Package loci.plugins.util

Class ImageProcessorReader

java.lang.Object
loci.formats.ReaderWrapper
loci.plugins.util.ImageProcessorReader
All Implemented Interfaces:
Closeable, AutoCloseable, loci.formats.ICompressedTileReader, loci.formats.IFormatHandler, loci.formats.IFormatReader, loci.formats.IMetadataConfigurable, loci.formats.IPyramidHandler
public class ImageProcessorReader extends loci.formats.ReaderWrapper
A low-level reader for ImageProcessor objects. For a higher-level reader that returns ImagePlus objects, see ImagePlusReader instead.

  • Field Summary

    Fields inherited from class loci.formats.ReaderWrapper

    reader

    Fields inherited from interface loci.formats.IFormatReader

    CAN_GROUP, CANNOT_GROUP, MUST_GROUP

  • Constructor Summary

    Constructors
    Constructor
    Description
    ImageProcessorReader()
    Constructs an ImageProcessorReader around a new image reader.
    ImageProcessorReader(loci.formats.IFormatReader r)
    Constructs an ImageProcessorReader with the given reader.

  • Method Summary

    Modifier and Type
    Method
    Description
    Class<?>
    getNativeDataType()
     
    static ImageProcessorReader
    makeImageProcessorReader(loci.formats.IFormatReader r)
    Converts the given reader into a ImageProcessorReader, wrapping if needed.
    Object
    openPlane(int no, int x, int y, int w, int h)
     
    ImageProcessor[]
    openProcessors(int no)
    Creates an ImageJ image processor object for the image plane at the given position.
    ImageProcessor[]
    openProcessors(int no, int x, int y, int w, int h)
    Returns an array of ImageProcessors that represent the given slice.
    ImageProcessor[]
    openThumbProcessors(int no)
     

    Methods inherited from class loci.formats.ReaderWrapper

    close, close, coreIndexToSeries, duplicate, fileGroupOption, get16BitLookupTable, get8BitLookupTable, getAdvancedSeriesUsedFiles, getAdvancedUsedFiles, getBitsPerPixel, getCoreIndex, getCoreMetadataList, getCurrentFile, getDatasetStructureDescription, getDimensionOrder, getDomains, getEffectiveSizeC, getFillColor, getFormat, getGlobalMetadata, getImageCount, getIndex, getIndex, getMetadataOptions, getMetadataStore, getMetadataStoreRoot, getMetadataValue, getModuloC, getModuloT, getModuloZ, getOptimalTileHeight, getOptimalTileWidth, getPixelType, getPossibleDomains, getReader, getRequiredDirectories, getResolution, getResolutionCount, getRGBChannelCount, getSeries, getSeriesCount, getSeriesMetadata, getSeriesMetadataValue, getSeriesUsedFiles, getSeriesUsedFiles, getSizeC, getSizeT, getSizeX, getSizeY, getSizeZ, getSuffixes, getSupportedMetadataLevels, getThumbSizeX, getThumbSizeY, getTileCodec, getTileCodecOptions, getTileColumns, getTileRows, getUnderlyingReaders, getUsedFiles, getUsedFiles, getZCTCoords, getZCTModuloCoords, hasCompanionFiles, hasFlattenedResolutions, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isLittleEndian, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOriginalMetadataPopulated, isRGB, isSingleFile, isThisType, isThisType, isThisType, isThisType, isThumbnailSeries, openBytes, openBytes, openBytes, openBytes, openCompressedBytes, openCompressedBytes, openThumbBytes, reopenFile, seriesToCoreIndex, setCoreIndex, setFillColor, setFlattenedResolutions, setGroupFiles, setId, setMetadataFiltered, setMetadataOptions, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setResolution, setSeries, unwrap, unwrap, unwrap

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait