Package loci.formats

Class ChannelSeparator

java.lang.Object
loci.formats.ReaderWrapper
loci.formats.ChannelSeparator
All Implemented Interfaces:
Closeable, AutoCloseable, loci.formats.ICompressedTileReader, loci.formats.IFormatHandler, loci.formats.IFormatReader, loci.formats.IMetadataConfigurable, loci.formats.IPyramidHandler
public class ChannelSeparator extends loci.formats.ReaderWrapper
Logic to automatically separate the channels in a file.

  • Field Summary

    Fields inherited from class loci.formats.ReaderWrapper

    reader

    Fields inherited from interface loci.formats.IFormatReader

    CAN_GROUP, CANNOT_GROUP, MUST_GROUP

  • Constructor Summary

    Constructors
    Constructor
    Description
    ChannelSeparator()
    Constructs a ChannelSeparator around a new image reader.
    ChannelSeparator(loci.formats.IFormatReader r)
    Constructs a ChannelSeparator with the given reader.

  • Method Summary

    Modifier and Type
    Method
    Description
    void
    close(boolean fileOnly)
     
    String
    getDimensionOrder()
     
    int
    getImageCount()
     
    int
    getIndex(int z, int c, int t)
     
    int
    getIndex(int z, int c, int t, int moduloZ, int moduloC, int moduloT)
     
    Class<?>
    getNativeDataType()
     
    int
    getOriginalIndex(int no)
    Returns the image number in the original dataset that corresponds to the given image number.
    loci.formats.codec.Codec
    getTileCodec(int no)
     
    loci.formats.codec.CodecOptions
    getTileCodecOptions(int no, int x, int y)
     
    int[]
    getZCTCoords(int index)
     
    int[]
    getZCTModuloCoords(int index)
     
    boolean
    isRGB()
     
    static ChannelSeparator
    makeChannelSeparator(loci.formats.IFormatReader r)
    Converts the given reader into a ChannelSeparator, wrapping if needed.
    byte[]
    openBytes(int no)
     
    byte[]
    openBytes(int no, byte[] buf)
     
    byte[]
    openBytes(int no, byte[] buf, int x, int y, int w, int h)
     
    byte[]
    openBytes(int no, int x, int y, int w, int h)
     
    byte[]
    openCompressedBytes(int no, byte[] buf, int x, int y)
     
    byte[]
    openCompressedBytes(int no, int x, int y)
     
    byte[]
    openThumbBytes(int no)
     
    void
    setId(String id)
     

    Methods inherited from class loci.formats.ReaderWrapper

    close, coreIndexToSeries, duplicate, fileGroupOption, get16BitLookupTable, get8BitLookupTable, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getBitsPerPixel, getCoreIndex, getCoreMetadataList, getCurrentFile, getDatasetStructureDescription, getDomains, getEffectiveSizeC, getFillColor, getFormat, getGlobalMetadata, getMetadataOptions, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getModuloC, getModuloT, getModuloZ, getOptimalTileHeight, getOptimalTileWidth, getPixelType, getPossibleDomains, getReader, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getSeries, getSeriesCount, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getSuffixes, getSupportedMetadataLevels, getThumbSizeX, getThumbSizeY, getTileColumns, getTileRows, getUnderlyingReaders, getUsedFiles, getUsedFiles, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isSingleFile, isThisType, isThisType, isThisType, isThisType, isThumbnailSeries, openPlane, reopenFile, seriesToCoreIndex, setCoreIndex, setFillColor, setFlattenedResolutions, setGroupFiles, setMetadataFiltered, setMetadataOptions, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries, unwrap, unwrap, unwrap

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait