Package net.preibisch.mvrecon.fiji.spimdata.imgloaders.flatfield

Class FlatFieldCorrectedRandomAccessibleInterval<O extends net.imglib2.type.numeric.RealType<O>,T extends net.imglib2.type.numeric.RealType<T>,S extends net.imglib2.type.numeric.RealType<S>,R extends net.imglib2.type.numeric.RealType<R>>

java.lang.Object

net.imglib2.AbstractEuclideanSpace

net.imglib2.AbstractInterval

net.preibisch.mvrecon.fiji.spimdata.imgloaders.flatfield.FlatFieldCorrectedRandomAccessibleInterval<O,T,S,R>

All Implemented Interfaces:

Iterable<O>, net.imglib2.Dimensions, net.imglib2.EuclideanSpace, net.imglib2.Interval, net.imglib2.IterableInterval<O>, net.imglib2.IterableRealInterval<O>, net.imglib2.RandomAccessible<O>, net.imglib2.RandomAccessibleInterval<O>, net.imglib2.RealInterval, net.imglib2.Typed<O>

public class FlatFieldCorrectedRandomAccessibleInterval<O extends net.imglib2.type.numeric.RealType<O>,T extends net.imglib2.type.numeric.RealType<T>,S extends net.imglib2.type.numeric.RealType<S>,R extends net.imglib2.type.numeric.RealType<R>>
extends net.imglib2.AbstractInterval
implements net.imglib2.RandomAccessibleInterval<O>

Field Summary

Fields inherited from class net.imglib2.AbstractInterval

max, min

Fields inherited from class net.imglib2.AbstractEuclideanSpace

n

Constructor Summary

Constructors

Constructor	Description
FlatFieldCorrectedRandomAccessibleInterval(O outputType, net.imglib2.RandomAccessibleInterval<T> sourceImg, net.imglib2.RandomAccessibleInterval<S> brightImg, net.imglib2.RandomAccessibleInterval<R> darkImg)

Method Summary

Modifier and Type	Method	Description
static <P extends net.imglib2.type.numeric.RealType<P>, Q extends net.imglib2.type.numeric.RealType<Q>> double	getMeanCorrected(net.imglib2.RandomAccessibleInterval<P> brightImg, net.imglib2.RandomAccessibleInterval<Q> darkImg)
static <P extends net.imglib2.type.numeric.RealType<P>> net.imglib2.util.Pair<Double,Double>	getMinMax(net.imglib2.RandomAccessibleInterval<P> img)
O	getType()
net.imglib2.RandomAccess<O>	randomAccess()
net.imglib2.RandomAccess<O>	randomAccess(net.imglib2.Interval interval)

Methods inherited from class net.imglib2.AbstractInterval

dimension, dimensions, max, max, max, min, min, min, realMax, realMax, realMax, realMin, realMin, realMin, toString

Methods inherited from class net.imglib2.AbstractEuclideanSpace

numDimensions

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.imglib2.Dimensions

dimensions, dimensions, dimensionsAsLongArray, dimensionsAsPoint

Methods inherited from interface net.imglib2.EuclideanSpace

numDimensions

Methods inherited from interface net.imglib2.Interval

dimension, max, max, max, maxAsLongArray, maxAsPoint, min, min, min, minAsLongArray, minAsPoint, realMax, realMin

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface net.imglib2.IterableInterval

localizingSpliterator, spliterator

Methods inherited from interface net.imglib2.IterableRealInterval

firstElement, iterator, parallelStream, stream

Methods inherited from interface net.imglib2.RandomAccessible

getAt, getAt, getAt

Methods inherited from interface net.imglib2.RandomAccessibleInterval

cursor, iterationOrder, localizingCursor, size, view

Methods inherited from interface net.imglib2.RealInterval

maxAsDoubleArray, maxAsRealPoint, minAsDoubleArray, minAsRealPoint, realMax, realMax, realMin, realMin

Constructor Details

FlatFieldCorrectedRandomAccessibleInterval

public FlatFieldCorrectedRandomAccessibleInterval(O outputType,
 net.imglib2.RandomAccessibleInterval<T> sourceImg,
 net.imglib2.RandomAccessibleInterval<S> brightImg,
 net.imglib2.RandomAccessibleInterval<R> darkImg)

Method Details

randomAccess

public net.imglib2.RandomAccess<O> randomAccess()

Specified by:

randomAccess in interface net.imglib2.RandomAccessible<O extends net.imglib2.type.numeric.RealType<O>>

randomAccess

public net.imglib2.RandomAccess<O> randomAccess(net.imglib2.Interval interval)

Specified by:

randomAccess in interface net.imglib2.RandomAccessible<O extends net.imglib2.type.numeric.RealType<O>>

getType

public O getType()

Specified by:

getType in interface net.imglib2.IterableRealInterval<O extends net.imglib2.type.numeric.RealType<O>>

Specified by:

getType in interface net.imglib2.Typed<O extends net.imglib2.type.numeric.RealType<O>>

getMeanCorrected

public static <P extends net.imglib2.type.numeric.RealType<P>,
Q extends net.imglib2.type.numeric.RealType<Q>>
double getMeanCorrected(net.imglib2.RandomAccessibleInterval<P> brightImg,
 net.imglib2.RandomAccessibleInterval<Q> darkImg)

getMinMax

public static <P extends net.imglib2.type.numeric.RealType<P>>
net.imglib2.util.Pair<Double,Double> getMinMax(net.imglib2.RandomAccessibleInterval<P> img)