Package net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting

Class SplitMultiResolutionSetupImgLoader<T>

java.lang.Object

net.preibisch.mvrecon.fiji.spimdata.imgloaders.splitting.SplitMultiResolutionSetupImgLoader<T>

All Implemented Interfaces:

mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>, mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>, mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>, mpicbg.spim.data.sequence.SetupImgLoader<T>

public class SplitMultiResolutionSetupImgLoader<T>
extends Object
implements mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>

Constructor Summary

Constructors

Constructor	Description
SplitMultiResolutionSetupImgLoader(mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T> underlyingSetupImgLoader, net.imglib2.Interval interval)

Method Summary

Modifier and Type	Method	Description
net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getFloatImage(int timepointId, int level, boolean normalize, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
net.imglib2.RandomAccessibleInterval<T>	getImage(int timepointId, int level, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
net.imglib2.RandomAccessibleInterval<T>	getImage(int timepointId, mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)
net.imglib2.Dimensions	getImageSize(int timepointId)
net.imglib2.Dimensions	getImageSize(int timepointId, int level)
T	getImageType()
double[][]	getMipmapResolutions()
net.imglib2.realtransform.AffineTransform3D[]	getMipmapTransforms()
mpicbg.spim.data.sequence.VoxelDimensions	getVoxelSize(int timepointId)
int	numMipmapLevels()
protected final void	updateScaledIntervals(net.imglib2.Interval[] scaledIntervals, int level, int n, net.imglib2.Interval fullImg)	Sometimes because of scaling the max is too high exceeding the actual downsampled image as provided

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader

getFloatImage

Constructor Details

SplitMultiResolutionSetupImgLoader

public SplitMultiResolutionSetupImgLoader(mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T> underlyingSetupImgLoader,
 net.imglib2.Interval interval)

Method Details

getImage

public net.imglib2.RandomAccessibleInterval<T> getImage(int timepointId,
 mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getImage in interface mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>

getImageType

public T getImageType()

Specified by:

getImageType in interface mpicbg.spim.data.generic.sequence.BasicSetupImgLoader<T>

getImageSize

public net.imglib2.Dimensions getImageSize(int timepointId)

Specified by:

getImageSize in interface mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>

Specified by:

getImageSize in interface mpicbg.spim.data.sequence.SetupImgLoader<T>

getVoxelSize

public mpicbg.spim.data.sequence.VoxelDimensions getVoxelSize(int timepointId)

Specified by:

getVoxelSize in interface mpicbg.spim.data.sequence.SetupImgLoader<T>

getImage

public net.imglib2.RandomAccessibleInterval<T> getImage(int timepointId,
 int level,
 mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getImage in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>

updateScaledIntervals

protected final void updateScaledIntervals(net.imglib2.Interval[] scaledIntervals,
 int level,
 int n,
 net.imglib2.Interval fullImg)

Sometimes because of scaling the max is too high exceeding the actual downsampled image as provided

Parameters:

scaledIntervals - - the current scaled intervals (will be updated)

level - - which level

n - - num dimensions

fullImg - - the full interval as currently loaded

getMipmapResolutions

public double[][] getMipmapResolutions()

Specified by:

getMipmapResolutions in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>

getMipmapTransforms

public net.imglib2.realtransform.AffineTransform3D[] getMipmapTransforms()

Specified by:

getMipmapTransforms in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>

numMipmapLevels

public int numMipmapLevels()

Specified by:

numMipmapLevels in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionSetupImgLoader<T>

getFloatImage

public net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getFloatImage(int timepointId,
 int level,
 boolean normalize,
 mpicbg.spim.data.generic.sequence.ImgLoaderHint... hints)

Specified by:

getFloatImage in interface mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>

getImageSize

public net.imglib2.Dimensions getImageSize(int timepointId,
 int level)

Specified by:

getImageSize in interface mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<T>