net.imglib2.img

Class AbstractImg<T>

java.lang.Object

net.imglib2.img.AbstractImg<T>

All Implemented Interfaces:

Iterable<T>, Dimensions, EuclideanSpace, Img<T>, Interval, IterableInterval<T>, IterableRealInterval<T>, RandomAccessible<T>, RandomAccessibleInterval<T>, RealInterval, Typed<T>

Direct Known Subclasses:

AbstractListImg, AbstractLongListImg, AbstractNativeImg

public abstract class AbstractImg<T>
extends Object
implements Img<T>

TODO

Author:

Stephan Preibisch, Stephan Saalfeld

Field Summary

Fields

Modifier and Type	Field and Description
protected long[]	dimension
protected long[]	max
protected int	n
protected long	numPixels

Constructor Summary

Constructors

Constructor and Description
AbstractImg(long[] size)

Method Summary

Modifier and Type	Method and Description
long	dimension(int d) Default implementation of Dimensions.dimension(int).
void	dimensions(long[] s) Write the number of pixels in each dimension into long[].
long	max(int d) Get the maximum in dimension d.
void	max(long[] m) Write the maximum of each dimension into long[].
void	max(Positionable m) Sets a Positionable to the maximum of this Interval
long	min(int d) Get the minimum in dimension d.
void	min(long[] m) Write the minimum of each dimension into long[].
void	min(Positionable m) Sets a Positionable to the minimum of this Interval
int	numDimensions() Gets the space's number of dimensions.
static long	numElements(long[] dim)
RandomAccess<T>	randomAccess(Interval interval) Create a random access sampler for integer coordinates.
void	realMax(double[] m) Write the maximum of each dimension into double[].
double	realMax(int d) Get the maximum in dimension d.
void	realMax(RealPositionable m) Sets a RealPositionable to the maximum of this Interval
void	realMin(double[] m) Write the minimum of each dimension into double[].
double	realMin(int d) Get the minimum in dimension d.
void	realMin(RealPositionable m) Sets a RealPositionable to the minimum of this Interval
long	size() Returns the number of elements in this Function.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface net.imglib2.img.Img

copy, factory

Methods inherited from interface net.imglib2.RandomAccessibleInterval

cursor, iterationOrder, localizingCursor, view

Methods inherited from interface net.imglib2.RandomAccessible

getAt, getAt, getAt, randomAccess

Methods inherited from interface net.imglib2.IterableInterval

localizingSpliterator, spliterator

Methods inherited from interface net.imglib2.IterableRealInterval

firstElement, getType, iterator, parallelStream, stream

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface net.imglib2.Interval

maxAsLongArray, maxAsPoint, minAsLongArray, minAsPoint

Methods inherited from interface net.imglib2.RealInterval

maxAsDoubleArray, maxAsRealPoint, minAsDoubleArray, minAsRealPoint

Methods inherited from interface net.imglib2.Dimensions

allPositive, allPositive, dimensions, dimensionsAsLongArray, dimensionsAsPoint, verify, verify, verifyAllPositive, verifyAllPositive

Field Detail

n

protected final int n

numPixels

protected long numPixels

dimension

protected final long[] dimension

max

protected final long[] max

Constructor Detail

AbstractImg

public AbstractImg(long[] size)

Method Detail

numElements

public static long numElements(long[] dim)

numDimensions

public int numDimensions()

Description copied from interface: EuclideanSpace

Gets the space's number of dimensions.

Specified by:

numDimensions in interface EuclideanSpace

dimensions

public void dimensions(long[] s)

Description copied from interface: Dimensions

Write the number of pixels in each dimension into long[].

Specified by:

dimensions in interface Dimensions

dimension

public long dimension(int d)

Description copied from interface: Interval

Default implementation of Dimensions.dimension(int).

Specified by:

dimension in interface Dimensions

Specified by:

dimension in interface Interval

size

public long size()

Description copied from interface: IterableRealInterval

Returns the number of elements in this Function.

Specified by:

size in interface IterableRealInterval<T>

Specified by:

size in interface RandomAccessibleInterval<T>

Returns:

number of elements

toString

public String toString()

Overrides:

toString in class Object

realMax

public double realMax(int d)

Description copied from interface: RealInterval

Get the maximum in dimension d.

Specified by:

realMax in interface Interval

Specified by:

realMax in interface RealInterval

Parameters:

d - dimension

Returns:

maximum in dimension d.

realMax

public void realMax(double[] m)

Description copied from interface: RealInterval

Write the maximum of each dimension into double[].

Specified by:

realMax in interface RealInterval

realMax

public void realMax(RealPositionable m)

Description copied from interface: RealInterval

Sets a RealPositionable to the maximum of this Interval

Specified by:

realMax in interface RealInterval

realMin

public double realMin(int d)

Description copied from interface: RealInterval

Get the minimum in dimension d.

Specified by:

realMin in interface Interval

Specified by:

realMin in interface RealInterval

Parameters:

d - dimension

Returns:

minimum in dimension d.

realMin

public void realMin(double[] m)

Description copied from interface: RealInterval

Write the minimum of each dimension into double[].

Specified by:

realMin in interface RealInterval

realMin

public void realMin(RealPositionable m)

Description copied from interface: RealInterval

Sets a RealPositionable to the minimum of this Interval

Specified by:

realMin in interface RealInterval

max

public long max(int d)

Description copied from interface: Interval

Get the maximum in dimension d.

Specified by:

max in interface Interval

Parameters:

d - dimension

Returns:

maximum in dimension d.

max

public void max(long[] m)

Description copied from interface: Interval

Write the maximum of each dimension into long[].

Specified by:

max in interface Interval

max

public void max(Positionable m)

Description copied from interface: Interval

Sets a Positionable to the maximum of this Interval

Specified by:

max in interface Interval

min

public void min(long[] m)

Description copied from interface: Interval

Write the minimum of each dimension into long[].

Specified by:

min in interface Interval

min

public long min(int d)

Description copied from interface: Interval

Get the minimum in dimension d.

Specified by:

min in interface Interval

Parameters:

d - dimension

Returns:

minimum in dimension d.

min

public void min(Positionable m)

Description copied from interface: Interval

Sets a Positionable to the minimum of this Interval

Specified by:

min in interface Interval

randomAccess

public RandomAccess<T> randomAccess(Interval interval)

Description copied from interface: RandomAccessible

Create a random access sampler for integer coordinates.

The returned random access is intended to be used in the specified interval only. Thus, the RandomAccessible may provide optimized versions. If the interval is completely contained in the domain, the random access is guaranteed to provide the same values as that obtained by RandomAccessible.randomAccess() within the interval.

Specified by:

randomAccess in interface RandomAccessible<T>

Parameters:

interval - in which interval you intend to use the random access.

Returns:

random access sampler