Package net.preibisch.mvrecon.process.deconvolution

Class DeconView

java.lang.Object

net.preibisch.mvrecon.process.deconvolution.DeconView

public class DeconView
extends Object

One view for the multiview deconvolution, contains image, weight, and PSFs

Author:

stephan.preibisch@gmx.de

Field Summary

Fields

Modifier and Type	Field	Description
static int[]	defaultBlockSize

Constructor Summary

Constructors

Constructor	Description
DeconView(ExecutorService service, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel)
DeconView(ExecutorService service, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel)
DeconView(ExecutorService service, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel, int[] blockSize)
DeconView(ExecutorService service, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel, DeconViewPSF.PSFTYPE psfType, int[] blockSize, boolean filterBlocksForContent)
DeconView(ExecutorService service, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight, net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel, DeconViewPSF.PSFTYPE psfType, int[] blockSize, int minRequiredBlocks, boolean filterBlocksForContent)

Method Summary

Modifier and Type	Method	Description
static boolean	blockContainsContent(Block blockStruct, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight, ExecutorService service)
static net.imglib2.util.Pair<Integer,Integer>	filterBlocksForContent(List<List<Block>> blocksList, net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight, ExecutorService service)
int[]	getBlockSize()
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getImage()
List<List<Block>>	getNonInterferingBlocks()
int	getNumBlocks()
DeconViewPSF	getPSF()
String	getTitle()
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getWeight()
void	setTitle(String title)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

defaultBlockSize

public static int[] defaultBlockSize

Constructor Details

DeconView

public DeconView(ExecutorService service,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel)

DeconView

public DeconView(ExecutorService service,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel)

DeconView

public DeconView(ExecutorService service,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel,
 int[] blockSize)

DeconView

public DeconView(ExecutorService service,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel,
 DeconViewPSF.PSFTYPE psfType,
 int[] blockSize,
 boolean filterBlocksForContent)

DeconView

public DeconView(ExecutorService service,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> image,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight,
 net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel,
 DeconViewPSF.PSFTYPE psfType,
 int[] blockSize,
 int minRequiredBlocks,
 boolean filterBlocksForContent)

Method Details

setTitle

public void setTitle(String title)

getTitle

public String getTitle()

getImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getImage()

getWeight

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getWeight()

getPSF

public DeconViewPSF getPSF()

getBlockSize

public int[] getBlockSize()

getNonInterferingBlocks

public List<List<Block>> getNonInterferingBlocks()

getNumBlocks

public int getNumBlocks()

toString

public String toString()

Overrides:

toString in class Object

filterBlocksForContent

public static net.imglib2.util.Pair<Integer,Integer> filterBlocksForContent(List<List<Block>> blocksList,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight,
 ExecutorService service)

blockContainsContent

public static boolean blockContainsContent(Block blockStruct,
 net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> weight,
 ExecutorService service)