Package net.preibisch.mvrecon.fiji.datasetmanager

Class MicroManager

java.lang.Object

net.preibisch.mvrecon.fiji.datasetmanager.MicroManager

All Implemented Interfaces:

MultiViewDatasetDefinition

public class MicroManager
extends Object
implements MultiViewDatasetDefinition

Field Summary

Fields

Modifier and Type	Field	Description
static boolean	defaultApplyRotAxis
static String	defaultFirstFile
static boolean	defaultModifyCal
static boolean	defaultRotAxis
static String[]	rotAxes

Constructor Summary

Constructors

Constructor	Description
MicroManager()

Method Summary

Modifier and Type	Method	Description
SpimData2	createDataset(String xmlFileName)	This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.
protected mpicbg.spim.data.sequence.TimePoints	createTimePoints(MultipageTiffReader meta)
protected ArrayList<mpicbg.spim.data.sequence.ViewSetup>	createViewSetups(MultipageTiffReader meta)
String	getExtendedDescription()	An explanation for the user what exactly this MultiViewDatasetDefinition supports and how it needs to be stored.
String	getTitle()	Defines the title under which it will be displayed in the list of available multi-view dataset definitions
static void	main(String[] args)
MicroManager	newInstance()
protected File	queryMMFile()
protected boolean	showDialogs(MultipageTiffReader meta)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.preibisch.mvrecon.fiji.datasetmanager.MultiViewDatasetDefinition

supportsRemoteXMLLocation

Field Details

rotAxes

public static String[] rotAxes

defaultFirstFile

public static String defaultFirstFile

defaultModifyCal

public static boolean defaultModifyCal

defaultRotAxis

public static boolean defaultRotAxis

defaultApplyRotAxis

public static boolean defaultApplyRotAxis

Constructor Details

MicroManager

public MicroManager()

Method Details

getTitle

public String getTitle()

Description copied from interface: MultiViewDatasetDefinition

Defines the title under which it will be displayed in the list of available multi-view dataset definitions

Specified by:

getTitle in interface MultiViewDatasetDefinition

Returns:

the title

getExtendedDescription

public String getExtendedDescription()

Description copied from interface: MultiViewDatasetDefinition

An explanation for the user what exactly this MultiViewDatasetDefinition supports and how it needs to be stored. Up to 15 lines will be displayed with 80 characters each. No newline characters are allowed.

Specified by:

getExtendedDescription in interface MultiViewDatasetDefinition

Returns:

description

createDataset

public SpimData2 createDataset(String xmlFileName)

Description copied from interface: MultiViewDatasetDefinition

This method is supposed to (interactively, ideally ImageJ-macroscriptable) query all necessary data from the user to build up a SpimData object and save it as an XML file.

Specified by:

createDataset in interface MultiViewDatasetDefinition

Parameters:

xmlFileName - - the filename of the XML that was selected (no path!)

Returns:

- the saved SpimData2 object

createViewSetups

protected ArrayList<mpicbg.spim.data.sequence.ViewSetup> createViewSetups(MultipageTiffReader meta)

createTimePoints

protected mpicbg.spim.data.sequence.TimePoints createTimePoints(MultipageTiffReader meta)

showDialogs

protected boolean showDialogs(MultipageTiffReader meta)

queryMMFile

protected File queryMMFile()

newInstance

public MicroManager newInstance()

Specified by:

newInstance in interface MultiViewDatasetDefinition

Returns:

- a new instance of this implementation

main

public static void main(String[] args)