Package net.preibisch.mvrecon.process.fusion.transformed

Class TransformedInputRandomAccess2d<T extends net.imglib2.type.numeric.RealType<T>>

java.lang.Object

net.preibisch.mvrecon.process.fusion.transformed.TransformedInputRandomAccess2d<T>

All Implemented Interfaces:

net.imglib2.EuclideanSpace, net.imglib2.Localizable, net.imglib2.Positionable, net.imglib2.RandomAccess<net.imglib2.type.numeric.real.FloatType>, net.imglib2.RealLocalizable, net.imglib2.Sampler<net.imglib2.type.numeric.real.FloatType>, net.imglib2.Typed<net.imglib2.type.numeric.real.FloatType>

public class TransformedInputRandomAccess2d<T extends net.imglib2.type.numeric.RealType<T>>
extends Object
implements net.imglib2.Localizable, net.imglib2.RandomAccess<net.imglib2.type.numeric.real.FloatType>

Virtually transforms any RandomAccessibleInterval<RealType> into a RandomAccess<FloatType> using an AffineTransformation and Linear Interpolation. It will only interpolate from the actual data (no outofbounds) to avoid artifacts at the edges and return 0 outside by default (can be changed). This is actually a two-dimensional implementation that represents itself as 3d to be compatible

Author:

preibisch

Constructor Summary

Constructors

Constructor

Description

TransformedInputRandomAccess2d(net.imglib2.RandomAccessibleInterval<T> img3d, net.imglib2.realtransform.AffineTransform3D transform, net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory, boolean hasMinValue, float minValue, net.imglib2.type.numeric.real.FloatType outside, long[] offset)

Method Summary

Modifier and Type	Method	Description
void	bck(int d)
TransformedInputRandomAccess2d<T>	copy()
TransformedInputRandomAccess2d<T>	copyRandomAccess()
void	fwd(int d)
net.imglib2.type.numeric.real.FloatType	get()
double	getDoublePosition(int d)
float	getFloatPosition(int d)
int	getIntPosition(int d)
long	getLongPosition(int d)
void	localize(double[] position)
void	localize(float[] position)
void	localize(int[] position)
void	localize(long[] position)
void	move(int[] distance)
void	move(int distance, int d)
void	move(long[] distance)
void	move(long distance, int d)
void	move(net.imglib2.Localizable localizable)
int	numDimensions()
void	setPosition(int[] pos)
void	setPosition(int pos, int d)
void	setPosition(long[] pos)
void	setPosition(long pos, int d)
void	setPosition(net.imglib2.Localizable localizable)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.Localizable

localize, localize, positionAsLongArray, positionAsPoint

Methods inherited from interface net.imglib2.RandomAccess

setPositionAndGet, setPositionAndGet, setPositionAndGet

Methods inherited from interface net.imglib2.RealLocalizable

positionAsDoubleArray, positionAsRealPoint

Methods inherited from interface net.imglib2.Sampler

getType

Constructor Details

TransformedInputRandomAccess2d

public TransformedInputRandomAccess2d(net.imglib2.RandomAccessibleInterval<T> img3d,
 net.imglib2.realtransform.AffineTransform3D transform,
 net.imglib2.interpolation.InterpolatorFactory<net.imglib2.type.numeric.real.FloatType,net.imglib2.RandomAccessible<net.imglib2.type.numeric.real.FloatType>> interpolatorFactory,
 boolean hasMinValue,
 float minValue,
 net.imglib2.type.numeric.real.FloatType outside,
 long[] offset)

Method Details

get

public net.imglib2.type.numeric.real.FloatType get()

Specified by:

get in interface net.imglib2.Sampler<T extends net.imglib2.type.numeric.RealType<T>>

copy

public TransformedInputRandomAccess2d<T> copy()

Specified by:

copy in interface net.imglib2.RandomAccess<T extends net.imglib2.type.numeric.RealType<T>>

Specified by:

copy in interface net.imglib2.Sampler<T extends net.imglib2.type.numeric.RealType<T>>

copyRandomAccess

public TransformedInputRandomAccess2d<T> copyRandomAccess()

Specified by:

copyRandomAccess in interface net.imglib2.RandomAccess<T extends net.imglib2.type.numeric.RealType<T>>

fwd

public void fwd(int d)

Specified by:

fwd in interface net.imglib2.Positionable

bck

public void bck(int d)

Specified by:

bck in interface net.imglib2.Positionable

move

public void move(int distance,
 int d)

Specified by:

move in interface net.imglib2.Positionable

move

public void move(long distance,
 int d)

Specified by:

move in interface net.imglib2.Positionable

move

public void move(net.imglib2.Localizable localizable)

Specified by:

move in interface net.imglib2.Positionable

move

public void move(int[] distance)

Specified by:

move in interface net.imglib2.Positionable

move

public void move(long[] distance)

Specified by:

move in interface net.imglib2.Positionable

setPosition

public void setPosition(net.imglib2.Localizable localizable)

Specified by:

setPosition in interface net.imglib2.Positionable

setPosition

public void setPosition(int[] pos)

Specified by:

setPosition in interface net.imglib2.Positionable

setPosition

public void setPosition(long[] pos)

Specified by:

setPosition in interface net.imglib2.Positionable

setPosition

public void setPosition(int pos,
 int d)

Specified by:

setPosition in interface net.imglib2.Positionable

setPosition

public void setPosition(long pos,
 int d)

Specified by:

setPosition in interface net.imglib2.Positionable

localize

public void localize(float[] position)

Specified by:

localize in interface net.imglib2.RealLocalizable

localize

public void localize(double[] position)

Specified by:

localize in interface net.imglib2.RealLocalizable

getFloatPosition

public float getFloatPosition(int d)

Specified by:

getFloatPosition in interface net.imglib2.Localizable

Specified by:

getFloatPosition in interface net.imglib2.RealLocalizable

getDoublePosition

public double getDoublePosition(int d)

Specified by:

getDoublePosition in interface net.imglib2.Localizable

Specified by:

getDoublePosition in interface net.imglib2.RealLocalizable

numDimensions

public int numDimensions()

Specified by:

numDimensions in interface net.imglib2.EuclideanSpace

localize

public void localize(int[] position)

Specified by:

localize in interface net.imglib2.Localizable

localize

public void localize(long[] position)

Specified by:

localize in interface net.imglib2.Localizable

getIntPosition

public int getIntPosition(int d)

Specified by:

getIntPosition in interface net.imglib2.Localizable

getLongPosition

public long getLongPosition(int d)

Specified by:

getLongPosition in interface net.imglib2.Localizable