Package net.preibisch.mvrecon.process.deconvolution.iteration.sequential

Class ComputeBlockSeqThreadCUDA

java.lang.Object

net.preibisch.mvrecon.process.deconvolution.iteration.ComputeBlockThreadAbstract

net.preibisch.mvrecon.process.deconvolution.iteration.sequential.ComputeBlockSeqThreadAbstract

net.preibisch.mvrecon.process.deconvolution.iteration.sequential.ComputeBlockSeqThreadCUDA

All Implemented Interfaces:

ComputeBlockThread, ComputeBlockSeqThread

public class ComputeBlockSeqThreadCUDA
extends ComputeBlockSeqThreadAbstract

Nested Class Summary

Nested classes/interfaces inherited from interface net.preibisch.mvrecon.process.deconvolution.iteration.ComputeBlockThread

ComputeBlockThread.IterationStatistics

Constructor Summary

Constructors

Constructor	Description
ComputeBlockSeqThreadCUDA(ExecutorService service, float minValue, float lambda, int id, int[] blockSize, CUDAFourierConvolution cuda, CUDADevice cudaDevice)

Method Summary

Modifier and Type	Method	Description
void	convolve1(net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> psi, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel1, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> tmp1)
void	convolve2(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> tmp1, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel2, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> tmp2)
ComputeBlockThread.IterationStatistics	runIteration(DeconView view, Block block, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> imgBlock, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weightBlock, float maxIntensityView, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel1, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel2)	run an iteration on the block

Methods inherited from class net.preibisch.mvrecon.process.deconvolution.iteration.ComputeBlockThreadAbstract

getBlockSize, getId, getMinValue, getPsiBlockTmp

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.preibisch.mvrecon.process.deconvolution.iteration.ComputeBlockThread

getBlockSize, getId, getMinValue, getPsiBlockTmp

Constructor Details

ComputeBlockSeqThreadCUDA

public ComputeBlockSeqThreadCUDA(ExecutorService service,
 float minValue,
 float lambda,
 int id,
 int[] blockSize,
 CUDAFourierConvolution cuda,
 CUDADevice cudaDevice)

Method Details

runIteration

public ComputeBlockThread.IterationStatistics runIteration(DeconView view,
 Block block,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> imgBlock,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weightBlock,
 float maxIntensityView,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel1,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel2)

Description copied from interface: ComputeBlockSeqThread

run an iteration on the block

Parameters:

view - - the input view

block - - the Block instance

imgBlock - - the input image as block (virtual, outofbounds is zero)

weightBlock - - the weights for this image (virtual, outofbounds is zero)

maxIntensityView - - the maximum intensity of the view

kernel1 - - psf1

kernel2 - - psf2

Returns:

- statistics of this block

convolve1

public void convolve1(net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> psi,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel1,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> tmp1)

convolve2

public void convolve2(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> tmp1,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel2,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> tmp2)