Package net.preibisch.mvrecon.fiji.spimdata.imgloaders.flatfield

Class MultiResolutionFlatfieldCorrectionWrappedImgLoader

java.lang.Object

net.preibisch.mvrecon.fiji.spimdata.imgloaders.flatfield.LazyLoadingFlatFieldCorrectionMap<mpicbg.spim.data.sequence.MultiResolutionImgLoader>

net.preibisch.mvrecon.fiji.spimdata.imgloaders.flatfield.MultiResolutionFlatfieldCorrectionWrappedImgLoader

All Implemented Interfaces:

mpicbg.spim.data.generic.sequence.BasicImgLoader, mpicbg.spim.data.generic.sequence.BasicMultiResolutionImgLoader, mpicbg.spim.data.sequence.ImgLoader, mpicbg.spim.data.sequence.MultiResolutionImgLoader, FlatfieldCorrectionWrappedImgLoader<mpicbg.spim.data.sequence.MultiResolutionImgLoader>

public class MultiResolutionFlatfieldCorrectionWrappedImgLoader
extends LazyLoadingFlatFieldCorrectionMap<mpicbg.spim.data.sequence.MultiResolutionImgLoader>
implements mpicbg.spim.data.sequence.MultiResolutionImgLoader

Field Summary

Fields inherited from class net.preibisch.mvrecon.fiji.spimdata.imgloaders.flatfield.LazyLoadingFlatFieldCorrectionMap

fileMap, raiMap

Constructor Summary

Constructors

Constructor	Description
MultiResolutionFlatfieldCorrectionWrappedImgLoader(mpicbg.spim.data.sequence.MultiResolutionImgLoader wrappedImgLoader)
MultiResolutionFlatfieldCorrectionWrappedImgLoader(mpicbg.spim.data.sequence.MultiResolutionImgLoader wrappedImgLoader, boolean cacheResult)

Method Summary

Modifier and Type	Method	Description
static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>> net.imglib2.RandomAccessibleInterval<T>	downsampleHDF5(net.imglib2.RandomAccessibleInterval<T> input, int[] dsFactor)	downsampling code form WriteSequenceToHdf5, distilled into one method
protected net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getOrCreateBrightImgDownsampled(mpicbg.spim.data.sequence.ViewId vId, int[] downsamplingFactors)
protected net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>	getOrCreateDarkImgDownsampled(mpicbg.spim.data.sequence.ViewId vId, int[] downsamplingFactors)
mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<?>	getSetupImgLoader(int setupId)
mpicbg.spim.data.sequence.MultiResolutionImgLoader	getWrappedImgLoder()
boolean	isActive()
boolean	isCached()
static void	main(String[] args)
void	setActive(boolean active)
void	setCached(boolean cached)

Methods inherited from class net.preibisch.mvrecon.fiji.spimdata.imgloaders.flatfield.LazyLoadingFlatFieldCorrectionMap

getBrightImg, getDarkImg, getFileMap, loadFileIfNecessary, setBrightImage, setDarkImage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MultiResolutionFlatfieldCorrectionWrappedImgLoader

public MultiResolutionFlatfieldCorrectionWrappedImgLoader(mpicbg.spim.data.sequence.MultiResolutionImgLoader wrappedImgLoader)

MultiResolutionFlatfieldCorrectionWrappedImgLoader

public MultiResolutionFlatfieldCorrectionWrappedImgLoader(mpicbg.spim.data.sequence.MultiResolutionImgLoader wrappedImgLoader,
 boolean cacheResult)

Method Details

getOrCreateBrightImgDownsampled

protected net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getOrCreateBrightImgDownsampled(mpicbg.spim.data.sequence.ViewId vId,
 int[] downsamplingFactors)

getOrCreateDarkImgDownsampled

protected net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType> getOrCreateDarkImgDownsampled(mpicbg.spim.data.sequence.ViewId vId,
 int[] downsamplingFactors)

getSetupImgLoader

public mpicbg.spim.data.sequence.MultiResolutionSetupImgLoader<?> getSetupImgLoader(int setupId)

Specified by:

getSetupImgLoader in interface mpicbg.spim.data.generic.sequence.BasicImgLoader

Specified by:

getSetupImgLoader in interface mpicbg.spim.data.generic.sequence.BasicMultiResolutionImgLoader

Specified by:

getSetupImgLoader in interface mpicbg.spim.data.sequence.ImgLoader

Specified by:

getSetupImgLoader in interface mpicbg.spim.data.sequence.MultiResolutionImgLoader

getWrappedImgLoder

public mpicbg.spim.data.sequence.MultiResolutionImgLoader getWrappedImgLoder()

Specified by:

getWrappedImgLoder in interface FlatfieldCorrectionWrappedImgLoader<mpicbg.spim.data.sequence.MultiResolutionImgLoader>

setActive

public void setActive(boolean active)

Specified by:

setActive in interface FlatfieldCorrectionWrappedImgLoader<mpicbg.spim.data.sequence.MultiResolutionImgLoader>

isActive

public boolean isActive()

Specified by:

isActive in interface FlatfieldCorrectionWrappedImgLoader<mpicbg.spim.data.sequence.MultiResolutionImgLoader>

downsampleHDF5

public static <T extends net.imglib2.type.numeric.RealType<T> & net.imglib2.type.NativeType<T>>
net.imglib2.RandomAccessibleInterval<T> downsampleHDF5(net.imglib2.RandomAccessibleInterval<T> input,
 int[] dsFactor)

downsampling code form WriteSequenceToHdf5, distilled into one method

Type Parameters:

T - the image type

Parameters:

input - image to downsample

dsFactor - factors to downsample by

Returns:

downsampled image

main

public static void main(String[] args)

isCached

public boolean isCached()

Specified by:

isCached in interface FlatfieldCorrectionWrappedImgLoader<mpicbg.spim.data.sequence.MultiResolutionImgLoader>

setCached

public void setCached(boolean cached)

Specified by:

setCached in interface FlatfieldCorrectionWrappedImgLoader<mpicbg.spim.data.sequence.MultiResolutionImgLoader>