Package net.preibisch.mvrecon.process.deconvolution

Class DeconViewPSF

java.lang.Object

net.preibisch.mvrecon.process.deconvolution.DeconViewPSF

public class DeconViewPSF
extends Object

Handles the PSF for a specific view for the deconvolution

Author:

stephan.preibisch@gmx.de

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static enum	DeconViewPSF.PSFTYPE

Constructor Summary

Constructors

Constructor	Description
DeconViewPSF(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel)
DeconViewPSF(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel, DeconViewPSF.PSFTYPE psfType)

Method Summary

Modifier and Type	Method	Description
static net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?>	computeExponentialKernel(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel, int numViews)
static net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?>	computeInvertedKernel(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel)
net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?>	getKernel1()
net.imglib2.img.Img<net.imglib2.type.numeric.complex.ComplexFloatType>	getKernel1FFT()
net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?>	getKernel2()
net.imglib2.img.Img<net.imglib2.type.numeric.complex.ComplexFloatType>	getKernel2FFT()
void	init(DeconViews views, int[] blockSize)	Init the PSF, once the Views object contains all views

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DeconViewPSF

public DeconViewPSF(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel)

DeconViewPSF

public DeconViewPSF(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel,
 DeconViewPSF.PSFTYPE psfType)

Method Details

getKernel1

public net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> getKernel1()

getKernel2

public net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> getKernel2()

getKernel1FFT

public net.imglib2.img.Img<net.imglib2.type.numeric.complex.ComplexFloatType> getKernel1FFT()

getKernel2FFT

public net.imglib2.img.Img<net.imglib2.type.numeric.complex.ComplexFloatType> getKernel2FFT()

init

public void init(DeconViews views,
 int[] blockSize)

Init the PSF, once the Views object contains all views

Parameters:

views - - contains all views and their respective PSFs

blockSize - - if necessary precompute the FFT of the PSFs given the input size

computeExponentialKernel

public static net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> computeExponentialKernel(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel,
 int numViews)

computeInvertedKernel

public static net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> computeInvertedKernel(net.imglib2.img.array.ArrayImg<net.imglib2.type.numeric.real.FloatType,?> kernel)