Package net.preibisch.mvrecon.process.deconvolution.normalization

Class NormalizingRandomAccess<T extends net.imglib2.type.numeric.RealType<T>>

java.lang.Object

net.imglib2.AbstractEuclideanSpace

net.imglib2.AbstractLocalizableInt

net.preibisch.mvrecon.process.deconvolution.normalization.NormalizingRandomAccess<T>

All Implemented Interfaces:

net.imglib2.EuclideanSpace, net.imglib2.Localizable, net.imglib2.Positionable, net.imglib2.RandomAccess<T>, net.imglib2.RealLocalizable, net.imglib2.Sampler<T>, net.imglib2.Typed<T>

public class NormalizingRandomAccess<T extends net.imglib2.type.numeric.RealType<T>>
extends net.imglib2.AbstractLocalizableInt
implements net.imglib2.RandomAccess<T>

Field Summary

Fields inherited from class net.imglib2.AbstractLocalizableInt

position

Fields inherited from class net.imglib2.AbstractEuclideanSpace

n

Constructor Summary

Constructors

Constructor	Description
NormalizingRandomAccess(int index, ArrayList<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> originalWeights, double osemspeedup, boolean additionalSmoothBlending, float maxDiffRange, float scalingRange, T type)

Method Summary

Modifier and Type	Method	Description
protected static final void	applyHard(ArrayList<net.imglib2.Cursor<net.imglib2.type.numeric.real.FloatType>> cursors, double sumW)
protected static final void	applySmooth(ArrayList<net.imglib2.Cursor<net.imglib2.type.numeric.real.FloatType>> cursors, double sumW, float maxDiffRange, float scalingRange)
void	bck(int d)
NormalizingRandomAccess<T>	copy()
NormalizingRandomAccess<T>	copyRandomAccess()
void	fwd(int d)
T	get()
static final float	hardWeights(float w, double sumW)
void	move(int[] distance)
void	move(int distance, int d)
void	move(long[] distance)
void	move(long distance, int d)
void	move(net.imglib2.Localizable localizable)
void	setPosition(int[] position)
void	setPosition(int position, int d)
void	setPosition(long[] position)
void	setPosition(long position, int d)
void	setPosition(net.imglib2.Localizable localizable)
static final float	smoothWeights(float w, double sumW, float maxDiffRange, float scalingRange)

Methods inherited from class net.imglib2.AbstractLocalizableInt

getDoublePosition, getFloatPosition, getIntPosition, getLongPosition, localize, localize, localize, localize

Methods inherited from class net.imglib2.AbstractEuclideanSpace

numDimensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.EuclideanSpace

numDimensions

Methods inherited from interface net.imglib2.Localizable

getDoublePosition, getFloatPosition, getIntPosition, getLongPosition, localize, localize, localize, localize, positionAsLongArray, positionAsPoint

Methods inherited from interface net.imglib2.RandomAccess

setPositionAndGet, setPositionAndGet, setPositionAndGet

Methods inherited from interface net.imglib2.RealLocalizable

localize, localize, positionAsDoubleArray, positionAsRealPoint

Methods inherited from interface net.imglib2.Sampler

getType

Constructor Details

NormalizingRandomAccess

public NormalizingRandomAccess(int index,
 ArrayList<net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>> originalWeights,
 double osemspeedup,
 boolean additionalSmoothBlending,
 float maxDiffRange,
 float scalingRange,
 T type)

Method Details

get

public T get()

Specified by:

get in interface net.imglib2.Sampler<T extends net.imglib2.type.numeric.RealType<T>>

fwd

public void fwd(int d)

Specified by:

fwd in interface net.imglib2.Positionable

bck

public void bck(int d)

Specified by:

bck in interface net.imglib2.Positionable

move

public void move(int distance,
 int d)

Specified by:

move in interface net.imglib2.Positionable

move

public void move(long distance,
 int d)

Specified by:

move in interface net.imglib2.Positionable

move

public void move(net.imglib2.Localizable localizable)

Specified by:

move in interface net.imglib2.Positionable

move

public void move(int[] distance)

Specified by:

move in interface net.imglib2.Positionable

move

public void move(long[] distance)

Specified by:

move in interface net.imglib2.Positionable

setPosition

public void setPosition(net.imglib2.Localizable localizable)

Specified by:

setPosition in interface net.imglib2.Positionable

setPosition

public void setPosition(int[] position)

Specified by:

setPosition in interface net.imglib2.Positionable

setPosition

public void setPosition(long[] position)

Specified by:

setPosition in interface net.imglib2.Positionable

setPosition

public void setPosition(int position,
 int d)

Specified by:

setPosition in interface net.imglib2.Positionable

setPosition

public void setPosition(long position,
 int d)

Specified by:

setPosition in interface net.imglib2.Positionable

copy

public NormalizingRandomAccess<T> copy()

Specified by:

copy in interface net.imglib2.RandomAccess<T extends net.imglib2.type.numeric.RealType<T>>

Specified by:

copy in interface net.imglib2.Sampler<T extends net.imglib2.type.numeric.RealType<T>>

copyRandomAccess

public NormalizingRandomAccess<T> copyRandomAccess()

Specified by:

copyRandomAccess in interface net.imglib2.RandomAccess<T extends net.imglib2.type.numeric.RealType<T>>

applySmooth

protected static final void applySmooth(ArrayList<net.imglib2.Cursor<net.imglib2.type.numeric.real.FloatType>> cursors,
 double sumW,
 float maxDiffRange,
 float scalingRange)

smoothWeights

public static final float smoothWeights(float w,
 double sumW,
 float maxDiffRange,
 float scalingRange)

applyHard

protected static final void applyHard(ArrayList<net.imglib2.Cursor<net.imglib2.type.numeric.real.FloatType>> cursors,
 double sumW)

hardWeights

public static final float hardWeights(float w,
 double sumW)