Package loci.formats

Class TileStitcher

java.lang.Object

loci.formats.ReaderWrapper

loci.formats.TileStitcher

All Implemented Interfaces:

Closeable, AutoCloseable, ICompressedTileReader, IFormatHandler, IFormatReader, IMetadataConfigurable, IPyramidHandler

public class TileStitcher
extends ReaderWrapper

Field Summary

Fields inherited from class loci.formats.ReaderWrapper

reader

Fields inherited from interface loci.formats.IFormatReader

CAN_GROUP, CANNOT_GROUP, MUST_GROUP

Constructor Summary

Constructors

Constructor	Description
TileStitcher()	Constructs a TileStitcher around a new image reader.
TileStitcher(IFormatReader r)	Constructs a TileStitcher with the given reader.

Method Summary

Modifier and Type	Method	Description
Class<?>	getNativeDataType()
int	getSeriesCount()
int	getSizeX()
int	getSizeY()
Codec	getTileCodec(int no)
CodecOptions	getTileCodecOptions(int no, int x, int y)
int	getTileColumns(int no)
int	getTileRows(int no)
static TileStitcher	makeTileStitcher(IFormatReader r)	Converts the given reader into a TileStitcher, wrapping if needed.
byte[]	openBytes(int no)
byte[]	openBytes(int no, byte[] buf)
byte[]	openBytes(int no, byte[] buf, int x, int y, int w, int h)
byte[]	openBytes(int no, int x, int y, int w, int h)
byte[]	openCompressedBytes(int no, byte[] buf, int x, int y)
byte[]	openCompressedBytes(int no, int x, int y)
void	setId(String id)

Methods inherited from class loci.formats.ReaderWrapper

close, close, coreIndexToSeries, duplicate, fileGroupOption, get16BitLookupTable, get8BitLookupTable, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getBitsPerPixel, getCoreIndex, getCoreMetadataList, getCurrentFile, getDatasetStructureDescription, getDimensionOrder, getDomains, getEffectiveSizeC, getFillColor, getFormat, getGlobalMetadata, getImageCount, getIndex, getIndex, getMetadataOptions, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getModuloC, getModuloT, getModuloZ, getOptimalTileHeight, getOptimalTileWidth, getPixelType, getPossibleDomains, getReader, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getSeries, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeZ, getSuffixes, getSupportedMetadataLevels, getThumbSizeX, getThumbSizeY, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, getZCTModuloCoords, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isSingleFile, isThisType, isThisType, isThisType, isThisType, isThumbnailSeries, openPlane, openThumbBytes, reopenFile, seriesToCoreIndex, setCoreIndex, setFillColor, setFlattenedResolutions, setGroupFiles, setMetadataFiltered, setMetadataOptions, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries, unwrap, unwrap, unwrap

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

TileStitcher

public TileStitcher()

Constructs a TileStitcher around a new image reader.

TileStitcher

public TileStitcher(IFormatReader r)

Constructs a TileStitcher with the given reader.

Method Details

makeTileStitcher

public static TileStitcher makeTileStitcher(IFormatReader r)

Converts the given reader into a TileStitcher, wrapping if needed.

getSizeX

public int getSizeX()

Specified by:

getSizeX in interface IFormatReader

Overrides:

getSizeX in class ReaderWrapper

getSizeY

public int getSizeY()

Specified by:

getSizeY in interface IFormatReader

Overrides:

getSizeY in class ReaderWrapper

getSeriesCount

public int getSeriesCount()

Specified by:

getSeriesCount in interface IFormatReader

Overrides:

getSeriesCount in class ReaderWrapper

openBytes

public byte[] openBytes(int no)
                 throws FormatException,
IOException

Specified by:

openBytes in interface IFormatReader

Overrides:

openBytes in class ReaderWrapper

Throws:

FormatException

IOException

openBytes

public byte[] openBytes(int no,
 byte[] buf)
                 throws FormatException,
IOException

Specified by:

openBytes in interface IFormatReader

Overrides:

openBytes in class ReaderWrapper

Throws:

FormatException

IOException

openBytes

public byte[] openBytes(int no,
 int x,
 int y,
 int w,
 int h)
                 throws FormatException,
IOException

Specified by:

openBytes in interface IFormatReader

Overrides:

openBytes in class ReaderWrapper

Throws:

FormatException

IOException

openBytes

public byte[] openBytes(int no,
 byte[] buf,
 int x,
 int y,
 int w,
 int h)
                 throws FormatException,
IOException

Specified by:

openBytes in interface IFormatReader

Overrides:

openBytes in class ReaderWrapper

Throws:

FormatException

IOException

setId

public void setId(String id)
           throws FormatException,
IOException

Specified by:

setId in interface IFormatHandler

Overrides:

setId in class ReaderWrapper

Throws:

FormatException

IOException

getTileRows

public int getTileRows(int no)

Specified by:

getTileRows in interface ICompressedTileReader

Overrides:

getTileRows in class ReaderWrapper

getTileColumns

public int getTileColumns(int no)

Specified by:

getTileColumns in interface ICompressedTileReader

Overrides:

getTileColumns in class ReaderWrapper

openCompressedBytes

public byte[] openCompressedBytes(int no,
 int x,
 int y)
                           throws FormatException,
IOException

Specified by:

openCompressedBytes in interface ICompressedTileReader

Overrides:

openCompressedBytes in class ReaderWrapper

Throws:

FormatException

IOException

openCompressedBytes

public byte[] openCompressedBytes(int no,
 byte[] buf,
 int x,
 int y)
                           throws FormatException,
IOException

Specified by:

openCompressedBytes in interface ICompressedTileReader

Overrides:

openCompressedBytes in class ReaderWrapper

Throws:

FormatException

IOException

getTileCodec

public Codec getTileCodec(int no)
                   throws FormatException,
IOException

Specified by:

getTileCodec in interface ICompressedTileReader

Overrides:

getTileCodec in class ReaderWrapper

Throws:

FormatException

IOException

getTileCodecOptions

public CodecOptions getTileCodecOptions(int no,
 int x,
 int y)
                                 throws FormatException,
IOException

Specified by:

getTileCodecOptions in interface ICompressedTileReader

Overrides:

getTileCodecOptions in class ReaderWrapper

Throws:

FormatException

IOException

getNativeDataType

public Class<?> getNativeDataType()

Specified by:

getNativeDataType in interface IFormatHandler

Overrides:

getNativeDataType in class ReaderWrapper