net.imglib2.realtransform

Class RealTransformRealRandomAccessible<T,R extends RealTransform>

java.lang.Object

net.imglib2.realtransform.RealTransformRealRandomAccessible<T,R>

Type Parameters:

T - data type

R - transformation

All Implemented Interfaces:

net.imglib2.EuclideanSpace, net.imglib2.RealRandomAccessible<T>, net.imglib2.Typed<T>

Direct Known Subclasses:

AffineRealRandomAccessible, RealTransformRandomAccessible

public class RealTransformRealRandomAccessible<T,R extends RealTransform>
extends Object
implements net.imglib2.RealRandomAccessible<T>

A RealRandomAccessible whose samples are generated from a RealRandomAccessible transformed by an RealTransform. Changing the RealTransform will affect the RealTransformRealRandomAccessible but not any existing RealRandomAccess on it because each RealRandomAccess internally works with a copy of the transform. Make sure that you request a new RandomAccess after modifying the transformation.

Author:

Stephan Saalfeld

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	RealTransformRealRandomAccessible.RealTransformRealRandomAccess RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.

Field Summary

Fields

Modifier and Type	Field and Description
protected net.imglib2.RealRandomAccessible<T>	source
protected R	transformToSource

Constructor Summary

Constructors

Constructor and Description
RealTransformRealRandomAccessible(net.imglib2.RealRandomAccessible<T> source, R transformToSource)

Method Summary

Modifier and Type	Method and Description
net.imglib2.RealRandomAccessible<T>	getSource()
R	getTransformToSource()
T	getType()
int	numDimensions()
RealTransformRealRandomAccessible.RealTransformRealRandomAccess	realRandomAccess()
RealTransformRealRandomAccessible.RealTransformRealRandomAccess	realRandomAccess(net.imglib2.RealInterval interval) To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface net.imglib2.RealRandomAccessible

getAt, getAt, getAt, realView

Field Detail

source

protected final net.imglib2.RealRandomAccessible<T> source

transformToSource

protected final R extends RealTransform transformToSource

Constructor Detail

RealTransformRealRandomAccessible

public RealTransformRealRandomAccessible(net.imglib2.RealRandomAccessible<T> source,
                                         R transformToSource)

Method Detail

numDimensions

public int numDimensions()

Specified by:

numDimensions in interface net.imglib2.EuclideanSpace

realRandomAccess

public RealTransformRealRandomAccessible.RealTransformRealRandomAccess realRandomAccess()

Specified by:

realRandomAccess in interface net.imglib2.RealRandomAccessible<T>

realRandomAccess

public RealTransformRealRandomAccessible.RealTransformRealRandomAccess realRandomAccess(net.imglib2.RealInterval interval)

To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.

Specified by:

realRandomAccess in interface net.imglib2.RealRandomAccessible<T>

getSource

public net.imglib2.RealRandomAccessible<T> getSource()

Returns:

source RealRandomAccessible

getTransformToSource

public R getTransformToSource()

Returns:

transform applied to source

getType

public T getType()

Specified by:

getType in interface net.imglib2.Typed<T>