GsonN5Writer n5Base, com.google.gson.Gson gson, String fwdTranslation, String invTranslation)

Method Summary

Modifier and Type	Method and Description
void	createGroup(String pathName)
boolean	deleteBlock(String datasetPath, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes, long... gridPosition)
boolean	deleteBlock(String pathName, long... gridPosition)
boolean	deleteChunk(String datasetPath, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes, long... gridPosition)
boolean	deleteChunk(String pathName, long... gridPosition)
org.janelia.saalfeldlab.n5.N5Writer	getBaseWriter()
boolean	remove()
boolean	remove(String pathName)
boolean	removeAttribute(String pathName, String key)
<T> T	removeAttribute(String pathName, String key, Class<T> clazz)
boolean	removeAttributes(String pathName, List<String> attributes)
<T> void	setAttribute(String pathName, String key, T attribute)
void	setAttributes(String groupPath, com.google.gson.JsonElement attributes)
void	setAttributes(String pathName, Map<String,?> attributes)
<T> void	writeBlock(String pathName, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes, org.janelia.saalfeldlab.n5.DataBlock<T> dataBlock)
<T> void	writeChunk(String pathName, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes, org.janelia.saalfeldlab.n5.DataBlock<T> dataBlock)
<T> void	writeRegion(String datasetPath, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes, long[] min, long[] size, org.janelia.saalfeldlab.n5.N5Writer.DataBlockSupplier<T> dataBlocks, boolean writeFully)
<T> void	writeRegion(String datasetPath, org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes, long[] min, long[] size, org.janelia.saalfeldlab.n5.N5Writer.DataBlockSupplier<T> dataBlocks, boolean writeFully, ExecutorService exec)

Methods inherited from class org.janelia.saalfeldlab.n5.universe.translation.TranslatedN5Reader

blockExists, exists, getAttributes, getAttributesKey, getGson, getTranslation, getURI, groupPath, list, listAttributes, originalPath, readBlock, readChunk

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.janelia.saalfeldlab.n5.GsonN5Reader

createDatasetAttributes, getAttribute, getAttribute, getAttributes, getAttributesKey, getDatasetAttributes, getGson, listAttributes

Methods inherited from interface org.janelia.saalfeldlab.n5.N5Writer

createDataset, createDataset, deleteChunks, setDatasetAttributes, setVersion, writeChunks, writeSerializedBlock

Methods inherited from interface org.janelia.saalfeldlab.n5.N5Reader

blockExists, close, datasetExists, deepList, deepList, deepList, deepList, deepList, deepListDatasets, deepListDatasets, deepListDatasets, deepListDatasets, deepListHelper, exists, getConvertedDatasetAttributes, getGroupSeparator, getURI, getVersion, groupPath, list, readBlock, readChunk, readChunks, readSerializedBlock

Field Detail

writer

protected org.janelia.saalfeldlab.n5.GsonN5Writer writer

containerWriter

protected ContainerMetadataWriter containerWriter

Constructor Detail

TranslatedN5Writer

public TranslatedN5Writer(org.janelia.saalfeldlab.n5.GsonN5Writer n5Base,
                          com.google.gson.Gson gson,
                          String fwdTranslation,
                          String invTranslation)

Method Detail

getBaseWriter

public org.janelia.saalfeldlab.n5.N5Writer getBaseWriter()

setAttribute

public <T> void setAttribute(String pathName,
                             String key,
                             T attribute)

Specified by:

setAttribute in interface org.janelia.saalfeldlab.n5.N5Writer

setAttributes

public void setAttributes(String pathName,
                          Map<String,?> attributes)

Specified by:

setAttributes in interface org.janelia.saalfeldlab.n5.N5Writer

setAttributes

public void setAttributes(String groupPath,
                          com.google.gson.JsonElement attributes)
                   throws org.janelia.saalfeldlab.n5.N5Exception

Specified by:

setAttributes in interface org.janelia.saalfeldlab.n5.GsonN5Writer

Throws:

org.janelia.saalfeldlab.n5.N5Exception

createGroup

public void createGroup(String pathName)

Specified by:

createGroup in interface org.janelia.saalfeldlab.n5.N5Writer

remove

public boolean remove(String pathName)

Specified by:

remove in interface org.janelia.saalfeldlab.n5.N5Writer

remove

public boolean remove()

Specified by:

remove in interface org.janelia.saalfeldlab.n5.N5Writer

removeAttribute

public boolean removeAttribute(String pathName,
                               String key)

Specified by:

removeAttribute in interface org.janelia.saalfeldlab.n5.N5Writer

removeAttribute

public <T> T removeAttribute(String pathName,
                             String key,
                             Class<T> clazz)

Specified by:

removeAttribute in interface org.janelia.saalfeldlab.n5.N5Writer

removeAttributes

public boolean removeAttributes(String pathName,
                                List<String> attributes)

Specified by:

removeAttributes in interface org.janelia.saalfeldlab.n5.N5Writer

writeChunk

public <T> void writeChunk(String pathName,
                           org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes,
                           org.janelia.saalfeldlab.n5.DataBlock<T> dataBlock)

Specified by:

writeChunk in interface org.janelia.saalfeldlab.n5.N5Writer

writeBlock

public <T> void writeBlock(String pathName,
                           org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes,
                           org.janelia.saalfeldlab.n5.DataBlock<T> dataBlock)

Specified by:

writeBlock in interface org.janelia.saalfeldlab.n5.N5Writer

writeRegion

public <T> void writeRegion(String datasetPath,
                            org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes,
                            long[] min,
                            long[] size,
                            org.janelia.saalfeldlab.n5.N5Writer.DataBlockSupplier<T> dataBlocks,
                            boolean writeFully)
                     throws org.janelia.saalfeldlab.n5.N5Exception

Specified by:

writeRegion in interface org.janelia.saalfeldlab.n5.N5Writer

Throws:

org.janelia.saalfeldlab.n5.N5Exception

writeRegion

public <T> void writeRegion(String datasetPath,
                            org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes,
                            long[] min,
                            long[] size,
                            org.janelia.saalfeldlab.n5.N5Writer.DataBlockSupplier<T> dataBlocks,
                            boolean writeFully,
                            ExecutorService exec)
                     throws org.janelia.saalfeldlab.n5.N5Exception,
                            InterruptedException,
                            ExecutionException

Specified by:

writeRegion in interface org.janelia.saalfeldlab.n5.N5Writer

Throws:

org.janelia.saalfeldlab.n5.N5Exception

InterruptedException

ExecutionException

deleteChunk

public boolean deleteChunk(String pathName,
                           long... gridPosition)

Specified by:

deleteChunk in interface org.janelia.saalfeldlab.n5.N5Writer

deleteChunk

public boolean deleteChunk(String datasetPath,
                           org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes,
                           long... gridPosition)
                    throws org.janelia.saalfeldlab.n5.N5Exception

Specified by:

deleteChunk in interface org.janelia.saalfeldlab.n5.N5Writer

Throws:

org.janelia.saalfeldlab.n5.N5Exception

deleteBlock

public boolean deleteBlock(String pathName,
                           long... gridPosition)

Specified by:

deleteBlock in interface org.janelia.saalfeldlab.n5.N5Writer

deleteBlock

public boolean deleteBlock(String datasetPath,
                           org.janelia.saalfeldlab.n5.DatasetAttributes datasetAttributes,
                           long... gridPosition)
                    throws org.janelia.saalfeldlab.n5.N5Exception

Specified by:

deleteBlock in interface org.janelia.saalfeldlab.n5.N5Writer

Throws:

org.janelia.saalfeldlab.n5.N5Exception