B C D E F G H I L N O R S T V W

B

blockExists(String, DatasetAttributes, long...) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

C

close() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

containsEscapeCharacters(String) - Static method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

createDataset(String, DatasetAttributes) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

createGroup(String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

cropBlockSize(long[], long[], int[], int[], long[]) - Static method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

Crops the dimensions of a DataBlock at a given offset to fit into an interval of given dimensions.

D

datasetExists(String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

defaultBlockSize - Variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

deleteBlock(String, long...) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

deleteBlock(String, DatasetAttributes, long...) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

deleteChunk(String, long...) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

deleteChunk(String, DatasetAttributes, long...) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

doesOverrideBlockSize() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

E

exists(String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

F

FILE_SYSTEM_KEY_VALUE_ACCESS - Static variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

G

getAttribute(String, String, Type) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

getAttribute(String, String, Class<T>) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

getAttributes(String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

getAttributesKey() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

getDatasetAttributes(String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

Always returns Compression.CompressionType#RAW because I could not yet find a meaningful way to get information about the compression of a dataset.

getDataType(HDF5DataSetInformation) - Static method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

getDefaultBlockSizeCopy() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

getFilename() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

getGson() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

getURI() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

gson - Variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

H

HDF5_SIG - Static variable in class org.janelia.saalfeldlab.n5.hdf5.HDF5Utils

HDF5Utils - Class in org.janelia.saalfeldlab.n5.hdf5

HDF5Utils() - Constructor for class org.janelia.saalfeldlab.n5.hdf5.HDF5Utils

I

isHDF5(String) - Static method in class org.janelia.saalfeldlab.n5.hdf5.HDF5Utils

L

list(String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

listAttributes(String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

String attributes will be parsed as JSON and classified as 1) An Object[] if it is a JsonArray 2) A String if it is a JsonPrimitive 3) An Object if it is a JsonObject

N

N5_JSON_ROOT_KEY - Static variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

N5HDF5Reader - Class in org.janelia.saalfeldlab.n5.hdf5

Best effort N5Reader implementation for HDF5 files.

N5HDF5Reader(IHDF5Reader, boolean, GsonBuilder, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

Opens an N5HDF5Reader for a given HDF5 file.

N5HDF5Reader(IHDF5Reader, boolean, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

Opens an N5HDF5Reader for a given HDF5 file.

N5HDF5Reader(IHDF5Reader, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

Opens an N5HDF5Reader for a given HDF5 file.

N5HDF5Reader(String, boolean, GsonBuilder, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

Opens an N5HDF5Reader for a given HDF5 file.

N5HDF5Reader(String, boolean, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

Opens an N5HDF5Reader for a given HDF5 file.

N5HDF5Reader(String, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

Opens an N5HDF5Reader for a given HDF5 file.

N5HDF5Writer - Class in org.janelia.saalfeldlab.n5.hdf5

Best effort N5Writer implementation for HDF5 files.

N5HDF5Writer(IHDF5Writer, boolean, GsonBuilder, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

Opens an N5HDF5Writer for a given HDF5 file.

N5HDF5Writer(IHDF5Writer, boolean, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

Opens an N5HDF5Writer for a given HDF5 file.

N5HDF5Writer(IHDF5Writer, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

Opens an N5HDF5Writer for a given HDF5 file.

N5HDF5Writer(String, boolean, GsonBuilder, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

Opens an N5HDF5Writer for a given HDF5 file.

N5HDF5Writer(String, boolean, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

Opens an N5HDF5Writer for a given HDF5 file.

N5HDF5Writer(String, int...) - Constructor for class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

Opens an N5HDF5Writer for a given HDF5 file.

normalizeHdf5PathLocation(String) - Static method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

O

openDataSetCache - Variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

org.janelia.saalfeldlab.n5.hdf5 - package org.janelia.saalfeldlab.n5.hdf5

overrideBlockSize - Variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

R

readBlock(String, DatasetAttributes, long...) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

readChunk(String, DatasetAttributes, long...) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

reader - Variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

remove() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

remove(String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

removeAttribute(String, String) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

removeAttribute(String, String, Class<T>) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

removeAttributes(String, List<String>) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

reorder(long[]) - Static method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

reorder(int[]) - Static method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

S

setAttribute(String, String, T) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

setAttributes(String, Map<String, ?>) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

setAttributes(String, JsonElement) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

setDatasetAttributes(String, DatasetAttributes) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

T

toString() - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

V

VERSION - Static variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Reader

SemVer version of this N5-HDF5 spec.

W

writeBlock(String, DatasetAttributes, DataBlock<T>) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

writeChunk(String, DatasetAttributes, DataBlock<T>) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

writer - Variable in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

writeRegion(String, DatasetAttributes, long[], long[], N5Writer.DataBlockSupplier<T>, boolean) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

writeRegion(String, DatasetAttributes, long[], long[], N5Writer.DataBlockSupplier<T>, boolean, ExecutorService) - Method in class org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer

B C D E F G H I L N O R S T V W