Package net.preibisch.mvrecon.process.quality

Class FRCRealRandomAccessible<T extends net.imglib2.type.numeric.RealType<T>>

java.lang.Object

net.preibisch.mvrecon.process.quality.FRCRealRandomAccessible<T>

Type Parameters:

T - pixel type

All Implemented Interfaces:

net.imglib2.EuclideanSpace, net.imglib2.RealRandomAccessible<net.imglib2.type.numeric.real.FloatType>, net.imglib2.Typed<net.imglib2.type.numeric.real.FloatType>

public class FRCRealRandomAccessible<T extends net.imglib2.type.numeric.RealType<T>>
extends Object
implements net.imglib2.RealRandomAccessible<net.imglib2.type.numeric.real.FloatType>

Computes the fourier ring correlation at specific positions and interpolates between all points

Author:

Stephan Preibisch (stephan.preibisch@gmx.de)

Field Summary

Fields

Modifier and Type	Field	Description
static int	relativeFRCDist

Constructor Summary

Constructors

Constructor	Description
FRCRealRandomAccessible(net.imglib2.RandomAccessibleInterval<T> input, List<net.imglib2.Point> locations, int length, boolean relative, ExecutorService service)

Method Summary

Modifier and Type	Method	Description
static double	computeFRC(net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input, net.imglib2.Point location, int length)
static double	computeRelativeFRC(net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input, net.imglib2.Point location, int length, int relativeFRCDist)
static ij.process.FloatProcessor	getFloatProcessor(net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> img, int x, int y, int z, int length)
static <T extends net.imglib2.type.numeric.RealType<T>> net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getFloatRAI(net.imglib2.RandomAccessibleInterval<T> input)
net.imglib2.PointSampleList<net.imglib2.type.numeric.real.FloatType>	getQualityList()
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getRandomAccessibleInterval()
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getRandomAccessibleInterval(int numPoints, double power)
net.imglib2.RealRandomAccessible<net.imglib2.type.numeric.real.FloatType>	getRealRandomAccessible()
double	getTotalAvgQuality()
net.imglib2.type.numeric.real.FloatType	getType()
static double	integral(double[][] frcCurve)
int	numDimensions()
net.imglib2.RealRandomAccess<net.imglib2.type.numeric.real.FloatType>	realRandomAccess()
net.imglib2.RealRandomAccess<net.imglib2.type.numeric.real.FloatType>	realRandomAccess(net.imglib2.RealInterval interval)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.RealRandomAccessible

getAt, getAt, getAt, realView

Field Details

relativeFRCDist

public static int relativeFRCDist

Constructor Details

FRCRealRandomAccessible

public FRCRealRandomAccessible(net.imglib2.RandomAccessibleInterval<T> input,
 List<net.imglib2.Point> locations,
 int length,
 boolean relative,
 ExecutorService service)

Method Details

getTotalAvgQuality

public double getTotalAvgQuality()

numDimensions

public int numDimensions()

Specified by:

numDimensions in interface net.imglib2.EuclideanSpace

realRandomAccess

public net.imglib2.RealRandomAccess<net.imglib2.type.numeric.real.FloatType> realRandomAccess()

Specified by:

realRandomAccess in interface net.imglib2.RealRandomAccessible<T extends net.imglib2.type.numeric.RealType<T>>

realRandomAccess

public net.imglib2.RealRandomAccess<net.imglib2.type.numeric.real.FloatType> realRandomAccess(net.imglib2.RealInterval interval)

Specified by:

realRandomAccess in interface net.imglib2.RealRandomAccessible<T extends net.imglib2.type.numeric.RealType<T>>

getType

public net.imglib2.type.numeric.real.FloatType getType()

Specified by:

getType in interface net.imglib2.Typed<T extends net.imglib2.type.numeric.RealType<T>>

getRealRandomAccessible

public net.imglib2.RealRandomAccessible<net.imglib2.type.numeric.real.FloatType> getRealRandomAccessible()

getRandomAccessibleInterval

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getRandomAccessibleInterval()

getRandomAccessibleInterval

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getRandomAccessibleInterval(int numPoints,
 double power)

getQualityList

public net.imglib2.PointSampleList<net.imglib2.type.numeric.real.FloatType> getQualityList()

computeRelativeFRC

public static double computeRelativeFRC(net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input,
 net.imglib2.Point location,
 int length,
 int relativeFRCDist)

computeFRC

public static double computeFRC(net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> input,
 net.imglib2.Point location,
 int length)

integral

public static double integral(double[][] frcCurve)

getFloatProcessor

public static ij.process.FloatProcessor getFloatProcessor(net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType> img,
 int x,
 int y,
 int z,
 int length)

getFloatRAI

public static <T extends net.imglib2.type.numeric.RealType<T>>
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getFloatRAI(net.imglib2.RandomAccessibleInterval<T> input)