All Classes and Interfaces

Class	Description
About	Displays a small information dialog about the Bio-Formats Plugins package.
BF	Miscellaneous plugins utility methods.
BFVirtualStack	Subclass of VirtualStack that uses Bio-Formats to read planes on demand.
BooleanOption	A boolean option for one of the plugins.
BrowserOptionsWindow	Extension of JFrame that allows the user to adjust caching settings.
Calibrator	Logic for calibrating images.
CellSensWidgets	Custom widgets for configuring Bio-Formats CellSens .vsi support.
ColorDialog	Bio-Formats Importer custom color chooser dialog box.
Colorizer	Logic for colorizing images.
Concatenator	Logic for concatenating multiple images together.
ConfigWindow	A window for managing configuration of the Bio-Formats plugins.
CropDialog	Bio-Formats Importer crop options dialog box.
DataBrowser	Extension of StackWindow with additional UI trimmings for animation, virtual stack caching options, metadata, and general beautification.
DisplayHandler	Logic for displaying images and metadata onscreen using ImageJ.
DoubleOption	A double option for one of the plugins.
Exporter	Core logic for the Bio-Formats Exporter ImageJ plugin.
FilePatternDialog	Bio-Formats Importer file pattern dialog box.
FormatEntry	A list entry for the configuration window's Formats tab.
IdDialog	Bio-Formats Importer id chooser dialog box.
IFormatWidgets	Interface for defining custom widgets for a specific file format reader.
IJStatusEchoer	Echoes status messages to the ImageJ status bar.
ImagePlusReader	A high-level reader for ImagePlus objects.
ImageProcessorReader	A low-level reader for ImageProcessor objects.
ImageProcessorSource	Retrieves ImageJ image processors from an image reader.
Importer	Core logic for the Bio-Formats Importer ImageJ plugin.
ImporterDialog	Abstract superclass of importer dialogs.
ImporterMetadata	Helper class for storing original metadata key/value pairs.
ImporterOptions	Helper class for managing Bio-Formats Importer options.
ImporterPrompter	Helper class for presenting the user with dialog boxes for configuring importer options.
ImportProcess	Manages the import preparation process.
ImportStep	An enumeration of the steps in the import preparation process.
InstallWizard	A wizard for walking users through installation of third party libraries and plugins used by the Bio-Formats plugins.
LibraryChecker	Utility methods for verifying that classes are present and versions are correct.
LibraryChecker.Library	List of possible libraries for which to check.
LibraryEntry	A list entry for the configuration window's Libraries tab.
LIFWidgets	Custom widgets for configuring Bio-Formats Leica LIF support.
LocationDialog	Bio-Formats Importer location chooser dialog box.
LociConfig	An ImageJ plugin for displaying the Bio-Formats plugins configuration dialog.
LociExporter	ImageJ plugin for writing files using the OME Bio-Formats package.
LociFunctions	This class provides macro extensions in ImageJ for Bio-Formats.
LociImporter	ImageJ plugin for reading files using the OME Bio-Formats package.
LociInstaller	An ImageJ plugin for installing and upgrading libraries related to the Bio-Formats plugins.
LociPrefs	Utility methods for ImageJ preferences for Bio-Formats plugins.
MacroFunctions	Convenience class that simplifies implemention of ImageJ macro extensions.
MainDialog	Bio-Formats Importer general options dialog box.
MemoryDialog	Bio-Formats Importer memory usage confirmation dialog box.
ND2Widgets	Custom widgets for configuring Bio-Formats ND2 support.
Option	Base class for an option for one of the plugins.
OptionsDialog	Base class for options dialogs.
OptionsList	Base class for ImageJ preferences for plugins.
RangeDialog	Bio-Formats Importer range chooser dialog box.
RecordedImageProcessor	Image processor extension that records commands executed upon it.
ROIHandler	Utility class for managing regions of interest within ImageJ.
SDTWidgets	Custom widgets for configuring Bio-Formats SDT support.
SearchableWindow	Text panel with search capabilities.
SeriesDialog	Bio-Formats Importer series chooser dialog box.
ShortcutPanel	A plugin that displays a small window containing shortcuts to the plugins, including the Bio-Formats Importer, Bio-Formats Exporter, Stack Colorizer and Stack Slicer.
ShortcutTransferHandler	Drag and drop transfer handler for Bio-Formats Plugins Shortcut Window.
Slicer	A plugin for splitting an image stack into separate channels, focal planes and/or time points.
SpringUtilities	A 1.4 file that provides utility methods for creating form- or grid-style layouts with SpringLayout.
StringOption	A string option for one of the plugins.
SwapDialog	Bio-Formats Importer dimension swapper dialog box.
TextAreaWriter	Writer implementation that writes to a JTextArea document.
ThumbLoader	Loads thumbnails for Bio-Formats Importer series chooser in a separate thread.
TiffDelegateWidgets	Custom widgets for configuring Bio-Formats TIFF support.
Updater	A plugin for updating the Bio-Formats plugins.
UpgradeDialog	Bio-Formats Importer upgrade checker dialog box.
VirtualImagePlus	Extension of ImagePlus that supports Bio-Formats-driven virtual stacks.
VirtualReader	TODO
WindowTools	Utility methods for managing ImageJ dialogs and windows.
ZeissCZIWidgets	Custom widgets for configuring Bio-Formats Zeiss CZI support.