Index (ImgLib2 ROI 0.15.0 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y

A

AbstractAdaptingInterval(int) - Constructor for class net.imglib2.roi.Bounds.AbstractAdaptingInterval
AbstractAdaptingRealInterval(int) - Constructor for class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
AbstractIterableRegionOfInterest - Class in net.imglib2.roi: Deprecated.
AbstractIterableRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
AbstractIterableRegionOfInterest.AROIClippedIterableInterval<T extends Type<T>> - Class in net.imglib2.roi: Deprecated.
AbstractIterableRegionOfInterest.AROIIterableInterval<T extends Type<T>> - Class in net.imglib2.roi: Deprecated.
AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor - Class in net.imglib2.roi: Deprecated.
AbstractIterableRegionOfInterest.AROIIterationOrder - Class in net.imglib2.roi: Deprecated.
AbstractLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
AbstractLabeling(long[], LabelingROIStrategyFactory<T>) - Constructor for class net.imglib2.labeling.AbstractLabeling: Deprecated.
AbstractNativeLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
AbstractNativeLabeling(long[], LabelingROIStrategyFactory<T>, LabelingMapping<T>) - Constructor for class net.imglib2.labeling.AbstractNativeLabeling: Deprecated.
AbstractRealMaskPoint - Class in net.imglib2.roi.util
AbstractRealMaskPoint(int) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
AbstractRealMaskPoint(double[]) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
AbstractRealMaskPoint(RealLocalizable) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
AbstractRegionOfInterest - Class in net.imglib2.roi: Deprecated.
AbstractRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
AbstractRegionOfInterest.AROIRandomAccess - Class in net.imglib2.roi: Deprecated.

The AROIRandomAccess inner class implements the random access part of the ROI, allowing random sampling of pixel membership in the ROI.
AbstractWritableBox - Class in net.imglib2.roi.geom.real: Abstract base class for implementations of WritableBox.
AbstractWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableBox: Creates an n-d rectangular RealMask.
AbstractWritableEllipsoid - Class in net.imglib2.roi.geom.real: Abstract base class for WritableEllipsoid implementations.
AbstractWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableEllipsoid: Creates an n-d ellipsoid, where n is determined by the length of the smaller array.
AbstractWritableSphere - Class in net.imglib2.roi.geom.real: Abstract base class for WritableSphere implementations.
AbstractWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableSphere: Creates an n-d sphere.
AbstractWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real: Abstract base class for WritableSuperEllipsoid implementations.
AbstractWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid: Creates an n-d superellipsoid, where n is determined by the length of the smaller array.
add(T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
add(int, T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
add(T) - Method in class net.imglib2.roi.labeling.LabelingType
add(Localizable) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder: Accumulate the given coordinates.
addAll(Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
addAll(int, Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
addAll(Collection<? extends T>) - Method in class net.imglib2.roi.labeling.LabelingType
addPoint(L) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
addPoint(L) - Method in class net.imglib2.roi.geom.real.RealPointSampleListWritableRealPointCollection
addPoint(L) - Method in interface net.imglib2.roi.geom.real.WritableRealPointCollection: Adds a point to the collection.
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D: If the given vertex has more than 2 dimensions, the higher dimensions will be ignored.
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
addVertex(int, double[]) - Method in interface net.imglib2.roi.geom.real.WritablePolygon2D: Deprecated.
Use WritablePolyshape.addVertex(int, RealLocalizable) instead.
addVertex(int, RealLocalizable) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape: Adds a vertex at the given index.
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Insert a point into the polygon at the given index
addVertices(int, Collection<RealLocalizable>) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
addVertices(int, Collection<RealLocalizable>) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
addVertices(int, Collection<RealLocalizable>) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape: Adds vertices starting at the given index.
allMask(int) - Static method in class net.imglib2.roi.Masks: Creates a Mask which returns true for all locations.
allRealMask(int) - Static method in class net.imglib2.roi.Masks: Creates a RealMask which returns true for all locations.
and(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
AND - Static variable in class net.imglib2.roi.Bounds
and(B) - Method in class net.imglib2.roi.Bounds
and(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.

Make the region the union of the current and this
and(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
and(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.MaskInterval
and(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
and(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
and(MaskInterval, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
and(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
and(RealMaskRealInterval, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
AND - Static variable in class net.imglib2.roi.Operators
and(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
and(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMaskRealInterval
AngleRegionOfInterest - Class in net.imglib2.roi: Deprecated.
AngleRegionOfInterest() - Constructor for class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
AngleRegionOfInterest(double[], double[], double[]) - Constructor for class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
apply(B, B) - Method in interface net.imglib2.roi.Bounds.BinaryBoundsOperator
apply(B) - Method in interface net.imglib2.roi.Bounds.UnaryBoundsOperator
apply(Predicate<? super Localizable>, Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
apply(Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
applyInterval(Predicate<? super Localizable>, Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
applyInterval(Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
applyReal(Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
applyReal(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
applyReal(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
applyRealInterval(Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
applyRealInterval(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
applyRealInterval(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
arg0() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
arg0() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
arg0() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
arg0() - Method in interface net.imglib2.roi.composite.UnaryCompositeMaskPredicate
arg1() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
AROIClippedIterableInterval(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
AROICursor(AbstractIterableRegionOfInterest.AROIIterableInterval<T>.AROICursor) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
AROICursor() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
AROIIterableInterval(RandomAccessible<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
AROIIterationOrder() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterationOrder: Deprecated.
AROIRandomAccess(AbstractRegionOfInterest.AROIRandomAccess) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
AROIRandomAccess() - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.

B

bck(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
bck(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
bck(int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
bck(int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
bck(int) - Method in class net.imglib2.roi.util.PositionableInterval
bck(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
BinaryCompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite: A CompositeMaskPredicate with a binary operator and two operands.
BinaryMaskOperator(BinaryOperator<BoundaryType>, Bounds.BinaryBoundsOperator, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.Operators.BinaryMaskOperator
BinaryMaskRegionOfInterest<T extends BitType,I extends RandomAccessibleInterval<T>> - Class in net.imglib2.roi: Deprecated.
BinaryMaskRegionOfInterest(I) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
BinaryMaskRegionOfInterest.BMROIIterableInterval<TT extends Type<TT>> - Class in net.imglib2.roi: Deprecated.
BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor - Class in net.imglib2.roi: Deprecated.

The cursor works by managing a cursor from the original image.
BinaryMaskRegionOfInterest.BMROIIterationOrder - Class in net.imglib2.roi: Deprecated.
BMROICursor() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
BMROIIterableInterval(RandomAccess<TT>) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
BMROIIterationOrder() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder: Deprecated.
Boundary<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary: An IterableRegion of the boundary pixels of a source boolean RandomAccessibleInterval.
Boundary(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.Boundary
Boundary(RandomAccessibleInterval<T>, Boundary.StructuringElement) - Constructor for class net.imglib2.roi.boundary.Boundary
Boundary.StructuringElement - Enum in net.imglib2.roi.boundary
BoundaryRandomAccess4<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary: A BoolType RandomAccess on a BooleanType source RandomAccessibleInterval.
BoundaryRandomAccess4(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess4
BoundaryRandomAccess8<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary: A BoolType RandomAccess on a BooleanType source RandomAccessibleInterval.
BoundaryRandomAccess8(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess8
BoundaryType - Enum in net.imglib2.roi: Defines the edge behavior of the Mask.
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
boundaryType() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
boundaryType() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableBox
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableEllipsoid
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableSphere
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid
boundaryType() - Method in interface net.imglib2.roi.geom.real.Line
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableBox
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableEllipsoid
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritablePolygon2D
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableSphere
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableSuperEllipsoid
boundaryType() - Method in interface net.imglib2.roi.geom.real.PointMask
boundaryType() - Method in interface net.imglib2.roi.geom.real.Polyline
boundaryType() - Method in interface net.imglib2.roi.geom.real.RealPointCollection
boundaryType() - Method in class net.imglib2.roi.mask.integer.DefaultMask
boundaryType() - Method in class net.imglib2.roi.mask.integer.DefaultMaskInterval
boundaryType() - Method in class net.imglib2.roi.mask.real.DefaultRealMask
boundaryType() - Method in class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
boundaryType() - Method in interface net.imglib2.roi.MaskPredicate: Returns the boundary behavior of this Mask.
BoundingBox - Class in net.imglib2.labeling: Deprecated.
BoundingBox(int) - Constructor for class net.imglib2.labeling.BoundingBox: Deprecated.
BoundingBox - Class in net.imglib2.roi.labeling: A bounding box Interval around a region that is build by aggregating positions contained in the region.
BoundingBox(int) - Constructor for class net.imglib2.roi.labeling.BoundingBox
Bounds> - Class in net.imglib2.roi: Operations on mask bounds.
Bounds(I) - Constructor for class net.imglib2.roi.Bounds
Bounds.AbstractAdaptingInterval - Class in net.imglib2.roi: Abstract base class which adapts to changes in source interval, leaving Bounds.AbstractAdaptingInterval.minMax(long[], long[]) to be implemented by derived classes.
Bounds.AbstractAdaptingRealInterval - Class in net.imglib2.roi: Abstract base class for bounds which adapt to changes in the source interval, leaving the Bounds.AbstractAdaptingRealInterval.realMinMax(double[], double[]) method to be implemented by derived classes.
Bounds.BinaryBoundsOperator - Interface in net.imglib2.roi
Bounds.IntBounds - Class in net.imglib2.roi: Implement Bounds for integer intervals.
Bounds.IntersectionInterval - Class in net.imglib2.roi: The intersection of two intervals.
Bounds.IntersectionRealInterval - Class in net.imglib2.roi: The intersection of two intervals.
Bounds.RealBounds - Class in net.imglib2.roi: Implement Bounds for real intervals.
Bounds.RealTransformRealInterval - Class in net.imglib2.roi: The Bounds for a transformed source.
Bounds.SmallestContainingInterval - Class in net.imglib2.roi: Represents the smallest Interval completely containing a specified RealInterval.
Bounds.UnaryBoundsOperator - Interface in net.imglib2.roi
Bounds.UnionInterval - Class in net.imglib2.roi: The union of two intervals.
Bounds.UnionRealInterval - Class in net.imglib2.roi: The union of two intervals.
Box - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines an n-d box, cuboid, hyperrectangle, etc.
bresenham(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMaths

C

cached_first_element - Variable in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
center - Variable in class net.imglib2.roi.geom.real.AbstractWritableSphere
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere: Returns the center.
center - Variable in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid: Returns the center.
center() - Method in interface net.imglib2.roi.geom.real.Box: Returns the center of the Box.
center() - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid: Returns the center of the superellipsoid
center() - Method in interface net.imglib2.roi.geom.real.WritableBox
center() - Method in interface net.imglib2.roi.geom.real.WritableSuperEllipsoid
checkDimensions(Object...) - Static method in class net.imglib2.roi.Operators: Checks that all args have same dimensionality.
clear() - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
clear() - Method in class net.imglib2.roi.labeling.LabelingType
close() - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
close() - Method in interface net.imglib2.roi.GeneralPathSegmentHandler: Deprecated.
closedBox(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableBox with closed boundaries.
closedEllipsoid(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableEllipsoid with closed boundaries.
closedPolygon2D(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePolygon2D from a list of vertices, with closed boundaries.
closedPolygon2D(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePolygon2D from a list of (x, y) coordinates, with closed boundaries.
closedSphere(double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableSphere with closed boundaries.
closedSuperEllipsoid(double[], double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableSuperEllipsoid with closed boundaries.
ClosedWritableBox - Class in net.imglib2.roi.geom.real: A Box which contains all edge points defined by the min and max values in each dimension.
ClosedWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableBox: Creates an n-d rectangular RealMask in real space.
ClosedWritableEllipsoid - Class in net.imglib2.roi.geom.real: A Ellipsoid which does not contain any edge points, defined by a center and semi-axis lengths.
ClosedWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableEllipsoid: Creates an n-d ellipsoid, where n is determined by the length of the smaller array.
ClosedWritablePolygon2D - Class in net.imglib2.roi.geom.real: A Polygon2D which contains all boundary points, and is defined by the provided vertices.
ClosedWritablePolygon2D(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
ClosedWritablePolygon2D(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
ClosedWritableSphere - Class in net.imglib2.roi.geom.real: A Sphere which contains all boundary points.
ClosedWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableSphere: Creates an n-d sphere.
ClosedWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real: A SuperEllipsoid which contains all edge points.
ClosedWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid: Creates an n-d super ellipsoid, where n is determined by the length of the smaller array
CompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite: A composite MaskPredicate that knows the operator and operands that are used to create it.
CompositeRegionOfInterest - Class in net.imglib2.roi: Deprecated.
CompositeRegionOfInterest(int) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.

Initialize an empty composite region of interest.
CompositeRegionOfInterest(RegionOfInterest) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.

Initialize a composite region of interest with a single ROI
CompositeRegionOfInterest(Collection<RegionOfInterest>) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.
computeStatistics() - Method in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.

Compute all statistics on the labels if cache is dirty.
contains(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
contains(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
contains(double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
contains(double[]) - Method in class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.
contains(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.
contains(double[]) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
contains(Object) - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
contains(Object) - Method in class net.imglib2.roi.labeling.LabelingType
contains(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
contains(double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.
contains(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.
contains(double[]) - Method in interface net.imglib2.roi.RegionOfInterest: Deprecated.

Determine whether a point is a member of the region of interest
containsAll(Collection<?>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
containsAll(Collection<?>) - Method in class net.imglib2.roi.labeling.LabelingType
copy() - Method in interface net.imglib2.labeling.Labeling: Deprecated.

Copy method
copy() - Method in class net.imglib2.labeling.LabelingConvertedCursor: Deprecated.
copy() - Method in class net.imglib2.labeling.LabelingConvertedRandomAccess: Deprecated.
copy() - Method in class net.imglib2.labeling.LabelingType: Deprecated.
copy() - Method in class net.imglib2.labeling.LabelingView: Deprecated.
copy() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
copy() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
copy() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
copy() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
copy() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess4
copy() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess8
copy() - Method in class net.imglib2.roi.labeling.LabelingType: Note: The copy shares the mapping of this LabelingType.
copy() - Method in class net.imglib2.roi.labeling.LabelRegion: Create a copy of this LabelRegion.
copy() - Method in class net.imglib2.roi.labeling.LabelRegionCursor
copy() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
copy() - Method in class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
copy() - Method in class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
copy() - Method in interface net.imglib2.roi.PositionableIterableInterval: Make a copy of this PositionableIterableInterval which can be positioned independently.
copy() - Method in interface net.imglib2.roi.PositionableIterableRegion: Make a copy of this PositionableIterableInterval which can be positioned independently.
copy() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
copy() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
copy() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
copy() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
copy() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
copy() - Method in class net.imglib2.roi.util.SamplingCursor
copyCursor() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
copyCursor() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
copyCursor() - Method in class net.imglib2.roi.labeling.LabelRegionCursor
copyCursor() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
copyCursor() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
copyCursor() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
copyCursor() - Method in class net.imglib2.roi.util.SamplingCursor
copyRandomAccess() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
copyRandomAccess() - Method in class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
copyRealRandomAccess() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
copyRealRandomAccess() - Method in class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
countTrue(RandomAccessibleInterval) - Static method in class net.imglib2.roi.Regions: Counts the number of true pixels in the given region.
create(long[]) - Method in class net.imglib2.labeling.LabelingFactory: Deprecated.
create(int[]) - Method in class net.imglib2.labeling.LabelingFactory: Deprecated.
create(Interval) - Method in class net.imglib2.labeling.LabelingFactory: Deprecated.
create(F) - Method in class net.imglib2.labeling.LabelingOutOfBoundsRandomAccessFactory: Deprecated.
create(RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.util.IterableRandomAccessibleRegion: Deprecated.
create(IterableInterval<Void>, RandomAccessible<T>) - Static method in class net.imglib2.roi.util.SamplingIterableInterval
createIterableRegionOfInterest(T) - Method in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
createIterableRegionOfInterest(T) - Method in interface net.imglib2.labeling.LabelingROIStrategy: Deprecated.

An iterable region of interest, optimized for iteration over the pixels in the region of interest.
createLabelingROIStrategy(L) - Method in class net.imglib2.labeling.DefaultROIStrategyFactory: Deprecated.
createLabelingROIStrategy(L) - Method in interface net.imglib2.labeling.LabelingROIStrategyFactory: Deprecated.
createRegionOfInterest(T) - Method in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
createRegionOfInterest(T) - Method in interface net.imglib2.labeling.LabelingROIStrategy: Deprecated.

A region of interest designed to be queried for point-membership
createVariable() - Method in class net.imglib2.labeling.LabelingType: Deprecated.
createVariable() - Method in class net.imglib2.roi.labeling.LabelingType: Note: This creates an "independent" LabelingType instance that has its own LabelingMapping.
createVariable(Class<? extends L>) - Method in class net.imglib2.roi.labeling.LabelingType: Creates a new LabelingType based on the underlying IntegerType of the existing LabelingType with a different label type L
cubicTo(double, double, double, double, double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
cubicTo(double, double, double, double, double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler: Deprecated.
curr - Variable in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
currentOffset - Variable in class net.imglib2.roi.util.PositionableInterval
cursor() - Method in class net.imglib2.labeling.LabelingView: Deprecated.
cursor(Interval) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
cursor() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
cursor(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
cursor() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
cursor() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
cursor() - Method in class net.imglib2.roi.geom.integer.IterableLine
cursor() - Method in class net.imglib2.roi.labeling.ImgLabeling
cursor(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
cursor() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
cursor() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
cursor() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
cursor() - Method in class net.imglib2.roi.util.SamplingIterableInterval

D

DefaultBinaryCompositeMask - Class in net.imglib2.roi.composite: A Mask which is the result of an operation on two Predicates.
DefaultBinaryCompositeMask(Operators.BinaryMaskOperator, Predicate<? super Localizable>, Predicate<? super Localizable>, int, BoundaryType, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultBinaryCompositeMask
DefaultBinaryCompositeMaskInterval - Class in net.imglib2.roi.composite: A MaskInterval which results from an operation on two Predicates.
DefaultBinaryCompositeMaskInterval(Operators.BinaryMaskOperator, Predicate<? super Localizable>, Predicate<? super Localizable>, Interval, BoundaryType, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
DefaultBinaryCompositeRealMask - Class in net.imglib2.roi.composite: A RealMask which is the result of an operation on two Predicates.
DefaultBinaryCompositeRealMask(Operators.BinaryMaskOperator, Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>, int, BoundaryType, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
DefaultBinaryCompositeRealMaskRealInterval - Class in net.imglib2.roi.composite: A RealMaskRealInterval which results from an operation on two Predicates.
DefaultBinaryCompositeRealMaskRealInterval(Operators.BinaryMaskOperator, Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>, RealInterval, BoundaryType, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
DefaultMask - Class in net.imglib2.roi.mask.integer
DefaultMask(int, BoundaryType, Predicate<? super Localizable>, KnownConstant) - Constructor for class net.imglib2.roi.mask.integer.DefaultMask
DefaultMaskInterval - Class in net.imglib2.roi.mask.integer
DefaultMaskInterval(Interval, BoundaryType, Predicate<? super Localizable>, KnownConstant) - Constructor for class net.imglib2.roi.mask.integer.DefaultMaskInterval
DefaultRealMask - Class in net.imglib2.roi.mask.real
DefaultRealMask(int, BoundaryType, Predicate<? super RealLocalizable>, KnownConstant) - Constructor for class net.imglib2.roi.mask.real.DefaultRealMask
DefaultRealMaskRealInterval - Class in net.imglib2.roi.mask.real
DefaultRealMaskRealInterval(RealInterval, BoundaryType, Predicate<? super RealLocalizable>, KnownConstant) - Constructor for class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
DefaultROIStrategy<T extends Comparable<T>,L extends Labeling<T>> - Class in net.imglib2.labeling: Deprecated.
DefaultROIStrategy(L) - Constructor for class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
DefaultROIStrategyFactory<T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
DefaultROIStrategyFactory() - Constructor for class net.imglib2.labeling.DefaultROIStrategyFactory: Deprecated.
DefaultUnaryCompositeMask - Class in net.imglib2.roi.composite: A Mask which is the result of an operation on a Predicate.
DefaultUnaryCompositeMask(Operators.UnaryMaskOperator, Predicate<? super Localizable>, int, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultUnaryCompositeMask
DefaultUnaryCompositeMaskInterval - Class in net.imglib2.roi.composite: A MaskInterval which is the result of an operation on a Predicate.
DefaultUnaryCompositeMaskInterval(Operators.UnaryMaskOperator, Predicate<? super Localizable>, Interval, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
DefaultUnaryCompositeRealMask - Class in net.imglib2.roi.composite: A RealMask which is the result of an operation on a Predicate.
DefaultUnaryCompositeRealMask(Operators.UnaryMaskOperator, Predicate<? super RealLocalizable>, int, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
DefaultUnaryCompositeRealMaskRealInterval - Class in net.imglib2.roi.composite: A RealMaskRealInterval which is the result of an operation on a Predicate.
DefaultUnaryCompositeRealMaskRealInterval(Operators.UnaryMaskOperator, Predicate<? super RealLocalizable>, RealInterval, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
DefaultWritableLine - Class in net.imglib2.roi.geom.real: Represents a line segment as defined by two end points, which can be embedded in n-dimensional space.
DefaultWritableLine(RealLocalizable, RealLocalizable) - Constructor for class net.imglib2.roi.geom.real.DefaultWritableLine: Creates a line with endpoints at the given positions.
DefaultWritableLine(double[], double[], boolean) - Constructor for class net.imglib2.roi.geom.real.DefaultWritableLine: Creates a line with endpoints at the given positions.
DefaultWritablePointMask - Class in net.imglib2.roi.geom.real: A WritablePointMask specified by the given location.
DefaultWritablePointMask(RealLocalizable) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePointMask: Creates a WritablePointMask with the given point, such that only that point is contained in the Mask.
DefaultWritablePointMask(double[]) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePointMask: Creates a WritablePointMask with given array, such that only that location is contained in the Mask.
DefaultWritablePolygon2D - Class in net.imglib2.roi.geom.real: A DefaultWritablePolygon2D defined by the given vertices.
DefaultWritablePolygon2D(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolygon2D: Creates a 2D polygon with the provided vertices.
DefaultWritablePolygon2D(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolygon2D: Creates a 2D polygon with vertices at the provided x, y coordinates.
DefaultWritablePolygon2D.VertexList - Class in net.imglib2.roi.geom.real
DefaultWritablePolyline - Class in net.imglib2.roi.geom.real: A polyline, which can be embedded in n-dimensional space.
DefaultWritablePolyline(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolyline: Creates a polyline with the specified vertices.
DefaultWritableRealPointCollection<L extends RealLocalizable> - Class in net.imglib2.roi.geom.real: RealPointCollection backed by a Map.
DefaultWritableRealPointCollection(Map<TDoubleArrayList, L>) - Constructor for class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection: Creates a point collection which includes points in the given Map.
DefaultWritableRealPointCollection(Collection<L>) - Constructor for class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection: Creates a point collection which includes points in the given Collection.
dimension(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
dimension(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
dimension(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
dimension(int) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
dimension(int) - Method in class net.imglib2.roi.labeling.LabelRegion
dimension(int) - Method in class net.imglib2.roi.util.PositionableInterval
dimensions(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
dimensions(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
dimensions(long[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
dimensions(long[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
dimensions(Positionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
dimensions(long[]) - Method in class net.imglib2.roi.labeling.LabelRegion
dimensions(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
distancePowered(RealLocalizable) - Method in class net.imglib2.roi.geom.real.AbstractWritableEllipsoid: Computes the unit distance squared between a given location and the center of the ellipsoid.
distancePowered(RealLocalizable) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
distancePowered(RealLocalizable) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid: Computes the unit distance between a given location and the center of the superellipsoid.

E

EllipseRegionOfInterest - Class in net.imglib2.roi: Deprecated.
EllipseRegionOfInterest() - Constructor for class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Constructor of a 2-dimensional ellipse centered at the origin with radius 0.
EllipseRegionOfInterest(int) - Constructor for class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Constructor of an N-dimensional hyper-ellipse centered at the origin with radius 0.
EllipseRegionOfInterest(RealLocalizable, double[]) - Constructor for class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Construct an N-dimensional hyper-ellipse centered at the origin with a given radius.
EllipseRegionOfInterest(RealLocalizable) - Constructor for class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Construct an N-dimensional hyper-ellipse centered at an origin with zero radius
EllipseRegionOfInterest(RealLocalizable, double) - Constructor for class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Construct a hyper-circle centered at an origin with the same radius for all dimensions.
Ellipsoid - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines an n-d ellipsoid.
emptyInterval(int) - Static method in class net.imglib2.roi.Masks: Creates an Interval which has min > max for all dimensions.
emptyList() - Method in class net.imglib2.labeling.LabelingMapping: Deprecated.
emptyMask(int) - Static method in class net.imglib2.roi.Masks: Creates a Mask which returns false for every location.
emptyMaskInterval(int) - Static method in class net.imglib2.roi.Masks: Creates a MaskInterval which returns false for every location and has empty interval bounds (i.e.
emptyRealInterval(int) - Static method in class net.imglib2.roi.Masks: Creates an RealInterval which has min > max for all dimensions.
emptyRealMask(int) - Static method in class net.imglib2.roi.Masks: Creates a RealMask which returns false for every location.
emptyRealMaskRealInterval(int) - Static method in class net.imglib2.roi.Masks: Creates a RealMaskRealInterval which returns false for every location and has empty interval bounds (i.e.
emptySet() - Method in class net.imglib2.roi.labeling.LabelingMapping
endpointOne() - Method in class net.imglib2.roi.geom.real.DefaultWritableLine: Returns a RealLocalizableRealPositionable positioned at the same location as the first location passed to the constructor.
endpointOne() - Method in interface net.imglib2.roi.geom.real.Line: Returns the first endpoint.
endpointOne() - Method in interface net.imglib2.roi.geom.real.WritableLine
endpointTwo() - Method in class net.imglib2.roi.geom.real.DefaultWritableLine: Returns a RealLocalizableRealPositionable positioned at the same location as the second location passed to the constructor.
endpointTwo() - Method in interface net.imglib2.roi.geom.real.Line: Returns the second endpoint.
endpointTwo() - Method in interface net.imglib2.roi.geom.real.WritableLine
equals(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
equals(Object) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterationOrder: Deprecated.
equals(Object) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder: Deprecated.
equals(Object) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
equals(Object) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
equals(Object) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
equals(Object) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
equals(Object) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
equals(Object) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
equals(Object) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
equals(Object) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
equals(Object) - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
equals(Object) - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
equals(Object) - Method in class net.imglib2.roi.geom.integer.IterableLine
equals(Object) - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
equals(Object) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
equals(Object) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
equals(Object) - Method in interface net.imglib2.roi.geom.real.Box: Determines whether this box describes the same region as another one.
equals(Box, Box) - Static method in interface net.imglib2.roi.geom.real.Box: Determines whether two boxes describe the same region.
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritableLine
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritablePointMask
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
equals(Object) - Method in interface net.imglib2.roi.geom.real.Line: Determines whether this line describes the same region as another one.
equals(Line, Line) - Static method in interface net.imglib2.roi.geom.real.Line: Determines whether two lines describe the same region.
equals(Object) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
equals(Object) - Method in interface net.imglib2.roi.geom.real.PointMask: Determines whether this point describes the same region as another one.
equals(PointMask, PointMask) - Static method in interface net.imglib2.roi.geom.real.PointMask: Determines whether two points describe the same region.
equals(Object) - Method in interface net.imglib2.roi.geom.real.Polygon2D: Determines whether this polygon describes the same region as another one.
equals(Object) - Method in interface net.imglib2.roi.geom.real.Polyline: Determines whether this polyline describes the same region as another one.
equals(Polyshape, Polyshape) - Static method in interface net.imglib2.roi.geom.real.Polyshape: Determines whether two polyshapes describe the same region.
equals(Object) - Method in interface net.imglib2.roi.geom.real.RealPointCollection: Determines whether this point collection describes the same region as another one.
equals(RealPointCollection<?>, RealPointCollection<?>) - Static method in interface net.imglib2.roi.geom.real.RealPointCollection: Determines whether two point collections describe the same region.
equals(Object) - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid: Determines whether this superellipsoid describes the same region as another one.
equals(SuperEllipsoid, SuperEllipsoid) - Static method in interface net.imglib2.roi.geom.real.SuperEllipsoid: Determines whether two superellipsoid describe the same region.
equals(Object) - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
equals(Object) - Method in class net.imglib2.roi.labeling.LabelingType
equals(Object) - Method in interface net.imglib2.roi.MaskPredicate: Determines whether two masks describe the same region in the same way.
equals(Object) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
exponent() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
exponent - Variable in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
exponent() - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
exponent() - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid: Returns the exponent of this superellipsoid

F

factory() - Method in interface net.imglib2.labeling.Labeling: Deprecated.

Factory
factory() - Method in class net.imglib2.labeling.LabelingView: Deprecated.
factory() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
findStripeIndex(double) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Find the index of the stripe whose yMin is lower or the same as the given y
finish() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
firstElement() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
firstElement() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
firstElement() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
firstElement() - Method in class net.imglib2.roi.geom.integer.IterableLine
firstElement() - Method in class net.imglib2.roi.labeling.ImgLabeling
firstElement() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
firstElement() - Method in class net.imglib2.roi.util.SamplingIterableInterval
fromImageAndLabels(RandomAccessibleInterval, List<T>) - Static method in class net.imglib2.roi.labeling.ImgLabeling: Creates a non empty ImgLabeling, from an index image and a list of labels.
fromImageAndLabelSets(RandomAccessibleInterval, List<Set<T>>) - Static method in class net.imglib2.roi.labeling.ImgLabeling: Creates a non empty ImgLabeling, from an index image and a list of label sets.
fwd() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
fwd(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
fwd() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
fwd(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
fwd(int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
fwd() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
fwd() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeIterator
fwd() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
fwd() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
fwd(int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
fwd(int) - Method in class net.imglib2.roi.util.PositionableInterval
fwd() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
fwd(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper

G

GeneralPathRegionOfInterest - Class in net.imglib2.roi: Deprecated.
GeneralPathRegionOfInterest() - Constructor for class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
GeneralPathSegmentHandler - Interface in net.imglib2.roi: Deprecated.
generation - Variable in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
generation - Variable in class net.imglib2.labeling.LabelingType: Deprecated.
generation - Variable in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
generation - Variable in class net.imglib2.roi.labeling.LabelingType
GeomMasks - Class in net.imglib2.roi.geom: Utility class for creating MaskPredicates.
GeomMaths - Class in net.imglib2.roi.geom: Utility class for operations involving geometric shapes.
GeomMaths() - Constructor for class net.imglib2.roi.geom.GeomMaths
get() - Method in class net.imglib2.labeling.LabelingConvertedCursor: Deprecated.
get() - Method in class net.imglib2.labeling.LabelingConvertedRandomAccess: Deprecated.
get(int) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
get() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
get() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
get() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
get() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess4
get() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess8
get() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
get() - Method in class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
get() - Method in class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
get() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
get() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
get() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
get() - Method in class net.imglib2.roi.util.SamplingCursor
getArea(T) - Method in class net.imglib2.labeling.AbstractLabeling: Deprecated.

Return the area or suitable N-d analog of the labeled object
getArea(T) - Method in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
getArea(T) - Method in interface net.imglib2.labeling.Labeling: Deprecated.

Return the area or suitable N-d analog of the labeled object
getArea(T) - Method in interface net.imglib2.labeling.LabelingROIStrategy: Deprecated.

Return the area of the labeled object in units of pixels or the volume of the labeled object in voxels (or the hyper-volume of the 4/5-d object in ?toxels? or ?spectracels? or ?spectratoxels?)
getArea(L) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
getBoundingBoxMax() - Method in interface net.imglib2.roi.util.iterationcode.IterationCode
getBoundingBoxMax() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
getBoundingBoxMin() - Method in interface net.imglib2.roi.util.iterationcode.IterationCode
getBoundingBoxMin() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
getBounds(Collection<? extends Localizable>) - Static method in class net.imglib2.roi.geom.GeomMaths
getBoundsReal(Collection<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMaths
getBoundsReal(double[][]) - Static method in class net.imglib2.roi.geom.GeomMaths: Finds the smallest RealInterval which contains all vertices.
getBoundsReal(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMaths: Finds the smallest RealInterval which contains all x, y coordinates.
getCachedSize() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
getCachedSize() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.

Scan the image, counting bits once, then return the cached value.
getCenter(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
getCenter(int) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
getCenterOfMass() - Method in class net.imglib2.roi.labeling.LabelRegion
getDimensions() - Method in class net.imglib2.labeling.BoundingBox: Deprecated.
getDoublePosition(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
getDoublePosition(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
getDoublePosition(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
getDoublePosition(int) - Method in class net.imglib2.roi.util.OffsetLocalizable
getDoublePosition(int) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
getDoublePosition(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
getEdgeEnd(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Get the coordinates of the second vertex of the indexed edge
getEdges(double[], double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Get the closest edge to the left of this one
getEdgeStart(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Get the coordinates of the first vertex of the indexed edge
getExistingLabels() - Method in class net.imglib2.roi.labeling.LabelRegions: Get the set of labels which actually occur at some pixel in the labeling.
getExtent(RealPositionable) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Write the extent into a RealPositionable
getExtent(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Copy the extents of the rectangle into the array provided
getExtent(int) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Get the extent of the rectangle in one dimension
getExtents(T, long[], long[]) - Method in class net.imglib2.labeling.AbstractLabeling: Deprecated.

find the coordinates of the bounding box around the given label.
getExtents(long[], long[]) - Method in class net.imglib2.labeling.BoundingBox: Deprecated.

the minimum and maximum extents of the box
getExtents(T, long[], long[]) - Method in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
getExtents(T, long[], long[]) - Method in interface net.imglib2.labeling.Labeling: Deprecated.

find the coordinates of the bounding box around the given label.
getExtents(T, long[], long[]) - Method in interface net.imglib2.labeling.LabelingROIStrategy: Deprecated.

Get the extents of the bounding box around the labeled object
getExtents(L, long[], long[]) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
getExtrema(long[], long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.

Get the minimum and maximum corners of a bounding hypercube around all points in the ROI.
getExtrema(long[], long[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.
getExtrema(long[], long[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.
getExtrema(long[], long[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.
getFirstPosition() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
getFirstRelativePosition() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
getFloatPosition(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
getFloatPosition(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
getFloatPosition(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
getFloatPosition(int) - Method in class net.imglib2.roi.util.OffsetLocalizable
getFloatPosition(int) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
getFloatPosition(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
getGeneralPath() - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
getGeneration() - Method in class net.imglib2.roi.labeling.LabelingType: The underlying storage has an associated generation which is incremented every time the storage is modified.
getImg() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder: Deprecated.
getImg() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
getIndex() - Method in class net.imglib2.labeling.LabelingType: Deprecated.
getIndex() - Method in class net.imglib2.roi.labeling.LabelingType
getIndexedLabels() - Method in class net.imglib2.roi.labeling.OverlappingLabels: Get the list of labels for this confusion matrix.
getIndexImg() - Method in class net.imglib2.roi.labeling.ImgLabeling
getIntPosition(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
getIntPosition(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
getIntPosition(int) - Method in class net.imglib2.roi.util.OffsetLocalizable
getIntPosition(int) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
getItcode() - Method in interface net.imglib2.roi.util.iterationcode.IterationCode
getItcode() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
getIterableIntervalOverROI(RandomAccessible<T>) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
getIterableIntervalOverROI(RandomAccessible<TT>) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
getIterableIntervalOverROI(RandomAccessible<T>) - Method in interface net.imglib2.roi.IterableRegionOfInterest: Deprecated.

Given a sampler in the ROI's space, provide an iterable that can make iterators over the space, sampling pixels from the sampler.
getIterableRegionOfInterest(T) - Method in class net.imglib2.labeling.AbstractLabeling: Deprecated.
getIterableRegionOfInterest(T) - Method in interface net.imglib2.labeling.Labeling: Deprecated.

Get a ROI that represents the pixels with the given label
getIterableRegionOfInterest(L) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
getLabel() - Method in class net.imglib2.roi.labeling.LabelRegion
getLabeling() - Method in class net.imglib2.labeling.LabelingType: Deprecated.

Get the labels defined at the type's current pixel or
getLabelingMapping(RandomAccessibleInterval<LabelingType<T>>) - Static method in class net.imglib2.roi.labeling.Labelings: Get a LabelingMapping from any RandomAccessibleInterval on LabelingType.
getLabelRegion(T) - Method in class net.imglib2.roi.labeling.LabelRegions
getLabels() - Method in class net.imglib2.labeling.AbstractLabeling: Deprecated.

Find all labels in the space
getLabels() - Method in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
getLabels() - Method in interface net.imglib2.labeling.Labeling: Deprecated.

Find all labels in the space
getLabels() - Method in class net.imglib2.labeling.LabelingMapping: Deprecated.

TODO
getLabels() - Method in interface net.imglib2.labeling.LabelingROIStrategy: Deprecated.

Find all of the labels used to label pixels.
getLabels() - Method in class net.imglib2.labeling.LabelingView: Deprecated.
getLabels() - Method in class net.imglib2.roi.labeling.LabelingMapping: Return the set of all labels defined in this LabelingMapping.
getLabelSets() - Method in class net.imglib2.roi.labeling.LabelingMapping: Returns a snapshot of the LabelingMapping represented as a list of sets.
getLabelSets() - Method in class net.imglib2.roi.labeling.LabelingMapping.SerialisationAccess: Deprecated.
getLongPosition(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
getLongPosition(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
getLongPosition(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
getLongPosition(int) - Method in class net.imglib2.roi.util.OffsetLocalizable
getLongPosition(int) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
getMapping() - Method in class net.imglib2.labeling.AbstractNativeLabeling: Deprecated.
getMapping() - Method in class net.imglib2.labeling.LabelingType: Deprecated.
getMapping() - Method in interface net.imglib2.labeling.NativeLabeling: Deprecated.
getMapping() - Method in class net.imglib2.roi.labeling.ImgLabeling
getMapping() - Method in class net.imglib2.roi.labeling.LabelingType
getMatrix() - Method in class net.imglib2.roi.labeling.OverlappingLabels: Get the confusion/co-occurrence matrix.
getNormalizedMatrix() - Method in class net.imglib2.roi.labeling.OverlappingLabels: Get the normalized directional confusion matrix.
getOccurringPixelSets(ImgLabeling<T, I>) - Static method in class net.imglib2.roi.labeling.Labelings: Return a Set of occurring pixel values in the ImgLabeling index image.
getOrigin() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
getOrigin(int) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Get a single coordinate of the origin position
getOrigin(RealPositionable) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Get the coordinates of the origin
getOrigin(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.
getOrigin(RealPositionable) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Write the position into a RealPositionable
getOrigin(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Write the origin position to this array
getOrigin(int) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Get one component of the origin position
getPartialOverlap(T, T) - Method in class net.imglib2.roi.labeling.OverlappingLabels: The fraction of ofLabel that overlaps with overlappingLabel.
getPartialOverlapForIndex(int, int) - Method in class net.imglib2.roi.labeling.OverlappingLabels: The fraction of the label at ofLabelIndex that overlaps with the label at overlappingLabelIndex.
getPixelOverlap(T, T) - Method in class net.imglib2.roi.labeling.OverlappingLabels: The number of pixels overlapping between two labels.
getPixelOverlapForIndex(int, int) - Method in class net.imglib2.roi.labeling.OverlappingLabels: The number of pixels overlapping between two labels at the specified indices.
getPoint1(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
getPoint1(int) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
getPoint1(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
getPoint1(int) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
getPoint2(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
getPoint2(int) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
getPoint2(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
getPoint2(int) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
getRadii(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Get the radius along all of the dimensions
getRadius(int) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Get the ellipse radius along the given dimension
getRasterStart(T, long[]) - Method in class net.imglib2.labeling.AbstractLabeling: Deprecated.

Find the first pixel in a raster scan of the object with the given label.
getRasterStart(T, long[]) - Method in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
getRasterStart(T, long[]) - Method in interface net.imglib2.labeling.Labeling: Deprecated.

Find the first pixel in a raster scan of the object with the given label.
getRasterStart(T, long[]) - Method in interface net.imglib2.labeling.LabelingROIStrategy: Deprecated.

The coordinates of the first pixel with the given label when raster scanning through the space.
getRasterStart(L, long[]) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.

Get the minimum and maximum corners of a bounding hypercube using real coordinates (which might have fractional components) The implementer should only override this if the ROI is described in real coordinates.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.

Get the minimum and maximum corners of a bounding hypercube using real coordinates (which might have fractional components)
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.
getRegionOfInterest(T) - Method in class net.imglib2.labeling.AbstractLabeling: Deprecated.
getRegionOfInterest(T) - Method in interface net.imglib2.labeling.Labeling: Deprecated.

Get a region of interest optimized to determine point membership
getRegionOfInterest(L) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
getSize() - Method in interface net.imglib2.roi.util.iterationcode.IterationCode
getSize() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
getSource() - Method in class net.imglib2.roi.mask.integer.MaskAsRandomAccessible
getSource() - Method in class net.imglib2.roi.mask.integer.RandomAccessibleAsMask
getSource() - Method in class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
getSource() - Method in class net.imglib2.roi.mask.real.RealRandomAccessibleAsRealMask
getSrcInterval() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
getStorageImg() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
getTransformToSource() - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
getType() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
getType() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
getType() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
getType() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
getType() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
getType() - Method in class net.imglib2.roi.boundary.Boundary
getType() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess4
getType() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess8
getType() - Method in class net.imglib2.roi.geom.integer.IterableLine
getType() - Method in class net.imglib2.roi.labeling.ImgLabeling
getType() - Method in class net.imglib2.roi.labeling.LabelRegion
getType() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
getType() - Method in class net.imglib2.roi.mask.integer.MaskAsRandomAccessible
getType() - Method in class net.imglib2.roi.mask.integer.MaskIntervalAsRandomAccessibleInterval
getType() - Method in class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
getType() - Method in class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
getType() - Method in class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
getType() - Method in class net.imglib2.roi.mask.real.RealMaskRealIntervalAsRealRandomAccessibleRealInterval
getType() - Method in interface net.imglib2.roi.RegionOfInterest: Deprecated.
getType() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion: Deprecated.
getType() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
getType() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
getType() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
getType() - Method in class net.imglib2.roi.util.SamplingCursor
getType() - Method in class net.imglib2.roi.util.SamplingIterableInterval
getVertex(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Get a vertex by index
getVertexCount() - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

H

hashCode() - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
hashCode() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
hashCode() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
hashCode() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
hashCode() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
hashCode() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
hashCode() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
hashCode() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
hashCode() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
hashCode() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
hashCode() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
hashCode() - Method in class net.imglib2.roi.geom.integer.IterableLine
hashCode() - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
hashCode() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
hashCode() - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
hashCode(Box) - Static method in interface net.imglib2.roi.geom.real.Box: Computes a hash code for a box.
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritableLine
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritablePointMask
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
hashCode(Line) - Static method in interface net.imglib2.roi.geom.real.Line: Computes a hash code for a line.
hashCode() - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
hashCode(PointMask) - Static method in interface net.imglib2.roi.geom.real.PointMask: Computes a hash code for a point.
hashCode(Polygon2D) - Static method in interface net.imglib2.roi.geom.real.Polygon2D: Computes a hash code for a polygon.
hashCode(Polyline) - Static method in interface net.imglib2.roi.geom.real.Polyline: Computes a hash code for a polyline.
hashCode(RealPointCollection<?>) - Static method in interface net.imglib2.roi.geom.real.RealPointCollection: Computes a hash code for a point collection.
hashCode(SuperEllipsoid) - Static method in interface net.imglib2.roi.geom.real.SuperEllipsoid: Computes a hash code for a superellipsoid.
hashCode() - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
hashCode() - Method in class net.imglib2.roi.labeling.LabelingType
hashCode() - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
hasIntersectingLabels(ImgLabeling<T, I>) - Static method in class net.imglib2.roi.labeling.Labelings: Check if the image labeling img has intersecting labels.
hasNext() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
hasNext() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
hasNext() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
hasNext() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeIterator
hasNext() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
hasNext() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
hasNext() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.

I

img - Variable in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
ImgLabeling<T,I extends IntegerType> - Class in net.imglib2.roi.labeling: A labeling backed by a image of integer indices.
ImgLabeling(RandomAccessibleInterval) - Constructor for class net.imglib2.roi.labeling.ImgLabeling
indexOf(List<T>) - Method in class net.imglib2.labeling.LabelingMapping: Deprecated.
indexOf(T[]) - Method in class net.imglib2.labeling.LabelingMapping: Deprecated.
indexOf(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
indexToFragmentProperties - Variable in class net.imglib2.roi.labeling.LabelRegions
initialMax - Variable in class net.imglib2.roi.util.PositionableInterval
initialMin - Variable in class net.imglib2.roi.util.PositionableInterval
inside() - Method in class net.imglib2.roi.boundary.Boundary
inside() - Method in interface net.imglib2.roi.IterableRegion: Get an IterableInterval view of only the pixels contained in the region (having value true).
inside() - Method in class net.imglib2.roi.labeling.LabelRegion
inside() - Method in interface net.imglib2.roi.PositionableIterableRegion: Get an PositionableIterableInterval view of only the pixels contained in the region (having value true).
inside() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion: Deprecated.
inside() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
inside() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
IntBounds(Interval) - Constructor for class net.imglib2.roi.Bounds.IntBounds
intern(List<T>) - Method in class net.imglib2.labeling.LabelingMapping: Deprecated.

Return the canonical list for the given list
intern(T[]) - Method in class net.imglib2.labeling.LabelingMapping: Deprecated.
intern(List<T>) - Method in class net.imglib2.labeling.LabelingType: Deprecated.

This method returns the canonical object for the given labeling.
intern(T) - Method in class net.imglib2.labeling.LabelingType: Deprecated.

Return the canonical labeling object representing the single labeling.
intern(Set<T>) - Method in class net.imglib2.roi.labeling.LabelingMapping: Return the canonical set for the given label set.
InternedList(List<T1>, int, LabelingMapping<T1>) - Constructor for class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
internedLists - Variable in class net.imglib2.labeling.LabelingMapping: Deprecated.
interpolateEdgeXAtY(int, double) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Given an edge and a Y coordinate, find its X coordinate at that Y coordinate.
intersectBounded(Bounds.IntBounds, Bounds.IntBounds) - Method in class net.imglib2.roi.Bounds.IntBounds
intersectBounded(B, B) - Method in class net.imglib2.roi.Bounds: Intersection of two bounded Bounds.
intersectBounded(Bounds.RealBounds, Bounds.RealBounds) - Method in class net.imglib2.roi.Bounds.RealBounds
IntersectionInterval(Interval, Interval) - Constructor for class net.imglib2.roi.Bounds.IntersectionInterval
IntersectionRealInterval(RealInterval, RealInterval) - Constructor for class net.imglib2.roi.Bounds.IntersectionRealInterval
interval() - Method in class net.imglib2.roi.Bounds
interval - Variable in class net.imglib2.roi.geom.real.NNSRealPointCollection
invalidateCachedState() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
invalidateCachedState() - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
isAll() - Method in interface net.imglib2.roi.MaskPredicate: Returns true if Predicate.test(T) is known to always return true.
isContinuous(RealTransform) - Static method in class net.imglib2.roi.Operators.RealTransformMaskOperator: Checks if the given transform is a continuous transform.
isEmpty() - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
isEmpty() - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
isEmpty() - Method in class net.imglib2.roi.labeling.LabelingType
isEmpty() - Method in interface net.imglib2.roi.MaskInterval: Returns true if Predicate.test(T) is known to always return false.
isEmpty() - Method in interface net.imglib2.roi.MaskPredicate: Returns true if Predicate.test(T) is known to always return false.
isEmpty() - Method in interface net.imglib2.roi.RealMaskRealInterval: Returns true if Predicate.test(T) is known to always return false.
isHorizontal(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Determine whether the given edge is horizontal.
isMember(long[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Test to see if an integer position is inside the ellipse.
isUnbounded() - Method in class net.imglib2.roi.Bounds
iterable(RandomAccessibleInterval) - Static method in class net.imglib2.roi.Regions: Obtains an IterableRegion whose iteration consists of only the true pixels of a region (instead of all pixels in bounding box).
IterableLine - Class in net.imglib2.roi.geom.integer: An immutable line sampled on integer position.
IterableLine(Localizable, Localizable) - Constructor for class net.imglib2.roi.geom.integer.IterableLine: Instantiates a new line that goes from start to end points.
IterableRandomAccessibleRegion<T extends BooleanType<T>> - Class in net.imglib2.roi.util: Deprecated.
Use IterableRegionOnBooleanRAI instead.
IterableRandomAccessibleRegion(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.roi.util.IterableRandomAccessibleRegion: Deprecated.
IterableRegion<T extends BooleanType<T>> - Interface in net.imglib2.roi: A region that allows to iterate only the pixels contained in the region (instead of all pixels in bounding box).
IterableRegionOfInterest - Interface in net.imglib2.roi: Deprecated.
IterableRegionOnBooleanRAI<T extends BooleanType<T>> - Class in net.imglib2.roi.util: Wrap a boolean RandomAccessibleInterval as a IterableRegion.
IterableRegionOnBooleanRAI(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.util.IterableRegionOnBooleanRAI
IterableRegionOnBooleanRAI(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.roi.util.IterableRegionOnBooleanRAI
iteratePath(GeneralPathSegmentHandler) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
IterationCode - Interface in net.imglib2.roi.util.iterationcode: Iteration code encodes a bitmask as a set of intervals along dimension 0.
IterationCodeBuilder - Class in net.imglib2.roi.util.iterationcode: Create an IterationCode by accumulating coordinates.
IterationCodeBuilder(int, long) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
IterationCodeCursor - Class in net.imglib2.roi.util.iterationcode: A Cursor<Void> that visits all positions in the bitmask encoded by a given IterationCode.
IterationCodeCursor(IterationCode, long[]) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeCursor
IterationCodeCursor(TIntArrayList, long[]) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeCursor
IterationCodeCursor(IterationCodeCursor) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeCursor
IterationCodeIterator - Class in net.imglib2.roi.util.iterationcode: Iterates all positions in the bitmask encoded by a given IterationCode.
IterationCodeIterator(IterationCode, long[], P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeIterator
IterationCodeIterator(TIntArrayList, long[], P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeIterator
IterationCodeIterator(IterationCodeIterator<?>, P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeIterator
IterationCodeListCursor - Class in net.imglib2.roi.util.iterationcode: A Cursor<Void> that visits all positions in the bitmask encoded by a given list of IterationCodes.
IterationCodeListCursor(ArrayList<TIntArrayList>, long[]) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
IterationCodeListCursor(IterationCodeListCursor) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
IterationCodeListIterator - Class in net.imglib2.roi.util.iterationcode: Iterates a bitmask that is encoded by a list of IterationCodes.
IterationCodeListIterator(List<TIntArrayList>, long[], P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
IterationCodeListIterator(IterationCodeListIterator<?>, P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
iterationOrder() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
iterationOrder() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
iterationOrder() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
iterationOrder() - Method in class net.imglib2.roi.geom.integer.IterableLine
iterationOrder() - Method in class net.imglib2.roi.labeling.ImgLabeling
iterationOrder() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
iterationOrder() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
iterationOrder() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
iterationOrder() - Method in class net.imglib2.roi.util.SamplingIterableInterval
iterator() - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
iterator() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
iterator() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
iterator() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
iterator() - Method in class net.imglib2.roi.geom.integer.IterableLine
iterator() - Method in class net.imglib2.roi.labeling.ImgLabeling
iterator() - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
iterator() - Method in class net.imglib2.roi.labeling.LabelingType: Note: the returned iterator reflects the label set at the time this method was called.
iterator() - Method in class net.imglib2.roi.labeling.LabelRegions
iterator() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
iterator() - Method in class net.imglib2.roi.util.SamplingIterableInterval

J

jumpFwd(long) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
jumpFwd(long, long[], long[], Interval) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.

Jump forward a certain number of steps from the given position.
jumpFwd(long) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
jumpFwd(long) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeIterator
jumpFwd(long) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
jumpFwd(long) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
jumpFwd(long) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.

K

kDTreeRealPointCollection(KDTree<L>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a RealPointCollection from a KDTree.
kDTreeRealPointCollection(Collection<L>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a KDTree-based RealPointCollection from a collection of points.
KDTreeRealPointCollection<L extends RealLocalizable> - Class in net.imglib2.roi.geom.real: A RealPointCollection which checks if points are contained in the collection by performing a NearestNeighborSearch on the provided KDTree.
KDTreeRealPointCollection(Collection<L>) - Constructor for class net.imglib2.roi.geom.real.KDTreeRealPointCollection: Creates a RealPointCollection with the points in the Collection.
KDTreeRealPointCollection(KDTree<L>) - Constructor for class net.imglib2.roi.geom.real.KDTreeRealPointCollection: Creates a RealPointCollection with the points in the KDTree.
knownConstant() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
knownConstant() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
knownConstant() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
knownConstant() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
knownConstant() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
knownConstant() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
knownConstant() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
knownConstant() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
knownConstant() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
knownConstant() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
KnownConstant - Enum in net.imglib2.roi
knownConstant() - Method in class net.imglib2.roi.mask.integer.DefaultMask
knownConstant() - Method in class net.imglib2.roi.mask.integer.DefaultMaskInterval
knownConstant() - Method in class net.imglib2.roi.mask.real.DefaultRealMask
knownConstant() - Method in class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
knownConstant() - Method in interface net.imglib2.roi.MaskPredicate

L

labeling - Variable in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
Labeling<T extends Comparable<T>> - Interface in net.imglib2.labeling: Deprecated.
LabelingConvertedCursor,T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
LabelingConvertedCursor(Cursor, long[], LabelingMapping<T>) - Constructor for class net.imglib2.labeling.LabelingConvertedCursor: Deprecated.
LabelingConvertedRandomAccess,T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
LabelingConvertedRandomAccess(RandomAccess, long[], LabelingMapping<T>) - Constructor for class net.imglib2.labeling.LabelingConvertedRandomAccess: Deprecated.
LabelingFactory<T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
LabelingFactory() - Constructor for class net.imglib2.labeling.LabelingFactory: Deprecated.
LabelingMapping<T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
LabelingMapping(IntegerType<?>) - Constructor for class net.imglib2.labeling.LabelingMapping: Deprecated.
LabelingMapping<T> - Class in net.imglib2.roi.labeling: The LabelingMapping maps a set of labelings of a pixel to an index value which can be more compactly stored than the set of labelings.
LabelingMapping(IntegerType<?>) - Constructor for class net.imglib2.roi.labeling.LabelingMapping: Create a new LabelingMapping that maps label sets to the given integral indexType.
LabelingMapping.InternedList<T1 extends Comparable<T1>> - Class in net.imglib2.labeling: Deprecated.
LabelingMapping.InternedSet<T> - Class in net.imglib2.roi.labeling: Canonical representative for a label set.
LabelingMapping.SerialisationAccess<T> - Class in net.imglib2.roi.labeling: Deprecated.
Use LabelingMapping.getLabelSets() or LabelingMapping.setLabelSets(List) instead.
Internals. Can be derived for implementing de/serialisation of the LabelingMapping.
LabelingOutOfBoundsRandomAccess<T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
LabelingOutOfBoundsRandomAccess(I) - Constructor for class net.imglib2.labeling.LabelingOutOfBoundsRandomAccess: Deprecated.
LabelingOutOfBoundsRandomAccessFactory<T extends Comparable<T>,F extends Labeling<T>> - Class in net.imglib2.labeling: Deprecated.
LabelingOutOfBoundsRandomAccessFactory() - Constructor for class net.imglib2.labeling.LabelingOutOfBoundsRandomAccessFactory: Deprecated.
LabelingROIStrategy<T extends Comparable<T>,L extends Labeling<T>> - Interface in net.imglib2.labeling: Deprecated.
LabelingROIStrategyFactory<T extends Comparable<T>> - Interface in net.imglib2.labeling: Deprecated.
Labelings - Class in net.imglib2.roi.labeling: Utility class for labeling tasks.
Labelings() - Constructor for class net.imglib2.roi.labeling.Labelings
LabelingType<T extends Comparable<T>> - Class in net.imglib2.labeling: Deprecated.
LabelingType(IntegerType<?>, LabelingMapping<T>, long[]) - Constructor for class net.imglib2.labeling.LabelingType: Deprecated.

Constructor for mirroring state with another labeling
LabelingType(IntegerType<?>, LabelingMapping<T>) - Constructor for class net.imglib2.labeling.LabelingType: Deprecated.
LabelingType(List<T>) - Constructor for class net.imglib2.labeling.LabelingType: Deprecated.
LabelingType(T) - Constructor for class net.imglib2.labeling.LabelingType: Deprecated.
LabelingType() - Constructor for class net.imglib2.labeling.LabelingType: Deprecated.
LabelingType<T> - Class in net.imglib2.roi.labeling: The LabelingType represents a labeling of a pixel with zero or more labels of type T.
LabelingType(IntegerType<?>, LabelingMapping<T>, LabelingType.ModCount) - Constructor for class net.imglib2.roi.labeling.LabelingType: Constructor for mirroring state with another labeling
LabelingType.ModCount - Class in net.imglib2.roi.labeling
LabelingView<L extends Comparable<L>> - Class in net.imglib2.labeling: Deprecated.
LabelingView(RandomAccessibleInterval<LabelingType<L>>, LabelingFactory<L>) - Constructor for class net.imglib2.labeling.LabelingView: Deprecated.
LabelRegion<T> - Class in net.imglib2.roi.labeling: Present pixels of a given label in a ImgLabeling as a PositionableIterableRegion.
LabelRegion(LabelRegions<T>, LabelRegions.LabelRegionProperties, T) - Constructor for class net.imglib2.roi.labeling.LabelRegion
LabelRegion(LabelRegion<T>) - Constructor for class net.imglib2.roi.labeling.LabelRegion: Copy constructor.
LabelRegionCursor - Class in net.imglib2.roi.labeling
LabelRegionCursor(ArrayList<TIntArrayList>, long[]) - Constructor for class net.imglib2.roi.labeling.LabelRegionCursor
LabelRegionCursor(LabelRegionCursor) - Constructor for class net.imglib2.roi.labeling.LabelRegionCursor
LabelRegionRandomAccess<T> - Class in net.imglib2.roi.labeling
LabelRegionRandomAccess(LabelRegion<T>, long[]) - Constructor for class net.imglib2.roi.labeling.LabelRegionRandomAccess
LabelRegionRandomAccess(LabelRegion<T>, Interval, long[]) - Constructor for class net.imglib2.roi.labeling.LabelRegionRandomAccess
LabelRegionRandomAccess(LabelRegionRandomAccess<T>) - Constructor for class net.imglib2.roi.labeling.LabelRegionRandomAccess
LabelRegions<T> - Class in net.imglib2.roi.labeling: Provides LabelRegions for all labels of a labeling.
LabelRegions(RandomAccessibleInterval<LabelingType<T>>) - Constructor for class net.imglib2.roi.labeling.LabelRegions
labelsAtIndex(int) - Method in class net.imglib2.roi.labeling.LabelingMapping: Returns the (unmodifiable) set of labels for the given index value.
lastIndexOf(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
line(RealLocalizable, RealLocalizable) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableLine from two RealLocalizable points.
line(double[], double[], boolean) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableLine from two double[] points.
Line - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines a line defined in n-d space.
lineContains(double[], double[], RealLocalizable, int) - Static method in class net.imglib2.roi.geom.GeomMaths: Tests if the point given point is on a line.
LineRegionOfInterest - Class in net.imglib2.roi: Deprecated.
LineRegionOfInterest(double[], double[]) - Constructor for class net.imglib2.roi.LineRegionOfInterest: Deprecated.
lineTo(double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
lineTo(double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler: Deprecated.
listAtIndex(int) - Method in class net.imglib2.labeling.LabelingMapping: Deprecated.
listIterator() - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
listIterator(int) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
listsByIndex - Variable in class net.imglib2.labeling.LabelingMapping: Deprecated.
localize(float[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
localize(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
localize(int[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
localize(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
localize(float[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
localize(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
localize(long[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
localize(int[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
localize(long[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
localize(float[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
localize(double[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
localize(float[]) - Method in class net.imglib2.roi.util.OffsetLocalizable
localize(double[]) - Method in class net.imglib2.roi.util.OffsetLocalizable
localize(int[]) - Method in class net.imglib2.roi.util.OffsetLocalizable
localize(long[]) - Method in class net.imglib2.roi.util.OffsetLocalizable
localize(float[]) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
localize(double[]) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
localize(int[]) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
localize(long[]) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
localize(float[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
localize(double[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
localizingCursor() - Method in class net.imglib2.labeling.LabelingView: Deprecated.
localizingCursor(Interval) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
localizingCursor() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
localizingCursor(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
localizingCursor() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
localizingCursor() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
localizingCursor() - Method in class net.imglib2.roi.geom.integer.IterableLine
localizingCursor() - Method in class net.imglib2.roi.labeling.ImgLabeling
localizingCursor(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
localizingCursor() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
localizingCursor() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
localizingCursor() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
localizingCursor() - Method in class net.imglib2.roi.util.SamplingIterableInterval

M

m_strategy - Variable in class net.imglib2.labeling.LabelingView: Deprecated.
makeRoom(int, int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D.VertexList
mapping - Variable in class net.imglib2.labeling.AbstractNativeLabeling: Deprecated.

Mapping from Label
mapping - Variable in class net.imglib2.labeling.LabelingType: Deprecated.
mapping - Variable in class net.imglib2.roi.labeling.LabelingType
Mask - Interface in net.imglib2.roi: A MaskPredicate for integral Localizable.
MaskAsRandomAccessible> - Class in net.imglib2.roi.mask.integer: This class takes a Mask of Localizable and wraps it as a RandomAccessible.
MaskAsRandomAccessible(Mask, B) - Constructor for class net.imglib2.roi.mask.integer.MaskAsRandomAccessible: Wraps a Mask as a RandomAccessible.
MaskInterval - Interface in net.imglib2.roi: A bounded Mask, that is, the mask predicate evaluates to false outside the bounds interval.
MaskIntervalAsRandomAccessibleInterval> - Class in net.imglib2.roi.mask.integer: This class takes a MaskInterval and wraps it as a RandomAccessibleInterval.
MaskIntervalAsRandomAccessibleInterval(MaskInterval, B) - Constructor for class net.imglib2.roi.mask.integer.MaskIntervalAsRandomAccessibleInterval: Wraps a MaskInterval as a RandomAccessibleInterval.
MaskPredicate<T> - Interface in net.imglib2.roi: Base interface for all things that divide an N-space into two parts.
MaskPredicateRandomAccess> - Class in net.imglib2.roi.mask.integer: RandomAccess based on Mask with Localizables.
MaskPredicateRandomAccess(Mask, B) - Constructor for class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
MaskPredicateRandomAccess(MaskPredicateRandomAccess) - Constructor for class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
MaskPredicateRealRandomAccess> - Class in net.imglib2.roi.mask.real: RealRandomAccess based on RealMask.
MaskPredicateRealRandomAccess(MaskPredicate<? super RealLocalizable>, B) - Constructor for class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
MaskPredicateRealRandomAccess(MaskPredicateRealRandomAccess) - Constructor for class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
Masks - Class in net.imglib2.roi: Utility class for working with Masks and RealMasks.
Masks() - Constructor for class net.imglib2.roi.Masks
maskType() - Method in interface net.imglib2.roi.composite.CompositeMaskPredicate
maskType() - Method in interface net.imglib2.roi.geom.real.Box
maskType() - Method in interface net.imglib2.roi.geom.real.Line
maskType() - Method in interface net.imglib2.roi.geom.real.PointMask
maskType() - Method in interface net.imglib2.roi.geom.real.Polygon2D
maskType() - Method in interface net.imglib2.roi.geom.real.Polyline
maskType() - Method in interface net.imglib2.roi.geom.real.RealPointCollection
maskType() - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid
maskType() - Method in interface net.imglib2.roi.MaskPredicate: Returns the type of the mask.
max - Variable in class net.imglib2.labeling.BoundingBox: Deprecated.
max(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
max(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
max(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
max(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
max(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
max(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
max(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
max(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
max(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
max(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
max(long[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
max(Positionable) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
max(int) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
max(long[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
max(Positionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
max(int) - Method in class net.imglib2.roi.labeling.LabelRegion
max(long[]) - Method in class net.imglib2.roi.labeling.LabelRegion
max(Positionable) - Method in class net.imglib2.roi.labeling.LabelRegion
max(int) - Method in class net.imglib2.roi.util.PositionableInterval
max(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
max(Positionable) - Method in class net.imglib2.roi.util.PositionableInterval
min - Variable in class net.imglib2.labeling.BoundingBox: Deprecated.
min(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
min(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
min(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
min(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
min(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
min(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
min(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
min(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
min(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.
min(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
min(long[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
min(Positionable) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
min(int) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
min(long[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
min(Positionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
min(int) - Method in class net.imglib2.roi.labeling.LabelRegion
min(long[]) - Method in class net.imglib2.roi.labeling.LabelRegion
min(Positionable) - Method in class net.imglib2.roi.labeling.LabelRegion
min(int) - Method in class net.imglib2.roi.util.PositionableInterval
min(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
min(Positionable) - Method in class net.imglib2.roi.util.PositionableInterval
minMax(long[], long[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
minMax(long[], long[]) - Method in class net.imglib2.roi.Bounds.IntersectionInterval
minMax(long[], long[]) - Method in class net.imglib2.roi.Bounds.SmallestContainingInterval
minMax(long[], long[]) - Method in class net.imglib2.roi.Bounds.UnionInterval
minus(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
MINUS - Static variable in class net.imglib2.roi.Bounds
minus(B) - Method in class net.imglib2.roi.Bounds
minus(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
minus(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.MaskInterval
minus(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
minus(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
minus(MaskInterval, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
minus(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
minus(RealMaskRealInterval, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
MINUS - Static variable in class net.imglib2.roi.Operators
minus(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
minus(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMaskRealInterval
ModCount() - Constructor for class net.imglib2.roi.labeling.LabelingType.ModCount
move(float, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(double, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(int, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(long, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(RealLocalizable) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(Localizable) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(float[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(int[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(long[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
move(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
move(double, int) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
move(double, int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
move(double, int) - Method in class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.
move(RealLocalizable) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Move the origin of the ellipse by the given displacement
move(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.
move(double, int) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.
move(double, int) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
move(double[]) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
move(int, int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
move(long, int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
move(Localizable) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
move(int[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
move(long[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
move(double, int) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
move(double, int) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.
move(double, int) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.
move(double, int) - Method in interface net.imglib2.roi.RegionOfInterest: Deprecated.
move(double[]) - Method in interface net.imglib2.roi.RegionOfInterest: Deprecated.
move(float, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(double, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(RealLocalizable) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(float[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(double[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(int, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(long, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(Localizable) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(int[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(long[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
move(int, int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
move(long, int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
move(Localizable) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
move(int[]) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
move(long[]) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
move(int, int) - Method in class net.imglib2.roi.util.PositionableInterval
move(long, int) - Method in class net.imglib2.roi.util.PositionableInterval
move(Localizable) - Method in class net.imglib2.roi.util.PositionableInterval
move(int[]) - Method in class net.imglib2.roi.util.PositionableInterval
move(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
move(float, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(double, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(RealLocalizable) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(float[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(double[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(int, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(long, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(Localizable) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(int[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
move(long[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
moveTo(double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
moveTo(double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler: Deprecated.

N

NativeImgLabeling<T extends Comparable<T>,I extends IntegerType> - Class in net.imglib2.labeling: Deprecated.
NativeImgLabeling(Img) - Constructor for class net.imglib2.labeling.NativeImgLabeling: Deprecated.
NativeImgLabeling(LabelingROIStrategyFactory<T>, Img) - Constructor for class net.imglib2.labeling.NativeImgLabeling: Deprecated.

Create a labeling backed by a native image with custom strategy and image factory
NativeLabeling<T extends Comparable<T>> - Interface in net.imglib2.labeling: Deprecated.
nDimensions - Variable in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
negate() - Method in enum net.imglib2.roi.BoundaryType
NEGATE - Static variable in class net.imglib2.roi.Bounds
negate() - Method in class net.imglib2.roi.Bounds
negate() - Method in interface net.imglib2.roi.Mask
negate() - Method in interface net.imglib2.roi.MaskPredicate
negate(Mask) - Static method in class net.imglib2.roi.Masks
negate(RealMask) - Static method in class net.imglib2.roi.Masks
NEGATE - Static variable in class net.imglib2.roi.Operators
negate() - Method in interface net.imglib2.roi.RealMask
net.imglib2.labeling - package net.imglib2.labeling
net.imglib2.roi - package net.imglib2.roi
net.imglib2.roi.boundary - package net.imglib2.roi.boundary
net.imglib2.roi.composite - package net.imglib2.roi.composite
net.imglib2.roi.geom - package net.imglib2.roi.geom
net.imglib2.roi.geom.integer - package net.imglib2.roi.geom.integer
net.imglib2.roi.geom.real - package net.imglib2.roi.geom.real
net.imglib2.roi.labeling - package net.imglib2.roi.labeling
net.imglib2.roi.mask.integer - package net.imglib2.roi.mask.integer
net.imglib2.roi.mask.real - package net.imglib2.roi.mask.real
net.imglib2.roi.util - package net.imglib2.roi.util
net.imglib2.roi.util.iterationcode - package net.imglib2.roi.util.iterationcode
next() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
next() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
next() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
next() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
nextRaster(long[], long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.

Advance the position to the next raster.
nextRaster(long[], long[], Interval) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.

Advance the position to the next raster, taking care that the raster is wholly within the given interval.
nextRaster(long[], long[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.
nextRaster(long[], long[]) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
nextRaster(long[], long[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.
nextRaster(long[], long[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.
NNSRealPointCollection<L extends RealLocalizable> - Class in net.imglib2.roi.geom.real: A RealPointCollection which checks if points are in the collection by performing a NearestNeighborSearch on the provided IterableRealInterval.
NNSRealPointCollection(IterableRealInterval<L>) - Constructor for class net.imglib2.roi.geom.real.NNSRealPointCollection: Creates a RealPointCollection.
NNSRealPointCollection(IterableRealInterval<L>, NearestNeighborSearch<L>) - Constructor for class net.imglib2.roi.geom.real.NNSRealPointCollection: Creates a RealPointCollection.
not(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.

Remove this region from the composite region of interest
numDimensions() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
numDimensions() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
numDimensions() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
numDimensions() - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
numDimensions() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
numDimensions() - Method in interface net.imglib2.roi.geom.real.Polygon2D
numLists() - Method in class net.imglib2.labeling.LabelingMapping: Deprecated.

Returns the number of indexed labeling lists
numSets() - Method in class net.imglib2.roi.labeling.LabelingMapping: Returns the number of indexed labeling sets
numVertices() - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
numVertices() - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
numVertices() - Method in interface net.imglib2.roi.geom.real.Polyshape: Returns the number of vertices in the shape.

O

of(Predicate<?>) - Static method in enum net.imglib2.roi.BoundaryType
of(Predicate<?>) - Static method in class net.imglib2.roi.Bounds.IntBounds
of(Interval) - Static method in class net.imglib2.roi.Bounds.IntBounds
of(Predicate<?>) - Static method in class net.imglib2.roi.Bounds.RealBounds
of(RealInterval) - Static method in class net.imglib2.roi.Bounds.RealBounds
of(Predicate<?>) - Static method in enum net.imglib2.roi.KnownConstant
offset - Variable in class net.imglib2.roi.util.OffsetLocalizable
OffsetLocalizable<L extends Localizable> - Class in net.imglib2.roi.util: A Localizable that is the location of another Localizable plus an offset.
OffsetLocalizable(L, long[]) - Constructor for class net.imglib2.roi.util.OffsetLocalizable
OffsetPositionableLocalizable - Class in net.imglib2.roi.util: A Localizable Positionable that is the position of another Localizable Positionable with an offset.
OffsetPositionableLocalizable(P, long[]) - Constructor for class net.imglib2.roi.util.OffsetPositionableLocalizable
openBox(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableBox with open boundaries.
openEllipsoid(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableEllipsoid with open boundaries.
openPolygon2D(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePolygon2D from a list of vertices, with open boundaries.
openPolygon2D(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePolygon2D from a list of (x, y) coordinates, with open boundaries.
openSphere(double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableSphere with open boundaries.
openSuperEllipsoid(double[], double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableSuperEllipsoid with open boundaries.
OpenWritableBox - Class in net.imglib2.roi.geom.real: A Box which contains no edge points defined by the min and max values in each dimension.
OpenWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.OpenWritableBox: Creates an n-d rectangular RealMaskRealInterval in real space.
OpenWritableEllipsoid - Class in net.imglib2.roi.geom.real: A Ellipsoid which does not contain any edge points, defined by a center and semi-axis lengths.
OpenWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.OpenWritableEllipsoid: Creates an n-d ellipsoid, where n is determined by the length of the smaller array.
OpenWritablePolygon2D - Class in net.imglib2.roi.geom.real: A Polygon2D which contains no boundary points, and is defined by the provided vertices.
OpenWritablePolygon2D(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.OpenWritablePolygon2D
OpenWritablePolygon2D(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.OpenWritablePolygon2D
OpenWritableSphere - Class in net.imglib2.roi.geom.real: A Sphere which does not contain any boundary points.
OpenWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.OpenWritableSphere: Creates an n-d sphere.
OpenWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real: A SuperEllipsoid which does not contain any edge points.
OpenWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.OpenWritableSuperEllipsoid: Creates an n-d super ellipsoid, where n is determined by the length of the smaller array
operand(int) - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
operand(int) - Method in interface net.imglib2.roi.composite.CompositeMaskPredicate
operand(int) - Method in interface net.imglib2.roi.composite.UnaryCompositeMaskPredicate
operands() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
operands() - Method in interface net.imglib2.roi.composite.CompositeMaskPredicate: Returns the list of operands, which were used to compute this Mask.
operands() - Method in interface net.imglib2.roi.composite.UnaryCompositeMaskPredicate
operator() - Method in interface net.imglib2.roi.composite.CompositeMaskPredicate: Returns the operation which lead to this mask.
operator() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
operator() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
operator() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
operator() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
operator() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
operator() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
operator() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
operator() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
operator() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
operator() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
Operators - Class in net.imglib2.roi: MaskOperator interfaces and instances.
Operators() - Constructor for class net.imglib2.roi.Operators
Operators.BinaryMaskOperator - Class in net.imglib2.roi
Operators.MaskOperator - Interface in net.imglib2.roi
Operators.RealTransformMaskOperator - Class in net.imglib2.roi: Operators.MaskOperator for transforming RealMasks.
Operators.UnaryMaskOperator - Class in net.imglib2.roi
or(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
OR - Static variable in class net.imglib2.roi.Bounds
or(B) - Method in class net.imglib2.roi.Bounds
or(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.

Make the region of interest a combination of the new rest and all previous
or(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
or(MaskInterval) - Method in interface net.imglib2.roi.MaskInterval
or(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
or(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
or(MaskInterval, MaskInterval) - Static method in class net.imglib2.roi.Masks
or(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
or(RealMaskRealInterval, RealMaskRealInterval) - Static method in class net.imglib2.roi.Masks
OR - Static variable in class net.imglib2.roi.Operators
or(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
or(RealMaskRealInterval) - Method in interface net.imglib2.roi.RealMaskRealInterval
origin() - Method in class net.imglib2.roi.labeling.LabelRegion
origin() - Method in interface net.imglib2.roi.PositionableIterableInterval: Get the Positionable, Localizable origin of this interval.
origin() - Method in interface net.imglib2.roi.PositionableIterableRegion: Get the Positionable, Localizable origin of this interval.
origin() - Method in class net.imglib2.roi.util.PositionableInterval: Get the Positionable, Localizable origin of this interval.
OverlappingLabels<T extends Comparable<T>> - Class in net.imglib2.roi.labeling
OverlappingLabels(RandomAccessibleInterval<LabelingType<T>>) - Constructor for class net.imglib2.roi.labeling.OverlappingLabels

P

pnpoly(TDoubleArrayList, TDoubleArrayList, RealLocalizable) - Static method in class net.imglib2.roi.geom.GeomMaths: Return true if the given point is contained inside the boundary.
pointMask(double[]) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePointMask from double[] coordinates.
pointMask(RealLocalizable) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePointMask from a RealLocalizable point.
PointMask - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval representing a single point in n-d real space.
points() - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
points() - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
points() - Method in interface net.imglib2.roi.geom.real.RealPointCollection: Returns the points in the collection.
points - Variable in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.
polygon2D(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePolygon2D from a list of vertices, with unspecified boundaries.
polygon2D(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePolygon2D from a list of (x, y) coordinates, with unspecified boundaries.
Polygon2D - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines a real space 2D polygon.
PolygonRegionOfInterest - Class in net.imglib2.roi: Deprecated.
PolygonRegionOfInterest() - Constructor for class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.
PolygonRegionOfInterest.Stripe - Class in net.imglib2.roi: Deprecated.

We decompose the polygon into stripes from yMin to yMin which have arrays of xTop and xBottom describing the polygon boundary between yMin and yMax.
polyline(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritablePolyline from a list of vertices.
Polyline - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines a polyline in n-d space.
Polyshape - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines a polygonal shape in n-d space.
positionable(RandomAccessibleInterval) - Static method in class net.imglib2.roi.Regions: Make any RandomAccessibleInterval<BooleanType> into an PositionableIterableRegion.
PositionableInterval - Class in net.imglib2.roi.util: An interval that can be moved around.
PositionableInterval(Interval) - Constructor for class net.imglib2.roi.util.PositionableInterval
PositionableInterval(PositionableInterval) - Constructor for class net.imglib2.roi.util.PositionableInterval: Copy constructor.
PositionableIterableInterval<T> - Interface in net.imglib2.roi: An IterableInterval that can be moved around.
PositionableIterableRegion<T extends BooleanType<T>> - Interface in net.imglib2.roi: An IterableRegion that can be moved around.
PositionableLocalizable - Interface in net.imglib2.roi.util: Something that is Positionable and Localizable.
PositionableWrappedIterableInterval<T,S extends IterableInterval<T>> - Class in net.imglib2.roi.util: Deprecated.
PositionableWrappedIterableInterval(S) - Constructor for class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
PositionableWrappedIterableInterval(PositionableWrappedIterableInterval<T, S>) - Constructor for class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
PositionableWrappedIterableRegion<T extends BooleanType<T>> - Class in net.imglib2.roi.util: Makes a IterableRegion Positionable by wrapping its accessors with an offset.
PositionableWrappedIterableRegion(IterableRegion<T>) - Constructor for class net.imglib2.roi.util.PositionableWrappedIterableRegion
predicate(Predicate<? super T>, Predicate<? super T>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
predicate(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
predicate(Predicate<? super T>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
prev - Variable in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder

Q

quadTo(double, double, double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
quadTo(double, double, double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler: Deprecated.

R

radius - Variable in class net.imglib2.roi.geom.real.AbstractWritableSphere
radius() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
radius() - Method in interface net.imglib2.roi.geom.real.Sphere: Returns the radius of this sphere.
randomAccess() - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
randomAccess(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
randomAccess() - Method in class net.imglib2.roi.boundary.Boundary
randomAccess(Interval) - Method in class net.imglib2.roi.boundary.Boundary
randomAccess() - Method in class net.imglib2.roi.labeling.ImgLabeling
randomAccess(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
randomAccess() - Method in class net.imglib2.roi.labeling.LabelRegion
randomAccess(Interval) - Method in class net.imglib2.roi.labeling.LabelRegion
randomAccess() - Method in class net.imglib2.roi.mask.integer.MaskAsRandomAccessible
randomAccess(Interval) - Method in class net.imglib2.roi.mask.integer.MaskAsRandomAccessible
randomAccess() - Method in class net.imglib2.roi.mask.integer.MaskIntervalAsRandomAccessibleInterval
randomAccess(Interval) - Method in class net.imglib2.roi.mask.integer.MaskIntervalAsRandomAccessibleInterval
randomAccess() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion: Deprecated.
randomAccess(Interval) - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion: Deprecated.
randomAccess() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
randomAccess(Interval) - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
randomAccess() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
randomAccess(Interval) - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
RandomAccessibleAsMask> - Class in net.imglib2.roi.mask.integer: Wraps a RandomAccessible as a Mask.
RandomAccessibleAsMask(RandomAccessible) - Constructor for class net.imglib2.roi.mask.integer.RandomAccessibleAsMask: The given RandomAccessible is expected to be defined everywhere.
RandomAccessibleIntervalAsMaskInterval> - Class in net.imglib2.roi.mask.integer: Wraps a RandomAccessibleInterval as a MaskInterval.
RandomAccessibleIntervalAsMaskInterval(RandomAccessibleInterval) - Constructor for class net.imglib2.roi.mask.integer.RandomAccessibleIntervalAsMaskInterval
RandomAccessibleRegionCursor<T extends BooleanType<T>> - Class in net.imglib2.roi.util: Deprecated.
RandomAccessibleRegionCursor(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
RandomAccessibleRegionCursor(RandomAccessibleRegionCursor<T>) - Constructor for class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
RealBounds(RealInterval) - Constructor for class net.imglib2.roi.Bounds.RealBounds
RealLocalizableRealPositionable - Interface in net.imglib2.roi.util: An element which can be localized and positioned in n-dimensional real space.
RealLocalizableRealPositionableWrapper<T extends RealLocalizable & RealPositionable> - Class in net.imglib2.roi.util: Wraps objects which implement RealLocalizable and RealPositionable as RealLocalizableRealPositionable.
RealLocalizableRealPositionableWrapper(T) - Constructor for class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
RealMask - Interface in net.imglib2.roi: A MaskPredicate for RealLocalizable.
RealMaskAsRealRandomAccessible> - Class in net.imglib2.roi.mask.real: This class takes a RealMask and wraps it as a RealRandomAccessible.
RealMaskAsRealRandomAccessible(RealMask, B) - Constructor for class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
RealMaskRealInterval - Interface in net.imglib2.roi: A bounded RealMask, that is, the mask predicate evaluates to false outside the bounds interval.
RealMaskRealIntervalAsRealRandomAccessibleRealInterval> - Class in net.imglib2.roi.mask.real: Wraps a RealMaskRealInterval as a RealRandomAccessibleRealInterval.
RealMaskRealIntervalAsRealRandomAccessibleRealInterval(RealMaskRealInterval, B) - Constructor for class net.imglib2.roi.mask.real.RealMaskRealIntervalAsRealRandomAccessibleRealInterval
realMax(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
realMax(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
realMax(RealPositionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
realMax(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
realMax(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
realMax(RealPositionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
realMax(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
realMax(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
realMax(RealPositionable) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
realMax(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
realMax(double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
realMax(RealPositionable) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
realMax(int) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
realMax(double[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
realMax(RealPositionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
realMax(int) - Method in class net.imglib2.roi.Bounds.RealTransformRealInterval
realMax(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
realMax(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
realMax(int) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
realMax(double[]) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
realMax(RealPositionable) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
realMax(int) - Method in interface net.imglib2.roi.geom.real.PointMask
realMax(int) - Method in class net.imglib2.roi.labeling.LabelRegion
realMax(double[]) - Method in class net.imglib2.roi.labeling.LabelRegion
realMax(RealPositionable) - Method in class net.imglib2.roi.labeling.LabelRegion
realMax(double[]) - Method in interface net.imglib2.roi.RealMaskRealInterval
realMax(RealPositionable) - Method in interface net.imglib2.roi.RealMaskRealInterval
realMax(int) - Method in class net.imglib2.roi.util.PositionableInterval
realMax(double[]) - Method in class net.imglib2.roi.util.PositionableInterval
realMax(RealPositionable) - Method in class net.imglib2.roi.util.PositionableInterval
realMin(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
realMin(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
realMin(RealPositionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval: Deprecated.
realMin(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
realMin(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
realMin(RealPositionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
realMin(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
realMin(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
realMin(RealPositionable) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
realMin(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
realMin(double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
realMin(RealPositionable) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
realMin(int) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
realMin(double[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
realMin(RealPositionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
realMin(int) - Method in class net.imglib2.roi.Bounds.RealTransformRealInterval
realMin(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
realMin(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
realMin(int) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
realMin(double[]) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
realMin(RealPositionable) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
realMin(int) - Method in interface net.imglib2.roi.geom.real.PointMask
realMin(int) - Method in class net.imglib2.roi.labeling.LabelRegion
realMin(double[]) - Method in class net.imglib2.roi.labeling.LabelRegion
realMin(RealPositionable) - Method in class net.imglib2.roi.labeling.LabelRegion
realMin(double[]) - Method in interface net.imglib2.roi.RealMaskRealInterval
realMin(RealPositionable) - Method in interface net.imglib2.roi.RealMaskRealInterval
realMin(int) - Method in class net.imglib2.roi.util.PositionableInterval
realMin(double[]) - Method in class net.imglib2.roi.util.PositionableInterval
realMin(RealPositionable) - Method in class net.imglib2.roi.util.PositionableInterval
realMinMax(double[], double[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
realMinMax(double[], double[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
realMinMax(double[], double[]) - Method in class net.imglib2.roi.Bounds.IntersectionRealInterval
realMinMax(double[], double[]) - Method in class net.imglib2.roi.Bounds.RealTransformRealInterval
realMinMax(double[], double[]) - Method in class net.imglib2.roi.Bounds.UnionRealInterval
realPointCollection(HashMap<TDoubleArrayList, L>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableRealPointCollection from a map of points.
realPointCollection(Collection<L>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableRealPointCollection from a collection of points.
RealPointCollection<L extends RealLocalizable> - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines a collection of real space points in n-d space.
realPointSampleListRealPointCollection(RealPointSampleList<L>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a WritableRealPointCollection from a RealPointSampleList.
realPointSampleListRealPointCollection(Collection<L>) - Static method in class net.imglib2.roi.geom.GeomMasks: Creates a RealPointSampleList-based WritableRealPointCollection from a collection of points.
RealPointSampleListWritableRealPointCollection<L extends RealLocalizable> - Class in net.imglib2.roi.geom.real: A WritableRealPointCollection which checks if points are contained in the collection by performing a NearestNeighborSearch on the provided RealPointSampleList.
RealPointSampleListWritableRealPointCollection(Collection<L>) - Constructor for class net.imglib2.roi.geom.real.RealPointSampleListWritableRealPointCollection: Creates a RealPointCollection with the points in the Collection.
RealPointSampleListWritableRealPointCollection(RealPointSampleList<L>) - Constructor for class net.imglib2.roi.geom.real.RealPointSampleListWritableRealPointCollection: Creates a RealPointCollection with the points in the RealPointSampleList.
realRandomAccess() - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
realRandomAccess(RealInterval) - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.

TODO Check if constraining real random access to an interval could be exploited for a more efficient solution.
realRandomAccess() - Method in class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
realRandomAccess(RealInterval) - Method in class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
realRandomAccess() - Method in class net.imglib2.roi.mask.real.RealMaskRealIntervalAsRealRandomAccessibleRealInterval
realRandomAccess(RealInterval) - Method in class net.imglib2.roi.mask.real.RealMaskRealIntervalAsRealRandomAccessibleRealInterval
RealRandomAccessibleAsRealMask> - Class in net.imglib2.roi.mask.real: Wraps a RealRandomAccessible as a RealMask.
RealRandomAccessibleAsRealMask(RealRandomAccessible) - Constructor for class net.imglib2.roi.mask.real.RealRandomAccessibleAsRealMask: The given RealRandomAccessible is expected to be defined everywhere.
RealRandomAccessibleRealIntervalAsRealMaskRealInterval> - Class in net.imglib2.roi.mask.real: Wraps a RealRandomAccessibleRealInterval as a RealMaskRealInterval.
RealRandomAccessibleRealIntervalAsRealMaskRealInterval(RealRandomAccessibleRealInterval) - Constructor for class net.imglib2.roi.mask.real.RealRandomAccessibleRealIntervalAsRealMaskRealInterval
RealTransformMaskOperator(RealTransform) - Constructor for class net.imglib2.roi.Operators.RealTransformMaskOperator
RealTransformRealInterval(RealInterval, InvertibleRealTransform) - Constructor for class net.imglib2.roi.Bounds.RealTransformRealInterval: Creates Bounds for a transformed source interval.
RealTransformUnaryCompositeRealMask - Class in net.imglib2.roi.composite: A RealMask which is the result of a transform operation on a Predicate.
RealTransformUnaryCompositeRealMask(Operators.RealTransformMaskOperator, Predicate<? super RealLocalizable>, int, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
RealTransformUnaryCompositeRealMaskRealInterval - Class in net.imglib2.roi.composite: A RealMaskRealInterval which is the result of a transform operation on a RealMaskRealInterval.
RealTransformUnaryCompositeRealMaskRealInterval(Operators.RealTransformMaskOperator, Predicate<? super RealLocalizable>, RealInterval, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
RectangleRegionOfInterest - Class in net.imglib2.roi: Deprecated.
RectangleRegionOfInterest(double[], double[]) - Constructor for class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.
RegionOfInterest - Interface in net.imglib2.roi: Deprecated.
Regions - Class in net.imglib2.roi
Regions() - Constructor for class net.imglib2.roi.Regions
remapLabels(ImgLabeling<T, I>, Function<T, U>) - Static method in class net.imglib2.roi.labeling.Labelings: Create a new ImgLabeling from an input labeling, with the labels transformed according to the provided Function.
remapLabels(ImgLabeling<T, I>, Map<T, U>) - Static method in class net.imglib2.roi.labeling.Labelings: Create a new ImgLabeling from an input labeling, with the labels transformed according to the provided Map.
remove(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
remove(int) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
remove() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
remove(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.

Remove a pixel from a ROI if possible.
remove(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.

Remove the region from the composite
remove(Object) - Method in class net.imglib2.roi.labeling.LabelingType
remove() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
removeAll(Collection<?>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
removeAll(Collection<?>) - Method in class net.imglib2.roi.labeling.LabelingType
removePoint(L) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection: Removes the given point from the set, if the point is found in the set.
removePoint(L) - Method in interface net.imglib2.roi.geom.real.WritableRealPointCollection: Optional operation.
removeVertex(int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
removeVertex(int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
removeVertex(int) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape: Removes the vertex at the given index.
removeVertex(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Remove a vertex from the polygon
reset() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor: Deprecated.
reset() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor: Deprecated.
reset() - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
reset() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
reset() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeIterator
reset() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
reset() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
reset() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor: Deprecated.
retainAll(Collection<?>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
retainAll(Collection<?>) - Method in class net.imglib2.roi.labeling.LabelingType

S

sameTypesAndDimensions(M, M) - Static method in class net.imglib2.roi.Masks: Returns true iff the two masks have the same mask type, boundary type and dimensionality.
sample(IterableInterval<Void>, RandomAccessible<T>) - Static method in class net.imglib2.roi.Regions: Given a region and an image, return an IterableInterval over the pixels of the image inside the mask.
sample(IterableRegion<?>, RandomAccessible<T>) - Static method in class net.imglib2.roi.Regions
sample(MaskInterval, RandomAccessible<T>) - Static method in class net.imglib2.roi.Regions: Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
sample(RealMaskRealInterval, RandomAccessible<T>) - Static method in class net.imglib2.roi.Regions: Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
sampleWithMask(Mask, RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.Regions: Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
sampleWithRandomAccessible(RandomAccessible, RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.Regions: Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
sampleWithRealMask(RealMask, RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.Regions: Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
SamplingCursor<T> - Class in net.imglib2.roi.util
SamplingCursor(Cursor<Void>, RandomAccess<T>) - Constructor for class net.imglib2.roi.util.SamplingCursor
SamplingIterableInterval<T> - Class in net.imglib2.roi.util
SamplingIterableInterval(IterableInterval<Void>, RandomAccessible<T>) - Constructor for class net.imglib2.roi.util.SamplingIterableInterval
search - Variable in class net.imglib2.roi.geom.real.NNSRealPointCollection
semiAxisLength(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
semiAxisLength(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
semiAxisLength(int) - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid: Returns the semi-axis length of the superellipsoid in a given dimension d
semiAxisLengths - Variable in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
SerialisationAccess(LabelingMapping<T>) - Constructor for class net.imglib2.roi.labeling.LabelingMapping.SerialisationAccess: Deprecated.
set(int, T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
set(LabelingType<T>) - Method in class net.imglib2.labeling.LabelingType: Deprecated.
set(LabelingType<T>) - Method in class net.imglib2.roi.labeling.LabelingType
setCenter(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
setCenter(double, int) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
setExponent(double) - Method in class net.imglib2.roi.geom.real.AbstractWritableEllipsoid: Ellipsoids have exponents of 2.
setExponent(double) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
setExponent(double) - Method in interface net.imglib2.roi.geom.real.WritableEllipsoid: Ellipsoids have exponents of 2.
setExponent(double) - Method in interface net.imglib2.roi.geom.real.WritableSuperEllipsoid: Sets the exponent.
setExtent(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Set the extent of the rectangle.
setExtent(double, int) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Set the extent for a single dimension
setGeneralPath(GeneralPath) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest: Deprecated.
setLabel(T) - Method in class net.imglib2.labeling.LabelingType: Deprecated.

Assign a pixel a single label
setLabeling(List<T>) - Method in class net.imglib2.labeling.LabelingType: Deprecated.

Set the labeling at the current pixel
setLabeling(T[]) - Method in class net.imglib2.labeling.LabelingType: Deprecated.
setLabelingCursorStrategy(LabelingROIStrategy<T, ? extends Labeling<T>>) - Method in class net.imglib2.labeling.AbstractLabeling: Deprecated.

Use an alternative strategy for making labeling cursors.
setLabelSets(List<Set<T>>) - Method in class net.imglib2.roi.labeling.LabelingMapping.SerialisationAccess: Deprecated.
setLabelSets(List<Set<T>>) - Method in class net.imglib2.roi.labeling.LabelingMapping: Replaces the current label mapping, with the mapping given as list of sets.
setOrigin(RealLocalizable) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Change the origin of the ellipse.
setOrigin(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Set the origin of the ellipse to the given coordinates
setOrigin(double, int) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Set the origin of the ellipse along the given dimension
setOrigin(RealLocalizable) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Set the origin using a point.
setOrigin(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Set the origin using a double array of coordinates.
setOrigin(double, int) - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.

Set the origin for a particular coordinate
setPoint1(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
setPoint1(double, int) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
setPoint1(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
setPoint1(double, int) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
setPoint2(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
setPoint2(double, int) - Method in class net.imglib2.roi.AngleRegionOfInterest: Deprecated.
setPoint2(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
setPoint2(double, int) - Method in class net.imglib2.roi.LineRegionOfInterest: Deprecated.
setPosition(RealLocalizable) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(Localizable) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(float[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(int[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(long[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(float, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(double, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(int, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(long, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.
setPosition(Localizable) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
setPosition(int[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
setPosition(long[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
setPosition(int, int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
setPosition(long, int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
setPosition(RealLocalizable) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(float[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(double[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(float, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(double, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(Localizable) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(int[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(long[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(int, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(long, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
setPosition(Localizable) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
setPosition(int[]) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
setPosition(long[]) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
setPosition(int, int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
setPosition(long, int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
setPosition(Localizable) - Method in class net.imglib2.roi.util.PositionableInterval
setPosition(int[]) - Method in class net.imglib2.roi.util.PositionableInterval
setPosition(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
setPosition(int, int) - Method in class net.imglib2.roi.util.PositionableInterval
setPosition(long, int) - Method in class net.imglib2.roi.util.PositionableInterval
setPosition(RealLocalizable) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(float[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(double[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(float, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(double, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(Localizable) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(int[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(long[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(int, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setPosition(long, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
setRadii(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Set all of the radii
setRadius(double) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Set all radii similarly so that the ellipse is really a circle
setRadius(double, int) - Method in class net.imglib2.roi.EllipseRegionOfInterest: Deprecated.

Set the radius along the given dimension
setRadius(double) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
setRadius(double) - Method in interface net.imglib2.roi.geom.real.WritableSphere: Sets the radius.
setSemiAxisLength(int, double) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere: Sets the radius of this sphere.
setSemiAxisLength(int, double) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
setSemiAxisLength(int, double) - Method in interface net.imglib2.roi.geom.real.WritableSuperEllipsoid: Sets the semi-axis length in dimension d.
setSideLength(int, double) - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
setSideLength(int, double) - Method in interface net.imglib2.roi.geom.real.WritableBox: Updates the length of the side in dimension d.
setVertexPosition(int, double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Change the position of a vertex
setVertexPosition(int, float[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Change the position of a vertex
setVertexPosition(int, RealLocalizable) - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Change the position of a vertex using a localizable
sideLength(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
sideLength(int) - Method in interface net.imglib2.roi.geom.real.Box: Returns side length of Box in dimension d.
size - Variable in class net.imglib2.labeling.AbstractLabeling: Deprecated.
size() - Method in class net.imglib2.labeling.AbstractLabeling: Deprecated.
size() - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
size() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
size() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest: Deprecated.

Return the # of elements available from a cursor over the ROI.
size() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval: Deprecated.
size() - Method in class net.imglib2.roi.geom.integer.IterableLine
size() - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
size() - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
size() - Method in interface net.imglib2.roi.geom.real.RealPointCollection: Returns the number of points in the collection.
size() - Method in class net.imglib2.roi.labeling.ImgLabeling
size() - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
size() - Method in class net.imglib2.roi.labeling.LabelingType
size() - Method in class net.imglib2.roi.RectangleRegionOfInterest: Deprecated.
size() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
size() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
size() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
size() - Method in class net.imglib2.roi.util.SamplingIterableInterval
SmallestContainingInterval(RealInterval) - Constructor for class net.imglib2.roi.Bounds.SmallestContainingInterval
source - Variable in class net.imglib2.roi.util.OffsetLocalizable
source - Variable in class net.imglib2.roi.util.PositionableWrappedIterableInterval: Deprecated.
Sphere - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines an n-d sphere.
src - Variable in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval: Deprecated.
statistics - Variable in class net.imglib2.labeling.DefaultROIStrategy: Deprecated.
strategy - Variable in class net.imglib2.labeling.AbstractLabeling: Deprecated.
Stripe(double, double) - Constructor for class net.imglib2.roi.PolygonRegionOfInterest.Stripe: Deprecated.
subIntervalIterationOrder(Interval) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
subIntervalIterationOrder(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
subIntervalIterationOrder(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
subList(int, int) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
SuperEllipsoid - Interface in net.imglib2.roi.geom.real: A RealMaskRealInterval which defines an n-d superellipsoid.
supportsOptimizedCursor(Interval) - Method in class net.imglib2.labeling.LabelingView: Deprecated.
supportsOptimizedCursor(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling: Deprecated.
supportsOptimizedCursor(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling

T

target - Variable in class net.imglib2.roi.util.SamplingCursor
test(Localizable) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
test(Localizable) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
test(RealLocalizable) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
test(RealLocalizable) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
test(Localizable) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
test(Localizable) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
test(RealLocalizable) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
test(RealLocalizable) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
test(RealLocalizable) - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
test(RealLocalizable) - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritableBox
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritableEllipsoid
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritableSphere
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritableLine
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePointMask
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D: Return true if the given point is contained inside the boundary.
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritableBox
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritableEllipsoid
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritablePolygon2D
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritableSphere
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritableSuperEllipsoid
test(Localizable) - Method in class net.imglib2.roi.mask.integer.DefaultMask
test(Localizable) - Method in class net.imglib2.roi.mask.integer.DefaultMaskInterval
test(Localizable) - Method in class net.imglib2.roi.mask.integer.RandomAccessibleAsMask
test(Localizable) - Method in class net.imglib2.roi.mask.integer.RandomAccessibleIntervalAsMaskInterval
test(RealLocalizable) - Method in class net.imglib2.roi.mask.real.DefaultRealMask
test(RealLocalizable) - Method in class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
test(RealLocalizable) - Method in class net.imglib2.roi.mask.real.RealRandomAccessibleAsRealMask
test(RealLocalizable) - Method in class net.imglib2.roi.mask.real.RealRandomAccessibleRealIntervalAsRealMaskRealInterval
toArray() - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
toArray(T[]) - Method in class net.imglib2.labeling.LabelingMapping.InternedList: Deprecated.
toArray() - Method in class net.imglib2.roi.labeling.LabelingType
toArray(T1[]) - Method in class net.imglib2.roi.labeling.LabelingType
toIterableRegion(RealMaskRealInterval) - Static method in class net.imglib2.roi.Masks: View a RealMaskRealInterval as an IterableRegion, in integer coordinates.
toIterableRegion(MaskInterval) - Static method in class net.imglib2.roi.Masks: View a MaskInterval as an IterableRegion, in integer coordinates.
toMask(RandomAccessible) - Static method in class net.imglib2.roi.Masks: Wraps the given RandomAccessible as a Mask.
toMaskInterval(RandomAccessibleInterval) - Static method in class net.imglib2.roi.Masks: Wraps the given RandomAccessibleInterval as a MaskInterval.
toRandomAccessible(Mask) - Static method in class net.imglib2.roi.Masks: Wraps the given Mask as a RandomAccessible of BoolType.
toRandomAccessibleInterval(MaskInterval) - Static method in class net.imglib2.roi.Masks: Wraps the given MaskInterval as a RandomAccessibleInterval of BoolType.
toRealMask(RealRandomAccessible) - Static method in class net.imglib2.roi.Masks: Wraps the given RealRandomAccessible as a RealMask.
toRealMaskRealInterval(RealRandomAccessibleRealInterval) - Static method in class net.imglib2.roi.Masks: Wraps the given RealRandomAccessibleRealInterval as a RealMaskRealInterval.
toRealRandomAccessible(RealMask) - Static method in class net.imglib2.roi.Masks: Wraps the given RealMask as a RealRandomAccessible of BoolType.
toRealRandomAccessibleRealInterval(RealMaskRealInterval) - Static method in class net.imglib2.roi.Masks: Wraps the given RealMaskRealInterval as a RealRandomAccessibleRealInterval of BoolType.
toString() - Method in class net.imglib2.labeling.LabelingType: Deprecated.
toString() - Method in class net.imglib2.roi.labeling.LabelingType
toString() - Method in class net.imglib2.roi.PolygonRegionOfInterest.Stripe: Deprecated.
toString() - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.
toString() - Method in class net.imglib2.roi.util.PositionableInterval
transform(Transform) - Method in interface net.imglib2.roi.Mask
transform(RealTransform) - Method in interface net.imglib2.roi.RealMask
transform(AffineGet) - Method in interface net.imglib2.roi.RealMaskRealInterval
type - Variable in class net.imglib2.labeling.LabelingConvertedCursor: Deprecated.
type - Variable in class net.imglib2.labeling.LabelingConvertedRandomAccess: Deprecated.
type - Variable in class net.imglib2.labeling.LabelingType: Deprecated.
type - Variable in class net.imglib2.roi.labeling.LabelingType

U

UnaryCompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite: A CompositeMaskPredicate with a unary operator and one operand.
UnaryMaskOperator(UnaryOperator<BoundaryType>, Bounds.UnaryBoundsOperator, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.Operators.UnaryMaskOperator
UNBOUNDED - Static variable in class net.imglib2.roi.Bounds.IntBounds
unbounded() - Method in class net.imglib2.roi.Bounds.IntBounds
UNBOUNDED - Static variable in class net.imglib2.roi.Bounds.RealBounds
unbounded() - Method in class net.imglib2.roi.Bounds.RealBounds
unbounded() - Method in class net.imglib2.roi.Bounds
unionBounded(Bounds.IntBounds, Bounds.IntBounds) - Method in class net.imglib2.roi.Bounds.IntBounds
unionBounded(Bounds.RealBounds, Bounds.RealBounds) - Method in class net.imglib2.roi.Bounds.RealBounds
unionBounded(B, B) - Method in class net.imglib2.roi.Bounds: Union of two bounded Bounds.
UnionInterval(Interval, Interval) - Constructor for class net.imglib2.roi.Bounds.UnionInterval
UnionRealInterval(RealInterval, RealInterval) - Constructor for class net.imglib2.roi.Bounds.UnionRealInterval
update(long[]) - Method in class net.imglib2.labeling.BoundingBox: Deprecated.

update the minimum and maximum extents with the given coordinates.
update(Localizable) - Method in class net.imglib2.roi.labeling.BoundingBox: update the minimum and maximum extents with the given coordinates.
update(long[]) - Method in class net.imglib2.roi.labeling.BoundingBox: update the minimum and maximum extents with the given coordinates.
updateBounds() - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
updateCachedMembershipStatus() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess: Deprecated.

V

validate() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest: Deprecated.
validate() - Method in class net.imglib2.roi.PolygonRegionOfInterest: Deprecated.

Build the cached list of stripes if necessary.
validateRealExtremaCache() - Method in class net.imglib2.roi.AbstractRegionOfInterest: Deprecated.
valueEquals(LabelingType<T>) - Method in class net.imglib2.labeling.LabelingType: Deprecated.
valueEquals(LabelingType<T>) - Method in class net.imglib2.roi.labeling.LabelingType
valueOf(String) - Static method in enum net.imglib2.roi.boundary.Boundary.StructuringElement: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.roi.BoundaryType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.roi.KnownConstant: Returns the enum constant of this type with the specified name.
values() - Static method in enum net.imglib2.roi.boundary.Boundary.StructuringElement: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.roi.BoundaryType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.roi.KnownConstant: Returns an array containing the constants of this enum type, in the order they are declared.
vertex(int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D: Return a copy of the vertex
vertex(int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline: Returns the vertex at the specified position.
vertex(int) - Method in interface net.imglib2.roi.geom.real.Polyshape: Returns the vertex at the specified position.
vertex(int) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape
VertexList(int) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolygon2D.VertexList
VertexList(double[]) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolygon2D.VertexList
vertices() - Method in interface net.imglib2.roi.geom.real.Polyshape

W

willPreserveBounds(RealTransform) - Static method in class net.imglib2.roi.Operators.RealTransformMaskOperator: Checks if the given transform will result in a bounded composite.
WritableBox - Interface in net.imglib2.roi.geom.real: A modifiable Box.
WritableEllipsoid - Interface in net.imglib2.roi.geom.real: A modifiable Ellipsoid.
WritableLine - Interface in net.imglib2.roi.geom.real: A modifiable Line.
WritablePointMask - Interface in net.imglib2.roi.geom.real: A modifiable PointMask.
WritablePolygon2D - Interface in net.imglib2.roi.geom.real: A modifiable Polygon2D.
WritablePolyline - Interface in net.imglib2.roi.geom.real: A modifiable Polyline.
WritablePolyshape - Interface in net.imglib2.roi.geom.real: A modifiable Polyshape.
WritableRealPointCollection<L extends RealLocalizable> - Interface in net.imglib2.roi.geom.real: A modifiable RealPointCollection.
WritableSphere - Interface in net.imglib2.roi.geom.real: A modifiable Sphere.
WritableSuperEllipsoid - Interface in net.imglib2.roi.geom.real: A modifiable SuperEllipsoid.

X

x - Variable in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
xBottom - Variable in class net.imglib2.roi.PolygonRegionOfInterest.Stripe: Deprecated.
xor(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
XOR - Static variable in class net.imglib2.roi.Bounds
xor(B) - Method in class net.imglib2.roi.Bounds
xor(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest: Deprecated.

For points within the region, invert the membership.
xor(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
xor(MaskInterval) - Method in interface net.imglib2.roi.MaskInterval
xor(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
xor(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
xor(MaskInterval, MaskInterval) - Static method in class net.imglib2.roi.Masks
xor(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
xor(RealMaskRealInterval, RealMaskRealInterval) - Static method in class net.imglib2.roi.Masks
XOR - Static variable in class net.imglib2.roi.Operators
xor(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
xor(RealMaskRealInterval) - Method in interface net.imglib2.roi.RealMaskRealInterval
xTop - Variable in class net.imglib2.roi.PolygonRegionOfInterest.Stripe: Deprecated.

Y

y - Variable in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
yMax - Variable in class net.imglib2.roi.PolygonRegionOfInterest.Stripe: Deprecated.
yMin - Variable in class net.imglib2.roi.PolygonRegionOfInterest.Stripe: Deprecated.

A B C D E F G H I J K L M N O P Q R S T U V W X Y