Uses of Class
net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting.SplitViewerImgLoader

Packages that use SplitViewerImgLoader

Package	Description
net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting
net.preibisch.mvrecon.process.fusion.blk

Uses of SplitViewerImgLoader in net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting

Methods in net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting that return SplitViewerImgLoader

Modifier and Type	Method	Description
SplitViewerImgLoader	XmlIoSplitViewerImgLoader.fromXml(org.jdom2.Element elem, File basePath, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription)
SplitViewerImgLoader	XmlIoSplitViewerImgLoader.fromXml(org.jdom2.Element elem, URI basePathURI, mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<?,?,?> sequenceDescription)

Methods in net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting with parameters of type SplitViewerImgLoader

Modifier and Type	Method	Description
org.jdom2.Element	XmlIoSplitViewerImgLoader.toXml(SplitViewerImgLoader imgLoader, File basePath)

Uses of SplitViewerImgLoader in net.preibisch.mvrecon.process.fusion.blk

Methods in net.preibisch.mvrecon.process.fusion.blk with parameters of type SplitViewerImgLoader

Modifier and Type	Method	Description
static Map<mpicbg.spim.data.sequence.ViewId,List<SplitImgLoaderThinPlateSplineFusion.DonatedNail>>	SplitImgLoaderThinPlateSplineFusion.computeCrossViewNailDonations(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, Collection<? extends mpicbg.spim.data.sequence.ViewId> underlyingViewIds, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, double cornerCoverageRadius, int seamSamplesPerAxis, int[] seamSamplesScheduleThresholds, int[] seamSamplesScheduleValues, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)	Compute cross-view nail donations across all underlying views in one pass.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling)	Backward-compatible overload — center landmarks only (no correspondence-based midpoint landmarks).
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences)	Backward-compatible overload — correspondence midpoints but no corner anchors.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius)	Backward-compatible overload — corner anchors with N=2 (corners only).
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis)	Backward-compatible overload — no landmark visitor.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, int[] seamSamplesScheduleThresholds, int[] seamSamplesScheduleValues, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)	Backward-compatible overload — no donated nails.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, int[] seamSamplesScheduleThresholds, int[] seamSamplesScheduleValues, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor, List<SplitImgLoaderThinPlateSplineFusion.DonatedNail> donatedNails)	Build TPS Landmarks for one underlying view U.
static Landmarks	SplitImgLoaderThinPlateSplineFusion.getCoefficients(SplitViewerImgLoader splitImgLoader, Map<Integer,List<Integer>> old2newSetupId, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitRegMap, mpicbg.spim.data.sequence.ViewId underlyingViewId, double anisotropyFactor, double downsampling, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)	Backward-compatible overload — visitor only, no per-split schedule, no donated nails.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize)	Backward-compatible overload — center landmarks only (no correspondence-based midpoint landmarks).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences)	Backward-compatible overload — correspondence midpoints, no corner anchors.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius)	Backward-compatible overload — corner anchors with N=2 (corners only).
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis)	Backward-compatible overload — no landmark visitor.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, int[] seamSamplesScheduleThresholds, int[] seamSamplesScheduleValues, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,mpicbg.spim.data.registration.ViewRegistration> splitViewRegistrations, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, FusionGUI.FusionType fusionType, int intervalExpansion, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, ViewInterestPoints viewInterestPoints, String correspondenceLabel, int minNumCorrespondences, boolean anchorOverlapCorners, double cornerCoverageRadius, int seamSamplesPerAxis, Consumer<SplitImgLoaderThinPlateSplineFusion.LandmarkRecord> landmarkVisitor)	Backward-compatible overload — visitor only, no per-split schedule.
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>, D extends net.imglib2.type.NativeType<D> & net.imglib2.type.numeric.RealType<D>> net.imglib2.algorithm.blocks.BlockSupplier<T>	SplitImgLoaderThinPlateSplineFusion.initWithLoadedDfields(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType,T> converter, SplitViewerImgLoader splitImgLoader, Collection<? extends mpicbg.spim.data.sequence.ViewId> splitViewIdsInput, Map<mpicbg.spim.data.sequence.ViewId,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>> splitViewDescriptions, Map<mpicbg.spim.data.sequence.ViewId,net.imglib2.Interval> viewBounds, Map<mpicbg.spim.data.sequence.ViewId,net.imglib2.algorithm.blocks.dfield.DisplacementFields.TransformedDisplacementField<D>> rawDfields, FusionGUI.FusionType fusionType, double anisotropyFactor, int interpolationMethod, Map<Integer,Integer> fusionMap, Map<mpicbg.spim.data.sequence.ViewId,Coefficients> intensityAdjustmentCoefficients, net.imglib2.Interval fusionInterval, T type, int[] blockSize, Map<mpicbg.spim.data.sequence.ViewId,net.imglib2.realtransform.AffineTransform3D> approximateAffines)	Same as SplitImgLoaderThinPlateSplineFusion.init(net.imglib2.converter.Converter<net.imglib2.type.numeric.real.FloatType, T>, net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting.SplitViewerImgLoader, java.util.Collection<? extends mpicbg.spim.data.sequence.ViewId>, java.util.Map<mpicbg.spim.data.sequence.ViewId, mpicbg.spim.data.registration.ViewRegistration>, java.util.Map<mpicbg.spim.data.sequence.ViewId, ? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>>, net.preibisch.mvrecon.fiji.plugin.fusion.FusionGUI.FusionType, int, double, int, java.util.Map<java.lang.Integer, java.lang.Integer>, java.util.Map<mpicbg.spim.data.sequence.ViewId, net.preibisch.mvrecon.process.fusion.intensity.Coefficients>, net.imglib2.Interval, T, int[]) but accepts pre-built per-underlying-view dfields and approximate affines (e.g. loaded from disk after a distributed Phase-1.5 materialization).